BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8281
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 56 HNLDDCA--SSPCGH-GICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDH 112
++D+C+ ++PC H G C++ + C C GY+G +C+ + NEC S+PC N +C D
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 62
Query: 113 VGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
+G F C C GY G C++ D C +PC H+ C+DK N F CECP G+ G C V
Sbjct: 63 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 22 SGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGH-GICVDQTDGYRC 80
+ PC++ G C T F+C C G++G C+ ++++C S+PC + C+DQ ++C
Sbjct: 12 ANPCEHAGKCIN---TLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQC 68
Query: 81 YCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKV 133
C PGY G C+ +EC SSPCL+ G C D + F C C G+TG CQ+ +
Sbjct: 69 ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPC 66
G+TG CE + C S PCQN +C +F+C+C PG+ G C+ N D+CASSPC
Sbjct: 35 GYTGPRCEIDVNECVSNPCQNDATCLDQ---IGEFQCICMPGYEGVHCEVNTDECASSPC 91
Query: 67 GH-GICVDQTDGYRCYCQPGYSGEQCQYEYN 96
H G C+D+ + ++C C G++G CQ + +
Sbjct: 92 LHNGRCLDKINEFQCECPTGFTGHLCQVDLH 122
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 56 HNLDDCA--SSPCGH-GICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDH 112
++D+C+ ++PC H G C++ + C C GY+G +C+ + NEC S+PC N +C D
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 60
Query: 113 VGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNC 167
+G F C C GY G C++ D C +PC H+ C+DK N F CECP G+ G C
Sbjct: 61 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLC 115
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 22 SGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGH-GICVDQTDGYRC 80
+ PC++ G C T F+C C G++G C+ ++++C S+PC + C+DQ ++C
Sbjct: 10 ANPCEHAGKCIN---TLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQC 66
Query: 81 YCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQ 130
C PGY G C+ +EC SSPCL+ G C D + F C C G+TG CQ
Sbjct: 67 ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPC 66
G+TG CE + C S PCQN +C +F+C+C PG+ G C+ N D+CASSPC
Sbjct: 33 GYTGPRCEIDVNECVSNPCQNDATCLDQ---IGEFQCICMPGYEGVHCEVNTDECASSPC 89
Query: 67 GH-GICVDQTDGYRCYCQPGYSGEQCQ 92
H G C+D+ + ++C C G++G CQ
Sbjct: 90 LHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 100 SSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECP 159
++PC + G C + +G F C C GYTG RC+I V+ C NPC + C+D+ F C C
Sbjct: 10 ANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICM 69
Query: 160 KGYQGPNCDV 169
GY+G +C+V
Sbjct: 70 PGYEGVHCEV 79
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 64/135 (47%), Gaps = 21/135 (15%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLD------------DCASSP 65
D C+ PC+NGG C L F C CP GF+ C ++ C +P
Sbjct: 1 DICDPNPCENGGICLPG-LADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNP 59
Query: 66 CGHGICVDQTDGYR--------CYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFS 117
C +G + ++ YR C C G++G CQ+ NECE PC NGG C+D V +S
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYS 119
Query: 118 CTCGHGYTGQRCQIK 132
C C + G+ CQ K
Sbjct: 120 CECPGEFMGRNCQYK 134
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 16 TSDPCESGPCQNGGSCAASNL----TAQQFKCLCPPGFSGSLCQHNLDDCASSPCGH-GI 70
++ PC PC NGG+C S T + C CP GF+G CQHN+++C PC + GI
Sbjct: 51 SAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGI 110
Query: 71 CVDQTDGYRCYCQPGYSGEQCQYE 94
C D Y C C + G CQY+
Sbjct: 111 CTDLVANYSCECPGEFMGRNCQYK 134
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQH 56
GF G C+ + CE PC+NGG C ++L A + C CP F G CQ+
Sbjct: 87 GFNGIHCQHNINECEVEPCKNGGIC--TDLVA-NYSCECPGEFMGRNCQY 133
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 68/144 (47%), Gaps = 23/144 (15%)
Query: 25 CQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCYCQP 84
C NGG C C+CPPGF G C + +C+++ G C +C C P
Sbjct: 187 CMNGGLCVTPGF------CICPPGFYGVNC--DKANCSTTCFNGGTCFYPG---KCICPP 235
Query: 85 GYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHH 144
G GEQC E ++C PC NGG C +G+ C C GY G C V C+P C H
Sbjct: 236 GLEGEQC--EISKC-PQPCRNGGKC---IGKSKCKCSKGYQGDLCSKPV--CEPG-CGAH 286
Query: 145 HYCVDKGNTFACECPKGYQGPNCD 168
C + C+C +G+ G +C+
Sbjct: 287 GTCHEPNK---CQCQEGWHGRHCN 307
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 11 KTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGI 70
KTC+ P G C+NGG C + C CP GF G C+ L C G+
Sbjct: 144 KTCQQAECP---GGCRNGGFCNERRI------CECPDGFHGPHCEKAL--CTPRCMNGGL 192
Query: 71 CVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQ 130
CV T G+ C C PG+ G C + C S+ C NGG+C + G+ C C G G++C+
Sbjct: 193 CV--TPGF-CICPPGFYGVNC--DKANC-STTCFNGGTCF-YPGK--CICPPGLEGEQCE 243
Query: 131 IKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDVP 170
I P PC + C+ K C+C KGYQG C P
Sbjct: 244 ISKC---PQPCRNGGKCIGKSK---CKCSKGYQGDLCSKP 277
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPC 66
GF G C+ + S C NGG+C KC+CPPG G C+ + C
Sbjct: 204 GFYGVNCDKANC---STTCFNGGTCFYPG------KCICPPGLEGEQCE--ISKCPQPCR 252
Query: 67 GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTG 126
G C+ ++ +C C GY G+ C CE C G+C + C C G+ G
Sbjct: 253 NGGKCIGKS---KCKCSKGYQGDLCSKPV--CEPG-CGAHGTCHEPN---KCQCQEGWHG 303
Query: 127 QRCQIKVD 134
+ C + +
Sbjct: 304 RHCNKRYE 311
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI-KVDLCDPNPCSHHHYCVDKGNTF 154
++CE+SPC N G C D +G ++CTC G+ G+ C++ LC + +C ++ N+
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 102
Query: 155 ACECPKGY 162
C C +GY
Sbjct: 103 VCSCARGY 110
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCG--HGICVDQT 75
D CE+ PCQN G C ++ C C GF G C+ S G C ++
Sbjct: 43 DQCETSPCQNQGKCKDG---LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 99
Query: 76 DGYRCYCQPGYS 87
+ C C GY+
Sbjct: 100 NSVVCSCARGYT 111
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
D C+ +PC + C D + C C +G++G NC++
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 59 DDCASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCS----DHV 113
D C +SPC G C D Y C C G+ G+ C+ + S L+ G C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 99
Query: 114 GRFSCTCGHGYT 125
C+C GYT
Sbjct: 100 NSVVCSCARGYT 111
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI-KVDLCDPNPCSHHHYCVDKGNTF 154
++CE+SPC N G C D +G ++CTC G+ G+ C++ LC + +C ++ N+
