Query psy8282
Match_columns 632
No_of_seqs 511 out of 3142
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:30:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1343|consensus 100.0 2E-81 4.2E-86 715.1 29.0 534 61-614 53-796 (797)
2 COG0123 AcuC Deacetylases, inc 100.0 1.4E-64 3E-69 536.1 23.1 242 334-582 52-315 (340)
3 PF00850 Hist_deacetyl: Histon 100.0 4.8E-65 1E-69 535.1 18.8 219 355-577 79-311 (311)
4 PTZ00346 histone deacetylase; 100.0 5.9E-63 1.3E-67 532.4 26.6 272 333-613 73-398 (429)
5 PTZ00063 histone deacetylase; 100.0 5E-62 1.1E-66 527.8 25.8 287 332-628 52-388 (436)
6 KOG1342|consensus 100.0 4.7E-50 1E-54 418.3 22.0 254 366-628 116-388 (425)
7 PF00850 Hist_deacetyl: Histon 100.0 2.4E-49 5.3E-54 416.2 14.3 203 87-315 36-257 (311)
8 COG0123 AcuC Deacetylases, inc 100.0 7.6E-49 1.6E-53 416.1 18.1 222 64-314 26-255 (340)
9 PTZ00346 histone deacetylase; 100.0 5.8E-47 1.3E-51 408.5 18.2 226 60-315 44-285 (429)
10 PTZ00063 histone deacetylase; 100.0 3.5E-46 7.5E-51 404.5 18.2 226 63-316 27-268 (436)
11 KOG1342|consensus 100.0 1.6E-39 3.5E-44 339.6 15.5 189 84-295 52-250 (425)
12 KOG1343|consensus 100.0 5.7E-39 1.2E-43 367.3 10.0 252 366-618 140-394 (797)
13 KOG1344|consensus 100.0 5.7E-30 1.2E-34 253.6 7.9 196 366-576 116-317 (324)
14 KOG1344|consensus 99.8 7.3E-21 1.6E-25 189.2 5.5 210 53-295 29-246 (324)
15 PF02148 zf-UBP: Zn-finger in 99.1 2.4E-11 5.2E-16 99.8 1.3 45 17-61 18-62 (63)
16 KOG1873|consensus 98.4 1E-07 2.3E-12 108.2 3.2 61 15-75 98-163 (877)
17 KOG0804|consensus 98.4 2.4E-07 5.2E-12 100.5 3.5 51 6-59 239-289 (493)
18 COG5207 UBP14 Isopeptidase T [ 97.5 5.1E-05 1.1E-09 83.8 2.0 43 17-59 192-244 (749)
19 cd02669 Peptidase_C19M A subfa 97.4 0.00011 2.5E-09 81.6 3.4 50 18-67 36-85 (440)
20 KOG0944|consensus 97.3 0.00011 2.3E-09 83.7 2.7 49 16-64 197-256 (763)
21 smart00290 ZnF_UBP Ubiquitin C 97.0 0.0003 6.5E-09 54.7 1.6 33 16-48 17-49 (50)
22 cd01835 SGNH_hydrolase_like_3 74.7 18 0.00038 34.9 8.8 65 479-546 41-106 (193)
23 KOG0121|consensus 66.5 3.9 8.5E-05 38.9 2.1 49 388-436 69-122 (153)
24 cd01841 NnaC_like NnaC (CMP-Ne 60.5 39 0.00084 31.9 7.8 62 477-547 25-87 (174)
25 cd04502 SGNH_hydrolase_like_7 53.7 39 0.00085 31.9 6.6 61 478-547 25-86 (171)
26 PF14369 zf-RING_3: zinc-finge 52.6 5.2 0.00011 29.5 0.3 13 48-60 2-14 (35)
27 cd04501 SGNH_hydrolase_like_4 52.2 59 0.0013 30.9 7.6 41 477-523 33-74 (183)
28 TIGR03018 pepcterm_TyrKin exop 52.2 65 0.0014 32.0 8.1 52 495-562 134-185 (207)
29 PF14968 CCDC84: Coiled coil p 52.0 19 0.00041 39.4 4.5 83 24-107 17-130 (336)
30 TIGR02707 butyr_kinase butyrat 51.5 71 0.0015 35.1 8.9 165 395-581 147-348 (351)
31 cd01828 sialate_O-acetylestera 45.6 81 0.0018 29.6 7.3 38 478-522 24-62 (169)
32 cd01833 XynB_like SGNH_hydrola 45.3 57 0.0012 30.2 6.1 41 477-523 14-55 (157)
33 TIGR01969 minD_arch cell divis 45.1 24 0.00052 35.4 3.8 26 194-220 18-43 (251)
