RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8281
(178 letters)
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 126 bits (320), Expect = 3e-38
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 20 CESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHG-ICVDQTDGY 78
+ PC++ G C T F+C C G++G C+ ++++C S+PC + C+DQ +
Sbjct: 10 LGANPCEHAGKC---INTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEF 66
Query: 79 RCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDP 138
+C C PGY G C+ +EC SSPCL+ G C D + F C C G+TG CQ+ +
Sbjct: 67 QCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILD 126
Query: 139 NPC 141
Sbjct: 127 AQK 129
Score = 120 bits (304), Expect = 7e-36
Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 56 HNLDDCA--SSPCGH-GICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDH 112
++D+C+ ++PC H G C++ + C C GY+G +C+ + NEC S+PC N +C D
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 62
Query: 113 VGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
+G F C C GY G C++ D C +PC H+ C+DK N F CECP G+ G C V
Sbjct: 63 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Score = 101 bits (253), Expect = 4e-28
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPC 66
G+TG CE + C S PCQN +C +F+C+C PG+ G C+ N D+CASSPC
Sbjct: 35 GYTGPRCEIDVNECVSNPCQNDATC---LDQIGEFQCICMPGYEGVHCEVNTDECASSPC 91
Query: 67 GH-GICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGG 107
H G C+D+ + ++C C G++G CQ + + + +
Sbjct: 92 LHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMVWN 133
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 114 bits (286), Expect = 4e-33
Identities = 48/142 (33%), Positives = 63/142 (44%), Gaps = 21/142 (14%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLD------------DCASSP 65
D C+ PC+NGG C L F C CP GF+ C ++ C +P
Sbjct: 1 DICDPNPCENGGICL-PGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNP 59
Query: 66 CGHG--------ICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFS 117
C +G D GY C C G++G CQ+ NECE PC NGG C+D V +S
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYS 119
Query: 118 CTCGHGYTGQRCQIKVDLCDPN 139
C C + G+ CQ K +
Sbjct: 120 CECPGEFMGRNCQYKGGGHHHH 141
Score = 60.5 bits (147), Expect = 2e-12
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 21/94 (22%)
Query: 97 ECESSPCLNGGSCSDHV--GRFSCTCGHGYTGQRCQIKVDL------------CDPNPCS 142
C+ +PC NGG C + G FSC C G+T C V++ C PNPC
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 143 H-------HHYCVDKGNTFACECPKGYQGPNCDV 169
+ Y D + C+CP+G+ G +C
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH 95
Score = 51.6 bits (124), Expect = 4e-09
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDC 61
GF G C+ + CE PC+NGG C + C CP F G CQ+
Sbjct: 87 GFNGIHCQHNINECEVEPCKNGGICTDLV---ANYSCECPGEFMGRNCQYKGGGH 138
Score = 32.8 bits (75), Expect = 0.027
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 134 DLCDPNPCSHHHYCVD--KGNTFACECPKGYQGPNCDV 169
D+CDPNPC + C+ +F+CECP G+ PNC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSS 38
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 109 bits (274), Expect = 1e-30
Identities = 30/160 (18%), Positives = 42/160 (26%), Gaps = 6/160 (3%)
Query: 6 CGFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDD-CASS 64
D CE+ PCQN G C ++ C C GF G C+ C+
Sbjct: 31 KTNEFWNKYKDGDQCETSPCQNQGKC---KDGLGEYTCTCLEGFEGKNCELFTRKLCSLD 87
Query: 65 PCGH-GICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHG 123
C ++ + C C GY+ PC T G
Sbjct: 88 NGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSG 147
Query: 124 YT-GQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGY 162
D D +P + +D T
Sbjct: 148 EAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNL 187
Score = 107 bits (270), Expect = 5e-30
Identities = 28/154 (18%), Positives = 41/154 (26%), Gaps = 10/154 (6%)
Query: 17 SDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGH-GICVDQT 75
C C + + + D C +SPC + G C D
Sbjct: 9 ERECMEETCSYEEAR--------EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGL 60
Query: 76 DGYRCYCQPGYSGEQCQYEYNE-CESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVD 134
Y C C G+ G+ C+ + C C + C+C GYT
Sbjct: 61 GEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 120
Query: 135 LCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCD 168
P PC K + G +
Sbjct: 121 PTGPYPCGKQTLERRKRSVAQATSSSGEAPDSIT 154
Score = 81.0 bits (200), Expect = 1e-19
Identities = 21/122 (17%), Positives = 32/122 (26%), Gaps = 6/122 (4%)
Query: 7 GFTGKTCE-DTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSP 65
GF GK CE T C C + C C G++ + P
Sbjct: 70 GFEGKNCELFTRKLCSLDNGDCDQFC---HEEQNSVVCSCARGYTLADNGKACIPTGPYP 126
Query: 66 CGHG-ICVDQTDGYRCYCQPGYS-GEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHG 123
CG + + + G + Y+ + P N D +
Sbjct: 127 CGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNN 186
Query: 124 YT 125
T
Sbjct: 187 LT 188
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 100 bits (251), Expect = 6e-28
Identities = 27/127 (21%), Positives = 38/127 (29%), Gaps = 10/127 (7%)
Query: 17 SDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGH-GICVDQT 75
C C A++ + D C +SPC + G C D
Sbjct: 9 ERECMEETCSYEE--------AREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGL 60
Query: 76 DGYRCYCQPGYSGEQCQYEYNE-CESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVD 134
Y C C G+ G+ C+ + C C + C+C GYT
Sbjct: 61 GEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 120
Query: 135 LCDPNPC 141
P PC
Sbjct: 121 PTGPYPC 127
Score = 93.5 bits (233), Expect = 3e-25
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Query: 63 SSPCGHGIC-VDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCG 121
C C ++ + ++CE+SPC N G C D +G ++CTC
Sbjct: 9 ERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCL 68
Query: 122 HGYTGQRCQIKVD-LCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
G+ G+ C++ LC + +C ++ N+ C C +GY +
Sbjct: 69 EGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK 117
Score = 88.1 bits (219), Expect = 5e-23
Identities = 23/106 (21%), Positives = 32/106 (30%), Gaps = 5/106 (4%)
Query: 6 CGFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDD-CASS 64
D CE+ PCQN G C ++ C C GF G C+ C+
Sbjct: 31 KTNEFWNKYKDGDQCETSPCQNQGKCKDGL---GEYTCTCLEGFEGKNCELFTRKLCSLD 87
Query: 65 PCGH-GICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSC 109
C ++ + C C GY+ PC
Sbjct: 88 NGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 97.8 bits (244), Expect = 9e-27
Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 9/134 (6%)
Query: 20 CESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGH-GICVDQTDGY 78
C C + + + D C +PC + G+C D + Y
Sbjct: 18 CIEEKCSFEEAR--------EVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSY 69
Query: 79 RCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDP 138
C+CQ G+ G+ C+ + + + + C+C GY Q P
Sbjct: 70 ECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVP 129
Query: 139 NPCSHHHYCVDKGN 152
PC
Sbjct: 130 FPCGRVSVSHSPTT 143
Score = 91.3 bits (227), Expect = 4e-24
Identities = 22/107 (20%), Positives = 27/107 (25%), Gaps = 4/107 (3%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPC 66
D CE PC NGG C ++C C GF G C+ + +
Sbjct: 38 TNEFWKQYVDGDQCEPNPCLNGGLCKDD---INSYECWCQVGFEGKNCELDATCNIKNGR 94
Query: 67 -GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDH 112
C C GY Q PC
Sbjct: 95 CKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSP 141
Score = 85.1 bits (211), Expect = 1e-21
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 71 CVDQTDGYRCYCQ------PGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGY 124
C+++ + + + + ++CE +PCLNGG C D + + C C G+
Sbjct: 18 CIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGF 77
Query: 125 TGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
G+ C++ N + C C GY+
Sbjct: 78 EGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQK 122
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 90.1 bits (224), Expect = 9e-24
Identities = 36/130 (27%), Positives = 48/130 (36%), Gaps = 13/130 (10%)
Query: 19 PCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPC-GHGICVDQTDG 77
C+ C + FK + + D CASSPC G C DQ
Sbjct: 16 ECKEEQCSFEEAREI-------FKD-AERTKLFWISYSDGDQCASSPCQNGGSCKDQLQS 67
Query: 78 YRCYCQPGYSGEQCQYEYNECESSPCLNGGS---CSDHVG-RFSCTCGHGYTGQRCQIKV 133
Y C+C P + G C+ ++ NGG CSDH G + SC C GY+ +
Sbjct: 68 YICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
Query: 134 DLCDPNPCSH 143
PC
Sbjct: 128 TPTVEYPCGK 137
Score = 82.4 bits (204), Expect = 8e-21
Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 5/110 (4%)
Query: 65 PCGHGICVDQTDGYRCYCQP-GYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHG 123
C C + + ++C SSPC NGGSC D + + C C
Sbjct: 16 ECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPA 75
Query: 124 YTGQRCQIKVDLCDPNPCSH---HHYCVDK-GNTFACECPKGYQGPNCDV 169
+ G+ C+ D + YC D G +C C +GY V
Sbjct: 76 FEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV 125
Score = 81.2 bits (201), Expect = 2e-20
Identities = 31/108 (28%), Positives = 35/108 (32%), Gaps = 8/108 (7%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPC 66
D C S PCQNGGSC Q + C C P F G C+ + DD
Sbjct: 37 TKLFWISYSDGDQCASSPCQNGGSCKD---QLQSYICFCLPAFEGRNCETHKDDQLICVN 93
Query: 67 GHG----ICVDQTD-GYRCYCQPGYSGEQCQYEYNECESSPCLNGGSC 109
+G C D T C C GYS PC
Sbjct: 94 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPIL 141
Score = 61.2 bits (149), Expect = 1e-12
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAA-SNLTAQQFKCLCPPGFSGSLCQHNLDDCASSP 65
F G+ CE D +NGG S+ T + C C G+S + P
Sbjct: 75 AFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP 134
Query: 66 CGHGICVD 73
CG ++
Sbjct: 135 CGKIPILE 142
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 86.3 bits (214), Expect = 4e-22
Identities = 43/165 (26%), Positives = 62/165 (37%), Gaps = 21/165 (12%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPC 66
+ G C C G Q C G+ G C + SP
Sbjct: 24 YYYGFGCNK---FCRPRDDFFGHYA-----CDQNGNKTCMEGWMGPECNRAICRQGCSPK 75
Query: 67 GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTG 126
HG C C CQ G+ G C ++C P G C++ + C C + G
Sbjct: 76 -HGSCK---LPGDCRCQYGWQGLYC----DKCIPHPGCVHGICNE---PWQCLCETNWGG 124
Query: 127 QRCQIKVDLCD-PNPCSHHHYCVDKG-NTFACECPKGYQGPNCDV 169
Q C ++ C PC + C + G + + C CP+GY GPNC++
Sbjct: 125 QLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 72.8 bits (179), Expect = 8e-17
Identities = 32/149 (21%), Positives = 42/149 (28%), Gaps = 22/149 (14%)
Query: 20 CESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYR 79
S + GS C + G C C G
Sbjct: 2 RGSHHHHHHGSIEGR------SAVTCDDYYYGFGCN---KFCRPRDDFFGHYA-CDQNGN 51
Query: 80 CYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPN 139
C G+ G +C C GSC C C +G+ G C D C P+
Sbjct: 52 KTCMEGWMGPEC--NRAICRQGCSPKHGSCKLP---GDCRCQYGWQGLYC----DKCIPH 102
Query: 140 PCSHHHYCVDKGNTFACECPKGYQGPNCD 168
P H C + + C C + G CD
Sbjct: 103 PGCVHGICNE---PWQCLCETNWGGQLCD 128
Score = 45.4 bits (108), Expect = 1e-06
Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 98 CESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACE 157
S + GS GR + TC Y G C C P HY D+
Sbjct: 2 RGSHHHHHHGSI---EGRSAVTCDDYYYGFGCN---KFCRPRDDFFGHYACDQNGN--KT 53
Query: 158 CPKGYQGPNCDVP 170
C +G+ GP C+
Sbjct: 54 CMEGWMGPECNRA 66
Score = 25.4 bits (56), Expect = 9.2
Identities = 7/36 (19%), Positives = 10/36 (27%), Gaps = 3/36 (8%)
Query: 135 LCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDVP 170
+ + HH A C Y G C+
Sbjct: 1 MRGSHHHHHHGSIE---GRSAVTCDDYYYGFGCNKF 33
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 86.8 bits (215), Expect = 5e-21
Identities = 52/164 (31%), Positives = 69/164 (42%), Gaps = 26/164 (15%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPC 66
GF G CE + C NGG C C+CPPGF G C +C+++
Sbjct: 172 GFHGPHCEK---ALCTPRCMNGGLCVTP------GFCICPPGFYGVNCDK--ANCSTTCF 220