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 63
Query: 155 ACECPKGY 162
C C +GY
Sbjct: 64 VCSCARGY 71
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
D C+ +PC + C D + C C +G++G NC++
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 39
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 59 DDCASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCS----DHV 113
D C +SPC G C D Y C C G+ G+ C+ + S L+ G C +
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 60
Query: 114 GRFSCTCGHGYT 125
C+C GYT
Sbjct: 61 NSVVCSCARGYT 72
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCG--HGICVDQT 75
D CE+ PCQN G C ++ C C GF G C+ S G C ++
Sbjct: 4 DQCETSPCQNQGKCKDG---LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 60
Query: 76 DGYRCYCQPGYS 87
+ C C GY+
Sbjct: 61 NSVVCSCARGYT 72
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI-KVDLCDPNPCSHHHYCVDKGNTF 154
++CE+SPC N G C D +G ++CTC G+ G+ C++ LC + +C ++ N+
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 62
Query: 155 ACECPKGY 162
C C +GY
Sbjct: 63 VCSCARGY 70
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
D C+ +PC + C D + C C +G++G NC++
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 59 DDCASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCS----DHV 113
D C +SPC G C D Y C C G+ G+ C+ + S L+ G C +
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 59
Query: 114 GRFSCTCGHGYT 125
C+C GYT
Sbjct: 60 NSVVCSCARGYT 71
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCG--HGICVDQT 75
D CE+ PCQN G C ++ C C GF G C+ S G C ++
Sbjct: 3 DQCETSPCQNQGKCKDG---LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 59
Query: 76 DGYRCYCQPGYS 87
+ C C GY+
Sbjct: 60 NSVVCSCARGYT 71
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI-KVDLCDPNPCSHHHYCVDKGNTF 154
++CE+SPC N G C D +G ++CTC G+ G+ C++ LC + +C ++ N+
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 107
Query: 155 ACECPKGY 162
C C +GY
Sbjct: 108 VCSCARGY 115
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
D C+ +PC + C D + C C +G++G NC++
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 83
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCG--HGICVDQT 75
D CE+ PCQN G C ++ C C GF G C+ S G C ++
Sbjct: 48 DQCETSPCQNQGKCKDG---LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 104
Query: 76 DGYRCYCQPGYS 87
+ C C GY+
Sbjct: 105 NSVVCSCARGYT 116
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 59 DDCASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCS----DHV 113
D C +SPC G C D Y C C G+ G+ C+ + S L+ G C +
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 104
Query: 114 GRFSCTCGHGYT 125
C+C GYT
Sbjct: 105 NSVVCSCARGYT 116
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI-KVDLCDPNPCSHHHYCVDKGNTF 154
++CE+SPC N G C D +G ++CTC G+ G+ C++ LC + +C ++ N+
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 64
Query: 155 ACECPKGY 162
C C +GY
Sbjct: 65 VCSCARGY 72
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
D C+ +PC + C D + C C +G++G NC++
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 59 DDCASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCS----DHV 113
D C +SPC G C D Y C C G+ G+ C+ + S L+ G C +
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 61
Query: 114 GRFSCTCGHGYT 125
C+C GYT
Sbjct: 62 NSVVCSCARGYT 73
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCG--HGICVDQT 75
D CE+ PCQN G C ++ C C GF G C+ S G C ++
Sbjct: 5 DQCETSPCQNQGKCKDG---LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 61
Query: 76 DGYRCYCQPGYS 87
+ C C GY+
Sbjct: 62 NSVVCSCARGYT 73
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI-KVDLCDPNPCSHHHYCVDKGNTF 154
++CE+SPC N G C D +G ++CTC G+ G+ C++ LC + +C ++ N+
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 62
Query: 155 ACECPKGY 162
C C +GY
Sbjct: 63 VCSCARGY 70
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 59 DDCASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCS----DHV 113
D C +SPC G C D Y C C G+ G+ C+ + S L+ G C +
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 59
Query: 114 GRFSCTCGHGYT 125
C+C GYT
Sbjct: 60 NSVVCSCARGYT 71
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
D C+ +PC + C D + C C +G++G NC++
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCG--HGICVDQT 75
D CE+ PCQN G C ++ C C GF G C+ S G C ++
Sbjct: 3 DQCETSPCQNQGKCKDG---LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 59
Query: 76 DGYRCYCQPGYS 87
+ C C GY+
Sbjct: 60 NSVVCSCARGYT 71
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI-KVDLCDPNPCSHHHYCVDKGNTF 154
++CE+SPC N G C D +G ++CTC G+ G+ C++ LC + +C ++ N+
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 102
Query: 155 ACECPKGY 162
C C +GY
Sbjct: 103 VCSCARGY 110
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
D C+ +PC + C D + C C +G++G NC++
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 59 DDCASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCS----DHV 113
D C +SPC G C D Y C C G+ G+ C+ + S L+ G C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 99
Query: 114 GRFSCTCGHGYT 125
C+C GYT
Sbjct: 100 NSVVCSCARGYT 111
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCG--HGICVDQT 75
D CE+ PCQN G C ++ C C GF G C+ S G C ++
Sbjct: 43 DQCETSPCQNQGKCKDG---LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 99
Query: 76 DGYRCYCQPGYS 87
+ C C GY+
Sbjct: 100 NSVVCSCARGYT 111
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 98 CESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSH-HHYCVDKGNTFAC 156
C S PCL+ GSC D + ++CTC GY G C++ + C P H+C+ ++ C
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTC 67
Query: 157 ECPKGYQ 163
C +GY+
Sbjct: 68 SCAQGYR 74
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 14/72 (19%)
Query: 61 CASSPCGH-GICVDQTDGYRCYCQPGYSGEQCQYEYNECESSP-------CLNGGSCSDH 112
C S PC H G C D GY C C PGY G C+ NEC CL G
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQES--- 64
Query: 113 VGRFSCTCGHGY 124
++C+C GY
Sbjct: 65 ---YTCSCAQGY 73
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 19 PCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDC---ASSPCGHGICVDQT 75
PC S PC + GSC S + C C PG+ GS C+ ++C + C H C+
Sbjct: 7 PCISQPCLHNGSCQDS---IWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH-FCLPGQ 62
Query: 76 DGYRCYCQPGY 86
+ Y C C GY
Sbjct: 63 ESYTCSCAQGY 73