34 cd01836 FeeA_FeeB_like SGNH_hy 44.5 77 0.0017 30.3 7.1 39 478-523 43-82 (191)
35 PRK13236 nitrogenase reductase 44.1 24 0.00051 37.4 3.7 33 193-227 22-54 (296)
36 cd01822 Lysophospholipase_L1_l 43.3 87 0.0019 29.3 7.1 36 478-519 39-74 (177)
37 TIGR01969 minD_arch cell divis 43.1 25 0.00054 35.2 3.6 26 406-432 18-43 (251)
38 TIGR02855 spore_yabG sporulati 42.6 46 0.00099 35.5 5.4 48 499-547 143-194 (283)
39 KOG0121|consensus 42.5 20 0.00043 34.3 2.5 45 180-224 73-122 (153)
40 PRK13236 nitrogenase reductase 42.3 26 0.00056 37.1 3.7 34 405-440 22-55 (296)
41 PF13472 Lipase_GDSL_2: GDSL-l 41.9 21 0.00046 32.6 2.6 44 477-523 32-76 (179)
42 cd03012 TlpA_like_DipZ_like Tl 39.1 37 0.0008 30.7 3.7 37 37-80 23-59 (126)
43 cd01972 Nitrogenase_VnfE_like 38.2 1.4E+02 0.0029 33.4 8.7 73 495-577 75-148 (426)
44 PF05582 Peptidase_U57: YabG p 36.9 95 0.0021 33.3 6.7 27 499-526 144-170 (287)
45 cd01825 SGNH_hydrolase_peri1 S 35.1 1.5E+02 0.0033 27.9 7.5 20 502-521 49-69 (189)
46 PF02310 B12-binding: B12 bind 34.5 2E+02 0.0043 25.5 7.7 54 501-567 43-96 (121)
47 TIGR01287 nifH nitrogenase iro 33.3 55 0.0012 33.8 4.4 26 196-223 19-44 (275)
48 cd01832 SGNH_hydrolase_like_1 32.8 1.4E+02 0.0029 28.3 6.7 27 507-539 65-92 (185)
49 PRK10818 cell division inhibit 32.4 50 0.0011 33.9 3.8 27 194-221 20-46 (270)
50 cd01967 Nitrogenase_MoFe_alpha 32.2 1.9E+02 0.0041 31.7 8.6 72 495-576 73-145 (406)
51 TIGR01287 nifH nitrogenase iro 31.9 55 0.0012 33.8 4.1 29 406-436 17-45 (275)
52 cd04237 AAK_NAGS-ABP AAK_NAGS- 31.8 3E+02 0.0065 29.1 9.6 61 493-564 2-64 (280)
53 PRK10818 cell division inhibit 30.9 51 0.0011 33.8 3.7 29 406-435 20-48 (270)
54 PRK13230 nitrogenase reductase 29.6 55 0.0012 34.0 3.7 29 195-225 19-47 (279)
55 PRK13232 nifH nitrogenase redu 29.5 52 0.0011 34.0 3.4 25 199-225 23-47 (273)
56 PF00148 Oxidored_nitro: Nitro 29.5 1.7E+02 0.0036 32.0 7.5 73 495-578 60-137 (398)
57 COG3914 Spy Predicted O-linked 29.4 4.4E+02 0.0095 31.3 10.8 149 380-561 294-470 (620)
58 CHL00175 minD septum-site dete 29.2 60 0.0013 33.6 3.8 25 198-223 37-61 (281)
59 cd01820 PAF_acetylesterase_lik 28.9 75 0.0016 31.4 4.3 39 478-521 63-102 (214)
60 cd02036 MinD Bacterial cell di 28.8 67 0.0015 30.2 3.8 23 200-223 23-45 (179)
61 cd01966 Nitrogenase_NifN_1 Nit 27.6 2.4E+02 0.0053 31.5 8.5 72 495-577 67-143 (417)
62 CHL00175 minD septum-site dete 27.5 65 0.0014 33.3 3.8 29 406-435 33-61 (281)
63 PRK14476 nitrogenase molybdenu 27.3 2.3E+02 0.005 32.1 8.3 72 495-577 78-154 (455)
64 PRK13232 nifH nitrogenase redu 27.1 59 0.0013 33.6 3.4 28 409-438 21-48 (273)
65 PHA02518 ParA-like protein; Pr 26.8 65 0.0014 31.3 3.4 27 195-223 19-45 (211)
66 TIGR01285 nifN nitrogenase mol 26.4 2.9E+02 0.0063 31.1 8.9 71 495-576 77-152 (432)
67 TIGR01283 nifE nitrogenase mol 26.0 3.3E+02 0.0071 30.7 9.2 67 496-573 108-175 (456)
68 cd01844 SGNH_hydrolase_like_6 25.5 1.5E+02 0.0033 28.2 5.7 47 503-555 51-99 (177)
