RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8280
(158 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 82.0 bits (203), Expect = 2e-19
Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 4 PSGTEIPFPGTQNGTGDPDPDPRDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYR 63
P +++ + N + +P+ + + VI++ +++GN++V+ + + + R
Sbjct: 6 PVDSDLSPNISTNTS-EPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMR 64
Query: 64 KQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFP-GQSNWTCKLVKFVQPSGSF 122
+ YF+++L+ A+ FN + + ++ + G + CK F + F
Sbjct: 65 -----TVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYG--LFYCKFHNFFPIAAVF 117
Query: 123 LSSYILMAIAIDRYRAICHPL 143
S Y + A+A DRY AI HPL
Sbjct: 118 ASIYSMTAVAFDRYMAIIHPL 138
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 82.2 bits (202), Expect = 4e-19
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Query: 15 QNGTGDPDPDPRDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYF 74
N TG + E+ ++ + ++I ++ N+ VL ++ + + MYYF
Sbjct: 47 YNYTGKLNISADKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFH-----RPMYYF 101
Query: 75 ILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKL-VKFVQPSGSFLSSYILMAIAI 133
I +L+++DL+ GV L + W + FV S S S L+AIAI
Sbjct: 102 IGNLALSDLLAGVAYTANLLLSGATTYKLTPAQWFLREGSMFVALSASVFS---LLAIAI 158
Query: 134 DRYRAICHPLTYHT 147
+RY + ++
Sbjct: 159 ERYITMLKMKLHNG 172
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 76.3 bits (187), Expect = 4e-17
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 17/143 (11%)
Query: 11 FPGTQNGTGDPDPDPRDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSR 70
+ + G P P + + I L I ++ ++GN++V A++ + + +
Sbjct: 2 YKDDDDAMGQPVGAP-PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQ-----NV 55
Query: 71 MYYFILHLSIADLVTGV----FNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSY 126
YF++ L+ AD+ GV F + + C + + S +
Sbjct: 56 TNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHG-------CLFIACFVLVLTQSSIF 108
Query: 127 ILMAIAIDRYRAICHPLTYHTYF 149
L+AIAIDRY AI PL Y+
Sbjct: 109 SLLAIAIDRYIAIRIPLRYNGLV 131
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 72.9 bits (179), Expect = 6e-16
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 24/152 (15%)
Query: 1 MEDPSGTEIPFPGTQNGTGDPDPDPRDEDLARIEILTL-LVILIITLIGNLMVLAALYSR 59
+++ T+N ++ I+ L L + + L+GN +V+ +
Sbjct: 94 VKEAQAAAEQLKTTRNAYIQKYLGAFLPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRH 153
Query: 60 RHYRKQIKMSRM-YYFILHLSIADLV-------TGVFNVLPQLWWDINYRFPGQSNWTCK 111
KM +I +L++AD + G +L W F N CK
Sbjct: 154 T------KMKTATNIYIFNLALADTLVLLTLPFQGTDILLGF--W----PFG---NALCK 198
Query: 112 LVKFVQPSGSFLSSYILMAIAIDRYRAICHPL 143
V + F S++ L A+++DRY AICHP+
Sbjct: 199 TVIAIDYYNMFTSTFTLTAMSVDRYVAICHPI 230
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 70.0 bits (171), Expect = 5e-15
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 19/139 (13%)
Query: 17 GTGDPDPDPRDEDLARIEILTLL--VILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYF 74
G+ P + + L ++ ++ L GN +V+ + + + +
Sbjct: 1 GSHSLCPQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMK-----TATNIY 55
Query: 75 ILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWT-----CKLVKFVQPSGSFLSSYILM 129
I +L++AD + LP + +NY W CK+V + F S + L
Sbjct: 56 IFNLALADALATST--LP--FQSVNYLMG---TWPFGNILCKIVISIDYYNMFTSIFTLC 108
Query: 130 AIAIDRYRAICHPLTYHTY 148
+++DRY A+CHP+ +
Sbjct: 109 TMSVDRYIAVCHPVKALDF 127
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 70.1 bits (171), Expect = 5e-15
Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 15/152 (9%)
Query: 4 PSGTEIPFPGTQNGTGDPDPDPRDE--DLARIEILTLLVILII-TLIGNLMVLAALYSRR 60
G F N + PD D + ++ + + ++ ++++ + GN++V+ A+
Sbjct: 10 QPGNGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFE 69
Query: 61 HYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQ---SNWTCKLVKFVQ 117
+ + YFI L+ ADLV G+ V+P + + N+ C+ +
Sbjct: 70 RLQ-----TVTNYFITSLACADLVMGLA-VVP---FGAAHILMKMWTFGNFWCEFWTSID 120
Query: 118 PSGSFLSSYILMAIAIDRYRAICHPLTYHTYF 149
S L IA+DRY AI P Y +
Sbjct: 121 VLCVTASIETLCVIAVDRYFAITSPFKYQSLL 152
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 69.3 bits (170), Expect = 6e-15
Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 36 LTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLW 95
+ +++++ N + L + R + + Y +L+L++ADL L+
Sbjct: 43 AYMFLLIMLGFPINFLTLYVTVQHKKLR-----TPLNYILLNLAVADLFMVFGGFTTTLY 97
Query: 96 WDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPL 143
++ F C L F G ++ + L+ +AI+RY +C P+
Sbjct: 98 TSLHGYFVF-GPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM 144
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 67.8 bits (165), Expect = 3e-14
Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 14/140 (10%)
Query: 14 TQNGTGDPDPDPRDEDLARIEILTLLVILII--TLIGNLMVLAALYSRRHYRKQIKMSRM 71
+ + + + + + L+ + T+IGN++V+ ++ RH + +
Sbjct: 4 STDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQ-----TVN 58
Query: 72 YYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQ---SNWTCKLVKFVQPSGSFLSSYIL 128
YF+ L+ ADL+ GVF + Y G C L + S S L
Sbjct: 59 NYFLFSLACADLIIGVF-SMN---LYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNL 114
Query: 129 MAIAIDRYRAICHPLTYHTY 148
+ I+ DRY + PLTY
Sbjct: 115 LIISFDRYFCVTKPLTYPVK 134
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 67.0 bits (163), Expect = 7e-14
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 18/154 (11%)
Query: 1 MEDPSGTEIPFPGTQNGTGDPDPDPRDEDLARIEILTLLVILIITLIGNLMVLAALYSRR 60
M+ F D D + + I L I ++ ++GN++V A++
Sbjct: 1 MKTIIALSYIFCLVFADYKDDDDGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNS 60
Query: 61 HYRKQIKMSRMYYFILHLSIADLVTGVFNVLP-----QLWWDINYRFPGQSNWTCKLVKF 115
+ + + YF++ L+ AD+ GV +P + C +
Sbjct: 61 NLQ-----NVTNYFVVSLAAADIAVGVL-AIPFAITISTGFCAACHG-------CLFIAC 107
Query: 116 VQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYF 149
+ S + L+AIAIDRY AI PL Y+
Sbjct: 108 FVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLV 141
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 66.5 bits (162), Expect = 1e-13
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 5/114 (4%)
Query: 36 LTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLW 95
+ + + II GN +V+ + + + FI++L+ +D + N P +
Sbjct: 39 IFIGICGIIGCGGNGIVIYLFTKTKSLQ-----TPANMFIINLAFSDFTFSLVNGFPLMT 93
Query: 96 WDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYF 149
+ CK+ F+ F+S + I+IDRY I P+
Sbjct: 94 ISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKM 147
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 66.1 bits (161), Expect = 1e-13
Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 4 PSGTEIPFPGTQNGTGDPDPDPRDEDLARIEILTLLVILII-TLIGNLMVLAALYSRRHY 62
P+ + + GT D + + + ++ ++++ + GN++V+ A+
Sbjct: 157 PNRAKRVITTFRTGTWDAYAADE---VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERL 213
Query: 63 RKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQ---SNWTCKLVKFVQPS 119
+ + YFI L+ ADLV G+ V+P + + N+ C+ +
Sbjct: 214 Q-----TVTNYFITSLACADLVMGLA-VVP---FGAAHILTKTWTFGNFWCEFWTSI--D 262