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 136 CDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
C PC H+ C D + C C GY+G NC++
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCEL 41
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI-KVDLCDPNPCSHHHYCVDKGNTF 154
++CE+SPC N G C D +G ++CTC G+ G+ C++ LC + +C ++ +
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQASV 64
Query: 155 ACECPKGY 162
C C +GY
Sbjct: 65 VCSCARGY 72
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
D C+ +PC + C D + C C +G++G NC++
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 59 DDCASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCS----DHV 113
D C +SPC G C D Y C C G+ G+ C+ + S L+ G C +
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 61
Query: 114 GRFSCTCGHGYT 125
C+C GYT
Sbjct: 62 ASVVCSCARGYT 73
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCG--HGICVDQT 75
D CE+ PCQN G C ++ C C GF G C+ S G C ++
Sbjct: 5 DQCETSPCQNQGKCKDG---LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 61
Query: 76 DGYRCYCQPGYS 87
C C GY+
Sbjct: 62 ASVVCSCARGYT 73
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI-KVDLCDPNPCSHHHYCVDKGNTF 154
++CE+SPC N G C +G ++CTC G+ G+ C++ LC + +C ++ N+
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 63
Query: 155 ACECPKGY 162
C C +GY
Sbjct: 64 VCSCARGY 71
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCG--HGICVDQT 75
D CE+ PCQN G C ++ C C GF G C+ S G C ++
Sbjct: 4 DQCETSPCQNQGKCKXG---LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 60
Query: 76 DGYRCYCQPGYS 87
+ C C GY+
Sbjct: 61 NSVVCSCARGYT 72
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
D C+ +PC + C + C C +G++G NC++
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCEL 39
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 59 DDCASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCS----DHV 113
D C +SPC G C Y C C G+ G+ C+ + S L+ G C +
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHEEQ 60
Query: 114 GRFSCTCGHGYT 125
C+C GYT
Sbjct: 61 NSVVCSCARGYT 72
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 59 DDCASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGG---SCSDHVG 114
D CASSPC +G C DQ Y C+C P + G C+ ++ NGG CSDH G
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 115 -RFSCTCGHGYT 125
+ SC C GY+
Sbjct: 108 TKRSCRCHEGYS 119
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDG 77
D C S PCQNGGSC Q + C C P F G C+ + DD ICV++ G
Sbjct: 48 DQCASSPCQNGGSCKDQ---LQSYICFCLPAFEGRNCETHKDD-------QLICVNENGG 97
Query: 78 YRCYC 82
YC
Sbjct: 98 CEQYC 102
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVD---LCDPNPCSHHHYCVD-KG 151
++C SSPC NGGSC D + + C C + G+ C+ D +C YC D G
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 152 NTFACECPKGY 162
+C C +GY
Sbjct: 108 TKRSCRCHEGY 118
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 59 DDCASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGG---SCSDHVG 114
D CASSPC +G C DQ Y C+C P + G C+ ++ NGG CSDH G
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 115 -RFSCTCGHGYT 125
+ SC C GY+
Sbjct: 108 TKRSCRCHEGYS 119
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDG 77
D C S PCQNGGSC Q + C C P F G C+ + DD ICV++ G
Sbjct: 48 DQCASSPCQNGGSCKDQ---LQSYICFCLPAFEGRNCETHKDD-------QLICVNENGG 97
Query: 78 YRCYC 82
YC
Sbjct: 98 CEQYC 102
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVD---LCDPNPCSHHHYCVD-KG 151
++C SSPC NGGSC D + + C C + G+ C+ D +C YC D G
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 152 NTFACECPKGY 162
+C C +GY
Sbjct: 108 TKRSCRCHEGY 118
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 59 DDCASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGG---SCSDHVG 114
D CASSPC +G C DQ Y C+C P + G C+ ++ NGG CSDH G
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 115 -RFSCTCGHGYT 125
+ SC C GY+
Sbjct: 108 TKRSCRCHEGYS 119
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDD---CASSPCG-HGICVD 73
D C S PCQNGGSC Q + C C P F G C+ + DD C + G C D
Sbjct: 48 DQCASSPCQNGGSCKDQ---LQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 74 QTDGYR-CYCQPGYS 87
T R C C GYS
Sbjct: 105 HTGTKRSCRCHEGYS 119
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVD---LCDPNPCSHHHYCVD-KG 151
++C SSPC NGGSC D + + C C + G+ C+ D +C YC D G
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 152 NTFACECPKGY 162
+C C +GY
Sbjct: 108 TKRSCRCHEGY 118
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 59 DDCASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGG---SCSDHVG 114
D CASSPC +G C DQ Y C+C P + G C+ ++ NGG CSDH G
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 115 -RFSCTCGHGYT 125
+ SC C GY+
Sbjct: 108 TKRSCRCHEGYS 119
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDG 77
D C S PCQNGGSC Q + C C P F G C+ + DD ICV++ G
Sbjct: 48 DQCASSPCQNGGSCKDQ---LQSYICFCLPAFEGRNCETHKDD-------QLICVNENGG 97
Query: 78 YRCYC 82
YC
Sbjct: 98 CEQYC 102
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVD---LCDPNPCSHHHYCVD-KG 151
++C SSPC NGGSC D + + C C + G+ C+ D +C YC D G
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 152 NTFACECPKGY 162
+C C +GY
Sbjct: 108 TKRSCRCHEGY 118
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI 131
++CES+PCLNGGSC D + + C C G+ G+ C++
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 131 IKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
+ D C+ NPC + C D N++ C CP G++G NC++
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQ 55
D CES PC NGGSC ++C CP GF G C+
Sbjct: 4 DQCESNPCLNGGSCKDD---INSYECWCPFGFEGKNCE 38
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 59 DDCASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQY 93
D C S+PC +G C D + Y C+C G+ G+ C+
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 59 DDCASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGG---SCSDHVG 114
D CASSPC +G C DQ Y C+C P + G C+ ++ NGG CSDH G
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 60
Query: 115 -RFSCTCGHGYT 125
+ SC C GY+
Sbjct: 61 TKRSCRCHEGYS 72
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDG 77
D C S PCQNGGSC Q + C C P F G C+ + DD ICV++ G
Sbjct: 1 DQCASSPCQNGGSCKDQ---LQSYICFCLPAFEGRNCETHKDD-------QLICVNENGG 50
Query: 78 YRCYC 82
YC
Sbjct: 51 CEQYC 55
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVD---LCDPNPCSHHHYCVD-KG 151
++C SSPC NGGSC D + + C C + G+ C+ D +C YC D G