69 PF05766 NinG: Bacteriophage L 25.5 49 0.0011 33.5 2.2 93 15-111 87-185 (189)
70 cd02036 MinD Bacterial cell di 25.3 81 0.0017 29.6 3.7 24 411-435 22-45 (179)
71 cd02040 NifH NifH gene encodes 24.9 76 0.0016 32.3 3.6 21 203-225 27-47 (270)
72 cd00840 MPP_Mre11_N Mre11 nucl 24.7 3.5E+02 0.0077 26.2 8.2 64 490-562 23-88 (223)
73 PHA02518 ParA-like protein; Pr 24.6 81 0.0017 30.6 3.6 28 406-435 18-45 (211)
74 PRK13230 nitrogenase reductase 23.9 81 0.0018 32.7 3.7 30 406-437 18-47 (279)
75 TIGR01281 DPOR_bchL light-inde 23.9 82 0.0018 32.3 3.7 16 207-223 29-44 (268)
76 cd02040 NifH NifH gene encodes 23.2 1E+02 0.0022 31.4 4.2 24 412-437 24-47 (270)
77 TIGR01279 DPOR_bchN light-inde 22.7 3.2E+02 0.0068 30.5 8.2 73 495-578 70-143 (407)
78 TIGR01968 minD_bact septum sit 21.8 1E+02 0.0022 31.0 3.8 14 207-220 31-44 (261)
79 PRK13185 chlL protochlorophyll 21.8 90 0.002 32.0 3.5 20 203-224 28-47 (270)
80 cd01968 Nitrogenase_NifE_I Nit 21.4 4.5E+02 0.0097 29.1 9.1 72 496-578 73-149 (410)
81 COG1618 Predicted nucleotide k 21.3 2.7E+02 0.0059 27.9 6.4 50 497-556 86-137 (179)
82 cd01974 Nitrogenase_MoFe_beta 21.2 4.5E+02 0.0097 29.5 9.0 72 495-577 71-147 (435)
83 cd00316 Oxidoreductase_nitroge 21.1 4.9E+02 0.011 28.2 9.2 70 497-577 68-138 (399)
84 cd02117 NifH_like This family 20.7 1.3E+02 0.0029 29.8 4.3 22 203-226 26-47 (212)
85 cd01965 Nitrogenase_MoFe_beta_ 20.6 4.9E+02 0.011 29.0 9.2 71 496-577 68-143 (428)
86 TIGR03371 cellulose_yhjQ cellu 20.5 1E+02 0.0022 30.8 3.5 19 197-216 22-40 (246)
87 cd03110 Fer4_NifH_child This p 20.4 68 0.0015 30.7 2.1 15 419-433 25-39 (179)
88 cd03466 Nitrogenase_NifN_2 Nit 20.1 3.6E+02 0.0079 30.2 8.0 72 495-577 70-145 (429)
No 1
>KOG1343|consensus
Probab=100.00 E-value=2e-81 Score=715.08 Aligned_cols=534 Identities=40% Similarity=0.650 Sum_probs=431.3
Q ss_pred hHHHHHHHhhhhhhcCCcceeee--cCCcccChhhHHHHHhhhhcc---------cCHHH-HHHHhhccCceeeCCCccc
Q psy8282 61 HLLALLIYLYGVMYVNPMSIIIT--EHPLALSFADLSVWCYVCEAY---------VDNHL-LALLIYLYGVMYVKPMSII 128 (632)
Q Consensus 61 ~~l~qL~~Iy~~L~v~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~---------l~~~~-~~~~~~~~~~~y~~~~~~~ 128 (632)
+.++++.++.+.+...+...-+. ..+++++.++++.+ |..++ +..++ ++.....++++|.++
T Consensus 53 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v--~~ke~~~~~~~t~~~~~e~~l~~~~~~~~~~~~~~---- 126 (797)
T KOG1343|consen 53 EKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASV--HVKEKLQEFLLSKKMTAEEGLNHSSSRYPSLYYTS---- 126 (797)
T ss_pred hhhhHHHHHHHHhhccCCccccccccchhhcccchhccc--ccHHHHHHHHhhhhhcchhhhhcccCCCCcceecC----
Confidence 45666777777776666653332 23466666655544 33322 33333 555566789999999
Q ss_pred cCHHHHHHHhcCccccccccCcchhHHHHHHHHcCCCcceeeecCCCCCCCCCCCCCcccccchHHHHHHHHHHhCCCCe
Q psy8282 129 ITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSR 208 (632)