Query: 67 GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTG 126
G C +C C PG GEQC E ++C PC NGG C +G+ C C GY G
Sbjct: 221 NGGTCFY---PGKCICPPGLEGEQC--EISKC-PQPCRNGGKC---IGKSKCKCSKGYQG 271
Query: 127 QRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDVP 170
C C H C + C+C +G+ G +C+
Sbjct: 272 DLCSKP---VCEPGCGAHGTCHEPNK---CQCQEGWHGRHCNKR 309
Score = 83.7 bits (207), Expect = 7e-20
Identities = 51/165 (30%), Positives = 64/165 (38%), Gaps = 26/165 (15%)
Query: 6 CGFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSP 65
KTC+ G C+NGG C C CP GF G C+ C
Sbjct: 139 NAIFFKTCQQ---AECPGGCRNGGFCNERR------ICECPDGFHGPHCEK--ALCTPRC 187
Query: 66 CGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYT 125
G+CV C C PG+ G C S+ C NGG+C C C G
Sbjct: 188 MNGGLCVT---PGFCICPPGFYGVNCD---KANCSTTCFNGGTC---FYPGKCICPPGLE 238
Query: 126 GQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDVP 170
G++C+I P PC + C+ C+C KGYQG C P
Sbjct: 239 GEQCEIS---KCPQPCRNGGKCI---GKSKCKCSKGYQGDLCSKP 277
Score = 80.3 bits (198), Expect = 1e-18
Identities = 39/139 (28%), Positives = 53/139 (38%), Gaps = 20/139 (14%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPC 66
GF G C+ S C NGG+C KC+CPPG G C+ + C
Sbjct: 204 GFYGVNCDK---ANCSTTCFNGGTCFYPG------KCICPPGLEGEQCE--ISKCPQPCR 252
Query: 67 GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTG 126
G C+ +C C GY G+ C E C G+C + C C G+ G
Sbjct: 253 NGGKCIG---KSKCKCSKGYQGDLCSKPVCEP---GCGAHGTCHE---PNKCQCQEGWHG 303
Query: 127 QRCQIKVDLCDPNPCSHHH 145
+ C + + HHH
Sbjct: 304 RHCNKRYEASLIGTKHHHH 322
Score = 74.5 bits (183), Expect = 2e-16
Identities = 34/170 (20%), Positives = 50/170 (29%), Gaps = 26/170 (15%)
Query: 1 MFGVRCGFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDD 60
+ V GK + + + G+ CQ +
Sbjct: 102 VVQVGFPCLGKQDGVAAFEVDVIVMNSEGNT---------ILKTPQNAIFFKTCQQA--E 150
Query: 61 CASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTC 120
C G C + C C G+ G C+ + C+NGG C V C C
Sbjct: 151 CPGGCRNGGFCNE---RRICECPDGFHGPHCE---KALCTPRCMNGGLC---VTPGFCIC 201
Query: 121 GHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDVP 170
G+ G C C + C G C CP G +G C++
Sbjct: 202 PPGFYGVNCDKA---NCSTTCFNGGTCFYPGK---CICPPGLEGEQCEIS 245
Score = 43.7 bits (103), Expect = 1e-05
Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 9/65 (13%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPC 66
G+ G C C G+C N KC C G+ G C +
Sbjct: 268 GYQGDLCSKPVCEP---GCGAHGTCHEPN------KCQCQEGWHGRHCNKRYEASLIGTK 318
Query: 67 GHGIC 71
H
Sbjct: 319 HHHHH 323
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 74.0 bits (182), Expect = 6e-18
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 59 DDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYE--YNECESSPCLNGGSCSDHVGRF 116
CAS CGHG C+D + C C+ G+ G CQ E + C C + VG
Sbjct: 16 HPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWR 75
Query: 117 SCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNT 153
C+C GY ++ PC ++K +
Sbjct: 76 RCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEKKRS 112
Score = 65.9 bits (161), Expect = 1e-14
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 7/106 (6%)
Query: 10 GKTCEDT-SDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLD--DCASSPC 66
G C + + C G+C F C C G+ G CQ + +C+
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCID---GIGSFSCDCRSGWEGRFCQREVSFLNCSLDNG 62
Query: 67 G-HGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSD 111
G C+++ RC C PGY + + PC +
Sbjct: 63 GCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108
Score = 64.0 bits (156), Expect = 4e-14
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDL--CDPNPCSHHHYCVDKGNT 153
+S C G+C D +G FSC C G+ G+ CQ +V C + HYC+++
Sbjct: 15 EHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGW 74
Query: 154 FACECPKGYQGPNCDV 169
C C GY+ + +
Sbjct: 75 RRCSCAPGYKLGDDLL 90
Score = 40.1 bits (94), Expect = 4e-05
Identities = 11/65 (16%), Positives = 16/65 (24%), Gaps = 5/65 (7%)
Query: 7 GFTGKTCEDTSDPCE--SGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASS 64
G+ G+ C+ C +C C PG+
Sbjct: 42 GWEGRFCQREVSFLNCSLDNGGCTHYC---LEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 98
Query: 65 PCGHG 69
PCG
Sbjct: 99 PCGRP 103
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 70.1 bits (172), Expect = 6e-15
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSH-HHYCVDKGNTF 154
+ C S PCL+ GSC D + ++CTC GY G C++ + C P H+C+ ++
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESY 65
Query: 155 ACECPKGYQGPNC 167
C C +GY+
Sbjct: 66 TCSCAQGYRLGED 78
Score = 65.9 bits (161), Expect = 2e-13
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 17 SDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCG--HGICVDQ 74
PC S PC + GSC S + C C PG+ GS C+ ++C C+
Sbjct: 5 GSPCISQPCLHNGSCQDS---IWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPG 61
Query: 75 TDGYRCYCQPGYSGEQCQYEYNECESSPC 103
+ Y C C GY + + + C
Sbjct: 62 QESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 65.5 bits (160), Expect = 2e-13
Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 59 DDCASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGS---CSDHVG 114
C S PC +G C D GY C C PGY G C+ NEC P G C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC--HPERTDGCQHFCLPGQE 63
Query: 115 RFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHY 146
++C+C GY + D C
Sbjct: 64 SYTCSCAQGYRLGEDHKQCVPHDQCACGVLTS 95
Score = 40.1 bits (94), Expect = 1e-04
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 134 DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
C PC H+ C D + C C GY+G NC++
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCEL 41
Score = 32.0 bits (73), Expect = 0.085
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPC 66
G+ G CE + C P + G + + C C G+ C
Sbjct: 33 GYEGSNCELAKNECH--PERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Query: 67 GH 68
G
Sbjct: 91 GV 92
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 67.2 bits (163), Expect = 9e-14
Identities = 31/151 (20%), Positives = 42/151 (27%), Gaps = 14/151 (9%)
Query: 17 SDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTD 76
SD G C+ + C C +G C + P G +
Sbjct: 289 SDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPK 348
Query: 77 GYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLC 136
G C P S + E C NGG+C ++V C C YTG C+
Sbjct: 349 GAANACIPSISS--IGTNVCDNELLHCQNGGTCHNNV---RCLCPAAYTGILCE------ 397
Query: 137 DPNPCSHHHYCVDKGNTFACECPKGYQGPNC 167
C C P G +
Sbjct: 398 -KLRCEEAGSCGSDSGQ--GAPPHGTHHHHH 425
Score = 50.6 bits (120), Expect = 5e-08
Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 8/117 (6%)
Query: 54 CQHNLDDCASSPCGH--GICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSD 111
++ C +CV C C+ +G C + P + GS
Sbjct: 287 AISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPW-SPGSYLP 345
Query: 112 HVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCD 168
+ C + V + C + C N C CP Y G C+
Sbjct: 346 IPKGAANACIPSISSIGTN--VCDNELLHCQNGGTCH---NNVRCLCPAAYTGILCE 397
Score = 49.5 bits (117), Expect = 1e-07
Identities = 24/115 (20%), Positives = 31/115 (26%), Gaps = 15/115 (13%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPC 66
TG C + P G C P S ++
Sbjct: 320 NTTGPDCGKCKKNYQGRPWSPGSYLPIPK----GAANACIPSISSIGTNVCDNELLHCQN 375
Query: 67 GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCG 121
G G C + RC C Y+G CE C GSC G+ + G
Sbjct: 376 G-GTCH---NNVRCLCPAAYTGIL-------CEKLRCEEAGSCGSDSGQGAPPHG 419
Score = 44.1 bits (103), Expect = 7e-06
Identities = 12/97 (12%), Positives = 18/97 (18%), Gaps = 2/97 (2%)
Query: 74 QTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGS-CSDHVGRFSCTCGHGYTGQRCQIK 132
+ C + C + +C C H TG C
Sbjct: 270 AVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKC 329
Query: 133 VDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
P + A C +V
Sbjct: 330 KKNYQGRPW-SPGSYLPIPKGAANACIPSISSIGTNV 365
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 63.9 bits (156), Expect = 1e-13
Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 7/131 (5%)
Query: 41 FKCLCPPGFSGSLCQHNLDDCASSPCG-HGICVDQTDGYRCYCQPGY--SGEQCQYEYNE 97
+ C CPP F + + D S C C + G S C +
Sbjct: 24 YICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGK 83
Query: 98 CESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIK---VDLCDPNP-CSHHHYCVDKGNT 153
+PC + + + C G G+ + +D C P C++ +
Sbjct: 84 AWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGS 143
Query: 154 FACECPKGYQG 164
F C CP GY
Sbjct: 144 FQCRCPTGYYL 154
Score = 60.1 bits (146), Expect = 4e-12
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 2/107 (1%)
Query: 63 SSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGH 122
+ C G CV+ Y C C P + + + S C G +C+
Sbjct: 9 PTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEI 68
Query: 123 GY--TGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNC 167
G + C + PC C +G++
Sbjct: 69 GVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPI 115
Score = 48.5 bits (116), Expect = 7e-08
Identities = 25/128 (19%), Positives = 32/128 (25%), Gaps = 10/128 (7%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGF--SGSLCQHNLDDCASS 64
F SG C C G S + C +L +
Sbjct: 31 DFELNPTRVGCVDTRSGNCYLDIRPRG---DNGDTACSNEIGVGVSKASCCCSLGKAWGT 87
Query: 65 PCGHG-ICVDQTDGYRCYCQPGYSGEQCQYEY---NECESSP-CLNGGSCSDHVGRFSCT 119
PC C G+ +EC+ P GG C + G F C
Sbjct: 88 PCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCR 147
Query: 120 CGHGYTGQ 127
C GY
Sbjct: 148 CPTGYYLN 155
Score = 43.1 bits (102), Expect = 6e-06
Identities = 12/69 (17%), Positives = 18/69 (26%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFA 155
NEC G+C + G + C C + ++ C A
Sbjct: 4 NECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTA 63
Query: 156 CECPKGYQG 164
C G
Sbjct: 64 CSNEIGVGV 72
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 63.2 bits (153), Expect = 2e-12
Identities = 39/183 (21%), Positives = 53/183 (28%), Gaps = 32/183 (17%)
Query: 5 RCGFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASS 64
G C C N G C +C+CPPGF G C+ +
Sbjct: 190 EAQKWGPECN-----HLCTACMNNGVCHEDT-----GECICPPGFMGRTCEKACELHTFG 239
Query: 65 PCGHGICVDQ----------TDGYRCYCQPGYSGEQCQYEYNEC-------ESSPCLNGG 107
C Q D Y C C G+ G QC + C NG
Sbjct: 240 RTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGE 299
Query: 108 SCSDHVGRFSCTCGHGYTGQRCQIK-VDLCDPNPCSHHHYCVDKGNTFACECP-KGYQGP 165
C G C C G+ G +C+ + + P + F C G+ P
Sbjct: 300 MCDRFQG---CLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLP 356
Query: 166 NCD 168
+
Sbjct: 357 TNE 359
Score = 58.6 bits (141), Expect = 9e-11
Identities = 33/178 (18%), Positives = 53/178 (29%), Gaps = 14/178 (7%)
Query: 7 GFTGKTCEDTSDPCESGP-----CQNGGSCAASNL-TAQQFKCLCPPGFSGSLCQHNLDD 60
GF G+TCE + G C C + + C C G+ G C
Sbjct: 223 GFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHP 282
Query: 61 CASSPCGHGICVDQTDG-----YRCYCQPGYSGEQCQYE-YNECESSPCLNGGSCSDHVG 114
P C C C PG+ G QC+ E + G
Sbjct: 283 GFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSG 342
Query: 115 RFSCTCG-HGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDVPG 171
+F+ C G+ + ++ L P+ H + + F+ ++ D
Sbjct: 343 KFNPICKASGWPLPTNE-EMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGV 399
Score = 57.0 bits (137), Expect = 3e-10
Identities = 38/174 (21%), Positives = 54/174 (31%), Gaps = 20/174 (11%)
Query: 15 DTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQ 74
D GG+ S T + C G C H C +G+C +
Sbjct: 160 QPQDAGVYSARYIGGNLFTSAFT-RLIVRRCEAQKWGPECNHLCTAC----MNNGVCHED 214
Query: 75 TDGYRCYCQPGYSGEQCQYE-----YNECESSPCLNGGSCSDHV----GRFSCTCGHGYT 125
T C C PG+ G C+ + C C +V + C+C G+
Sbjct: 215 T--GECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWK 272
Query: 126 GQRCQIKVDLCDPNP-CSHHHYCVDKG---NTFACECPKGYQGPNCDVPGIVFY 175
G +C P C C + C C G+QG C+ GI
Sbjct: 273 GLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGIPRM 326