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 60
Query: 152 NTFACECPKGY 162
+C C +GY
Sbjct: 61 TKRSCRCHEGY 71
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 59 DDCASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGG---SCSDHVG 114
D CASSPC +G C DQ Y C+C P + G C+ ++ NGG CSDH G
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 66
Query: 115 -RFSCTCGHGYT 125
+ SC C GY+
Sbjct: 67 TKRSCRCHEGYS 78
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDG 77
D C S PCQNGGSC Q + C C P F G C+ + DD ICV++ G
Sbjct: 7 DQCASSPCQNGGSCKDQ---LQSYICFCLPAFEGRNCETHKDD-------QLICVNENGG 56
Query: 78 YRCYC 82
YC
Sbjct: 57 CEQYC 61
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVD---LCDPNPCSHHHYCVD-KG 151
++C SSPC NGGSC D + + C C + G+ C+ D +C YC D G
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 66
Query: 152 NTFACECPKGY 162
+C C +GY
Sbjct: 67 TKRSCRCHEGY 77
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 94 EYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI 131
+ NEC S+PC N +C D +G F C C GY G C+I
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 57 NLDDCASSPCGH-GICVDQTDGYRCYCQPGYSGEQCQ 92
++++C S+PC + C+DQ ++C C PGY G C+
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCE 37
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 133 VDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
V+ C NPC + C+D+ F C C GY+G C++
Sbjct: 2 VNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQ 55
+ C S PCQN +C +F+C+C PG+ G C+
Sbjct: 3 NECISNPCQNDATCLDQ---IGEFQCICMPGYEGVYCE 37
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 61 CASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGG---SCSDHVG-R 115
CASSPC +G C DQ Y C+C P + G C+ ++ NGG CSDH G +
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTK 61
Query: 116 FSCTCGHGYT 125
SC C GY+
Sbjct: 62 RSCRCHEGYS 71
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 97 ECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVD---LCDPNPCSHHHYCVD-KGN 152
+C SSPC NGGSC D + + C C + G+ C+ D +C YC D G
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 153 TFACECPKGY 162
+C C +GY
Sbjct: 61 KRSCRCHEGY 70
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 20 CESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYR 79
C S PCQNGGSC Q + C C P F G C+ + DD ICV++ G
Sbjct: 2 CASSPCQNGGSCKDQ---LQSYICFCLPAFEGRNCETHKDD-------QLICVNENGGCE 51
Query: 80 CYC 82
YC
Sbjct: 52 QYC 54
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 61 CASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGG---SCSDHVG-R 115
CASSPC +G C DQ Y C+C P + G C+ ++ NGG CSDH G +
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTK 61
Query: 116 FSCTCGHGYT 125
SC C GY+
Sbjct: 62 RSCRCHEGYS 71
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 97 ECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVD---LCDPNPCSHHHYCVD-KGN 152
+C SSPC NGGSC D + + C C + G+ C+ D +C YC D G
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 153 TFACECPKGY 162
+C C +GY
Sbjct: 61 KRSCRCHEGY 70
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 20 CESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYR 79
C S PCQNGGSC Q + C C P F G C+ + DD ICV++ G
Sbjct: 2 CASSPCQNGGSCKDQ---LQSYICFCLPAFEGRNCETHKDD-------QLICVNENGGCE 51
Query: 80 CYC 82
YC
Sbjct: 52 QYC 54
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKV 133
++CE PCLN G C D +G ++CTC G+ G+ C+
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFST 41
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
D C+ +PC + +C D + C C +G++G NC+
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEF 39
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 61 CASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCS----DHVGRF 116
CAS CGHG C+D + C C+ G+ G CQ E + S L+ G C+ + VG
Sbjct: 11 CASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCS--LDNGGCTHYCLEEVGWR 68
Query: 117 SCTCGHGYT 125
C+C GY
Sbjct: 69 RCSCAPGYK 77
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 100 SSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDL--CDPNPCSHHHYCVDKGNTFACE 157
+S C G+C D +G FSC C G+ G+ CQ +V C + HYC+++ C
Sbjct: 12 ASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCS 71
Query: 158 CPKGYQ 163
C GY+
Sbjct: 72 CAPGYK 77
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 133 VDLCDPNPCSHHHYCVDKG-NTFACECPK-GYQGPNCDVPGIVFYLK 177
V+ C PC H CV G + + C+C + GY GPNC +P I +L+
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLR 47
Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCP-PGFSGSLC 54
+PC PCQ+ G C L +++C C G+SG C
Sbjct: 2 NPCCYYPCQHQGICVRFGL--DRYQCDCTRTGYSGPNC 37
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 133 VDLCDPNPCSHHHYCVDKG-NTFACECPK-GYQGPNCDVPGIVFYLK 177
V+ C PC H CV G + + C+C + GY GPNC +P I +L+
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLR 47
Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCP-PGFSGSLC 54
+PC PCQ+ G C L +++C C G+SG C
Sbjct: 2 NPCCYYPCQHQGICVRFGL--DRYQCDCTRTGYSGPNC 37
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 133 VDLCDPNPCSHHHYCVDKG-NTFACECPK-GYQGPNCDVPGIVFYLK 177
V+ C PC H CV G + + C+C + GY GPNC +P I +L+
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLR 48
Score = 27.3 bits (59), Expect = 5.1, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCP-PGFSGSLC 54
+PC PCQ+ G C L +++C C G+SG C
Sbjct: 3 NPCCYYPCQHQGICVRFGL--DRYQCDCTRTGYSGPNC 38
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 133 VDLCDPNPCSHHHYCVDKG-NTFACECPK-GYQGPNCDVPGIVFYLK 177
V+ C PC H CV G + + C+C + GY GPNC +P I +L+
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLR 79
Score = 27.3 bits (59), Expect = 5.4, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCP-PGFSGSLC 54
+PC PCQ+ G C L +++C C G+SG C
Sbjct: 34 NPCCYYPCQHQGICVRFGL--DRYQCDCTRTGYSGPNC 69
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 40.4 bits (93), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 133 VDLCDPNPCSHHHYCVDKG-NTFACECPK-GYQGPNCDVPGIVFYLK 177
V+ C PC H CV G + + C+C + GY GPNC +P I +L+
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLR 55
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCP-PGFSGSLC 54
+PC PCQ+ G C L +++C C G+SG C
Sbjct: 10 NPCCYYPCQHQGICVRFGL--DRYQCDCTRTGYSGPNC 45
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 40.4 bits (93), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 133 VDLCDPNPCSHHHYCVDKG-NTFACECPK-GYQGPNCDVPGIVFYLK 177