Q Consensus 129 ~~~~~~a~~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rppGHHA~~~~~~GFC~~NnvAIAa~~l~~~~g~~r 208 (632)
.++..|.++.|+. ++..+.+..|+..++++.+||||||++++...|||+|||||++++.+..++..+|
T Consensus 127 -~s~~~a~~a~~~~-----------~~~~~~~~~~~~~n~~a~v~p~~hhsep~~~~~~cl~n~Va~~~~~~~~~~~~rr 194 (797)
T KOG1343|consen 127 -ASHSSADQASGSL-----------SGSYKAVLAGKASNGKADFRPPGHHSEPNLKVGFCLFNNVAERRSSPLLRRKKRR 194 (797)
T ss_pred -CchhhhcccCccc-----------ccccccccCCcccCccCcCCCCCCccccchhcchhHHHHHHHHhhccccccccce
Confidence 8899999999999 8888899999889999999999999999999999999999999999988877899
Q ss_pred EEEEeccccCCcceeecccC--CCCEEEEeeccCCCCCCCCCCCCCCCCCcCCCCCccceeeccCCCCCCCcHHHHHHHH
Q psy8282 209 VLILDWDVHHGNGTQAMFYN--DPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQ 286 (632)
Q Consensus 209 V~IvD~DvHHGnGTq~iF~~--dp~Vl~iSiH~~~~g~fyPg~~~~~~~~~G~g~g~g~~vNipl~~~g~~D~~Yl~~~~ 286 (632)
|+|+|||+|||+|||..|++ |++|+++|+|++++|.|||+...+.+..+|.|.|.|+++|+|++..|++|.+|.++|.
T Consensus 195 i~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~~~~dy~~~~~ 274 (797)
T KOG1343|consen 195 ILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGMTDADYEAAFL 274 (797)
T ss_pred eEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCCcchhhhhhhh
Confidence 99999999999999999999 9999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHhh------------ccc------c------------------c--ccc-hhcc--------------------
Q psy8282 287 QVILPMYAL------------DNH------G------------------L--SRV-LILD-------------------- 307 (632)
Q Consensus 287 ~~l~p~~~~------------D~~------~------------------l--g~~-l~~~-------------------- 307 (632)
.+++|...+ |.. . + |++ +.++
T Consensus 275 ~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~~~~~~~~llg 354 (797)
T KOG1343|consen 275 HVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQSQLVLNKLLG 354 (797)
T ss_pred ccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhccccccccCccceecchhHHHHHHHHhhhhHHhhcC
Confidence 999999888 211 0 1 122 1111
Q ss_pred ------------------------------cccccCCCCccc-----------------------ccC------------
Q psy8282 308 ------------------------------WDVHHGNGTQAM-----------------------FYN------------ 322 (632)
Q Consensus 308 ------------------------------w~~~~~~~~~~~-----------------------~~~------------ 322 (632)
|....+.+...- +++
T Consensus 355 ~~~~~~~~~~~p~~~~~e~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (797)
T KOG1343|consen 355 KPIEQLRQPGSPKEEAEEELQSVQAVQEDRWPCEGGSTSADSSALVQDQLEQVGLVKEEDEPVRSDEDGEIGEDELPAAG 434 (797)
T ss_pred CCccccccCCCchHHHHHHhhhhHHHhhcccccccCCcchhhhhhhhhhhhhhhhhhhccccccCCCCCccccccccchh
Confidence 433322211000 000
Q ss_pred -CCcc--------------------e-----eccccc----------------cCCCCC-CCCCCCC--C---Cccc---
Q psy8282 323 -DPRV--------------------L-----YISVHR----------------YDHGSF-FPHSKDA--G---PHNV--- 351 (632)
Q Consensus 323 -~~~~--------------------~-----~~~~~~----------------~~~~~l-~vHt~~Y--~---~~~~--- 351 (632)
