BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8282
(632 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With
Gain-Of-Function Mutation His332tyr)
Length = 413
Score = 246 bits (628), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/299 (44%), Positives = 178/299 (59%), Gaps = 26/299 (8%)
Query: 356 GEGFNVNVAWNKV----------------VDSVLNGESAHGVAIIRPPGHHAEQDEPCGF 399
G G + + WN+V V V GE +G A++RPPGHHAE+ P GF
Sbjct: 109 GVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGF 168
Query: 400 CIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFP 459
C FN+V+VAAK +S++LI+DWDVHHGNGTQ FY+DP VLY+S+HRYD G+FFP
Sbjct: 169 CYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFP 228
Query: 460 HSKDAGPHNVGEGKGEGFNVNVAWN---KKGMSDPEYIAAFQQVILPIAYQFNPELVLVS 516
S P VG G G GFNVN+A+ M D EY+AAF+ V++PIA +F P++VLVS
Sbjct: 229 GS--GAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVS 286
Query: 517 AGYDACVN--DPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTK 574
+G+DA PLGG +S + + T L LA GRI+LALEGGY++++I A C
Sbjct: 287 SGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGGYDLTAICDASEACVS 346
Query: 575 ALLG---DPLPLLESDLDINSSAVTSIKETISSHKAYWSSLKFLVALPENKLLSADYAQ 630
ALLG DPLP N++AV S+++ + H YW L+ + L+ A +
Sbjct: 347 ALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQRTTSTAGRSLIEAQTCE 405
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 5/141 (3%)
Query: 155 HVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDW 214
+V V GE +G A++RPPGHHAE+ P GFC FN+V+VAAK +S++LI+DW
Sbjct: 136 ELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDW 195
Query: 215 DVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWN-- 272
DVHHGNGTQ FY+DP VLY+S+HRYD G+FFP S P VG G G GFNVN+A+
Sbjct: 196 DVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGS--GAPDEVGTGPGVGFNVNMAFTGG 253
Query: 273 -KKGMSDPEYIAAFQQVILPM 292
M D EY+AAF+ V++P+
Sbjct: 254 LDPPMGDAEYLAAFRTVVMPI 274
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 277 SDPEYIAAFQQVILPMYALDNH-GLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYD 335
S P F V + L +S++LI+DWDVHHGNGTQ FY+DP VLY+S+HRYD
Sbjct: 163 STPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYD 222
Query: 336 HGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKVVD 370
G+FFP S P VG G G GFNVN+A+ +D
Sbjct: 223 DGNFFPGS--GAPDEVGTGPGVGFNVNMAFTGGLD 255
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQO|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQV|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
pdb|2VQV|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
Length = 413
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/299 (44%), Positives = 178/299 (59%), Gaps = 26/299 (8%)
Query: 356 GEGFNVNVAWNKV----------------VDSVLNGESAHGVAIIRPPGHHAEQDEPCGF 399
G G + + WN+V V V GE +G A++RPPGHHAE+ P GF
Sbjct: 109 GVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGF 168
Query: 400 CIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFP 459
C FN+V+VAAK +S++LI+DWDVHHGNGTQ FY+DP VLY+S+HRYD G+FFP
Sbjct: 169 CYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFP 228
Query: 460 HSKDAGPHNVGEGKGEGFNVNVAWN---KKGMSDPEYIAAFQQVILPIAYQFNPELVLVS 516
S P VG G G GFNVN+A+ M D EY+AAF+ V++PIA +F P++VLVS
Sbjct: 229 GS--GAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVS 286
Query: 517 AGYDACVN--DPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTK 574
+G+DA PLGG +S + + T L LA GRI+LALEGGY++++I A C
Sbjct: 287 SGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGGYDLTAICDASEACVS 346
Query: 575 ALLG---DPLPLLESDLDINSSAVTSIKETISSHKAYWSSLKFLVALPENKLLSADYAQ 630
ALLG DPLP N++AV S+++ + H YW L+ + L+ A +
Sbjct: 347 ALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQRTTSTAGRSLIEAQTCE 405
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 5/141 (3%)
Query: 155 HVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDW 214
+V V GE +G A++RPPGHHAE+ P GFC FN+V+VAAK +S++LI+DW
Sbjct: 136 ELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDW 195
Query: 215 DVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWN-- 272
DVHHGNGTQ FY+DP VLY+S+HRYD G+FFP S P VG G G GFNVN+A+
Sbjct: 196 DVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGS--GAPDEVGTGPGVGFNVNMAFTGG 253
Query: 273 -KKGMSDPEYIAAFQQVILPM 292
M D EY+AAF+ V++P+
Sbjct: 254 LDPPMGDAEYLAAFRTVVMPI 274
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 277 SDPEYIAAFQQVILPMYALDNH-GLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYD 335
S P F V + L +S++LI+DWDVHHGNGTQ FY+DP VLY+S+HRYD
Sbjct: 163 STPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYD 222
Query: 336 HGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKVVD 370
G+FFP S P VG G G GFNVN+A+ +D
Sbjct: 223 DGNFFPGS--GAPDEVGTGPGVGFNVNMAFTGGLD 255
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQM|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Hydroxamic
Acid Inhbitor
Length = 413
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/299 (43%), Positives = 178/299 (59%), Gaps = 26/299 (8%)
Query: 356 GEGFNVNVAWNKV----------------VDSVLNGESAHGVAIIRPPGHHAEQDEPCGF 399
G G + + WN+V V V GE +G A++RPPGHHAE+ P GF
Sbjct: 109 GVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGF 168
Query: 400 CIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFP 459
C FN+V+VAAK +S++LI+DWDVHHGNGTQ FY+DP VLY+S+HRYD G+FFP
Sbjct: 169 CYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFP 228
Query: 460 HSKDAGPHNVGEGKGEGFNVNVAWN---KKGMSDPEYIAAFQQVILPIAYQFNPELVLVS 516
S P VG G G GFNVN+A+ M D EY+AAF+ V++PIA +F P++VLVS
Sbjct: 229 GS--GAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVS 286
Query: 517 AGYDACVN--DPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTK 574
+G+DA PLGG +S + + T L LA GRI+LALEGG+++++I A C
Sbjct: 287 SGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVS 346
Query: 575 ALLG---DPLPLLESDLDINSSAVTSIKETISSHKAYWSSLKFLVALPENKLLSADYAQ 630
ALLG DPLP N++AV S+++ + H YW L+ + L+ A +
Sbjct: 347 ALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQRTTSTAGRSLIEAQTCE 405
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 5/141 (3%)
Query: 155 HVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDW 214
+V V GE +G A++RPPGHHAE+ P GFC FN+V+VAAK +S++LI+DW