Score = 45.9 bits (108), Expect = 2e-06
Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 17/143 (11%)
Query: 7 GFTGKTCEDTSDPCESGP-------CQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLD 59
G+ G C + P GP C NG C CLC PG+ G C+
Sbjct: 270 GWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQ------GCLCSPGWQGLQCEREGI 323
Query: 60 DCASSPC--GHGICVDQTDGYRCYCQ-PGYSGEQCQYEYNECESSPCLNGGSCSDHVGRF 116
+ + + C+ G+ + L+ +H F
Sbjct: 324 PRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDF-NHTDHF 382
Query: 117 SCTCGHGYTGQRCQIKVDLCDPN 139
S + V +C N
Sbjct: 383 SVAIFTIHRILPPDSGVWVCSVN 405
Score = 42.0 bits (98), Expect = 3e-05
Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 25/149 (16%)
Query: 40 QFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVD---------QTDGYRCYCQPGYSGEQ 90
F P + + +L G T C+ G +
Sbjct: 138 SFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPE 197
Query: 91 CQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVD-----LCDPNPCSHHH 145
C + C+N G C + G C C G+ G+ C+ + CS
Sbjct: 198 C-----NHLCTACMNNGVCHEDTGE--CICPPGFMGRTCEKACELHTFGRTCKERCSGQE 250
Query: 146 YCVDKG----NTFACECPKGYQGPNCDVP 170
C + + C C G++G C+
Sbjct: 251 GCKSYVFCLPDPYGCSCATGWKGLQCNEA 279
Score = 38.9 bits (90), Expect = 5e-04
Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 10/105 (9%)
Query: 68 HGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDH--VGRFSCTCGHGYT 125
+G + + Q + S GG+ C
Sbjct: 136 NGSFIHSVPRHEVPDILEVHLPHAQPQDA-GVYSARYIGGNLFTSAFTRLIVRRCEAQKW 194
Query: 126 GQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDVP 170
G C C ++ C + +T C CP G+ G C+
Sbjct: 195 GPECN-----HLCTACMNNGVCHE--DTGECICPPGFMGRTCEKA 232
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 61.7 bits (149), Expect = 8e-12
Identities = 36/172 (20%), Positives = 46/172 (26%), Gaps = 21/172 (12%)
Query: 6 CGFTGKTCEDTSDPCE---SGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCA 62
G+ CE + CE C G C C PGF GS CQ
Sbjct: 505 KLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGK-----CRCHPGFEGSACQCERTTEG 559
Query: 63 SSPCGHGICVD--QTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTC 120
C + C C GY C + SPC SC++
Sbjct: 560 CLNPRRVECSGRGRCRCNVCECHSGYQLPLC--QECPGCPSPCGKYISCAE-----CLKF 612
Query: 121 GHGYTGQRCQIKV-DLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDVPG 171
G G+ C L N C ++ + C Y D
Sbjct: 613 EKGPFGKNCSAACPGLQLSNNPVKGRTCKERDS---EGCWVAYTLEQQDGMD 661
Score = 52.4 bits (125), Expect = 1e-08
Identities = 33/178 (18%), Positives = 45/178 (25%), Gaps = 33/178 (18%)
Query: 13 CEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICV 72
C + C G C C G+ G C+ +S G C
Sbjct: 425 CRCRDQSRDRSLCHGKGFLECG-------ICRCDTGYIGKNCECQTQGRSSQEL-EGSCR 476
Query: 73 DQTDGY-----------RCYCQPGYSGEQCQYEYN---------ECESSPCLNGGSCSDH 112
+ +C C + Y C G
Sbjct: 477 KDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCF 536
Query: 113 VGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKG--NTFACECPKGYQGPNCD 168
G+ C C G+ G CQ + + C +G CEC GYQ P C
Sbjct: 537 CGK--CRCHPGFEGSACQCERT-TEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQ 591
Score = 52.0 bits (124), Expect = 2e-08
Identities = 37/176 (21%), Positives = 51/176 (28%), Gaps = 27/176 (15%)
Query: 6 CGFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSP 65
+ + S C G C + G C+ + +C
Sbjct: 465 GRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHT-SDVPGKLIYGQYCECDTINCERYN 523
Query: 66 C------GHGICVDQTDGYRCYCQPGYSGEQCQYEYNEC-----ESSPCLNGGSCSDHVG 114
G G+C +C C PG+ G CQ E C G C +V
Sbjct: 524 GQVCGGPGRGLCFC----GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNV- 578
Query: 115 RFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDVP 170
C C GY CQ P+PC + C + + KG G NC
Sbjct: 579 ---CECHSGYQLPLCQE--CPGCPSPCGKYISCAE-----CLKFEKGPFGKNCSAA 624
Score = 42.4 bits (99), Expect = 3e-05
Identities = 30/175 (17%), Positives = 48/175 (27%), Gaps = 26/175 (14%)
Query: 20 CESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDC----ASSPCGHGICVDQT 75
+ P A+ +Q + GF+ + L C +C +
Sbjct: 382 QINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKG 441
Query: 76 --DGYRCYCQPGYSGEQCQYEYNECESSP----CLNGGSCSDHVGRFSCTCG-------- 121
+ C C GY G+ C+ + S C + G C CG
Sbjct: 442 FLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSD 501
Query: 122 ---HGYTGQRCQIKVDLCDP---NPCSHHHYCVDKGNTFACECPKGYQGPNCDVP 170
GQ C+ C+ C + C C G++G C
Sbjct: 502 VPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGK--CRCHPGFEGSACQCE 554
Score = 37.8 bits (87), Expect = 0.001
Identities = 19/144 (13%), Positives = 32/144 (22%), Gaps = 13/144 (9%)
Query: 25 CQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCG-HGICVDQTDGYRCYCQ 83
C NG + + C + A+ +
Sbjct: 364 CSNGVTHRNQP------RGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTV 417
Query: 84 PGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSH 143
+C+ + S C G + C C GY G+ C+ +
Sbjct: 418 QVLPQCECRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCECQTQGRSSQELE- 472
Query: 144 HHYCVDKGNTFACECPKGYQGPNC 167
C N+ C C
Sbjct: 473 -GSCRKDNNSIICSGLGDCVCGQC 495
Score = 37.4 bits (86), Expect = 0.002
Identities = 13/92 (14%), Positives = 22/92 (23%), Gaps = 4/92 (4%)
Query: 79 RCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDP 138
R C ++ + +G C+ + D
Sbjct: 375 RGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDR 434
Query: 139 NPCSHHHYCVDKGNTFACECPKGYQGPNCDVP 170
+ C + C C GY G NC+
Sbjct: 435 SLCHGKGFLECG----ICRCDTGYIGKNCECQ 462
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 61.0 bits (147), Expect = 2e-11
Identities = 22/108 (20%), Positives = 32/108 (29%), Gaps = 7/108 (6%)
Query: 43 CLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSP 102
F G + + + P G + P G E E
Sbjct: 144 VREREPFKGWIRDVRVQSSLALPVDSG------EVKLDDEPPNSGGGSPCEAGEEGEGGV 197
Query: 103 CLNGGSCSDHVGRFSCTC-GHGYTGQRCQIKVDLCDPNPCSHHHYCVD 149
CLNGG CS + C C G+ G+ C + ++C D
Sbjct: 198 CLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYD 245
Score = 54.8 bits (131), Expect = 2e-09
Identities = 13/107 (12%), Positives = 27/107 (25%), Gaps = 8/107 (7%)
Query: 65 PCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGY 124
P + + + G + P +G D
Sbjct: 129 PPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDD-------EPPNS 181
Query: 125 TGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPK-GYQGPNCDVP 170
G + + C + C + C+C + G++G +C
Sbjct: 182 GGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQG 228
Score = 48.3 bits (114), Expect = 3e-07
Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 1/109 (0%)
Query: 45 CPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCL 104
P +L + C G D G + C S+PC
Sbjct: 569 FPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCK 628
Query: 105 NGGSCSDHVGRFSCTC-GHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGN 152
N G C D R+ C C G GY G+ C+ + + + +
Sbjct: 629 NNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVM 677
Score = 44.4 bits (104), Expect = 6e-06
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 6 CGFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCP-PGFSGSLCQHNLDDCASS 64
G + + + E G C NGG C+ + C C GF G C ++ ++
Sbjct: 179 PNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQ---AVCDCSRTGFRGKDCSQGKEEYIAT 235
Query: 65 PCGHG 69
G
Sbjct: 236 FKGSE 240
Score = 42.1 bits (98), Expect = 4e-05
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 91 CQYEYNECESSPCLNGGSCSDHVGRFSCTC-GHGYTGQRCQIKVDLCDPNPCSHHHYC 147
C+ C+ C N G C FSC C ++G C +
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITY 1070
Score = 40.6 bits (94), Expect = 1e-04
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 122 HGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPK-GYQGPNCDVPGIVFY 175
+G + C+ C + CS+ C+ + + F+C+C + GP C+ PG +
Sbjct: 1006 NGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYI 1060
Score = 39.8 bits (92), Expect = 3e-04
Identities = 21/74 (28%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCP-PGFSGSLCQHNLDDCASSP 65
G + CE S C+ C N G C F C C FSG LC S
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQW---DGFSCDCSMTSFSGPLCNDPGTTYIFSK 1063
Query: 66 CGHGICVDQTDGYR 79
G I R
Sbjct: 1064 GGGQITYKWPPNDR 1077
Score = 39.8 bits (92), Expect = 3e-04
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 117 SCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPK-GYQGPNCDVPGIVFY 175
G + C NPC ++ C D N + C+C GY G +C+ V
Sbjct: 603 EVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLS 662
Score = 38.3 bits (88), Expect = 8e-04
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 54 CQHNLDDCASSPCGH-GICVDQTDGYRCYC-QPGYSGEQCQYEYNECESSPC 103
C+ C C + G+C+ Q DG+ C C +SG C S
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064
Score = 38.3 bits (88), Expect = 8e-04
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 42 KCLCPPGFSGSLCQHNLDDCASSPCGH-GICVDQTDGYRCYCQP-GYSGEQCQYEYNECE 99
+ G S + C S+PC + G+C D + Y C C GY G C+ E
Sbjct: 603 EVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLS 662
Query: 100 SSPC 103
Sbjct: 663 YDGS 666
Score = 36.0 bits (82), Expect = 0.005
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPP-GFSGSLCQHNLDDCASSP 65
G +T+ PC S PC+N G C ++ C C G+ G C+ +
Sbjct: 609 GVKPSCSRETAKPCLSNPCKNNGMCRDG---WNRYVCDCSGTGYLGRSCEREATVLSYDG 665
Query: 66 CGHGIC 71
Sbjct: 666 SMFMKI 671
Score = 27.9 bits (61), Expect = 2.6
Identities = 11/135 (8%), Positives = 24/135 (17%), Gaps = 10/135 (7%)
Query: 54 CQHNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSD-H 112
NL A + D + + Q + ++ +
Sbjct: 292 LVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLG 351
Query: 113 VGRFSCTCGH----GYTGQRCQIKVDLCDPNPCSHHHYCV-----DKGNTFACECPKGYQ 163
F G G C ++ G
Sbjct: 352 SDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVV 411
Query: 164 GPNCDVPGIVFYLKY 178
C+ + + +
Sbjct: 412 AFKCENVATLDPITF 426
Score = 26.7 bits (58), Expect = 5.3
Identities = 8/126 (6%), Positives = 19/126 (15%), Gaps = 11/126 (8%)
Query: 43 CLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCYCQPGY------SGEQCQYEYN 96
+ ++D ++ + G G +
Sbjct: 318 HDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFM 377
Query: 97 ECESSPCLNGGSC-----SDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKG 151
C HG +C+ L + +
Sbjct: 378 GCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPK 437
Query: 152 NTFACE 157
Sbjct: 438 WNAKKT 443
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 53.6 bits (130), Expect = 7e-11
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI 131
++CES+PCLNGGSC D + + C C G+ G+ C++
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 43.6 bits (104), Expect = 5e-07
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 57 NLDDCASSPCGH-GICVDQTDGYRCYCQPGYSGEQCQ 92
+ D C S+PC + G C D + Y C+C G+ G+ C+
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 39.8 bits (94), Expect = 1e-05
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 131 IKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
+ D C+ NPC + C D N++ C CP G++G NC++
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 37.5 bits (88), Expect = 8e-05
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQ 55
D CES PC NGGSC ++C CP GF G C+
Sbjct: 4 DQCESNPCLNGGSCKDD---INSYECWCPFGFEGKNCE 38
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 54.4 bits (131), Expect = 1e-10
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 41 FKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECES 100
++ +C + + Q + + C+C G + C
Sbjct: 2 YQVICRDEKTQMIYQQH-------QSWLRPVLRSNRVEYCWCNSGRAQCHSV-PVKSCSE 53
Query: 101 SPCLNGGSCSDHV--GRFSCTCGHGYTGQRCQI 131
C NGG+C + F C C G+ G+ C+I
Sbjct: 54 PRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Score = 47.5 bits (113), Expect = 5e-08
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 78 YRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCD 137