..++ . +.++.| .+.++| .||+..| . ...+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~t~~~~gl~~~c~r~at~~el~~vHs~~~~~~~~~~~~~~~~ 514 (797)
T KOG1343|consen 435 MQAPFLKQQAEHALSADQAELELAGLDRSRSPESPARFTTGLHTGLLGKCERIATLEELQLVHSEAHVLLYGSRKLLGDL 514 (797)
T ss_pred cccchhhhhhhhcccccccccccccccccCCcccchhhhcccccccccccccccchhhhhhcccchhhcccchhhhcccc
Confidence 0000 0 000001 011122 7888888 1 0100
Q ss_pred ------cCCCCCccccHHHH----------HHHHHHH--HcCCCcceeEeeCCCCCCCCCCCCCCccccchHHHHHHHHH
Q psy8282 352 ------GEGKGEGFNVNVAW----------NKVVDSV--LNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYAL 413 (632)
Q Consensus 352 ------~~~~g~~~~s~~s~----------~~av~~v--~~g~~~~afalvRPpGHHA~~~~a~GFC~fNnvAIAa~~~~ 413 (632)
+...+..+.+.+|+ ..+++.+ +.+++.++||++|||||||.+..++|||+|||+|||+++++
T Consensus 515 ~~~~~~~~~~~~i~~~~dt~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppGHha~~~~a~gfc~fn~vaiaak~l~ 594 (797)
T KOG1343|consen 515 SLKFESRLPCGGIGVDSDTWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPGHHAEASTAMGFCFFNSVAIAAKLLQ 594 (797)
T ss_pred cchhhhhccccceeecccHHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCccccccCCcceeeeecchhhhhHHhh
Confidence 00011112222333 5556666 34555668999999999999999999999999999999999
Q ss_pred HhcCCCeeEEeeeccccCccchhccccCCCeEEEeeccCCCCCCCCCCCCCCCCCcCCCCCCccEEEecCCCCCCChHHH
Q psy8282 414 DNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEY 493 (632)
Q Consensus 414 ~~~g~~RVlIiD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~~yPgt~~g~~~~~G~g~g~g~~vNvPl~~~g~~D~~Y 493 (632)
..+..+||+|+|||||||||||++|+.||+|+|+|+|++++|.|||++ |..+++|.+.|.|+++||||+.+-.+|.+|
T Consensus 595 ~~~~~~rilivdwDvhhgngtq~~f~~~~~vlyislhr~~~G~~fp~~--g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey 672 (797)
T KOG1343|consen 595 QRSKASRILIVDWDVHHGNGTQQAFYSDPSVLYISLHRHDDGNFFPGS--GAPDEVGKGEGVGFNVNVAWTGGLDPDAEY 672 (797)
T ss_pred hhhhhcceEEEeecccCCcceeeeeccCccccccccchhccCCcCCCC--CCchhcccccccceeecccccCCCCCCHHH
Confidence 887788999999999999999999999999999999999999999998 778999999999999999998777778999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHH
Q psy8282 494 IAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCT 573 (632)
Q Consensus 494 l~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~ 573 (632)
+.+|+.+++|+.++|.||+|++|+|||+..+||||+..+|.++|+.+|+.|+.+|+||++++|||||++.++.++...++
T Consensus 673 ~~a~~~vv~Pia~~F~pd~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~ 752 (797)
T KOG1343|consen 673 LAAFRTVVMPIAYEFNPDLVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACV 752 (797)
T ss_pred HHHHHHhhHHHHHHhCCCeEEEeccccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCC---CccccCChhHHHHHHHHHHHHhhccccccc
Q psy8282 574 KALLGDPLPLL---ESDLDINSSAVTSIKETISSHKAYWSSLKF 614 (632)
Q Consensus 574 ~~Llg~~~~~~---~~~~~~~~~~~~~i~~vi~~~~~~W~~~~~ 614 (632)
++|+|.+.|.+ ....+|+..+..+++++++.|++||+|++.