Sbjct: 136 ELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDW 195
Query: 215 DVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWN-- 272
DVHHGNGTQ FY+DP VLY+S+HRYD G+FFP S P VG G G GFNVN+A+
Sbjct: 196 DVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGS--GAPDEVGTGPGVGFNVNMAFTGG 253
Query: 273 -KKGMSDPEYIAAFQQVILPM 292
M D EY+AAF+ V++P+
Sbjct: 254 LDPPMGDAEYLAAFRTVVMPI 274
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 277 SDPEYIAAFQQVILPMYALDNH-GLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYD 335
S P F V + L +S++LI+DWDVHHGNGTQ FY+DP VLY+S+HRYD
Sbjct: 163 STPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYD 222
Query: 336 HGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKVVD 370
G+FFP S P VG G G GFNVN+A+ +D
Sbjct: 223 DGNFFPGS--GAPDEVGTGPGVGFNVNMAFTGGLD 255
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
pdb|2VQQ|B Chain B, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
Length = 413
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/299 (43%), Positives = 178/299 (59%), Gaps = 26/299 (8%)
Query: 356 GEGFNVNVAWNKV----------------VDSVLNGESAHGVAIIRPPGHHAEQDEPCGF 399
G G + + WN+V V V GE +G A++RPPGHHAE+ P GF
Sbjct: 109 GVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGF 168
Query: 400 CIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFP 459
C FN+V+VAAK +S++LI+DWDVHHGNGTQ FY+DP VLY+S+HRYD G+FFP
Sbjct: 169 CYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFP 228
Query: 460 HSKDAGPHNVGEGKGEGFNVNVAWN---KKGMSDPEYIAAFQQVILPIAYQFNPELVLVS 516
S P VG G G GFNVN+A+ M D EY+AAF+ V++PIA +F P++VLVS
Sbjct: 229 GS--GAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVS 286
Query: 517 AGYDACVN--DPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTK 574
+G+DA PLGG +S + + T L LA GRI+LALEGG+++++I A C
Sbjct: 287 SGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVS 346
Query: 575 ALLG---DPLPLLESDLDINSSAVTSIKETISSHKAYWSSLKFLVALPENKLLSADYAQ 630
ALLG DPLP N++AV S+++ + H YW L+ + L+ A +
Sbjct: 347 ALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQRTTSTAGRSLIEAQTCE 405
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 5/141 (3%)
Query: 155 HVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDW 214
+V V GE +G A++RPPGHHAE+ P GFC FN+V+VAAK +S++LI+DW
Sbjct: 136 ELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDW 195
Query: 215 DVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWN-- 272
DVHHGNGTQ FY+DP VLY+S+HRYD G+FFP S P VG G G GFNVN+A+
Sbjct: 196 DVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGS--GAPDEVGTGPGVGFNVNMAFTGG 253
Query: 273 -KKGMSDPEYIAAFQQVILPM 292
M D EY+AAF+ V++P+
Sbjct: 254 LDPPMGDAEYLAAFRTVVMPI 274
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 277 SDPEYIAAFQQVILPMYALDNH-GLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYD 335
S P F V + L +S++LI+DWDVHHGNGTQ FY+DP VLY+S+HRYD
Sbjct: 163 STPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYD 222
Query: 336 HGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKVVD 370
G+FFP S P VG G G GFNVN+A+ +D
Sbjct: 223 DGNFFPGS--GAPDEVGTGPGVGFNVNMAFTGGLD 255
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Z|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C10|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
Length = 423
Score = 228 bits (582), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 125/286 (43%), Positives = 169/286 (59%), Gaps = 26/286 (9%)
Query: 356 GEGFNVNVAWNKVVDS----------------VLNGESAHGVAIIRPPGHHAEQDEPCGF 399
G G + + WN++ S V + E +G A++RPPGHHA+ GF
Sbjct: 140 GVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGF 199
Query: 400 CIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFP 459
C FN+V++A + S++LI+DWDVHHGNGTQ FY DP VLYIS+HR+D G+FFP
Sbjct: 200 CFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFP 259
Query: 460 HSKDAGPHNVGEGKGEGFNVNVAWN---KKGMSDPEYIAAFQQVILPIAYQFNPELVLVS 516
S VG G GEGFNVNVAW M DPEY+AAF+ V++PIA +F+P+LVLVS
Sbjct: 260 GS--GAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVS 317
Query: 517 AGYDACVN--DPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTK 574
AG+DA PLGG VS + + + T L LA G ++LALEGG+++++I A C
Sbjct: 318 AGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVA 377
Query: 575 ALLG---DPLPLLESDLDINSSAVTSIKETISSHKAYWSSLKFLVA 617
ALLG DPL N +A+ S++ I H YW ++ L +
Sbjct: 378 ALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQRLAS 423
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 92/136 (67%), Gaps = 5/136 (3%)
Query: 160 VLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHG 219
V + E +G A++RPPGHHA+ GFC FN+V++A + S++LI+DWDVHHG
Sbjct: 172 VASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHG 231
Query: 220 NGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWN---KKGM 276
NGTQ FY DP VLYIS+HR+D G+FFP S VG G GEGFNVNVAW M
Sbjct: 232 NGTQQTFYQDPSVLYISLHRHDDGNFFPGS--GAVDEVGAGSGEGFNVNVAWAGGLDPPM 289
Query: 277 SDPEYIAAFQQVILPM 292
DPEY+AAF+ V++P+
Sbjct: 290 GDPEYLAAFRIVVMPI 305
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 301 SRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFN 360
S++LI+DWDVHHGNGTQ FY DP VLYIS+HR+D G+FFP S VG G GEGFN
Sbjct: 219 SKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGS--GAVDEVGAGSGEGFN 276
Query: 361 VNVAWNKVVD 370
VNVAW +D
Sbjct: 277 VNVAWAGGLD 286
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|B Chain B, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|C Chain C, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|D Chain D, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ1|A Chain A, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|B Chain B, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|C Chain C, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|D Chain D, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ3|A Chain A, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|B Chain B, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|C Chain C, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|D Chain D, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|2GH6|A Chain A, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|B Chain B, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|C Chain C, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|D Chain D, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
