RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8280
         (158 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 56.5 bits (135), Expect = 9e-11
 Identities = 20/113 (17%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 38  LLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWD 97
           + +++++    N + L      +  R     + + Y +L+L++ADL            + 
Sbjct: 44  MFLLIMLGFPINFLTLYVTVQHKKLR-----TPLNYILLNLAVADLFMVFG-GFTTTLYT 97

Query: 98  INYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFY 150
             + +       C L  F    G  ++ + L+ +AI+RY  +C P++   +  
Sbjct: 98  SLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE 150


>d1ofza_ b.68.8.1 (A:) Fucose-specific lectin {Orange peel mushroom
           (Aleuria aurantia) [TaxId: 5188]}
          Length = 312

 Score = 25.4 bits (55), Expect = 3.4
 Identities = 5/40 (12%), Positives = 8/40 (20%), Gaps = 5/40 (12%)

Query: 84  VTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFL 123
              V+     L     + +     W           GS  
Sbjct: 129 NIRVYYQKSNLSGSSIHEYVWSGKW-----TAGASFGSTA 163


>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma
           chain {Escherichia coli [TaxId: 562]}
          Length = 225

 Score = 25.2 bits (55), Expect = 3.4
 Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 2/94 (2%)

Query: 38  LLVILIITLIGNLMVLAALYSRRHYRKQIKM--SRMYYFILHLSIADLVTGVFNVLPQLW 95
            +     + +  L+    L  RR +  +++   +     IL L +     G+  +     
Sbjct: 90  AMFAGGASGVLCLIGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQ 149

Query: 96  WDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILM 129
                       W   +V F   +   L     +
Sbjct: 150 HMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFI 183


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.144    0.456 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 675,472
Number of extensions: 30508
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 5
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.4 bits)