T Consensus 753 ~~llg~~~p~~~~~~~~~~~~~~a~~~l~~~~~~~~~~w~~~~~ 796 (797)
T KOG1343|consen 753 RALLGDSLPPLSEAYLPQKPNSNAVATLEKVIEVQSKYWSCLQG 796 (797)
T ss_pred HhccCCCCCCccccccCCCcchHHHHHHHHHHHhhhcccccccC
Confidence 99999888763 233577778999999999999999999875
No 2
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-64 Score=536.13 Aligned_cols=242 Identities=40% Similarity=0.730 Sum_probs=220.1
Q ss_pred cCCCC-CCCCCCCC--CCcccc------CCCCCccccHHHH----------HHHHHHHHcCCCcceeEeeCCCCCCCCCC
Q psy8282 334 YDHGS-FFPHSKDA--GPHNVG------EGKGEGFNVNVAW----------NKVVDSVLNGESAHGVAIIRPPGHHAEQD 394 (632)
Q Consensus 334 ~~~~~-l~vHt~~Y--~~~~~~------~~~g~~~~s~~s~----------~~av~~v~~g~~~~afalvRPpGHHA~~~ 394 (632)
.++++ ++||+++| .+++.+ ...++++.+++|+ ++|++.+++|+ +++||++|||||||+++
T Consensus 52 ~~~~~l~~vH~~~yv~~l~~~~~~~~~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~-~~~~~~~rppgHHA~~~ 130 (340)
T COG0123 52 ATLEELLLVHSPDYVEFLESLSEEEGYGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGE-DNAFALVRPPGHHAGRD 130 (340)
T ss_pred CCHHHHHhhCCHHHHHHHHHhccccccccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCc-cceEEECCCCcccccCC
Confidence 44445 49999999 222221 2346677777665 89999999999 89999999999999999
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCeeEEeeeccccCccchhccccCCCeEEEeeccCCCCCCCCCCCCCCCCCcCCCCC
Q psy8282 395 EPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKG 474 (632)
Q Consensus 395 ~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~~yPgt~~g~~~~~G~g~g 474 (632)
+++|||+|||+||||++++++ +.+||+|||||+|||||||+|||+||+|+++|+|+++. .+||+|+. .+++|+++
T Consensus 131 ~a~GFC~fNn~Aiaa~~l~~~-~~~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~-~~yPgtg~--~~e~g~g~- 205 (340)
T COG0123 131 RASGFCLFNNVAIAAKYLLKK-GVKRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGR-PFYPGTGG--ADEIGEGK- 205 (340)
T ss_pred CCceeeeecHHHHHHHHHHHc-CCCcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCC-CCCCcCCC--ccccccCc-
Confidence 999999999999999999988 89999999999999999999999999999999999865 59999954 88999998
Q ss_pred CccEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHHHHHhcC---Cc
Q psy8282 475 EGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQ---GR 551 (632)
Q Consensus 475 ~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~l~~~a~---gr 551 (632)
+|+++||||| +|++|++|+.+|+.+++|++++|+||+||||||||+|.+||||.|+||+++|.++++.+++++. +|
T Consensus 206 ~g~~vNiPLp-~g~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~ 284 (340)
T COG0123 206 EGNNVNIPLP-PGTGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGP 284 (340)
T ss_pred ccceEeeecC-CCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999997 9999999999999999999999999999999999999999999999999999999999999885 59
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHcCCCCC
Q psy8282 552 IILALEGGYNISSISYAMTLCTKALLGDPLP 582 (632)
Q Consensus 552 vv~vLEGGY~~~~la~~~~~~~~~Llg~~~~ 582 (632)
+++||||||+.++++++|.+++..|.|.+..