V+ C PC H CV G + + C+C + GY GPNC +P I +L+
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLR 55
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCP-PGFSGSLC 54
+PC PCQ+ G C L +++C C G+SG C
Sbjct: 10 NPCCYYPCQHQGICVRFGL--DRYQCDCTRTGYSGPNC 45
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 40.4 bits (93), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 133 VDLCDPNPCSHHHYCVDKG-NTFACECPK-GYQGPNCDVPGIVFYLK 177
V+ C PC H CV G + + C+C + GY GPNC +P I +L+
Sbjct: 13 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLR 59
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCP-PGFSGSLC 54
+PC PCQ+ G C L +++C C G+SG C
Sbjct: 14 NPCCYYPCQHQGICVRFGL--DRYQCDCTRTGYSGPNC 49
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI 131
++CE +PCLNGG C D + + C C G+ G+ C++
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCEL 84
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
D C+PNPC + C D N++ C C G++G NC++
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCEL 84
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 59 DDCASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQYE 94
D C +PC +G +C D + Y C+CQ G+ G+ C+ +
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQ 55
D CE PC NGG C ++C C GF G C+
Sbjct: 49 DQCEPNPCLNGGLCKDD---INSYECWCQVGFEGKNCE 83
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 45 CPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCL 104
C G+ G C + SP HG C D C CQ G+ G C ++C P
Sbjct: 54 CMEGWMGPECNRAICRQGCSP-KHGSCKLPGD---CRCQYGWQGLYC----DKCIPHPGC 105
Query: 105 NGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPN-PCSHHHYCVDKG-NTFACECPKGY 162
G C++ + C C + GQ C ++ C + PC + C + G + + C CP+GY
Sbjct: 106 VHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGY 162
Query: 163 QGPNCDV 169
GPNC++
Sbjct: 163 SGPNCEI 169
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 36 LTAQQFKCLCPPGFSGSLCQHNLDDCAS-SPCGHGICVDQT--DGYRCYCQPGYSGEQCQ 92
+ + ++CLC + G LC +L+ C + PC +G T D Y+C C GYSG C+
Sbjct: 109 ICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 8 FTGKTCEDTSDPCES-GPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQ 55
+ G+ C+ + C + PC NGG+C SN +++C CP G+SG C+
Sbjct: 122 WGGQLCDKDLNYCGTHQPCLNGGTC--SNTGPDKYQCSCPEGYSGPNCE 168
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI 131
++CE PCLN G C +G ++CTC G+ G+ C+
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEF 83
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDVP 170
D C+ +PC + +C + C C +G++G NC+
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFS 84
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 57 NLDDCAS-SPCGHGICVDQTDGYRCYCQPGY--SGEQCQYEYNECE-SSPCLNGGSCSDH 112
++D+C C HG C++ YRC C GY +G +C + +EC +PC NG +C +
Sbjct: 4 DMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGNG-TCKNV 61
Query: 113 VGRFSCTCGHGY 124
+G F CTC G+
Sbjct: 62 IGGFECTCEEGF 73
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGF--SGSLCQHNLDDCASSPCGHGICVDQT 75
D C+ G C N T ++C CP G+ +G+ C + +PCG+G C +
Sbjct: 12 DVCKHGQCIN---------TDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVI 62
Query: 76 DGYRCYCQPGYS 87
G+ C C+ G+
Sbjct: 63 GGFECTCEEGFE 74
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKV 133
++CE PCLN G C +G ++CTC G+ G+ C+
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFST 41
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
D C+ +PC + +C + C C +G++G NC+
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEF 39
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 61 CASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCS----DHVGRF 116
CAS CGHG C+ + C C+ G+ G CQ E + S L+ G C+ + VG
Sbjct: 18 CASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCS--LDNGGCTHYCLEEVGWR 75
Query: 117 SCTCGHGYT 125
C+C GY
Sbjct: 76 RCSCAPGYK 84
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 100 SSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDL--CDPNPCSHHHYCVDKGNTFACE 157
+S C G+C +G FSC C G+ G+ CQ +V C + HYC+++ C
Sbjct: 19 ASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCS 78
Query: 158 CPKGYQ 163
C GY+
Sbjct: 79 CAPGYK 84
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI 131
++CE +PCLNGG C + + C C G+ G+ C++
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCEL 84
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
D C+PNPC + C N++ C C G++G NC++
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCEL 84
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 59 DDCASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQYE 94
D C +PC +G +C + Y C+CQ G+ G+ C+ +
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELD 85
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQ 55
D CE PC NGG C ++C C GF G C+
Sbjct: 49 DQCEPNPCLNGGLCKXD---INSYECWCQVGFEGKNCE 83
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDD 60
D C S PCQNGGSC Q + C C P F G C+ + DD
Sbjct: 4 DQCASSPCQNGGSCKD---QLQSYICFCLPAFEGRNCETHKDD 43
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVD 134
++C SSPC NGGSC D + + C C + G+ C+ D
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 42
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 59 DDCASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQYEYNE 97
D CASSPC +G C DQ Y C+C P + G C+ ++
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr,
23 Structures
Length = 41
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 59 DDCASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQ 92
D CASSPC +G C DQ Y C+C P + G C+
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI 131
++C SSPC NGGSC D + + C C + G+ C+
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET 39
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQ 55
D C S PCQNGGSC Q + C C P F G C+
Sbjct: 4 DQCASSPCQNGGSCKDQ---LQSYICFCLPAFEGRNCE 38
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 130 QIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
++ C NPC H C++ C CP GY GP CDV
Sbjct: 42 RLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDV 81
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 98 CESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI 131
C ++PCL+GG C + G C C GYTG C +
Sbjct: 48 CRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDV 81