Query: 120 GSFLSSYI--LMAIAIDRYRAICHPLTYHTYF 149
+++ I L IA+DRY AI P Y +
Sbjct: 263 VLCVTASIETLCVIAVDRYFAITSPFKYQSLL 294
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 65.9 bits (160), Expect = 1e-13
Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 15/148 (10%)
Query: 4 PSGTEIPFPGTQNGTGDPDPDPRDEDLARIEILTLLVILII--TLIGNLMVLAALYSRRH 61
+ N T + L +I + GN +V A+ R
Sbjct: 9 APASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERA 68
Query: 62 YRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQ----SNWTCKLVKFVQ 117
+ + Y ++ L++ADL+ V+P W + G S C + +
Sbjct: 69 LQ-----TTTNYLVVSLAVADLLVATL-VMP---WVVYLEVTGGVWNFSRICCDVFVTLD 119
Query: 118 PSGSFLSSYILMAIAIDRYRAICHPLTY 145
S + L AI+IDRY A+ P+ Y
Sbjct: 120 VMMCTASIWNLCAISIDRYTAVVMPVHY 147
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 65.1 bits (158), Expect = 3e-13
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 35 ILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQL 94
++ L I ++T+ NL+VL A+ S R + +I+ LS+ADL+ G V+P
Sbjct: 12 VVVLSTICLVTVGLNLLVLYAVRSERKLH-----TVGNLYIVSLSVADLIVGAV-VMP-- 63
Query: 95 WWDINYRFPGQ---SNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTY 148
+I Y + C + S S + + + IDRYR++ PL Y Y
Sbjct: 64 -MNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKY 119
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 64.5 bits (157), Expect = 5e-13
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 21/149 (14%)
Query: 7 TEIPFPGTQNGTGDPDPDPRDEDLARIEILTL-LVILIITLIGNLMVLAALYSRRHYRKQ 65
TE G + +P + + +I + T+ +I + ++GN +V+ + ++ R
Sbjct: 23 TEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLR-- 80
Query: 66 IKMSRMYYFILHLSIADLVTGVFNV-LPQLWWDINYRFPGQSNWT-----CKLVKFVQPS 119
S + LHLS+ADL+ F + LP +W ++ +NW CK V +
Sbjct: 81 ---SMTDKYRLHLSVADLL---FVITLP--FWAVDA----VANWYFGNFLCKAVHVIYTV 128
Query: 120 GSFLSSYILMAIAIDRYRAICHPLTYHTY 148
+ S +IL I++DRY AI H
Sbjct: 129 NLYSSVWILAFISLDRYLAIVHATNSQRP 157
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 55.5 bits (134), Expect = 6e-10
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 36 LTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLP-QL 94
L + +++++ + GN++V+AA+ S + + + FI L+ ADLV G+ V+P
Sbjct: 16 LLMALVVLLIVAGNVLVIAAIGSTQRLQ-----TLTNLFITSLACADLVVGLL-VVPFGA 69
Query: 95 WWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYI--LMAIAIDRYRAICHPLTYHTYF 149
+ + S C+L + +++ I L IAIDRY AI P Y +
Sbjct: 70 TLVVRGTWLWGSFL-CELWTSL--DVLCVTASIETLCVIAIDRYLAITSPFRYQSLM 123
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.001
Identities = 34/182 (18%), Positives = 52/182 (28%), Gaps = 65/182 (35%)
Query: 26 RDEDLARIEILTLLVILIITLIGNLM-VLAALYSR-RHY-----RKQIKMS--------- 69
R +DL R E+LT +++I + A + +H I+ S
Sbjct: 314 RPQDLPR-EVLTTNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 70 RMYYFILHLSIADLVTGVFN--------VLPQLWWDINYRFPGQSNWTCKLVKF--VQPS 119
R + L VF +L +W+D+ KL K+ V+
Sbjct: 372 RKMFDRL---------SVFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQ 420
Query: 120 GSFLSSYI----------------LMAIAIDRYRAI-------CHPLTYHTYFYL-IGRV 155
+ I L +D Y P YFY IG
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH- 479
Query: 156 EH 157
H
Sbjct: 480 -H 480
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 29.7 bits (67), Expect = 0.038
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 128 LMAIAIDRYRAICHPLTYHT 147
L AI++DRY +I + Y+
Sbjct: 7 LCAISLDRYWSITQAIEYNL 26
>3byw_A Putative arabinofuranosyltransferase; APC90585.2, extracellular
domain; HET: MSE; 2.35A {Corynebacterium diphtheriae