Length = 369
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 114/199 (57%), Gaps = 9/199 (4%)
Query: 367 KVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDW 426
++ V GE + G A++ PPGHHA + GFCIFNN SVAA YA G+ RV ILDW
Sbjct: 120 ELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDW 179
Query: 427 DVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKK 486
DVHHGNGTQ +++NDP VL IS+H+ H F P S + G G G G+N+NV
Sbjct: 180 DVHHGNGTQDIWWNDPSVLTISLHQ--HLCFPPDSGYSTER--GAGNGHGYNINVPL-PP 234
Query: 487 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWL-- 544
G + Y+ A QV+LP + P+L++V +G+DA + DPL V+ + +
Sbjct: 235 GSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTID 294
Query: 545 --KALAQGRIILALEGGYN 561
+ GRI+ EGGY+
Sbjct: 295 CAADICDGRIVFVQEGGYS 313
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 89/156 (57%), Gaps = 12/156 (7%)
Query: 136 LSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSV 195
L A LS G V + V GE + G A++ PPGHHA + GFCIFNN SV
Sbjct: 108 LEIARLSAGGAV-------ELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSV 160
Query: 196 AAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPH 255
AA YA G+ RV ILDWDVHHGNGTQ +++NDP VL IS+H+ H F P S +
Sbjct: 161 AAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQ--HLCFPPDSGYSTER 218
Query: 256 NVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILP 291
G G G G+N+NV G + Y+ A QV+LP
Sbjct: 219 --GAGNGHGYNINVPL-PPGSGNAAYLHAMDQVVLP 251
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 293 YALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVG 352
YA G+ RV ILDWDVHHGNGTQ +++NDP VL IS+H+ H F P S + G
Sbjct: 164 YARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQ--HLCFPPDSGYSTER--G 219
Query: 353 EGKGEGFNVNV 363
G G G+N+NV
Sbjct: 220 AGNGHGYNINV 230
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|B Chain B, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|C Chain C, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|D Chain D, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
Length = 375
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 114/199 (57%), Gaps = 9/199 (4%)
Query: 367 KVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDW 426
++ V GE + G A++ PPGHHA + GFCIFNN SVAA YA G+ RV ILDW
Sbjct: 126 ELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDW 185
Query: 427 DVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKK 486
DVHHGNGTQ +++NDP VL IS+H+ H F P S + G G G G+N+NV
Sbjct: 186 DVHHGNGTQDIWWNDPSVLTISLHQ--HLCFPPDSGYSTER--GAGNGHGYNINVPL-PP 240
Query: 487 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWL-- 544
G + Y+ A QV+LP + P+L++V +G+DA + DPL V+ + +
Sbjct: 241 GSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTID 300
Query: 545 --KALAQGRIILALEGGYN 561
+ GRI+ EGGY+
Sbjct: 301 CAADICDGRIVFVQEGGYS 319
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 89/156 (57%), Gaps = 12/156 (7%)
Query: 136 LSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSV 195
L A LS G V + V GE + G A++ PPGHHA + GFCIFNN SV
Sbjct: 114 LEIARLSAGGAV-------ELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSV 166
Query: 196 AAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPH 255
AA YA G+ RV ILDWDVHHGNGTQ +++NDP VL IS+H+ H F P S +
Sbjct: 167 AAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQ--HLCFPPDSGYSTER 224
Query: 256 NVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILP 291
G G G G+N+NV G + Y+ A QV+LP
Sbjct: 225 --GAGNGHGYNINVPL-PPGSGNAAYLHAMDQVVLP 257
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 293 YALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVG 352
YA G+ RV ILDWDVHHGNGTQ +++NDP VL IS+H+ H F P S + G
Sbjct: 170 YARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQ--HLCFPPDSGYSTER--G 225
Query: 353 EGKGEGFNVNV 363
G G G+N+NV
Sbjct: 226 AGNGHGYNINV 236
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|B Chain B, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|C Chain C, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|D Chain D, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
Length = 362
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 7/185 (3%)
Query: 382 AIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYND 441
A+ RPPGHHA D GFC NN ++AA+ H +RV +LD D+HHG G Q +FY
Sbjct: 170 ALCRPPGHHARVDAAGGFCYLNNAAIAAQALRARH--ARVAVLDTDMHHGQGIQEIFYAR 227
Query: 442 PRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVI 501
VLY+S+H D +F+P + G G+G G+NVN+ G S+ + +
Sbjct: 228 RDVLYVSIH-GDPTNFYP-AVAGFDDERGAGEGLGYNVNLPM-PHGSSEAAFFERVDDAL 284
Query: 502 LPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYN 561
+ +F P+ +++S G+D +DP V+ + + H + AL +I+ EGGY+
Sbjct: 285 REL-RRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQ-EGGYH 342
Query: 562 ISSIS 566
I S+
Sbjct: 343 IESLE 347
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 170 AIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYND 229
A+ RPPGHHA D GFC NN ++AA+ H +RV +LD D+HHG G Q +FY
Sbjct: 170 ALCRPPGHHARVDAAGGFCYLNNAAIAAQALRARH--ARVAVLDTDMHHGQGIQEIFYAR 227
Query: 230 PRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNV 269
VLY+S+H D +F+P + G G+G G+NVN+
Sbjct: 228 RDVLYVSIH-GDPTNFYP-AVAGFDDERGAGEGLGYNVNL 265
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 301 SRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFN 360
+RV +LD D+HHG G Q +FY VLY+S+H D +F+P + G G+G G+N
Sbjct: 205 ARVAVLDTDMHHGQGIQEIFYARRDVLYVSIH-GDPTNFYP-AVAGFDDERGAGEGLGYN 262
Query: 361 VNV 363
VN+
Sbjct: 263 VNL 265
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant
Length = 388
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 448
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 449 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQF 508
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ + F
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 509 NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYA 568
NP+ V++ G D DP+ ++P ++ +IL GGYN+++ +
Sbjct: 256 NPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILG-GGGYNLANTARC 314
Query: 569 MTLCTKALLGDPL 581
T T +LG L
Sbjct: 315 WTYLTGVILGKTL 327
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 236