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 61 CASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQ 92
C ++ C GHG CV+ + Y C C PG+SG +C+
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 136 CDPNPCSHHHYCVDKGNTFACECPKGYQGPNCD 168
C CS H CV+ N + C+C G+ G C+
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 61 CASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQ 92
C ++ C GHG CV+ + Y C C PG+SG +C+
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 140 PCSHHHYCVDKG-NTFACECPK-GYQGPNCDVPGIVFYLK 177
PC H CV G + + C+C + GY GPNC +P I +L+
Sbjct: 8 PCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLR 47
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 140 PCSHHHYCVDKG-NTFACECPK-GYQGPNCDVPGIVFYLK 177
PC H CV G + + C+C + GY GPNC +P I +L+
Sbjct: 9 PCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLR 48
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 140 PCSHHHYCVDKG-NTFACECPK-GYQGPNCDVPGIVFYLK 177
PC H CV G + + C+C + GY GPNC +P I +L+
Sbjct: 40 PCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLR 79
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 140 PCSHHHYCVDKG-NTFACECPK-GYQGPNCDVPGIVFYLK 177
PC H CV G + + C+C + GY GPNC +P I +L+
Sbjct: 9 PCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLR 48
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 9 TGKTCEDTSDP----CESGPC--QNGGSCAASNLTAQQFKCLCPPGFSGSLCQH--NLDD 60
+ C D SD C + C NGG N ++CLCP GF + ++D+
Sbjct: 277 MARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDE 336
Query: 61 CASSPCGHGICVDQTDGYRCYCQPGY 86
C +CV+ GY+C C+ G+
Sbjct: 337 CQDPDTCSQLCVNLEGGYKCQCEEGF 362
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 95 YNECESSPCL--NGG---SCSDHVGRFSCTCGHGY--TGQRCQIKVDLC-DPNPCSHHHY 146
EC ++ CL NGG C+D + C C G+ QR +D C DP+ CS
Sbjct: 289 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--L 346
Query: 147 CVDKGNTFACECPKGYQ----GPNCDVPGIVFYLKY 178
CV+ + C+C +G+Q C G + YL +
Sbjct: 347 CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 382
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 94 EYNECESSPCLNG-GSCSDHVGRFSCTCGHGYTGQRCQIK----VDLCDPNPCS-HHHYC 147
+ +EC SP L G G C + G F C C GY +K +D C +P C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 148 VDKGNTFACECPKGYQ 163
+ ++ CECP G+Q
Sbjct: 62 HNTEGSYRCECPPGHQ 77
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 13 CEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGF-SGSLCQHN---LDDCASSP--C 66
C + D C G C N T F+C C G+ SG + N +D+C P C
Sbjct: 6 CRISPDLCGRGQCVN---------TPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLC 56
Query: 67 GHGICVDQTDGYRCYCQPGY 86
G+C + YRC C PG+
Sbjct: 57 RGGVCHNTEGSYRCECPPGH 76
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding
Epidermal Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 27 NGGSCAASNLTAQQFKCLCPPGFSGSLCQH--NLDDCASSPCGHGICVDQTDGYRCYCQP 84
NGG N ++CLCP GF + ++D+C +CV+ GY+C C+
Sbjct: 9 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 68
Query: 85 GYS 87
G+
Sbjct: 69 GFQ 71
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 27 NGGSCAASNLTAQQFKCLCPPGFSGSLCQH--NLDDCASSPCGHGICVDQTDGYRCYCQP 84
NGG N ++CLCP GF + ++D+C +CV+ GY+C C+
Sbjct: 9 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 68
Query: 85 GYS 87
G+
Sbjct: 69 GFQ 71
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 27 NGGSCAASNLTAQQFKCLCPPGFSGSLCQH--NLDDCASSPCGHGICVDQTDGYRCYCQP 84
NGG N ++CLCP GF + ++D+C +CV+ GY+C C+
Sbjct: 12 NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 71
Query: 85 GYS 87
G+
Sbjct: 72 GFQ 74
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 96 NECESSPCLNGG---SCSDHVGRFSCTCGHGY--TGQRCQIKVDLC-DPNPCSHHHYCVD 149
NEC + NGG C+D + C C G+ QR +D C DP+ CS CV+
Sbjct: 6 NECLDN---NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVN 60
Query: 150 KGNTFACECPKGYQ 163
+ C+C +G+Q
Sbjct: 61 LEGGYKCQCEEGFQ 74
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 27 NGGSCAASNLTAQQFKCLCPPGFSGSLCQH--NLDDCASSPCGHGICVDQTDGYRCYCQP 84
NGG N ++CLCP GF + ++D+C +CV+ GY+C C+
Sbjct: 36 NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 95
Query: 85 GYS 87
G+
Sbjct: 96 GFQ 98
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 96 NECESSPCLNGG---SCSDHVGRFSCTCGHGY--TGQRCQIKVDLC-DPNPCSHHHYCVD 149
NEC + NGG C+D + C C G+ QR +D C DP+ CS CV+
Sbjct: 30 NECLDN---NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVN 84
Query: 150 KGNTFACECPKGYQ 163
+ C+C +G+Q
Sbjct: 85 LEGGYKCQCEEGFQ 98
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 27 NGGSCAASNLTAQQFKCLCPPGFSGSLCQH--NLDDCASSPCGHGICVDQTDGYRCYCQP 84
NGG N ++CLCP GF + ++D+C +CV+ GY+C C+
Sbjct: 12 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 71
Query: 85 GYS 87
G+
Sbjct: 72 GFQ 74
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 10 GKTCEDTSDP----CESGPC--QNGGSCAASNLTAQQFKCLCPPGFSGSLCQH--NLDDC 61
+ C D SD C + C NGG N ++CLCP GF + ++D+C
Sbjct: 296 ARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC 355
Query: 62 ASSPCGHGICVDQTDGYRCYCQPGY 86
+CV+ GY+C C+ G+
Sbjct: 356 QDPDTCSQLCVNLEGGYKCQCEEGF 380
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 95 YNECESSPCL--NGG---SCSDHVGRFSCTCGHGY--TGQRCQIKVDLC-DPNPCSHHHY 146
EC ++ CL NGG C+D + C C G+ QR +D C DP+ CS
Sbjct: 307 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--L 364
Query: 147 CVDKGNTFACECPKGYQ----GPNCDVPGIVFYLKY 178
CV+ + C+C +G+Q C G + YL +
Sbjct: 365 CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 400
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 27 NGGSCAASNLTAQQFKCLCPPGFSGSLCQH--NLDDCASSPCGHGICVDQTDGYRCYCQP 84
NGG N ++CLCP GF + ++D+C +CV+ GY+C C+
Sbjct: 36 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 95
Query: 85 GYS 87
G+
Sbjct: 96 GFQ 98
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 96 NECESSPCLNGG---SCSDHVGRFSCTCGHGY--TGQRCQIKVDLC-DPNPCSHHHYCVD 149
NEC + NGG C+D + C C G+ QR +D C DP+ CS CV+
Sbjct: 30 NECLDN---NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVN 84
Query: 150 KGNTFACECPKGYQ 163
+ C+C +G+Q
Sbjct: 85 LEGGYKCQCEEGFQ 98
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 10 GKTCEDTSDP----CESGPC--QNGGSCAASNLTAQQFKCLCPPGFSGSLCQH--NLDDC 61
+ C D SD C + C NGG N ++CLCP GF + ++D+C
Sbjct: 24 ARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC 83
Query: 62 ASSPCGHGICVDQTDGYRCYCQPGY 86
+CV+ GY+C C+ G+
Sbjct: 84 QDPDTCSQLCVNLEGGYKCQCEEGF 108