T Consensus 285 ~~~vleGGY~~~~l~~~~~~~~~~l~~~~~~ 315 (340)
T COG0123 285 VVAVLEGGYNLDALARSLVAFLAGLAGLVEE 315 (340)
T ss_pred eEEEecCCCChHHHHHHHHHHHHHHcCCCcc
Confidence 9999999999999999999999999996543
No 3
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=4.8e-65 Score=535.06 Aligned_cols=219 Identities=48% Similarity=0.911 Sum_probs=186.9
Q ss_pred CCCccccHHHH----------HHHHHHHHcCCCcceeEeeCCCCCCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEe
Q psy8282 355 KGEGFNVNVAW----------NKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLIL 424 (632)
Q Consensus 355 ~g~~~~s~~s~----------~~av~~v~~g~~~~afalvRPpGHHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIi 424 (632)
.++++.+.+++ ++|++++++|+.+++||++|||||||.+++++|||+||||||||++++++++.+||+||
T Consensus 79 ~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppgHHA~~~~a~GFC~~Nnvaiaa~~l~~~~~~~rV~ii 158 (311)
T PF00850_consen 79 DGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPGHHAERDRAMGFCYFNNVAIAAKYLRKKYGLKRVAII 158 (311)
T ss_dssp SSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS--TT-BTTBBBTTBSS-HHHHHHHHHHHTTTTSSEEEE
T ss_pred CCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccccccCcCcCcceeeeccHHHHHHHHhhccccceEEEE
Confidence 35666655443 99999999999999999999999999999999999999999999999998999999999
Q ss_pred eeccccCccchhccccCCCeEEEeeccCCCCCCCC-CCCCCCCCCcCCCCCCccEEEecCCCCCCChHHHHHHHHHHHHH
Q psy8282 425 DWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFP-HSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILP 503 (632)
Q Consensus 425 D~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~~yP-gt~~g~~~~~G~g~g~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p 503 (632)
|||+|||||||+||++||+|+|+|||+++ +.+|| +| |..+++|.++|+|+++||||| +|++|++|+.+|+++|.|
T Consensus 159 D~DvHhGnGtq~if~~d~~V~~~SiH~~~-~~~yP~~t--G~~~e~G~~~g~g~~~NipL~-~g~~d~~y~~~~~~~l~~ 234 (311)
T PF00850_consen 159 DFDVHHGNGTQEIFYDDPRVLYISIHQYP-GNFYPFGT--GFPDEIGEGKGKGYNLNIPLP-PGTGDDEYLEAFEEILLP 234 (311)
T ss_dssp E-SSS--HHHHHHTTT-SSEEEEEEEE-C-TTSTTTSS----TT--ESGGGTTSEEEEEE--TTEBHHHHHHHHHHHHHH
T ss_pred EeCCCCcccchhheeCCCCEEecCccccc-cccCCCcC--CCccccCCCcccceeEecccc-cccchHHHHHHHhhcccc
Confidence 99999999999999999999999999986 45999 77 678899999999999999997 899999999999999999
Q ss_pred HHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHHHHHhcC---CcEEEEeCCCCCcchHHHHHHHHHHHHc
Q psy8282 504 IAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQ---GRIILALEGGYNISSISYAMTLCTKALL 577 (632)
Q Consensus 504 ~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~l~~~a~---grvv~vLEGGY~~~~la~~~~~~~~~Ll 577 (632)
++++|+||+||||||||+|.+||+|+++||+++|.++++.|++++. .|++++|||||++++++++|..++++|.
T Consensus 235 ~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~~~~~~L~ 311 (311)
T PF00850_consen 235 ALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWAAVIAALA 311 (311)
T ss_dssp HHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHHHHHHHH-
T ss_pred chhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999884 4999999999999999999999999873
No 4
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=5.9e-63 Score=532.39 Aligned_cols=272 Identities=24% Similarity=0.368 Sum_probs=233.2
Q ss_pred ccCCCCC-CCCCCCC--CCcccc----------C---CCCCccccHHHH----------HHHHHHHHcCCCcceeEeeCC
Q psy8282 333 RYDHGSF-FPHSKDA--GPHNVG----------E---GKGEGFNVNVAW----------NKVVDSVLNGESAHGVAIIRP 386 (632)
Q Consensus 333 ~~~~~~l-~vHt~~Y--~~~~~~----------~---~~g~~~~s~~s~----------~~av~~v~~g~~~~afalvRP 386 (632)
..++++| +||+++| .+++.+ . ..+|++.+.++| +.|++.+++|+.+ +|++||
T Consensus 73 ~At~eeL~~vHs~~YI~~l~~~~~~~~~~~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~--~Ai~~p 150 (429)
T PTZ00346 73 LVKVEELMAYHTDTYLANLGLHSCRSWLWNAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVD--VAVHWG 150 (429)
T ss_pred CCCHHHHHHhCCHHHHHHHHHhcccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCC--EEEeCC
Confidence 3555665 9999999 332210 0 124566665554 8899999999865 778888
Q ss_pred CC-CCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEeeeccccCccchhccccCCCeEEEeeccCCCCCCCCCCCCCC
Q psy8282 387 PG-HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAG 465 (632)
Q Consensus 387 pG-HHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~~yPgt~~g~ 465 (632)
|| |||++++++|||+|||+||||+++++++ +||||||||||||||||+||++||+|+|+|+|+++. .|||+| |.