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 237 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALD 296
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ +Y
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 297 N 297
N
Sbjct: 256 N 256
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 300 LSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGF 359
R+L +D D+HHG+G + F +V+ +S+H++ G FFP + D +VG GKG +
Sbjct: 169 FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVS--DVGLGKGRYY 225
Query: 360 NVNV 363
+VNV
Sbjct: 226 SVNV 229
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant
pdb|3EZP|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101n Variant
Length = 388
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 448
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 449 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQF 508
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ + F
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 509 NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYA 568
NP+ V++ G D DP+ ++P ++ +IL GGYN+++ +
Sbjct: 256 NPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILG-GGGYNLANTARC 314
Query: 569 MTLCTKALLGDPL 581
T T +LG L
Sbjct: 315 WTYLTGVILGKTL 327
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 236
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 237 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALD 296
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ +Y
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 297 N 297
N
Sbjct: 256 N 256
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 300 LSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGF 359
R+L +D D+HHG+G + F +V+ +S+H++ G FFP + D +VG GKG +
Sbjct: 169 FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVS--DVGLGKGRYY 225
Query: 360 NVNV 363
+VNV
Sbjct: 226 SVNV 229
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ4|B Chain B, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ6|A Chain A, Crystal Structure Of D101l Fe2+ Hdac8 Complexed With M344
pdb|3MZ7|A Chain A, Crystal Structure Of D101l Co2+ Hdac8 Complexed With M344
Length = 389
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 448
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 449 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQF 508
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ + F
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 509 NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYA 568
NP+ V++ G D DP+ ++P ++ +IL GGYN+++ +
Sbjct: 256 NPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILG-GGGYNLANTARC 314
Query: 569 MTLCTKALLGDPL 581
T T +LG L
Sbjct: 315 WTYLTGVILGKTL 327
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 236
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 237 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALD 296
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ +Y
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 297 N 297
N
Sbjct: 256 N 256
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 300 LSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGF 359
R+L +D D+HHG+G + F +V+ +S+H++ G FFP + D +VG GKG +
Sbjct: 169 FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVS--DVGLGKGRYY 225
Query: 360 NVNV 363
+VNV
Sbjct: 226 SVNV 229
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant
pdb|3EZT|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101e Variant
Length = 388
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 448
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 449 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQF 508
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ + F
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 509 NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYA 568
NP+ V++ G D DP+ ++P ++ +IL GGYN+++ +
Sbjct: 256 NPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILG-GGGYNLANTARC 314
Query: 569 MTLCTKALLGDPL 581
T T +LG L
Sbjct: 315 WTYLTGVILGKTL 327
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 236
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 237 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALD 296
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ +Y
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 297 N 297
N
Sbjct: 256 N 256
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 300 LSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGF 359
R+L +D D+HHG+G + F +V+ +S+H++ G FFP + D +VG GKG +
Sbjct: 169 FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVS--DVGLGKGRYY 225
Query: 360 NVNV 363
+VNV
Sbjct: 226 SVNV 229
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
pdb|3SFH|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
Length = 378
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 448
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 143 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 200
Query: 449 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQF 508
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ + F
Sbjct: 201 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 256
Query: 509 NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYA 568
NP+ V++ G D DP+ ++P ++ +IL GGYN+++ +
Sbjct: 257 NPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILG-GGGYNLANTARC 315
Query: 569 MTLCTKALLGDPL 581
T T +LG L
Sbjct: 316 WTYLTGVILGKTL 328
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 236
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 143 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 200
Query: 237 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALD 296
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ +Y
Sbjct: 201 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 256
Query: 297 N 297
N
Sbjct: 257 N 257
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 300 LSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGF 359
R+L +D D+HHG+G + F +V+ +S+H++ G FFP + D +VG GKG +
Sbjct: 170 FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVS--DVGLGKGRYY 226
Query: 360 NVNV 363
+VNV
Sbjct: 227 SVNV 230
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant.