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 16/95 (16%)
Query: 97 ECESSPCL--NGG---SCSDHVGRFSCTCGHGY---TGQRCQIKVDLC-DPNPCSHHHYC 147
EC ++ CL NGG C+D + C C G+ +RC+ +D C DP+ CS C
Sbjct: 37 ECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LC 93
Query: 148 VDKGNTFACECPKGYQ----GPNCDVPGIVFYLKY 178
V+ + C+C +G+Q C G + YL +
Sbjct: 94 VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 128
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 98 CESSPCLNGGSCSDHVGRFSCTC-GHGYTGQRCQ 130
C S+PC N G C D R+ C C G GY G+ C+
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 430
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 136 CDPNPCSHHHYCVDKGNTFACECP-KGYQGPNCDVPGIVF 174
C NPC ++ C D N + C+C GY G +C+ V
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVL 436
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 98 CESSPCLNGGSCSDHVGRFSCTC-GHGYTGQRCQ 130
C S+PC N G C D R+ C C G GY G+ C+
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 136 CDPNPCSHHHYCVDKGNTFACECP-KGYQGPNCDVPGIVF 174
C NPC ++ C D N + C+C GY G +C+ V
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVL 661
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 98 CESSPCLNGGSCSDHVGRFSCTC-GHGYTGQRCQ 130
C S+PC N G C D R+ C C G GY G+ C+
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 136 CDPNPCSHHHYCVDKGNTFACECP-KGYQGPNCDVPGIVF 174
C NPC ++ C D N + C+C GY G +C+ V
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVL 661
>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
Length = 164
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 67 GHGICVDQTDGYRCYCQPGYSGEQCQY 93
GHG CV+ + Y C C GY G QCQ+
Sbjct: 129 GHGECVEIINNYTCNCDVGYYGPQCQF 155
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 136 CDPNPCSHHHYCVDKGNTFACECPKGYQGPNC 167
C P CS H CV+ N + C C GY GP C
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 27 NGGSCAASNLTAQQFKCLCPPGFSGSLCQH--NLDDCASSPCGHGICVDQTDGYRCYCQP 84
NGG N ++CLCP GF + ++D+C +CV+ GY+C C+
Sbjct: 7 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 66
Query: 85 GY 86
G+
Sbjct: 67 GF 68
>pdb|3LAQ|A Chain A, Structure-Based Engineering Of Species Selectivity In
The Upa-Upar Interaction
pdb|3LAQ|B Chain B, Structure-Based Engineering Of Species Selectivity In
The Upa-Upar Interaction
Length = 134
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 25 CQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCYCQP 84
CQNGG C + ++ +C CP F G C+ + AS C HG D YR
Sbjct: 14 CQNGGVCVSYKYFSRIRRCSCPRKFQGEHCEID----ASKTCYHG----NGDSYRGKANT 65
Query: 85 GYSGEQC 91
G C
Sbjct: 66 DTKGRPC 72
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin
K- Dependent Protein S
Length = 87
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 41 FKCLCPPGFSGSLCQ---HNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNE 97
F+C CP G+ +L ++D+C+ + C +CV+ GY CYC G G + +
Sbjct: 25 FECECPEGYRYNLKSKSCEDIDECSENMCAQ-LCVNYPGGYTCYCD-GKKGFKLAQDQKS 82
Query: 98 CE 99
CE
Sbjct: 83 CE 84
>pdb|1EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
pdb|1EPG|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPH|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPI|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPJ|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|3EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
Length = 53
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 103 CLNGGSCS--DHVGRFSCTCGHGYTGQRCQIK 132
CLNGG C + + ++C C GY+G RCQ +
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 25 CQNGGSCAASNLTAQQFKCLCPPGFSGSLCQ 55
CQNGG+C +CLCP ++G LC+
Sbjct: 373 CQNGGTCH------NNVRCLCPAAYTGILCE 397
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 31/136 (22%)
Query: 57 NLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPC------------L 104
++D+C SSPC +G+C + + C C + + + E C +
Sbjct: 3 DIDECESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEINI 62
Query: 105 NGGS----CSDHVG----------RFSCTCGHGYT---GQRCQIKVDLCDPNP-CSHHHY 146
NG + C +G + CG GY+ G +C+ +D C+ P +
Sbjct: 63 NGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCE-DIDECEVFPGVCKNGL 121
Query: 147 CVDKGNTFACECPKGY 162
CV+ +F C+CP G
Sbjct: 122 CVNTRGSFKCQCPSGM 137
>pdb|1P9J|A Chain A, Solution Structure And Dynamics Of The EgfTGF-Alpha
Chimera T1e
Length = 54
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 57 NLDDCASSPCGH----GIC--VDQTDGYRCYCQPGYSGEQCQYE 94
+ +DC S G+ G+C ++ D Y C C GY GE+CQY
Sbjct: 4 HFNDCPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 47
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 95 YNECESSP---CLNGGSCS--DHVGRFSCTCGHGYTGQRCQIK 132
+N+C S CL+ G C + + +++C C GY G+RCQ +
Sbjct: 5 FNDCPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 47
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 67 GHGICVDQTDGYRCYCQPGYSGEQCQ 92
GHG C++ G +C C PGYSG C+
Sbjct: 194 GHGSCIN---GTKCICDPGYSGPTCK 216
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
Minimized Average Structure
Length = 63
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 97 ECESSPCLNGGSC-----SDHVGRFSCTCGHGYTGQRCQIKVDL 135
E E + C+NGG C + R+ C C G+TG RC V +
Sbjct: 8 EKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPM 51
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 21 ESGPCQNGGSC-AASNLT-AQQFKCLCPPGFSGSLCQHNL 58
E C NGG C +L+ ++ C C PGF+G+ C N+
Sbjct: 10 EKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 67 GHGICVDQTDGYRCYCQPGYSGEQCQ 92
GHG C++ G +C C PGYSG C+
Sbjct: 194 GHGSCIN---GTKCICDPGYSGPTCK 216
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 97 ECESSPCLNGGSC-----SDHVGRFSCTCGHGYTGQRCQIKVDL 135
E E + C+NGG C + R+ C C G+TG RC V +
Sbjct: 10 EKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPM 53
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 21 ESGPCQNGGSC-AASNLT-AQQFKCLCPPGFSGSLCQHNL 58
E C NGG C +L+ ++ C C PGF+G+ C N+
Sbjct: 12 EKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 51
>pdb|1IVO|C Chain C, Crystal Structure Of The Complex Of Human Epidermal
Growth Factor And Receptor Extracellular Domains.
pdb|1IVO|D Chain D, Crystal Structure Of The Complex Of Human Epidermal
Growth Factor And Receptor Extracellular Domains.
pdb|1NQL|B Chain B, Structure Of The Extracellular Domain Of Human Epidermal
Growth Factor (egf) Receptor In An Inactive (low Ph)
Complex With Egf.