nctc 13129ORGANISM_TAXID}
Length = 177
Score = 26.4 bits (58), Expect = 4.1
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 3 DPSGTEIPFPGTQNGTGDPDPDPR 26
T G + T + D R
Sbjct: 110 TEDETTAGIEGDDSTTETVERDVR 133
>3etv_A Protein transport protein TIP20,linker,protein transport protein
DSL1; TIP20P-DSL1P complex, endoplasmic reticulum,
ER-golgi transport; 1.94A {Saccharomyces cerevisiae}
PDB: 3etu_A
Length = 355
Score = 26.3 bits (57), Expect = 5.1
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 20/89 (22%)
Query: 28 EDLARIEILTLLVILIITLIGNLMVL---AALYSRRHYRKQIKMSRM------------- 71
+L ++ L + LI + NL +L YS + RK+++ +
Sbjct: 66 NELNILDNLKTFLNLIKEVKTNLNILELENCYYSLQSLRKKMRNNAAYLKQSFNFQQSIS 125
Query: 72 -YYFILHLSIADLVTGVFNVLPQLWWDIN 99
Y LHL +LV+ ++ +L +W I
Sbjct: 126 TYVDTLHL---ELVSTLYKILTNGFWKIT 151
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 26.5 bits (59), Expect = 5.4
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 16/116 (13%)
Query: 20 DPDPDPRDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLS 79
P P P L I +++ ++ + AA + + +
Sbjct: 696 KPSPTPDSWKLKEIFATGVVLGGYQAIMTVIFFWAAHKTDFFSDT------FGVRSIRDN 749
Query: 80 IADLVTGVFN--VLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAI 133
+L+ V+ + R S FV+ G+ L L+A I
Sbjct: 750 NHELMGAVYLQVSIISQALIFVTRSRSWS--------FVERPGALLMIAFLIAQLI 797
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
membrane, membrane, transmembrane, transport protein;
HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
3gi9_C* 3gi8_C
Length = 444
Score = 26.1 bits (58), Expect = 6.2
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 33 IEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMS 69
I + +I T IG +++ + R+ ++ +
Sbjct: 396 ITNRFVFYGIIATFIG--VLIFEIIYRKVTKRTFSNN 430
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 26.0 bits (58), Expect = 6.2
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 35 ILTLLVILIITLIGNLMVLAALYSRRHYRKQ 65
IL+L+ + I+ L + + + +R+++ +
Sbjct: 178 ILSLVTLSIVPLTVLITQIVSSQTRKYFYEN 208
>3rko_M NADH-quinone oxidoreductase subunit M; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 509
Score = 25.8 bits (57), Expect = 7.2
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 41 ILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVL 91
+L++ L G L VLA L S + K ++ + + I V GVF +
Sbjct: 88 LLMVVLTGLLGVLAVLCSWKEIEKYQG----FFHLNLMWILGGVIGVFLAI 134
>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron,
oxidoreductase; HET: NTD; 2.50A {Streptomyces
avermitilis} SCOP: d.32.1.3 d.32.1.3
Length = 381
Score = 25.6 bits (55), Expect = 8.0
Identities = 10/74 (13%), Positives = 16/74 (21%)
Query: 1 MEDPSGTEIPFPGTQNGTGDPDPDPRDEDLARIEILTLLVILIITLIGNLMVLAALYSRR 60
+ T G P I +GN+ +
Sbjct: 143 IATYGKTRHTLVDRTGYDGPYLPGYVAAAPIVEPPAHRTFQAIDHCVGNVELGRMNEWVG 202
Query: 61 HYRKQIKMSRMYYF 74
Y K + + M F
Sbjct: 203 FYNKVMGFTNMKEF 216
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 8.3
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 78 LSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSF-LSSYILMAIAIDRY 136
+SI LV VF YR G ++ P S+Y ++AI R
Sbjct: 1777 MSIESLVEVVF-----------YR--G------MTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 137 RAIC 140
A
Sbjct: 1818 AASF 1821
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.144 0.456
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,717,093
Number of extensions: 158048
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 32
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.6 bits)