pdb|3F06|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101a Variant
Length = 388
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 448
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 449 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQF 508
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ + F
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 509 NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYA 568
NP+ V++ G D DP+ ++P ++ +IL GGYN+++ +
Sbjct: 256 NPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILG-GGGYNLANTARC 314
Query: 569 MTLCTKALLGDPL 581
T T +LG L
Sbjct: 315 WTYLTGVILGKTL 327
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 236
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 237 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALD 296
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ +Y
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 297 N 297
N
Sbjct: 256 N 256
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 300 LSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGF 359
R+L +D D+HHG+G + F +V+ +S+H++ G FFP + D +VG GKG +
Sbjct: 169 FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVS--DVGLGKGRYY 225
Query: 360 NVNV 363
+VNV
Sbjct: 226 SVNV 229
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F0R|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
Length = 388
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 448
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 449 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQF 508
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ + F
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 509 NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYA 568
NP+ V++ G D DP+ ++P ++ +IL GGYN+++ +
Sbjct: 256 NPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILG-GGGYNLANTARC 314
Query: 569 MTLCTKALLGDPL 581
T T +LG L
Sbjct: 315 WTYLTGVILGKTL 327
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 236
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 237 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALD 296
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ +Y
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 297 N 297
N
Sbjct: 256 N 256
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 300 LSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGF 359
R+L +D D+HHG+G + F +V+ +S+H++ G FFP + D +VG GKG +
Sbjct: 169 FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVS--DVGLGKGRYY 225
Query: 360 NVNV 363
+VNV
Sbjct: 226 SVNV 229
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex
pdb|2V5X|B Chain B, Crystal Structure Of Hdac8-Inhibitor Complex
Length = 388
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 448
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 449 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQF 508
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ + F
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 509 NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYA 568
NP+ V++ G D DP+ ++P ++ +IL GGYN+++ +
Sbjct: 256 NPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILG-GGGYNLANTARC 314
Query: 569 MTLCTKALLGDPL 581
T T +LG L
Sbjct: 315 WTYLTGVILGKTL 327
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 236
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 237 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALD 296
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ +Y
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 297 N 297
N
Sbjct: 256 N 256
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 300 LSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGF 359
R+L +D D+HHG+G + F +V+ +S+H++ G FFP + D +VG GKG +
Sbjct: 169 FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVS--DVGLGKGRYY 225
Query: 360 NVNV 363
+VNV
Sbjct: 226 SVNV 229
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T64|B Chain B, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T67|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Ms-344
pdb|1T69|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Saha
pdb|1VKG|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1VKG|B Chain B, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1W22|A Chain A, Crystal Structure Of Inhibited Human Hdac8
pdb|1W22|B Chain B, Crystal Structure Of Inhibited Human Hdac8
Length = 377
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 448
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 449 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQF 508
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ + F
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 509 NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYA 568
NP+ V++ G D DP+ ++P ++ +IL GGYN+++ +
Sbjct: 256 NPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILG-GGGYNLANTARC 314
Query: 569 MTLCTKALLGDPL 581
T T +LG L
Sbjct: 315 WTYLTGVILGKTL 327
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 236
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 237 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALD 296
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ +Y
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 297 N 297
N
Sbjct: 256 N 256
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 300 LSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGF 359
R+L +D D+HHG+G + F +V+ +S+H++ G FFP + D +VG GKG +
Sbjct: 169 FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVS--DVGLGKGRYY 225
Query: 360 NVNV 363
+VNV
Sbjct: 226 SVNV 229
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3MZ3|B Chain B, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3RQD|A Chain A, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
pdb|3RQD|B Chain B, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
Length = 389
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 448
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 449 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQF 508
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ + F
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 509 NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYA 568
NP+ V++ G D DP+ ++P ++ +IL GGYN+++ +
Sbjct: 256 NPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILG-GGGYNLANTARC 314
Query: 569 MTLCTKALLGDPL 581
T T +LG L
Sbjct: 315 WTYLTGVILGKTL 327
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 236
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 237 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALD 296
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ +Y