Y+ C+ + Q Y+ ++ P L C C G + V C
Sbjct: 2 YQVICRDEKT--QMIYQQHQSWLRPVLRSN------RVEYCWCNSGRAQ-CHSVPVKSCS 52
Query: 138 PNPCSHHHYCVD--KGNTFACECPKGYQGPNCDV 169
C + C + F C+CP+G+ G +C++
Sbjct: 53 EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Score = 42.5 bits (100), Expect = 4e-06
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 41 FKCLCPPGFSGSLCQHNLDDCASSPCGH-GICVD--QTDGYRCYCQPGYSGEQCQYEYNE 97
C C G + + C+ C + G C + C C G++G+ C+ +
Sbjct: 32 EYCWCNSGRAQC-HSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA 90
Score = 40.9 bits (96), Expect = 1e-05
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHN 57
G C C NGG+C L F C CP GF+G C+ +
Sbjct: 39 GRAQ-CHSVPVKSCSEPRCFNGGTC-QQALYFSDFVCQCPEGFAGKSCEID 87
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 55.0 bits (133), Expect = 2e-10
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 12/109 (11%)
Query: 59 DDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSC 118
D+C SSPC +G+C + + C C + + + E C GR
Sbjct: 5 DECESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVID----GRCEI 60
Query: 119 TCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNC 167
+C + +PC+ C KGY
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTL--------CQVDPICGKGYSRIKG 101
Score = 53.5 bits (129), Expect = 8e-10
Identities = 33/156 (21%), Positives = 45/156 (28%), Gaps = 30/156 (19%)
Query: 18 DPCESGPCQNG------GSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGIC 71
D CES PC NG GS F C C + + + C +
Sbjct: 5 DECESSPCINGVCKNSPGS----------FICECSSESTLDPTKTICIETIKGTCWQTVI 54
Query: 72 VDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI 131
QC SPC CG GY+ +
Sbjct: 55 ---DGRCEININGATLKSQCCSSLGAAWGSPCTLCQ--------VDPICGKGYSRIKGTQ 103
Query: 132 KVDL--CDPNPCSHHH-YCVDKGNTFACECPKGYQG 164
D+ C+ P + CV+ +F C+CP G
Sbjct: 104 CEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTL 139
Score = 48.1 bits (115), Expect = 1e-07
Identities = 25/124 (20%), Positives = 34/124 (27%), Gaps = 17/124 (13%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPC 66
T + G C + + S C +L SPC
Sbjct: 31 ESTLDPTKTICIETIKGTCWQTVID-------GRCEININGATLKSQCCSSLGAAWGSPC 83
Query: 67 GHGICVDQTDGYRCYCQPGYSGEQCQY--EYNECESSPCL-NGGSCSDHVGRFSCTCGHG 123
C GYS + + +ECE P + G C + G F C C G
Sbjct: 84 TLC-------QVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSG 136
Query: 124 YTGQ 127
T
Sbjct: 137 MTLD 140
Score = 36.2 bits (84), Expect = 0.002
Identities = 18/73 (24%), Positives = 22/73 (30%), Gaps = 7/73 (9%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFA 155
+ECESSPC+NG C + G F C C T + C
Sbjct: 5 DECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTC------WQTVIDGR 57
Query: 156 CECPKGYQGPNCD 168
CE
Sbjct: 58 CEININGATLKSQ 70
Score = 25.4 bits (56), Expect = 8.6
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 133 VDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNC 167
+D C+ +PC + C + +F CEC
Sbjct: 4 IDECESSPCINGV-CKNSPGSFICECSSESTLDPT 37
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 50.5 bits (120), Expect = 5e-08
Identities = 39/190 (20%), Positives = 57/190 (30%), Gaps = 36/190 (18%)
Query: 6 CGFTGKTCEDTSD----PCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDC 61
GF + C++ N C N T + C C PG+ GS C+ + +D
Sbjct: 419 VGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDY 478
Query: 62 ASSPC-------------GHGICVDQTDGYRCYCQPGYSGEQCQ-------YEYNECESS 101
S G C+ +C C G+ + +
Sbjct: 479 RPSQQDECSPREGQPVCSQRGECLC----GQCVCHSSDFGKITGKYCECDDFSCVRYKGE 534
Query: 102 PCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGN--TFACEC- 158
C G CS C C +TG C D S+ C +G +C C
Sbjct: 535 MCSGHGQCSC----GDCLCDSDWTGYYCNCTTR-TDTCMSSNGLLCSGRGKCECGSCVCI 589
Query: 159 PKGYQGPNCD 168
G G C+
Sbjct: 590 QPGSYGDTCE 599
Score = 48.9 bits (116), Expect = 2e-07
Identities = 28/173 (16%), Positives = 38/173 (21%), Gaps = 29/173 (16%)
Query: 2 FGVRCGFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDC 61
FG G + + + + C G C+ CLC ++G C
Sbjct: 513 FGKITGKYCECDDFSCVRYKGEMCSGHGQCSCG-------DCLCDSDWTGYYCNCTTRTD 565
Query: 62 ASSPCGHGICVDQ---TDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSC 118
+C + G QPG G+ C E C C
Sbjct: 566 TCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTC--EKCPTCPDACTFKKEC--------V 615
Query: 119 TCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDVPG 171
C G C V G NC
Sbjct: 616 ECKKFDRGALHDEN---TCNRYCRDEIESVK------ELKDTGKDAVNCTYKN 659
Score = 37.4 bits (86), Expect = 0.002
Identities = 25/157 (15%), Positives = 43/157 (27%), Gaps = 20/157 (12%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLC-PPGFSGSLCQHNLDDCASSP 65
+TG C + ++ NG C+ + C+C PG G C+ C +
Sbjct: 552 DWTGYYCN-CTTRTDTCMSSNGLLCSGRG-KCECGSCVCIQPGSYGDTCEKC-PTCPDAC 608
Query: 66 CGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYT 125
C C+ G + G+ + C
Sbjct: 609 TFKKEC--------VECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCT-YKN 659
Query: 126 GQRCQIKVDL-CDPNPCSHHHYCVDKGNTFACECPKG 161
C ++ D + S + + EC KG
Sbjct: 660 EDDCVVRFQYYEDSSGKSILYVVEEP------ECCKG 690
Score = 32.4 bits (73), Expect = 0.081
Identities = 18/118 (15%), Positives = 29/118 (24%), Gaps = 18/118 (15%)
Query: 63 SSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGH 122
+ C + +S N G+ + G C CG
Sbjct: 407 PQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGV--CRCGP 464
Query: 123 GYTGQRCQIKVDLCDPN------------PCSHHHYCVDKGNTFACECPKGYQGPNCD 168
G+ G +C+ + P+ CS C+ C C G
Sbjct: 465 GWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCG----QCVCHSSDFGKITG 518
Score = 31.2 bits (70), Expect = 0.16
Identities = 14/101 (13%), Positives = 23/101 (22%), Gaps = 13/101 (12%)
Query: 80 CYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPN 139
PG + S C + G+ CD
Sbjct: 377 NEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCA 436
Query: 140 ----------PCSHHHYCVDKGNTFACECPKGYQGPNCDVP 170
C++ + + G C C G+ G C+
Sbjct: 437 CQAQAEPNSHRCNNGNGTFECGV---CRCGPGWLGSQCECS 474
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 48.8 bits (116), Expect = 2e-07
Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 1/66 (1%)
Query: 83 QPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTC-GHGYTGQRCQIKVDLCDPNPC 141
G C+ C+ C N G C FSC C ++G C +
Sbjct: 173 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232
Query: 142 SHHHYC 147
Sbjct: 233 GGQITY 238
Score = 47.3 bits (112), Expect = 5e-07
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 123 GYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPK-GYQGPNCDVP 170
G + C+ C + CS+ C+ + + F+C+C + GP C+ P
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDP 223
Score = 45.4 bits (107), Expect = 3e-06
Identities = 21/74 (28%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCP-PGFSGSLCQHNLDDCASSP 65
G + CE S C+ C N G C F C C FSG LC S
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQ---WDGFSCDCSMTSFSGPLCNDPGTTYIFSK 231
Query: 66 CGHGICVDQTDGYR 79
G I R
Sbjct: 232 GGGQITYKWPPNDR 245
Score = 42.7 bits (100), Expect = 2e-05
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 54 CQHNLDDCASSPCGH-GICVDQTDGYRCYC-QPGYSGEQCQYEYNECESSPCLNGGSCSD 111
C+ C C + G+C+ Q DG+ C C +SG C S +
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKW 240
Query: 112 H 112
Sbjct: 241 P 241
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 46.2 bits (110), Expect = 2e-07
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 68 HGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYT-- 125
H Y + NEC + C+D + C C G+
Sbjct: 3 HHHHHHPMSDYDIPTTENLYFQGAMGT-NECLDNNGGCSYVCNDLKIGYECLCPDGFQLV 61
Query: 126 GQRCQIKVDLC-DPNPCSHHHYCVDKGNTFACECPKGYQ 163
QR +D C DP+ CS CV+ + C+C +G+Q
Sbjct: 62 AQRRCEDIDECQDPDTCSQL--CVNLEGGYKCQCEEGFQ 98
Score = 36.9 bits (86), Expect = 5e-04
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 104 LNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQ 163
+ + + Q + C N + C D + C CP G+Q
Sbjct: 1 MKHHHHHHPMSDYDIPTTENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQ 59
Score = 36.5 bits (85), Expect = 7e-04
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 41 FKCLCPPGFSGSLCQHNLDDCASSPCG-HGICVDQTDGYRCYCQPGY---SGEQCQYEYN 96
+ ++C + G +C D GY C C G+ + +C+ + +
Sbjct: 13 YDIPTTENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE-DID 70
Query: 97 ECESSPCLNGGSCSDHVGRFSCTCGHGYT 125
EC P C + G + C C G+
Sbjct: 71 EC-QDPDTCSQLCVNLEGGYKCQCEEGFQ 98
Score = 26.1 bits (58), Expect = 2.9
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGF---SGSLCQHNLDDCAS 63
+ T + C C N ++CLCP GF + C+ ++D+C
Sbjct: 20 NLYFQGAMGT-NECLDNNGGCSYVC---NDLKIGYECLCPDGFQLVAQRRCE-DIDECQD 74
Query: 64 SPCGHGICVDQTDGYRCYCQPGY 86
+CV+ GY+C C+ G+
Sbjct: 75 PDTCSQLCVNLEGGYKCQCEEGF 97
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 43.3 bits (103), Expect = 2e-06
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQ-IKVDLCDPNPCSHHHYCVDKGNTF 154
+EC+ G C + G + C C GY + + D C + C + F
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGF 65
Query: 155 ACECPKGYQG 164
C C +G++
Sbjct: 66 ECTCEEGFEP 75
Score = 34.5 bits (80), Expect = 0.003
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 12 TCED-----TSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQ-HNLDDCASS- 64
+ D D C+ G C N T ++C CP G+ + + + D+C+
Sbjct: 1 SAVDMDECKEPDVCKHGQCIN---------TDGSYRCECPFGYILAGNECVDTDECSVGN 51
Query: 65 PCGHGICVDQTDGYRCYCQPGYSG 88
PCG+G C + G+ C C+ G+
Sbjct: 52 PCGNGTCKNVIGGFECTCEEGFEP 75
Score = 26.0 bits (58), Expect = 2.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 133 VDLCDPNPCSHHHYCVDKGNTFACECPKGYQG 164
+D C H C++ ++ CECP GY
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYIL 36
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 43.5 bits (103), Expect = 3e-06
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 7/112 (6%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDG 77
DPC C+ L + C+C GF+ + + + D
Sbjct: 5 DPCFRANCEYQ----CQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQ 60
Query: 78 YRCYCQPGYSGEQCQ--YEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQ 127
C C GY + + +ECE+ +G C + G F C CG
Sbjct: 61 ASCECPEGYILDDGFICTDIDECENGGFCSGV-CHNLPGTFECICGPDSALA 111
Score = 43.1 bits (102), Expect = 4e-06
Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 6/110 (5%)
Query: 58 LDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFS 117
+D C + C + Y C C G++ + + + C D + S
Sbjct: 4 VDPCFRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC-DPNTQAS 62
Query: 118 CTCGHGYT---GQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQG 164
C C GY G C +D C+ N C + TF C C
Sbjct: 63 CECPEGYILDDGFICT-DIDECE-NGGFCSGVCHNLPGTFECICGPDSAL 110
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 42.6 bits (100), Expect = 3e-05
Identities = 19/91 (20%), Positives = 26/91 (28%), Gaps = 6/91 (6%)
Query: 59 DDCASSPC-GHGICV--DQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGR 115
C+ + C GHG CV P Q L+ +
Sbjct: 337 LLCSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAVE 396
Query: 116 FSCTCGHGYTGQRCQIKVDLCDPNPCSHHHY 146
F C C G+ C+ K HHH+
Sbjct: 397 FKCRCYPGWQAPWCERKSMWTGH---HHHHH 424
Score = 36.9 bits (85), Expect = 0.002
Identities = 14/75 (18%), Positives = 20/75 (26%)
Query: 20 CESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYR 79
C C G C + L P FS L ++
Sbjct: 339 CSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAVEFK 398
Query: 80 CYCQPGYSGEQCQYE 94
C C PG+ C+ +
Sbjct: 399 CRCYPGWQAPWCERK 413
Score = 27.2 bits (60), Expect = 3.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 152 NTFACECPKGYQGPNCDVPGI 172
F C C G+Q P C+ +
Sbjct: 395 VEFKCRCYPGWQAPWCERKSM 415
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 40.2 bits (94), Expect = 7e-05
Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 27/134 (20%)
Query: 59 DDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEY--------NECESS---PCLNGG 107
CA CV+ C C PG+S NEC + C