pdb|2KV4|A Chain A, Egf
Length = 53
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 69 GIC--VDQTDGYRCYCQPGYSGEQCQYE 94
G+C ++ D Y C C GY GE+CQY
Sbjct: 18 GVCMYIEALDKYACNCVVGYIGERCQYR 45
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 103 CLNGGSCS--DHVGRFSCTCGHGYTGQRCQIK 132
CL+ G C + + +++C C GY G+RCQ +
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQYR 45
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 62 ASSPCGHGICVDQTDGYRCYCQPG--YSGEQCQYEYNECES----SPCLNGGSCSDH--- 112
+ C +G V ++ ++C C G + E E NEC+ C G C ++
Sbjct: 9 VDTICKNGQLVQMSNHFKCMCNEGLVHLSENTCEEKNECKKETLGKACGEFGQCIENPDP 68
Query: 113 --VGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCV 148
V + C C GYT + +D+C C C+
Sbjct: 69 AQVNMYKCGCIEGYTLKEDTCVLDVCQYKNCGESGECI 106
>pdb|1JL9|A Chain A, Crystal Structure Of Human Epidermal Growth Factor
pdb|1JL9|B Chain B, Crystal Structure Of Human Epidermal Growth Factor
Length = 51
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 69 GIC--VDQTDGYRCYCQPGYSGEQCQYE 94
G+C ++ D Y C C GY GE+CQY
Sbjct: 18 GVCMYIEALDKYACNCVVGYIGERCQYR 45
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 103 CLNGGSCS--DHVGRFSCTCGHGYTGQRCQIK 132
CL+ G C + + +++C C GY G+RCQ +
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQYR 45
>pdb|3NJP|C Chain C, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
pdb|3NJP|D Chain D, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
Length = 47
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 103 CLNGGSCS--DHVGRFSCTCGHGYTGQRCQIK 132
CL+ G C + + +++C C GY G+RCQ +
Sbjct: 10 CLHDGVCMYIEALDKYACNCVVGYIGERCQYR 41
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 69 GIC--VDQTDGYRCYCQPGYSGEQCQYE 94
G+C ++ D Y C C GY GE+CQY
Sbjct: 14 GVCMYIEALDKYACNCVVGYIGERCQYR 41
>pdb|3U7U|G Chain G, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|H Chain H, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|I Chain I, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|J Chain J, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|K Chain K, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|L Chain L, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
Length = 55
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 97 ECESSPCLNGGSC-----SDHVGRFSCTCGHGYTGQRCQ 130
E E + C+NGG C + R+ C C + +TG RCQ
Sbjct: 10 EKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQ 48
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 103 CLNGGSCS--DHVGRFSCTCGHGYTGQRCQ 130
CLNGG C + + ++C C GY+G RC+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCE 43
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 35 NLTAQQFKCLCPPGFSGSLCQ---HNLDDCASSPCGHGIC 71
+T +QF+ C G + LC+ N D PCGH +C
Sbjct: 318 KVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMC 357
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 78 YRCYCQPGYSGEQCQYEYNECE-------------SSPCLN-GGSCSDHVGRFSCTCGHG 123
++ C+P Q+E+ + +SP ++ + S++ G +SCT +
Sbjct: 141 FKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNR 200
Query: 124 YTGQRCQIKVDLCDPN 139
+C +++D+ P+
Sbjct: 201 VGSDQCMLRLDVVPPS 216
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 20 CESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQ 55
C C NGG+C + L F C CP GF+G C+
Sbjct: 51 CSEPRCFNGGTCQQA-LYFSDFVCQCPEGFAGKSCE 85
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 98 CESSPCLNGGSCSD--HVGRFSCTCGHGYTGQRCQI 131
C C NGG+C + F C C G+ G+ C+I
Sbjct: 51 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 35 NLTAQQFKCLCPPGFSGSLCQ---HNLDDCASSPCGHGICV 72
+T +QF+ C G + LC+ N D PCGH +C
Sbjct: 11 KVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCT 51
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 41/106 (38%), Gaps = 20/106 (18%)
Query: 42 KCLCPPGFSGSLCQ-----HNLDDCASSPC-GHGICVDQT----DGYRCYCQPGYSGEQC 91
+C+CPPGF G C+ H C G C D Y C C G+ G QC
Sbjct: 217 ECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQC 276
Query: 92 Q------YEYNECESS-PCLNGGSCSDHVGRFSCTCGHGYTGQRCQ 130
+ +C+ C NG C G C C G+ G +C+
Sbjct: 277 NEACHPGFYGPDCKLRCSCNNGEMCDRFQG---CLCSPGWQGLQCE 319
>pdb|1A3P|A Chain A, Role Of The 6-20 Disulfide Bridge In The Structure And
Activity Of Epidermal Growth Factor, Nmr, 20 Structures
Length = 45
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 103 CLNGGSCS--DHVGRFSCTCGHGYTGQRCQIK 132
CLNGG + + ++C C GY+G RCQ +
Sbjct: 11 CLNGGVXMHIESLDSYTCNCVIGYSGDRCQTR 42
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 104 LNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPN 139
LN G+C+ G+FS + HG T ++V L D +
Sbjct: 83 LNNGTCTAE-GKFSVSLKHGNTDSEGIVEVKLVDQD 117
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 42 KCLCPPGFSGSLCQHNLDDCASSPCGH-GICVDQTDGYRCYCQPGYSGEQCQ 92
KC C PG+ G C+ C + C H G+CV +C C+ GY G QC+
Sbjct: 409 KCCCSPGWEGDFCR--TAKCEPA-CRHGGVCVRPN---KCLCKKGYLGPQCE 454
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 42 KCLCPPGFSGSLCQHNLDDCASSPCGH-GICVDQTDGYRCYCQPGYSGEQCQ 92
KC C PG+ G C+ C + C H G+CV +C C+ GY G QC+
Sbjct: 409 KCCCSPGWEGDFCR--TAKCEPA-CRHGGVCVRPN---KCLCKKGYLGPQCE 454
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 42 KCLCPPGFSGSLCQHNLDDCASSPCGH-GICVDQTDGYRCYCQPGYSGEQCQ 92
KC C PG+ G C+ C + C H G+CV +C C+ GY G QC+
Sbjct: 409 KCCCSPGWEGDFCR--TAKCEPA-CRHGGVCVRPN---KCLCKKGYLGPQCE 454
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 42 KCLCPPGFSGSLCQHNLDDCASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQ 92
KC C PG+ G C+ C + C HG +CV +C C+ GY G QC+
Sbjct: 430 KCCCSPGWEGDFCR--TAKCEPA-CRHGGVCVRPN---KCLCKKGYLGPQCE 475
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 42 KCLCPPGFSGSLCQHNLDDCASSPCGHG-ICVDQTDGYRCYCQPGYSGEQCQ 92
KC C PG+ G C+ C + C HG +CV +C C+ GY G QC+
Sbjct: 430 KCCCSPGWEGDFCR--TAKCEPA-CRHGGVCVRPN---KCLCKKGYLGPQCE 475
>pdb|2P28|B Chain B, Structure Of The Phe2 And Phe3 Fragments Of The Integrin
Beta2 Subunit
Length = 217
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 42 KCLCPPGFSGSLCQHN 57
KC C PGF GS CQH+
Sbjct: 200 KCRCHPGFEGSACQHH 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.513
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,823,868
Number of Sequences: 62578
Number of extensions: 297283
Number of successful extensions: 1315
Number of sequences better than 100.0: 189
Number of HSP's better than 100.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 528
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)