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 297 N 297
N
Sbjct: 256 N 256
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 300 LSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGF 359
R+L +D D+HHG+G + F +V+ +S+H++ G FFP + D +VG GKG +
Sbjct: 169 FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVS--DVGLGKGRYY 225
Query: 360 NVNV 363
+VNV
Sbjct: 226 SVNV 229
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex
pdb|2V5W|B Chain B, Crystal Structure Of Hdac8-Substrate Complex
Length = 388
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 448
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 449 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQF 508
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ + F
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 509 NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYA 568
NP+ V++ G D DP+ ++P ++ +IL GG+N+++ +
Sbjct: 256 NPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILG-GGGFNLANTARC 314
Query: 569 MTLCTKALLGDPL 581
T T +LG L
Sbjct: 315 WTYLTGVILGKTL 327
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 236
HHA++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 237 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALD 296
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ +Y
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 297 N 297
N
Sbjct: 256 N 256
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 300 LSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGF 359
R+L +D D+HHG+G + F +V+ +S+H++ G FFP + D +VG GKG +
Sbjct: 169 FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVS--DVGLGKGRYY 225
Query: 360 NVNV 363
+VNV
Sbjct: 226 SVNV 229
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|B Chain B, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|C Chain C, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|D Chain D, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate
Length = 388
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 7/193 (3%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 448
H A++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HAAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 449 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQF 508
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ + F
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 509 NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYA 568
NP+ V++ G D DP+ ++P ++ +IL GGYN+++ +
Sbjct: 256 NPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILG-GGGYNLANTARC 314
Query: 569 MTLCTKALLGDPL 581
T T +LG L
Sbjct: 315 WTYLTGVILGKTL 327
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 236
H A++DE GFC N+ + R+L +D D+HHG+G + F +V+ +S
Sbjct: 142 HAAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVS 199
Query: 237 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALD 296
+H++ G FFP + D +VG GKG ++VNV + G+ D +Y + V+ +Y
Sbjct: 200 LHKFSPG-FFPGTGDVS--DVGLGKGRYYSVNVPI-QDGIQDEKYYQICESVLKEVYQAF 255
Query: 297 N 297
N
Sbjct: 256 N 256
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 300 LSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGF 359
R+L +D D+HHG+G + F +V+ +S+H++ G FFP + D +VG GKG +
Sbjct: 169 FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVS--DVGLGKGRYY 225
Query: 360 NVNV 363
+VNV
Sbjct: 226 SVNV 229
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|B Chain B, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|C Chain C, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|D Chain D, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|E Chain E, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|F Chain F, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|G Chain G, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|H Chain H, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|I Chain I, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|J Chain J, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|K Chain K, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|L Chain L, Crystal Structure Of Apah Complexed With M344
pdb|3Q9F|A Chain A, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|B Chain B, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|C Chain C, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|D Chain D, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|E Chain E, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|F Chain F, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|G Chain G, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|H Chain H, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|I Chain I, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|J Chain J, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|K Chain K, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|L Chain L, Crystal Structure Of Apah Complexed With Caps
Length = 341
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 92/197 (46%), Gaps = 6/197 (3%)
Query: 382 AIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYND 441
++ RPPGHHA D G+C NN +VAA+ LD G ++ ILD D HHGNGTQ +FY
Sbjct: 151 SLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDK-GAKKIAILDVDFHHGNGTQDIFYER 209
Query: 442 PRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVI 501
V + S+H D FPH G+G G G N +G + A +
Sbjct: 210 GDVFFASLHG-DPAEAFPHFLGYA-EETGKGAGAGTTANYPMG-RGTPYSVWGEALTDSL 266
Query: 502 LPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYN 561
IA F E ++VS G D DP+ K++ Y + A +++ +EGGY
Sbjct: 267 KRIA-AFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGV-PLLVVMEGGYG 324
Query: 562 ISSISYAMTLCTKALLG 578
+ I + K + G
Sbjct: 325 VPEIGLNVANVLKGVAG 341
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 170 AIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYND 229
++ RPPGHHA D G+C NN +VAA+ LD G ++ ILD D HHGNGTQ +FY
Sbjct: 151 SLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDK-GAKKIAILDVDFHHGNGTQDIFYER 209
Query: 230 PRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVN 268
V + S+H D FPH G+G G G N
Sbjct: 210 GDVFFASLHG-DPAEAFPHFLGYA-EETGKGAGAGTTAN 246
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 295 LDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEG 354
L + G ++ ILD D HHGNGTQ +FY V + S+H D FPH G+G
Sbjct: 181 LLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHG-DPAEAFPHFLGYA-EETGKG 238
Query: 355 KGEGFNVN---------VAWNKVVDSVLNGESAHGV-AIIRPPGHHAEQDEPCGF 399
G G N W + + L +A G AI+ G + +P F
Sbjct: 239 AGAGTTANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISF 293