Sbjct: 3 RGCARWCPQDSSCVN---ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFS 59
Query: 108 SCSDHVGRFSCTCGHGYTGQRCQIKVDLCD-------------PNPCSHHHYCVDKGNTF 154
C + G + C C GY + C C + ++
Sbjct: 60 DCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSY 119
Query: 155 ACECPKGYQGPNCD 168
+C C G++ +
Sbjct: 120 SCRCRPGWKPRHGI 133
Score = 34.4 bits (79), Expect = 0.006
Identities = 26/112 (23%), Positives = 35/112 (31%), Gaps = 25/112 (22%)
Query: 41 FKCLCPPGFSGSLCQHNLDD--------CASSPCG----HGICVDQTDGYRCYCQPGYSG 88
C C PGFS CA+ C + Y C C PGY
Sbjct: 19 TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEP 78
Query: 89 EQCQYEY-----------NECES--SPCLNGGSCSDHVGRFSCTCGHGYTGQ 127
+ +EC S C + C + VG +SC C G+ +
Sbjct: 79 VSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPR 130
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 38.8 bits (91), Expect = 8e-05
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 59 DDCASSP--CGHGICVDQTDGYRCYCQPGYSGEQCQYEY----NECESSPCL-NGGSCSD 111
D+C SP CG G CV+ + C C GY + +EC+ P L GG C +
Sbjct: 4 DECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHN 63
Query: 112 HVGRFSCTCGHGYT 125
G + C C G+
Sbjct: 64 TEGSYRCECPPGHQ 77
Score = 33.8 bits (78), Expect = 0.004
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 15/80 (18%)
Query: 13 CEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHN----LDDCASSP--C 66
C + D C G C N T F+C C G+ +D+C P C
Sbjct: 6 CRISPDLCGRGQCVN---------TPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLC 56
Query: 67 GHGICVDQTDGYRCYCQPGY 86
G+C + YRC C PG+
Sbjct: 57 RGGVCHNTEGSYRCECPPGH 76
Score = 33.0 bits (76), Expect = 0.008
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 96 NECESSPCLNG-GSCSDHVGRFSCTCGHGYTGQRCQIK----VDLCDPNPCS-HHHYCVD 149
+EC SP L G G C + G F C C GY +K +D C +P C +
Sbjct: 4 DECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHN 63
Query: 150 KGNTFACECPKGYQ 163
++ CECP G+Q
Sbjct: 64 TEGSYRCECPPGHQ 77
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 40.5 bits (94), Expect = 1e-04
Identities = 27/173 (15%), Positives = 42/173 (24%), Gaps = 40/173 (23%)
Query: 3 GVRCGFTGKTCEDTSDP--CESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDD 60
G R + + S P Q GG Q + G
Sbjct: 60 GFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVAVSIKSNDG--------- 110
Query: 61 CASSPCGHGICVDQTDGYRCYCQPGYSGEQC-QYEYNE-----CESSPCLNGGSCSDHVG 114
G + T Y G+ E Y+ ++P +GG
Sbjct: 111 --------GKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWV---- 158
Query: 115 RFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNC 167
G R + V D + + T+ E P G++G
Sbjct: 159 ----------LGTRGKQNVINVDAK-SNDGGKTLSGTMTYNGEGPIGFRGTLT 200
Score = 37.4 bits (86), Expect = 0.001
Identities = 20/181 (11%), Positives = 42/181 (23%), Gaps = 54/181 (29%)
Query: 20 CESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDD------CASSPCGH----- 68
S +GG T + P GF + + +++P
Sbjct: 102 AVSIKSNDGGKTLTGTTT---YNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWV 158
Query: 69 -------------------GICVDQTDGYRCYCQPGYSGEQCQYEYNE------CESSPC 103
G + T Y G+ G + ++P
Sbjct: 159 LGTRGKQNVINVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPW 218
Query: 104 LNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQ 163
GG G + + +++ + + + E P G++
Sbjct: 219 NPGGFWMI-----------GARNGQNVVALNVASSDGGK----TLAGTMIYNGEGPIGFR 263
Query: 164 G 164
Sbjct: 264 A 264
Score = 30.8 bits (69), Expect = 0.18
Identities = 16/106 (15%), Positives = 27/106 (25%), Gaps = 21/106 (19%)
Query: 69 GICVDQTDGYRCYCQPGYSGEQCQYEYNE------CESSPCLNGGSCSDHVGRFSCTCGH 122
G + T Y G+ G S+P GG
Sbjct: 44 GKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVW------------- 90
Query: 123 GYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCD 168
G R + + + + + T+ E P G++ D
Sbjct: 91 -VLGARDKQNI-VAVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTD 134
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 39.4 bits (92), Expect = 1e-04
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 60 DCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECE 99
S G C++ Y C C PG+ G +C+Y ++ +
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
Score = 37.1 bits (86), Expect = 9e-04
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 132 KVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNC 167
C CS C++ + C C G+ GP C
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
Score = 36.7 bits (85), Expect = 0.001
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 98 CESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCD 137
C+ C G C + +G ++C+C G+ G C+ D D
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
Score = 32.1 bits (73), Expect = 0.043
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDC 61
C+ C G C T + C C PGF G C++ DD
Sbjct: 120 ASCQDMSCSKQGECLE---TIGNYTCSCYPGFYGPECEYVRDDD 160
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 39.4 bits (92), Expect = 1e-04
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 132 KVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCD 168
C CS H CV+ N + C+C G+ G C+
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 38.6 bits (90), Expect = 3e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 60 DCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQY 93
+S GHG CV+ + Y C C PG+SG +C+
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
Score = 33.2 bits (76), Expect = 0.018
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 94 EYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQ 130
C ++ C G C + + ++C C G++G +C+
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 31.7 bits (72), Expect = 0.070
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQH 56
C + C G C T + C C PGFSG C+
Sbjct: 120 AACTNTSCSGHGECVE---TINNYTCKCDPGFSGLKCEQ 155
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 39.8 bits (92), Expect = 2e-04
Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 7/105 (6%)
Query: 59 DDCASSPCG-HGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCS----DHV 113
++C + G C +C C GY + + + C G CS +
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGY--RLTEDGRTCQDVNECAEEGYCSQGCTNSE 61
Query: 114 GRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACEC 158
G F C C GY + + P P +D
Sbjct: 62 GAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRS 106
Score = 39.4 bits (91), Expect = 3e-04
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 96 NECESSPCLNGGSCSDHVGRFSCTCGHGYT----GQRCQIKVDLCDPNPCSHHHYCVDKG 151
C + C G CTC GY G+ CQ + + CS C +
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG--CTNSE 61
Query: 152 NTFACECPKGYQ 163
F C C GY+
Sbjct: 62 GAFQCWCEAGYE 73
Score = 31.7 bits (71), Expect = 0.11
Identities = 17/138 (12%), Positives = 38/138 (27%), Gaps = 7/138 (5%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQH---NLDDCASSPCGHGICVDQ 74
+ C C + +C C G+ + ++++CA C +
Sbjct: 4 ENCNVNNGGCAQKC---QMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNS 60
Query: 75 TDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVD 134
++C+C+ GY + P L + D + + +
Sbjct: 61 EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120
Query: 135 LCDPNPCSHHHYCVDKGN 152
D + + D
Sbjct: 121 -LDFHHRRELVFWSDVTL 137
Score = 29.0 bits (64), Expect = 0.94
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 133 VDLCDPNPCSHHHYCVDKGNTFACECPKGYQ 163
+ C+ N C C C GY+
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYR 33
Score = 25.9 bits (56), Expect = 7.9
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 121 GHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQ 163
H QR + C N H C+ G + C CP G++
Sbjct: 335 IHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFR 377
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 39.2 bits (90), Expect = 2e-04
Identities = 19/120 (15%), Positives = 33/120 (27%), Gaps = 10/120 (8%)
Query: 55 QHNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCS---- 110
C Q + Y C C GY+ + + C+ C G C
Sbjct: 51 TLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYL 110
Query: 111 DHVGRFSCTCGHGYTGQRCQ------IKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQG 164
+ C+C G C + + C + + C+C +G+
Sbjct: 111 SEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTF 170
Score = 34.6 bits (78), Expect = 0.007
Identities = 20/120 (16%), Positives = 31/120 (25%), Gaps = 15/120 (12%)
Query: 64 SPCGHGICVDQTDGYRCYCQPGYSGEQCQY-----------EYNECESSPCLNGGSCSDH 112
+ C +G V ++ + C C G C
Sbjct: 11 TICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQ 70
Query: 113 VGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHH----HYCVDKGNTFACECPKGYQGPNCD 168
V + C C GYT +D+C C + + + C C G D
Sbjct: 71 VNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPED 130
Score = 33.9 bits (76), Expect = 0.014
Identities = 21/119 (17%), Positives = 32/119 (26%), Gaps = 13/119 (10%)
Query: 37 TAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHG-----ICVDQTDGYRCYCQPGYSGEQC 91
+ C C G++ LD C CG + + C C G
Sbjct: 70 QVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPE 129
Query: 92 Q------YEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHH 144
C+ + C + G + C C G+T P+ HH
Sbjct: 130 DEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCL--GPHHHHHH 186
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 38.7 bits (89), Expect = 5e-04
Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 6/122 (4%)
Query: 59 DDCASSPCG-HGICVDQTDGYRCYCQPGY--SGEQCQYEYNECESSPCLNGGSCSDHVGR 115
++C + G +C D GY C C G+ ++ + +EC+ P C + G
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGG 59
Query: 116 FSCTCGHGYT--GQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDVPGIV 173
+ C C G+ K + + V K E V
Sbjct: 60 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDT 119
Query: 174 FY 175
Sbjct: 120 EV 121
Score = 36.0 bits (82), Expect = 0.005
Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 6/137 (4%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGF--SGSLCQHNLDDCASSPCGHGICVDQT 75
+ C C N ++CLCP GF ++D+C +CV+
Sbjct: 1 NECLDNNGGCSHVC---NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLE 57
Query: 76 DGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDL 135
GY+C C+ G+ + + S + V + + + V
Sbjct: 58 GGYKCQCEEGFQLDPHTK-ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA 116
Query: 136 CDPNPCSHHHYCVDKGN 152
D S+ Y D
Sbjct: 117 LDTEVASNRIYWSDLSQ 133
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 36.5 bits (85), Expect = 5e-04
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 59 DDCASSP--CGHGICVDQTDGYRCYCQPGYS----GEQCQYEYNECESSPCLNGGSCSDH 112
D+C+ P CG +C + + C C GY + C+ + +EC + C C ++
Sbjct: 4 DECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMC--AQLCVNY 60
Query: 113 VGRFSCTC 120
G ++C C
Sbjct: 61 PGGYTCYC 68
Score = 32.6 bits (75), Expect = 0.014
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 96 NECESSPCL-NGGSCSDHVGRFSCTCGHGYT----GQRCQIKVDLCDPNPCSHHHYCVDK 150
+EC P + C + G F C C GY + C+ +D C N C+ CV+
Sbjct: 4 DECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCAQL--CVNY 60
Query: 151 GNTFACEC--PKGYQ 163
+ C C KG++
Sbjct: 61 PGGYTCYCDGKKGFK 75
Score = 30.7 bits (70), Expect = 0.055
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 13 CEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHN---LDDCASSPCGHG 69
C C + C+N F+C CP G+ +L + +D+C+ + C
Sbjct: 6 CSLKPSICGTAVCKN---------IPGDFECECPEGYRYNLKSKSCEDIDECSENMCAQ- 55
Query: 70 ICVDQTDGYRCYC--QPGY 86
+CV+ GY CYC + G+
Sbjct: 56 LCVNYPGGYTCYCDGKKGF 74
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 35.6 bits (82), Expect = 5e-04
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 94 EYNECESSPCLNGGSCSDH--VGRFSCTCGHGYTGQRCQIK 132
CLNGG C + ++C C GY+G RCQ +
Sbjct: 5 GCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45
Score = 31.3 bits (71), Expect = 0.022
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 19 PCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQH 56