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|B Chain B, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|C Chain C, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
Length = 367
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 7/159 (4%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 448
HHA++ E GFC N++ +A L H RVL +D D+HHG+G + FY RV+ +S
Sbjct: 134 HHAKKSEASGFCYVNDIVLAILELLKYH--QRVLYIDIDIHHGDGVEEAFYTTDRVMTVS 191
Query: 449 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQF 508
H+Y G +FP + D ++G GKG+ + VN + G+ D Y F+ +I + +
Sbjct: 192 FHKY--GEYFPGTGDL--RDIGAGKGKYYAVNFPM-RDGIDDESYGQIFKPIISKVMEMY 246
Query: 509 NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKAL 547
P V++ G D+ D LG ++ + +A +K
Sbjct: 247 QPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTF 285
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 236
HHA++ E GFC N++ +A L H RVL +D D+HHG+G + FY RV+ +S
Sbjct: 134 HHAKKSEASGFCYVNDIVLAILELLKYH--QRVLYIDIDIHHGDGVEEAFYTTDRVMTVS 191
Query: 237 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVI 289
H+Y G +FP + D ++G GKG+ + VN + G+ D Y F+ +I
Sbjct: 192 FHKY--GEYFPGTGDL--RDIGAGKGKYYAVNFPM-RDGIDDESYGQIFKPII 239
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 301 SRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFN 360
RVL +D D+HHG+G + FY RV+ +S H+Y G +FP + D ++G GKG+ +
Sbjct: 162 QRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKY--GEYFPGTGDL--RDIGAGKGKYYA 217
Query: 361 VNVAWNKVVDSVLNGE 376
VN +D G+
Sbjct: 218 VNFPMRDGIDDESYGQ 233
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3R|B Chain B, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3S|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Saha
Length = 375
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 19/204 (9%)
Query: 349 HNVGEGKGEGFNVNVAWNKVVDSVLNGESA-------------HGVAIIRPPG--HHAEQ 393
+V +G E +N+ N V ++ G S G P G HHA +
Sbjct: 76 QSVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFK 135
Query: 394 DEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYD 453
GFC NN +V +Y L G R+L +D D HH +G Q FY+ +V +S+H+
Sbjct: 136 SRANGFCYINNPAVGIEY-LRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSP 194
Query: 454 HGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELV 513
+ FP K +GEGKG+G+N+N+ KG++D E++ A ++ + + F PE+
Sbjct: 195 EYA-FPFEK-GFLEEIGEGKGKGYNLNIPL-PKGLNDNEFLFALEKSLEIVKEVFEPEVY 251
Query: 514 LVSAGYDACVNDPLGGCKVSPEAY 537
L+ G D + D L +S A+
Sbjct: 252 LLQLGTDPLLEDYLSKFNLSNVAF 275
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 164 ESAHGVAIIRPPG--HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNG 221
E G P G HHA + GFC NN +V +Y L G R+L +D D HH +G
Sbjct: 116 EFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEY-LRKKGFKRILYIDLDAHHCDG 174
Query: 222 TQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEY 281
Q FY+ +V +S+H+ + FP K +GEGKG+G+N+N+ KG++D E+
Sbjct: 175 VQEAFYDTDQVFVLSLHQSPEYA-FPFEK-GFLEEIGEGKGKGYNLNIPL-PKGLNDNEF 231
Query: 282 IAAFQQVI 289
+ A ++ +
Sbjct: 232 LFALEKSL 239
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 295 LDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEG 354
L G R+L +D D HH +G Q FY+ +V +S+H+ + FP K +GEG
Sbjct: 154 LRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYA-FPFEK-GFLEEIGEG 211
Query: 355 KGEGFNVNVAWNK 367
KG+G+N+N+ K
Sbjct: 212 KGKGYNLNIPLPK 224
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus
Length = 375
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 19/202 (9%)
Query: 351 VGEGKGEGFNVNVAWNKVVDSVLNGESA-------------HGVAIIRPPG--HHAEQDE 395
V +G E +N+ N V ++ G S G P G HHA +
Sbjct: 78 VPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSR 137
Query: 396 PCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHG 455
GFC NN +V +Y L G R+L +D D HH +G Q FY+ +V +S+H+
Sbjct: 138 ANGFCYINNPAVGIEY-LRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEY 196
Query: 456 SFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLV 515
+ FP K +GEGKG+G+N+N+ KG++D E++ A ++ + + F PE+ L+
Sbjct: 197 A-FPFEK-GFLEEIGEGKGKGYNLNIPL-PKGLNDNEFLFALEKSLEIVKEVFEPEVYLL 253
Query: 516 SAGYDACVNDPLGGCKVSPEAY 537
G D + D L +S A+
Sbjct: 254 QLGTDPLLEDYLSKFNLSNVAF 275
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 164 ESAHGVAIIRPPG--HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNG 221
E G P G HHA + GFC NN +V +Y L G R+L +D D HH +G
Sbjct: 116 EFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEY-LRKKGFKRILYIDLDAHHCDG 174
Query: 222 TQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEY 281
Q FY+ +V +S+H+ + FP K +GEGKG+G+N+N+ KG++D E+
Sbjct: 175 VQEAFYDTDQVFVLSLHQSPEYA-FPFEK-GFLEEIGEGKGKGYNLNIPL-PKGLNDNEF 231
Query: 282 IAAFQQVI 289
+ A ++ +
Sbjct: 232 LFALEKSL 239
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 295 LDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEG 354
L G R+L +D D HH +G Q FY+ +V +S+H+ + FP K +GEG
Sbjct: 154 LRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYA-FPFEK-GFLEEIGEG 211
Query: 355 KGEGFNVNVAWNK 367
KG+G+N+N+ K
Sbjct: 212 KGKGYNLNIPLPK 224
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|B Chain B, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 376
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 11/201 (5%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 448
HHA++ E GFC N++ + L H RVL +D D+HHG+G Q FY RV+ +S
Sbjct: 134 HHAKKFEASGFCYVNDIVIGILELLKYH--PRVLYIDIDIHHGDGVQEAFYLTDRVMTVS 191
Query: 449 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQF 508
H+Y + FFP + D + VG G + +NV + G+ D Y FQ VI + +
Sbjct: 192 FHKYGN-YFFPGTGDM--YEVGAESGRYYCLNVPL-RDGIDDQSYKHLFQPVINQVVDFY 247
Query: 509 NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSI--- 565
P +++ G D+ D LG +S + ++K+ ++L GGY + ++
Sbjct: 248 QPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLG-GGGYTVRNVARC 306
Query: 566 -SYAMTLCTKALLGDPLPLLE 585
+Y +L + + + LP E
Sbjct: 307 WTYETSLLVEEAISEELPYSE 327
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYIS 236
HHA++ E GFC N++ + L H RVL +D D+HHG+G Q FY RV+ +S
Sbjct: 134 HHAKKFEASGFCYVNDIVIGILELLKYH--PRVLYIDIDIHHGDGVQEAFYLTDRVMTVS 191
Query: 237 VHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVI 289
H+Y + FFP + D + VG G + +NV + G+ D Y FQ VI
Sbjct: 192 FHKYGN-YFFPGTGDM--YEVGAESGRYYCLNVPL-RDGIDDQSYKHLFQPVI 240
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 302 RVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNV 361
RVL +D D+HHG+G Q FY RV+ +S H+Y + FFP + D + VG G + +
Sbjct: 163 RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGN-YFFPGTGDM--YEVGAESGRYYCL 219
Query: 362 NVAWNKVVD 370
NV +D
Sbjct: 220 NVPLRDGID 228