G C NGG C + + C C G+SG CQ
Sbjct: 8 SSYDGYCLNGGVCMHIE-SLDSYTCNCVIGYSGDRCQT 44
Score = 28.2 bits (63), Expect = 0.25
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 60 DCASSPCGHG---ICVDQTDGYRCYCQPGYSGEQCQY 93
C +G + ++ D Y C C GYSG++CQ
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
Score = 25.5 bits (56), Expect = 2.1
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 136 CDPNPCSHHHYC--VDKGNTFACECPKGYQGPNCD 168
C + C ++ +++ C C GY G C
Sbjct: 9 SYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 37.5 bits (87), Expect = 7e-04
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 132 KVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNC 167
C P CS H CV+ N + C C GY GP C
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
Score = 36.7 bits (85), Expect = 0.001
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 56 HNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQY 93
+ S GHG CV+ + Y C C GY G QCQ+
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQF 155
Score = 32.9 bits (75), Expect = 0.030
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 98 CESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQ 130
C+ C G C + + ++C C GY G +CQ
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 28.6 bits (64), Expect = 0.82
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQH 56
C+ C G C + C C G+ G CQ
Sbjct: 120 ASCQPWSCSGHGECVE---IINNYTCNCDVGYYGPQCQF 155
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 37.7 bits (87), Expect = 0.001
Identities = 40/181 (22%), Positives = 54/181 (29%), Gaps = 31/181 (17%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCL-CPPGFSGSLCQ-HNLDDCASSP------CGHG 69
D C S PC G C S+ + C CP GF G+ +LD+CA P
Sbjct: 4 DGCLSNPCFPGAQC--SSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVP 61
Query: 70 ICVDQTDGYRCY-CQPGYSGEQ---CQYEYNECESSPCLNGGSCSDH------------- 112
CV+ G+ C C P Y G Q E + E C C D
Sbjct: 62 RCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYL 121
Query: 113 ----VGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCD 168
+ C C GY G D + + C + + +
Sbjct: 122 GHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQ 181
Query: 169 V 169
Sbjct: 182 E 182
Score = 33.5 bits (76), Expect = 0.033
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 94 EYNECESSPCLNGGSCSDHV-GRFSCT-CGHGYTG--------QRCQIKVDLCDPNPCSH 143
+ + C S+PC G CS G +SC C G+ G C + D+C S
Sbjct: 2 DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICF--STSK 59
Query: 144 HHYCVDKGNTFACE-CPKGYQGPNCDVPGI 172
CV+ F C CP Y+G G+
Sbjct: 60 VPRCVNTQPGFHCLPCPPRYRGNQPVGVGL 89
Score = 31.9 bits (72), Expect = 0.091
Identities = 23/164 (14%), Positives = 46/164 (28%), Gaps = 7/164 (4%)
Query: 9 TGKTCEDT-SDPCESGPCQNGGSCA-ASNLTAQQFKCLCPPGFSGSLCQHNLD-DCASSP 65
+ CE ++ C C + + +KC C G++G D D P
Sbjct: 95 EKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWP 154
Query: 66 CGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYT 125
+ +C + + Q ++++ + +D V C +
Sbjct: 155 NLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFN 214
Query: 126 GQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
++ D C N + +G C V
Sbjct: 215 PRQADYDKDEV----GDRCDNCPYVHNPAQIDTDNNGEGDACSV 254
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 37.3 bits (86), Expect = 0.002
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 118 CTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNCD 168
C C G+ G C+ C+P C H CV C C KGY GP C+
Sbjct: 410 CCCSPGWEGDFCRTA--KCEP-ACRHGGVCVRPNK---CLCKKGYLGPQCE 454
Score = 36.1 bits (83), Expect = 0.004
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 9 TGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGH 68
+ C T P ++ + C T KC C PG+ G C+ C +
Sbjct: 377 MPEECRATVQPAQTLTSECSRLCRNGYCTPTG-KCCCSPGWEGDFCRTAK--CEPACRHG 433
Query: 69 GICVDQTDGYRCYCQPGYSGEQCQ 92
G+CV +C C+ GY G QC+
Sbjct: 434 GVCVRPN---KCLCKKGYLGPQCE 454
Score = 32.3 bits (73), Expect = 0.076
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQ 55
G+ G C CE C++GG C N KCLC G+ G C+
Sbjct: 415 GWEGDFCRTAK--CEP-ACRHGGVCVRPN------KCLCKKGYLGPQCE 454
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 37.0 bits (84), Expect = 0.002
Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 39 QQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNEC 98
Q+ G + + C S GHG C+ C+C GY+ Q N
Sbjct: 172 QESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCISGV----CFCDLGYTAAQGTCVSNTP 227
Query: 99 ESSPCLNGGSCSDHVGRFSCTCGHGYTG 126
S + + T G TG
Sbjct: 228 NHSEMFDRFEGKLSPLWYKITGGQVGTG 255
Score = 28.9 bits (63), Expect = 0.86
Identities = 17/90 (18%), Positives = 23/90 (25%), Gaps = 7/90 (7%)
Query: 80 CYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPN 139
G Y C S C G C V C C GYT + + + +
Sbjct: 176 SQKNVPPFGLDGVYISEPCPS-YCSGHGDCISGV----CFCDLGYTAAQGTCVSNTPNHS 230
Query: 140 PCSHHHYCVDKGNTFACECPKGYQGPNCDV 169
K + + G G C
Sbjct: 231 EMFDR--FEGKLSPLWYKITGGQVGTGCGT 258
Score = 26.6 bits (57), Expect = 5.1
Identities = 12/66 (18%), Positives = 15/66 (22%), Gaps = 9/66 (13%)
Query: 114 GRFSCTCGHGYTGQRCQIKVDLCD-----PNPCSHHHYCVDKGNTFACECPKGYQGPNCD 168
RF +D P+ CS H C+ C C GY
Sbjct: 166 TRFRWIQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCISGV----CFCDLGYTAAQGT 221
Query: 169 VPGIVF 174
Sbjct: 222 CVSNTP 227
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 36.4 bits (84), Expect = 0.003
Identities = 5/99 (5%), Positives = 15/99 (15%), Gaps = 12/99 (12%)
Query: 71 CVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQ 130
+ + + C N + V + +
Sbjct: 42 AQAKALSKHQDFNSA----------VQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLN 91
Query: 131 IKVDLC--DPNPCSHHHYCVDKGNTFACECPKGYQGPNC 167
+ + A + + P
Sbjct: 92 YCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPAT 130
Score = 33.3 bits (76), Expect = 0.032
Identities = 9/117 (7%), Positives = 20/117 (17%), Gaps = 4/117 (3%)
Query: 15 DTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQ 74
+++ C+N + P F + + G G+ D
Sbjct: 54 NSAVQLVENFCRNPDGDEEG---VWCYVAGKPGDFGYCDLNYCEEAV-EEETGDGLDEDS 109
Query: 75 TDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI 131
+ C + +I
Sbjct: 110 DRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRI 166
Score = 29.8 bits (67), Expect = 0.44
Identities = 10/109 (9%), Positives = 14/109 (12%), Gaps = 3/109 (2%)
Query: 59 DDCASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFS 117
+ C + Y + C Y E G D
Sbjct: 57 VQLVENFCRNPDGDEEGVWCYVAGKPGDF--GYCDLNYCEEAVEEETGDGLDEDSDRAIE 114
Query: 118 CTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPN 166
C K E +
Sbjct: 115 GATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESYID 163
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 33.7 bits (77), Expect = 0.003
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 94 EYNECESSPCLNGGSCS--DHVGRFSCTCGHGYTGQRCQIK 132
E CL+ G C + + +++C C GY G+RCQ +
Sbjct: 5 ECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 45
Score = 28.7 bits (64), Expect = 0.20
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQH 56
G C + G C ++ C C G+ G CQ+
Sbjct: 7 PLSHDGYCLHDGVCMYIE-ALDKYACNCVVGYIGERCQY 44
Score = 26.3 bits (58), Expect = 1.4
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 137 DPNPCSHHHYCVDKG--------NTFACECPKGYQGPNC 167
P SH YC+ G + +AC C GY G C
Sbjct: 4 SECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 42
Score = 25.2 bits (55), Expect = 3.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 72 VDQTDGYRCYCQPGYSGEQCQY 93
++ D Y C C GY GE+CQY
Sbjct: 23 IEALDKYACNCVVGYIGERCQY 44
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 35.0 bits (80), Expect = 0.009
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 133 VDLCDPNPCSHHHYCVDKG-NTFACEC-PKGYQGPNCDVPG 171
V+ C PC H CV G + + C+C GY GPNC +P
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 42
Score = 33.5 bits (76), Expect = 0.030
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLC-PPGFSGSLCQH 56
+PC PCQ+ G C L +++C C G+SG C
Sbjct: 3 NPCCYYPCQHQGICVRFGL--DRYQCDCTRTGYSGPNCTI 40
Score = 33.1 bits (75), Expect = 0.039
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 96 NECESSPCLNGGSC-SDHVGRFSCTCGH-GYTGQRCQI 131
N C PC + G C + R+ C C GY+G C I
Sbjct: 3 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 35.1 bits (80), Expect = 0.010
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 17 SDPCESGPCQNGGSCAASNLTAQQFKCLCPP-GFSGSLCQH 56
++PC S PCQN G C ++ Q+KC C GF G C
Sbjct: 1 ANPCCSNPCQNRGECMSTGF--DQYKCDCTRTGFYGENCTT 39
Score = 34.3 bits (78), Expect = 0.016
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 136 CDPNPCSHHHYCVDKG-NTFACEC-PKGYQGPNCDVPGIVFYLK 177
C NPC + C+ G + + C+C G+ G NC P + +K
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIK 47
Score = 32.4 bits (73), Expect = 0.061
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 96 NECESSPCLNGGSC-SDHVGRFSCTCGH-GYTGQRCQIKV------DLCDPNPCSHHHY 146
N C S+PC N G C S ++ C C G+ G+ C L P P + H+
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYI 60
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 34.2 bits (77), Expect = 0.016
Identities = 14/117 (11%), Positives = 23/117 (19%), Gaps = 14/117 (11%)
Query: 39 QQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNEC 98
Q ++ D C GHG CV + C C + G C
Sbjct: 516 QPAPFDKQQTWAIDNVYIG-DGCLDMCSGHGRCVQGS----CVCDEQWGGLYCDEPETSL 570
Query: 99 ESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFA 155
+ N + +C + +
Sbjct: 571 PTQLKDNFN---------RAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLL 618
Score = 27.3 bits (59), Expect = 3.0
Identities = 11/88 (12%), Positives = 16/88 (18%), Gaps = 6/88 (6%)
Query: 80 CYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPN 139
+ + C G C SC C + G C
Sbjct: 518 APFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQG----SCVCDEQWGGLYCDEPETSLPTQ 573
Query: 140 PCSHHHYCVDKGNTFACECPKGYQGPNC 167
+ + N G C
Sbjct: 574 LKDNFNRAPSNQNW--LTVSGGKLSTVC 599
Score = 27.3 bits (59), Expect = 3.2
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 138 PNPCSHHHYCVDKGNTFACECPKGYQGPNCDVPGIVFYL 176
C H C+ N C C GY GP C +
Sbjct: 189 EEMCYGHGSCI---NGTKCICDPGYSGPTCKISTKNPDF 224
Score = 26.1 bits (56), Expect = 8.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 59 DDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQ 92
C GHG C++ T +C C PGYSG C+
Sbjct: 186 PQCEEMCYGHGSCINGT---KCICDPGYSGPTCK 216
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 31.6 bits (71), Expect = 0.018
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 96 NECESSPCLNGGSC-----SDHVGRFSCTCGHGYTGQRCQIKV 133
E E + C+NGG C + R+ C C G+TG RC V
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
Score = 28.6 bits (63), Expect = 0.27
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 18 DPCESGPCQNGGSCAASNLTAQ--QFKCLCPPGFSGSLCQHNL 58
E C NGG C + ++ C C PGF+G+ C N+
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 33.4 bits (75), Expect = 0.022
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 11/84 (13%)
Query: 63 SSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGH 122
+ + V ++G P + + EC C NGG C R C C
Sbjct: 116 VAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAEC-PGGCRNGGFC---NERRICECPD 171
Query: 123 GYTGQRCQIKVDLCDPNPCSHHHY 146
G+ G C+ HHH+
Sbjct: 172 GFHGPHCEGTK-------HHHHHH 188
Score = 29.5 bits (65), Expect = 0.49
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 3/71 (4%)
Query: 23 GPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCYC 82
+ ++ L P + +C G C ++ C C
Sbjct: 113 QDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNER---RICEC 169
Query: 83 QPGYSGEQCQY 93
G+ G C+
Sbjct: 170 PDGFHGPHCEG 180
Score = 28.7 bits (63), Expect = 0.78
Identities = 14/89 (15%), Positives = 22/89 (24%), Gaps = 16/89 (17%)
Query: 80 CYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPN 139
C G G + P