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|B Chain B, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|C Chain C, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|D Chain D, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|E Chain E, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|F Chain F, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|G Chain G, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|H Chain H, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|I Chain I, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|J Chain J, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|K Chain K, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|L Chain L, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9E|A Chain A, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|B Chain B, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|C Chain C, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|D Chain D, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|E Chain E, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|F Chain F, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|G Chain G, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|H Chain H, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|I Chain I, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|J Chain J, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|K Chain K, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|L Chain L, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
Length = 341
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 91/197 (46%), Gaps = 6/197 (3%)
Query: 382 AIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYND 441
++ RPPGH A D G+C NN +VAA+ LD G ++ ILD D HHGNGTQ +FY
Sbjct: 151 SLCRPPGHAAGIDMFGGYCFINNAAVAAQRLLDK-GAKKIAILDVDFHHGNGTQDIFYER 209
Query: 442 PRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVI 501
V + S+H D FPH G+G G G N +G + A +
Sbjct: 210 GDVFFASLHG-DPAEAFPHFLGYA-EETGKGAGAGTTANYPMG-RGTPYSVWGEALTDSL 266
Query: 502 LPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYN 561
IA F E ++VS G D DP+ K++ Y + A +++ +EGGY
Sbjct: 267 KRIA-AFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGV-PLLVVMEGGYG 324
Query: 562 ISSISYAMTLCTKALLG 578
+ I + K + G
Sbjct: 325 VPEIGLNVANVLKGVAG 341
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 170 AIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYND 229
++ RPPGH A D G+C NN +VAA+ LD G ++ ILD D HHGNGTQ +FY
Sbjct: 151 SLCRPPGHAAGIDMFGGYCFINNAAVAAQRLLDK-GAKKIAILDVDFHHGNGTQDIFYER 209
Query: 230 PRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVN 268
V + S+H D FPH G+G G G N
Sbjct: 210 GDVFFASLHG-DPAEAFPHFLGYA-EETGKGAGAGTTAN 246
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 295 LDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEG 354
L + G ++ ILD D HHGNGTQ +FY V + S+H D FPH G+G
Sbjct: 181 LLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHG-DPAEAFPHFLGYA-EETGKG 238
Query: 355 KGEGFNVN---------VAWNKVVDSVLNGESAHGV-AIIRPPGHHAEQDEPCGF 399
G G N W + + L +A G AI+ G + +P F
Sbjct: 239 AGAGTTANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISF 293
>pdb|3C5K|A Chain A, Crystal Structure Of Human Hdac6 Zinc Finger Domain
Length = 109
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 19 VRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVDNHLL 63
V CGRYI H + H ++ HPL LS+ DLS WCY C+AYV + L
Sbjct: 45 VYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQAL 89
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 39 PLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVNPMSII---ITEHPLALSFADLS 95
P+ + D++ C C +N + +Y Y+N + + HPL LS+ DLS
Sbjct: 15 PIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLS 74
Query: 96 VWCYVCEAYVDNHLL 110
WCY C+AYV + L
Sbjct: 75 AWCYYCQAYVHHQAL 89
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 132 HPLALSFADLSVWGYVCEPYVDNHVVDSVLN 162
HPL LS+ DLS W Y C+ YV + + V N
Sbjct: 64 HPLVLSYIDLSAWCYYCQAYVHHQALLDVKN 94
>pdb|3GV4|A Chain A, Crystal Structure Of Human Hdac6 Zinc Finger Domain And
Ubiquitin C-Terminal Peptide Rlrgg
pdb|3PHD|A Chain A, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|3PHD|B Chain B, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|3PHD|C Chain C, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|3PHD|D Chain D, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
Length = 107
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 19 VRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVDNHLL 63
V CGRYI H + H ++ HPL LS+ DLS WCY C+AYV + L
Sbjct: 43 VYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQAL 87
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 39 PLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVNPMSII---ITEHPLALSFADLS 95
P+ + D++ C C +N + +Y Y+N + + HPL LS+ DLS
Sbjct: 13 PIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLS 72
Query: 96 VWCYVCEAYVDNHLL 110
WCY C+AYV + L
Sbjct: 73 AWCYYCQAYVHHQAL 87
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 132 HPLALSFADLSVWGYVCEPYVDNHVVDSVLN 162
HPL LS+ DLS W Y C+ YV + + V N
Sbjct: 62 HPLVLSYIDLSAWCYYCQAYVHHQALLDVKN 92
>pdb|2UZG|A Chain A, Zf-Ubp Domain Of Vdu1
Length = 97
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 17 SLVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVC--EAYVDNHL 62
S V CG +HS +H T+H L ++ L VWCY C E ++D L
Sbjct: 47 SYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKL 94
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 83 TEHPLALSFADLSVWCYVC--EAYVDNHL 109
T+H L ++ L VWCY C E ++D L
Sbjct: 66 TKHYLTVNLTTLRVWCYACSKEVFLDRKL 94
>pdb|2I50|A Chain A, Solution Structure Of Ubp-M Znf-Ubp Domain
Length = 126
Score = 35.8 bits (81), Expect = 0.077, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 21 CGRYIEE-HSMLHGV---STEHPLALSFADLSVWCYVCEAYV 58
CGR +E H++ H + S H L LS + SVWCYVC+ V
Sbjct: 65 CGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEV 106
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 74 YVNPMSIIITEHPLALSFADLSVWCYVCEAYV 105
Y+ P S H L LS + SVWCYVC+ V
Sbjct: 78 YLTPRS---EPHCLVLSLDNWSVWCYVCDNEV 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,891,969
Number of Sequences: 62578
Number of extensions: 985626
Number of successful extensions: 2083
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1867
Number of HSP's gapped (non-prelim): 90
length of query: 632
length of database: 14,973,337
effective HSP length: 105
effective length of query: 527
effective length of database: 8,402,647
effective search space: 4428194969
effective search space used: 4428194969
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)