Sbjct: 107 FPCLGXQDGVAAF---EVDVIVMNSEGNTILXTPQNAIFFKT----------CQQAECPG 153
Query: 140 PCSHHHYCVDKGNTFACECPKGYQGPNCD 168
C + +C ++ CECP G+ GP+C+
Sbjct: 154 GCRNGGFCNERRI---CECPDGFHGPHCE 179
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 33.6 bits (76), Expect = 0.023
Identities = 26/126 (20%), Positives = 35/126 (27%), Gaps = 16/126 (12%)
Query: 54 CQHNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGE--QCQYEYNECESSPCLNG---GS 108
C +N C+ H C D G+ C C Y+G QC E + + + G
Sbjct: 8 CANNRHQCSV----HAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVG 63
Query: 109 CSDHVGRFSCTCGHGY---TGQRCQIKVDLCDPNPCSHHHYCVDKGN----TFACECPKG 161
S F T H Y R + G FA E
Sbjct: 64 SSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGF 123
Query: 162 YQGPNC 167
G +
Sbjct: 124 KNGFSI 129
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 33.6 bits (76), Expect = 0.028
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 7/62 (11%)
Query: 114 GRFSCTCGHGYTGQRCQIKVDLCDPN-PCSHHHYCVDKGNTFACECPKGYQ----GPNCD 168
R + N CSH C+ + C CP G++ C
Sbjct: 560 QLPDLMGLKATNVHRVIGSNPCAEENGGCSH--LCLYRPQGLRCACPIGFELISDMKTCI 617
Query: 169 VP 170
VP
Sbjct: 618 VP 619
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 33.1 bits (75), Expect = 0.037
Identities = 23/166 (13%), Positives = 39/166 (23%), Gaps = 20/166 (12%)
Query: 18 DPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDG 77
D C+ C+ C + + + SG CQ + +
Sbjct: 155 DYCDILECEE--ECMHCS--GENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNL 210
Query: 78 YRCYCQ--------------PGYSGEQCQYEYNECESSPCLNGGSCSDHVGR-FSCTCGH 122
+ YC+ P E C C G +
Sbjct: 211 KKNYCRNPDRELRPWCFTTDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENYRGNVAV 270
Query: 123 GYTGQRCQIKVDLCDPNPC-SHHHYCVDKGNTFACECPKGYQGPNC 167
+G CQ + ++ + C P G + P C
Sbjct: 271 TVSGHTCQHWSAQTPHTHNRTPENFPCKNLDENYCRNPDGKRAPWC 316
Score = 32.7 bits (74), Expect = 0.051
Identities = 18/161 (11%), Positives = 30/161 (18%), Gaps = 17/161 (10%)
Query: 9 TGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGH 68
+ C+ C + ++ SG CQH +
Sbjct: 234 RWELCDIPRCTTPPPSSGPTYQCLKGT--GENYRGNVAVTVSGHTCQHWSAQTPHTHNRT 291
Query: 69 GICVDQTDGYRCYCQ--PGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTG 126
+ YC+ G C ++ C C T
Sbjct: 292 PENFPCKNLDENYCRNPDGKRAPWCHTTNSQVRWEYCKIPS----------CDSSPVSTE 341
Query: 127 QRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNC 167
Q G ++ G C
Sbjct: 342 QLAPTA---PPELTPVVQDCYHGDGQSYRGTSSTTTTGKKC 379
Score = 30.4 bits (68), Expect = 0.34
Identities = 17/132 (12%), Positives = 30/132 (22%), Gaps = 5/132 (3%)
Query: 41 FKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECES 100
C P + L + +P YR +G++CQ +
Sbjct: 331 PSCDSSPVSTEQLAPTAPPEL--TPVVQDCYHGDGQSYRGTSSTTTTGKKCQSWSSMTPH 388
Query: 101 S-PCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECP 159
+ + C G C C+ C + P
Sbjct: 389 RHQKTPENYPNAGLTMNYCRNPDADKGPWCFTTDPSVRWEYCNLKK-CSGTEASV-VAPP 446
Query: 160 KGYQGPNCDVPG 171
P+ + P
Sbjct: 447 PVVLLPDVETPS 458
Score = 28.1 bits (62), Expect = 1.9
Identities = 12/127 (9%), Positives = 20/127 (15%), Gaps = 1/127 (0%)
Query: 11 KTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGI 70
+ P + Q ++ +G CQ
Sbjct: 336 SPVSTEQLAPTAPPELTPVVQDCYHGDGQSYRGTSSTTTTGKKCQSWSSMTPHRHQKTPE 395
Query: 71 CVDQTDGYRCYC-QPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRC 129
YC P + + N CS
Sbjct: 396 NYPNAGLTMNYCRNPDADKGPWCFTTDPSVRWEYCNLKKCSGTEASVVAPPPVVLLPDVE 455
Query: 130 QIKVDLC 136
+ C
Sbjct: 456 TPSEEDC 462
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 33.1 bits (75), Expect = 0.043
Identities = 35/182 (19%), Positives = 51/182 (28%), Gaps = 24/182 (13%)
Query: 5 RCGFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASS 64
+ G+ CE C+ Q+ + C +G +C D
Sbjct: 349 QHNTMGRNCEQ----CKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGL 404
Query: 65 PCGHGICVDQTDGYRC-YCQPGYSGEQCQYEY-----NECESSPCLNGGSCSDHVGRFSC 118
G C +G RC C+ G+ + Y G C G C
Sbjct: 405 IAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGY--C 462
Query: 119 TCGHGYTGQRCQ----------IKVDLCDPNPCSHHHYCVDKGN--TFACECPKGYQGPN 166
C TGQRC +D C P C + + + C C G
Sbjct: 463 YCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQ 522
Query: 167 CD 168
C+
Sbjct: 523 CN 524
Score = 31.2 bits (70), Expect = 0.16
Identities = 26/161 (16%), Positives = 43/161 (26%), Gaps = 19/161 (11%)
Query: 25 CQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCYCQP 84
C C+C G C+ +D P + +C C
Sbjct: 263 CAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNE 322
Query: 85 GYSGEQCQYEYNECESSPCLNGGSCSD----HVGRFSCTCGHGYTGQRCQIKVDLCDPNP 140
C ++ ++ ++GG C + +GR C Y + D P
Sbjct: 323 H--SSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEP 380
Query: 141 CSHHHYCVDKGN-------------TFACECPKGYQGPNCD 168
C+ + G C C +G CD
Sbjct: 381 CTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCD 421
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 30.7 bits (69), Expect = 0.045
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 99 ESSPCLNGGSC----SDHVGRFSCTCGHGYTGQRCQIK 132
++ CLN C + +SC C G+ GQRC+ K
Sbjct: 12 DAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
Score = 27.6 bits (61), Expect = 0.53
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 17 SDPCESGPCQNGGSCAASNLTAQ-QFKCLCPPGFSGSLCQH 56
+ ++ C N C A + + C C GF G C++
Sbjct: 8 PETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
Score = 25.3 bits (55), Expect = 3.4
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 15/53 (28%)
Query: 45 CPPGFSGSLCQHNLDDCASSPCGHGIC----VDQTDGYRCYCQPGYSGEQCQY 93
CP F C + C + Y C C G+ G++C+Y
Sbjct: 7 CPETFDAWYCLN-----------DAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 31.8 bits (71), Expect = 0.097
Identities = 12/59 (20%), Positives = 13/59 (22%), Gaps = 11/59 (18%)
Query: 40 QFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNEC 98
C C C G G C C PG G C+ E
Sbjct: 452 HTLCDCN-------CSDTQPQAPHCSDGQGHLQCG----VCSCAPGRLGRLCESRGLEN 499
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 29.7 bits (66), Expect = 0.12
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 66 CGHGIC--VDQTDGYRCYCQPGYSGEQCQY 93
C HG C V + C C PGY GE+C
Sbjct: 48 CIHGECKYVKELRAPSCICHPGYHGERCHG 77
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 28.3 bits (63), Expect = 0.23
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 103 CLNGGSC----SDHVGRFSCTCGHGYTGQRCQIK 132
CLN C + +SC C G+ GQRC+ K
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
Score = 24.9 bits (54), Expect = 3.8
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 25 CQNGGSCAASNLT-AQQFKCLCPPGFSGSLCQH 56
C N C A + + C C GF G C++
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
Score = 24.1 bits (52), Expect = 7.9
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 78 YRCYCQPGYSGEQCQYEY 95
Y C C G+ G++C+Y+
Sbjct: 33 YSCECAIGFMGQRCEYKE 50
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 30.4 bits (68), Expect = 0.27
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 13/81 (16%)
Query: 62 ASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSP---------CLNGGSCSDH 112
A+ G + + + + N CE + CL + H
Sbjct: 234 ANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPH 293
Query: 113 VGRFSCTCGHGYT----GQRC 129
+F+C C G + C
Sbjct: 294 SPKFTCACPDGMLLARDMRSC 314
Score = 28.1 bits (62), Expect = 1.4
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 8 FTGKTCEDTSDPCESGPCQNGG------SCAASNLTAQQFKCLCPPGFS 50
F T + CE NGG N + +F C CP G
Sbjct: 258 FHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 306
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 30.6 bits (69), Expect = 0.31
Identities = 13/111 (11%), Positives = 20/111 (18%), Gaps = 9/111 (8%)
Query: 66 CGHGICVDQTDGYRC---YCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGH 122
C R G+S + C++ S + H
Sbjct: 255 CLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSH 314
Query: 123 GY------TGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNC 167
RCQ C+ + K G
Sbjct: 315 EACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGG 365
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 30.1 bits (67), Expect = 0.31
Identities = 26/139 (18%), Positives = 40/139 (28%), Gaps = 22/139 (15%)
Query: 17 SDPCESGPCQ-NGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQT 75
SD G C+ NG + + C C G C+ L P +
Sbjct: 247 SDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESAS 306
Query: 76 DGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI---- 131
+ C C +G + ++ +GG C C G +C+
Sbjct: 307 ECLPCDC----NGRSQECYFDPELYRSTGHGGHC--------TNCRDNTDGAKCERCREN 354
Query: 132 -----KVDLCDPNPCSHHH 145
+ C P HHH
Sbjct: 355 FFRLGNTEACSPAAAHHHH 373
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 29.5 bits (66), Expect = 0.45
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 74 QTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGG---SCSDHVGRFSCTCGHGYTGQRCQ 130
++D G+ + +EC+ +P C +H+G F C+C GY R +
Sbjct: 103 RSDYSNEKPFTGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNK 162
Query: 131 I 131
Sbjct: 163 R 163
Score = 28.0 bits (62), Expect = 1.5
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 47 PGFSGSLCQHNLDDCASSPCG----HGICVDQTDGYRCYCQPGYSGEQCQ 92
GF ++D+C +P C + G+ C C+ GY + +
Sbjct: 113 TGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNK 162
Score = 27.6 bits (61), Expect = 1.9
Identities = 9/54 (16%), Positives = 16/54 (29%)
Query: 7 GFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDD 60
GF + D C+ P + + F C C G+ + +
Sbjct: 114 GFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 27.9 bits (61), Expect = 0.48
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 61 CASSPCG---HGICVDQTDGYRCYCQPGY 86
C+S+PCG G C + GY C C GY
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGY 42
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 29.7 bits (66), Expect = 0.54
Identities = 9/52 (17%), Positives = 12/52 (23%)
Query: 112 HVGRFSCTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQ 163
+ Q D CSH + C CP G +
Sbjct: 248 DIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVK 299
Score = 28.5 bits (63), Expect = 1.1
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 12/90 (13%)
Query: 62 ASSPCGHGICVDQTDGYRCYCQPGYSGEQCQY--EYNECESSPCLNGGSCSDHVGRFSCT 119
+ G G+ +D + +S ++ ++ C + S + C
Sbjct: 234 CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCA 293
Query: 120 CGHGYT----GQRCQIKVDLCDPNPCSHHH 145
C G G+ C+ D N HHH
Sbjct: 294 CPTGVKLLENGKTCK------DGNSHHHHH 317
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 27.1 bits (60), Expect = 0.56
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 66 CGHGIC--VDQTDGYRCYCQPGYSGEQCQY 93
C G C V C C GY G +C+
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIGARCER 45
>3qk3_A Beta-crystallin B3; crybb3, beta B3, cataract, eye lens protein,
STR genomics, structural genomics consortium, SGC,
structural P; 1.95A {Homo sapiens}
Length = 184
Score = 28.6 bits (64), Expect = 0.88
Identities = 20/130 (15%), Positives = 33/130 (25%), Gaps = 25/130 (19%)
Query: 52 SLCQHNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSD 111
SL L+ S G + + + GEQ E + + SD
Sbjct: 32 SLTDSLLEKVGSIQVESGPWL-------AFESRAFRGEQFVLEKGDYPRWDAWSNSRDSD 84
Query: 112 HVGRFSCTCGHG------------YTGQRCQIKVDLCDPNPCSHHHYC-----VDKGNTF 154
+ ++G++ +I D G
Sbjct: 85 SLLSLRPLNIDSPHHKLHLFENPAFSGRKMEIVDDDVPSLWAHGFQDRVASVRAINGTWV 144
Query: 155 ACECPKGYQG 164
E P GY+G
Sbjct: 145 GYEFP-GYRG 153
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease,
polymorphism, protease, zinc; 2.30A {Homo sapiens} PDB:
1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 26.7 bits (59), Expect = 0.94
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 66 CGHGIC--VDQTDGYRCYCQPGYSGEQCQY 93
C HG C + Q D C C GY G +C++
Sbjct: 16 CFHGTCRFLVQEDKPACVCHSGYVGARCEH 45
Score = 24.0 bits (52), Expect = 9.2
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 103 CLNGGSC-SDHVGRFSCTCGHGYTGQRCQ 130
C +G + +C C GY G RC+
Sbjct: 16 CFHGTCRFLVQEDKPACVCHSGYVGARCE 44
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615
antibody, FAB, ternary complex, immune SY hydrolase;
HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A*
3laq_A* 1kdu_A
Length = 122
Score = 27.9 bits (61), Expect = 1.00
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 25 CQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCYCQP 84
C NGG+C ++ + C CP F G C+ + GH YR
Sbjct: 3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGH--------FYRGKAST 54
Query: 85 GYSGEQCQY 93
G C
Sbjct: 55 DTMGRPCLP 63
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 28.3 bits (62), Expect = 1.3
Identities = 15/92 (16%), Positives = 23/92 (25%), Gaps = 4/92 (4%)
Query: 77 GYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQIKVDLC 136
+C CQ G C C + C + +
Sbjct: 285 RLQCACQHNTCGGSCD----RCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEV 340
Query: 137 DPNPCSHHHYCVDKGNTFACECPKGYQGPNCD 168
D S + V +G +C G NC+
Sbjct: 341 DRREASQNQDNVYQGGGVCLDCQHHTTGINCE 372
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 25.9 bits (57), Expect = 1.5
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 66 CGHGIC--VDQTDGYRCYCQPGYSGEQCQY 93
C HG C + C C+ GY+G +C++
Sbjct: 14 CLHGQCIYLVDMSQNYCRCEVGYTGVRCEH 43
Score = 24.0 bits (52), Expect = 7.9
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 103 CLNGGSC-SDHVGRFSCTCGHGYTGQRCQ 130
CL+G + + C C GYTG RC+
Sbjct: 14 CLHGQCIYLVDMSQNYCRCEVGYTGVRCE 42
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 28.3 bits (62), Expect = 1.5
Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Query: 68 HGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQ 127
+ + + ++ +++ C+ +PC N G + C C G G+
Sbjct: 470 VDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGE 529
Query: 128 RCQIKVDLCDPNPCSHHHYCVDKGNTFACE 157
C+ + D + + C+
Sbjct: 530 NCEKQS--PDYKSNAVDGQWGCWSSWSTCD 557
Score = 26.0 bits (56), Expect = 9.5
Identities = 27/140 (19%), Positives = 42/140 (30%), Gaps = 6/140 (4%)
Query: 22 SGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQTDGYRCY 81
+ P N +C LT + C SGS C + S +CV TD +
Sbjct: 731 TPPISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDSNDYF 790
Query: 82 CQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI-KVDLCDPNP 140
P C++ +C ++ L+ G T K + C +
Sbjct: 791 TSP-----ACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESCGYDT 845
Query: 141 CSHHHYCVDKGNTFACECPK 160
C C + C P
Sbjct: 846 CYDWEKCSASTSKCVCLLPP 865
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 28.4 bits (62), Expect = 1.6
Identities = 17/120 (14%), Positives = 25/120 (20%), Gaps = 14/120 (11%)
Query: 42 KCLCPPGFSGSLCQHN-LDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECES 100
+ L + C L + Q +G +CQ +C
Sbjct: 14 ESLSAGSVQRARCASRCLSLQITRISAFFQHF-QNNGSLVWCQNHKQCSKCLE------- 65
Query: 101 SPCLNGGSCSDHVGRFSCTCGHGYTGQRCQI----KVDLCDPNPCSHHHYCVDKGNTFAC 156
PC G H + C C + G AC
Sbjct: 66 -PCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAAC 124
Score = 28.0 bits (61), Expect = 2.2
Identities = 13/90 (14%), Positives = 20/90 (22%), Gaps = 7/90 (7%)
Query: 43 CLCPPGFSGSLCQHNL---DDCASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQYEYNEC 98
C S C D C + Y C + + +C
Sbjct: 52 VWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDC 111
Query: 99 ESSPCLNGGSCSDHVGRFSCTCGHGYTGQR 128
P S SC + +G +
Sbjct: 112 ---PAPEKASGFAAACVESCEVDNECSGVK 138
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 28.2 bits (62), Expect = 1.6
Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 8/91 (8%)
Query: 3 GVRCGFTGKTCEDTSDPCESGPCQNGGSCA--ASNLTAQQFKCLCPPGFSGSLCQHNLDD 60
G R GF +P +G C+ + + + + +C N D
Sbjct: 285 GFREGFYLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKD 344
Query: 61 CASSPCGHGICVDQTDGYRCYCQPGYSGEQC 91
PCGH +C C S Q
Sbjct: 345 VKIEPCGHLMC------TSCLTSWQESEGQG 369
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 28.0 bits (61), Expect = 1.8
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 97 ECESSPCLNGGSCSDHVGRFS---CTCGHGYTGQRCQ 130
C++ N C++ G F C CG G+ G +C+
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
Score = 27.2 bits (59), Expect = 3.7
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 12/54 (22%)
Query: 40 QFKCLCPPGFSGSLCQHNLDDCASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQ 92
F C C CQ + + G+G C C PG+ G QC+
Sbjct: 430 TFDCDCA-------CQAQAEPNSHRCNNGNGTFECG----VCRCGPGWLGSQCE 472
>1ytq_A Beta crystallin B2; domain swapping, greek KEY, structural protein;
1.70A {Homo sapiens} SCOP: b.11.1.1 b.11.1.1 PDB: 1blb_A
2bb2_A 1e7n_A
Length = 204
Score = 27.5 bits (61), Expect = 1.9
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 7/71 (9%)
Query: 52 SLCQHNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSD 111
+L + ++ S G V Y Q GEQ +E E +D
Sbjct: 39 NLKETGVEKAGSVLVQAGPWV-------GYEQANCKGEQFVFEKGEYPRWDSWTSSRRTD 91
Query: 112 HVGRFSCTCGH 122
+
Sbjct: 92 SLSSLRPIKVD 102
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 27.8 bits (62), Expect = 2.1
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 5/55 (9%)
Query: 118 CTCGHGYTGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGY----QGPNCD 168
T + + +P S + C G F CP G C
Sbjct: 390 GPSPGQDTFCQGKADGLYPNPRERSSFYSCAA-GRLFQQSCPTGLVFSNSCKCCT 443
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 27.9 bits (61), Expect = 2.2
Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 5/166 (3%)
Query: 5 RCGFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASS 64
+ + C + + C +G S +++ C G + +
Sbjct: 220 KDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKF 279
Query: 65 PCGHGICVDQT---DGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCG 121
C G C+ + R C+ + NEC + C+D + C C
Sbjct: 280 KCHSGECITLDKVCNMARD-CRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCP 338
Query: 122 HGYTGQRCQIKVDLCD-PNPCSHHHYCVDKGNTFACECPKGYQGPN 166
G+ + D+ + +P + CV+ + C+C +G+Q
Sbjct: 339 DGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDP 384
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain,
kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Length = 145
Score = 27.2 bits (59), Expect = 2.4
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 20 CESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGI 70
+ C NGG+C ++ + C CP F G C+ + GH
Sbjct: 10 PSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFY 60
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 27.5 bits (60), Expect = 2.5
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 6/100 (6%)
Query: 28 GGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASSPCGHGICVDQT----DGYRCYCQ 83
G +C + + +C + CQ + DC+ + D C
Sbjct: 1 GATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWDYINNQCD 60
Query: 84 PGYSGEQCQY--EYNECESSPCLNGGSCSDHVGRFSCTCG 121
+ +C + + S C C+DH C G
Sbjct: 61 ELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCNQG 100
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain,
repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Length = 45
Score = 24.7 bits (53), Expect = 3.9
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 98 CESSPCLNGGSCS--DHVGRFSCTCGHGYTGQRCQ 130
CLNGG + + ++C C GY+G RCQ
Sbjct: 6 SYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQ 40
Score = 23.9 bits (51), Expect = 9.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 8/36 (22%)
Query: 140 PCSHHHYCVDKG--------NTFACECPKGYQGPNC 167
P S+ YC++ G +++ C C GY G C
Sbjct: 4 PSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRC 39
>1oki_A Beta crystallin B1; cataract, eye lens protein; 1.4A {Homo sapiens}
SCOP: b.11.1.1 b.11.1.1
Length = 210
Score = 26.7 bits (59), Expect = 4.0
Identities = 13/71 (18%), Positives = 18/71 (25%), Gaps = 7/71 (9%)
Query: 52 SLCQHNLDDCASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSD 111
+L D S G V + Q + GE E E + SD
Sbjct: 40 NLADRGFDRVRSIIVSAGPWV-------AFEQSNFRGEMFILEKGEYPRWNTWSSSYRSD 92
Query: 112 HVGRFSCTCGH 122
+ F
Sbjct: 93 RLMSFRPIKMD 103
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 26.4 bits (57), Expect = 5.4
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 133 VDLCDPNP-CSHHHYCVDKGNTFACECPKGYQ 163
V+ C CS C + F C C GY+
Sbjct: 1 VNECAEEGYCSQG--CTNSEGAFQCWCEAGYE 30
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 26.7 bits (58), Expect = 5.7
Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 5/167 (2%)
Query: 5 RCGFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASS 64
+ + C + + C +G S +++ C G + +
Sbjct: 202 KDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKF 261
Query: 65 PCGHGICVDQT---DGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCG 121
C G C+ + R C+ + NEC + C+D + C C
Sbjct: 262 KCHSGECITLDKVCNMARD-CRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCP 320
Query: 122 HGYTGQRCQIKVDLCD-PNPCSHHHYCVDKGNTFACECPKGYQGPNC 167
G+ + D+ + +P + CV+ + C+C +G+Q
Sbjct: 321 DGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPH 367
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 26.4 bits (57), Expect = 7.0
Identities = 26/163 (15%), Positives = 34/163 (20%), Gaps = 19/163 (11%)
Query: 5 RCGFTGKTCEDTSDPCESGPCQNGGSCAASNLTAQQFKCLCPPGFSGSLCQHNLDDCASS 64
CG C + G T + +CP C C S
Sbjct: 154 ECGDICPGTAKGKTNCPATVIN--GQFVERCWTHSHCQKVCPTICKSHGCTAE-GLCCHS 210
Query: 65 PCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNECESSPCLNGGSCSDHVGRFSCTCGHGY 124
C C+ Y +C C +
Sbjct: 211 ECLGNCSQPDDPTKCVACRNFYLDGRC---VETCPP-------------PYYHFQDWRCV 254
Query: 125 TGQRCQIKVDLCDPNPCSHHHYCVDKGNTFACECPKGYQGPNC 167
CQ C + H V N ECP GY +
Sbjct: 255 NFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSS 297
>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC
class II, immune system; HET: NDG BMA; 2.27A {Homo
sapiens} PDB: 1hdm_A 1k8i_A*
Length = 211
Score = 25.8 bits (56), Expect = 7.3
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 62 ASSPCGHGICVDQTDGYRCYCQPGYSGEQCQYEYNE 97
A +P + T + YCQ G Y+E
Sbjct: 4 APTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDE 39
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 7.7
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 68 HGICVDQTDGYRCYCQPGYSGEQC-QYEYN 96
H VD + + + QY Y+
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 25.9 bits (57), Expect = 8.4
Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 18/109 (16%)
Query: 76 DGYRCYCQPGYSGEQCQYEYNECES--SPCLNGGSCSDHVGRFSC-------TCGHGYTG 126
D + C+ GY Q S + C + G+ + R +G
Sbjct: 26 DYFIATCKQGY---QLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFR 82
Query: 127 QRCQIKVDLCD---PNPCSHHHYCVDKGNTFACECPKGYQGPNCDVPGI 172
+ V+ C +Y + Y C GI
Sbjct: 83 YTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYT---CTAQGI 128
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 25.7 bits (56), Expect = 8.6
Identities = 27/136 (19%), Positives = 36/136 (26%), Gaps = 25/136 (18%)
Query: 54 CQHNLDDCASSPC-GHGICVDQTDGYRCYCQPGYSGEQCQYEYNE-------------CE 99
C+ S C G G C C GY G+ C+ +
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCECQTQGRSSQELEGSCRKDNN 141
Query: 100 SSPCLNGGSCSDHVGR--FSCTCGHGYTGQRCQIKVDLCDPN---PCSHHHYCVDKGNTF 154
S C G C S G GQ C+ C+ C +
Sbjct: 142 SIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGK- 200
Query: 155 ACECPKGYQGPNCDVP 170
C C G++G C
Sbjct: 201 -CRCHPGFEGSACQHH 215
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.513
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,858,900
Number of extensions: 170531
Number of successful extensions: 2341
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1223
Number of HSP's successfully gapped: 698
Length of query: 178
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,272,666
Effective search space: 388812606
Effective search space used: 388812606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)