T Consensus 151 GG~HHA~~~~a~GFC~fNdvAIAa~~ll~~~--~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~-~fyPgt--G~ 225 (429)
T PTZ00346 151 GGMHHSKCGECSGFCYVNDIVLGILELLKCH--DRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGE-SFFPGT--GH 225 (429)
T ss_pred CCcCcCCCCCCCcchHHhHHHHHHHHHHHcC--CeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCC-CCCCCC--CC
Confidence 88 9999999999999999999999999874 799999999999999999999999999999999875 499999 66
Q ss_pred CCCcCCCCCCccEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHHHH
Q psy8282 466 PHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLK 545 (632)
Q Consensus 466 ~~~~G~g~g~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~l~ 545 (632)
..++|.++|+|+++||||| +|++|++|+.+|+++|.|++++|+||+||||||||+|.+||||+|+||.++|.++++.++
T Consensus 226 ~~e~G~g~G~g~~vNVPL~-~G~~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~ 304 (429)
T PTZ00346 226 PRDVGYGRGRYYSMNLAVW-DGITDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVR 304 (429)
T ss_pred ccccCCCCCceeEEeeeCC-CCcCHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHH
Confidence 8899999999999999997 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEeCCCCCcchHHHHHHHHHHHHcCCCCCCC---C---c-----------------c----ccCChhHHHHH
Q psy8282 546 ALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLL---E---S-----------------D----LDINSSAVTSI 598 (632)
Q Consensus 546 ~~a~grvv~vLEGGY~~~~la~~~~~~~~~Llg~~~~~~---~---~-----------------~----~~~~~~~~~~i 598 (632)
++ ++|++++|||||++.++++||+.+++.++|.++|+. + . . ..+.....+.+
T Consensus 305 ~~-~~plv~vleGGY~~~~lar~w~~~t~~l~g~~i~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (429)
T PTZ00346 305 DL-GIPMLALGGGGYTIRNVAKLWAYETSILTGHPLPPNTVLPVAEMPLSGWLFQDSPLLIVAQDRSNHVLPGLHCQRAY 383 (429)
T ss_pred hc-CCCEEEEeCCcCCccHHHHHHHHHHHHHcCCCCCCCCCCCCCCCchhhhhcCCCccccccccccccCCCcchhHHHH
Confidence 87 579999999999999999999999999999876521 0 0 0 01234566778
Q ss_pred HHHHHHHhhcccccc
Q psy8282 599 KETISSHKAYWSSLK 613 (632)
Q Consensus 599 ~~vi~~~~~~W~~~~ 613 (632)
+.+++..++|-+.+.
T Consensus 384 ~~~~~~~~~~~~~~~ 398 (429)
T PTZ00346 384 QMMTEQIDRHVPHIQ 398 (429)
T ss_pred HHHHHHHHhhhhccC
Confidence 888888888877665
No 5
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=5e-62 Score=527.81 Aligned_cols=287 Identities=21% Similarity=0.373 Sum_probs=240.4
Q ss_pred cccCCCCC-CCCCCCC--CCcccc----C---------CC---CCccccHHHH----------HHHHHHHHcCCCcceeE
Q psy8282 332 HRYDHGSF-FPHSKDA--GPHNVG----E---------GK---GEGFNVNVAW----------NKVVDSVLNGESAHGVA 382 (632)
Q Consensus 332 ~~~~~~~l-~vHt~~Y--~~~~~~----~---------~~---g~~~~s~~s~----------~~av~~v~~g~~~~afa 382 (632)
++.++++| +||+++| .+++.. . .. .|+..+.++| +.|++++++|+. .||
T Consensus 52 ~~At~eeL~~vHs~~YI~~L~~~~~~~~~~~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~--~iA 129 (436)
T PTZ00063 52 HKSVEPELVLFHDEEYVDFLSSISPENYRDFTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQA--DIC 129 (436)
T ss_pred CCCCHHHHHHhCCHHHHHHHHHhChhhcccchhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCC--CEE
Confidence 33555666 8999999 222210 0 01 2555554443 889999999875 599
Q ss_pred eeCCCC-CCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEeeeccccCccchhccccCCCeEEEeeccCCCCCCCCCC
Q psy8282 383 IIRPPG-HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHS 461 (632)
Q Consensus 383 lvRPpG-HHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~~yPgt 461 (632)
++|||| |||.+++++|||+|||+||||++|++++ +||+|||||||||||||+||++||+|+|+|+|+++ .|||+|
T Consensus 130 in~~GG~HHA~~~~A~GFC~~NdiaiAi~~L~~~~--~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~--~ffPgt 205 (436)
T PTZ00063 130 VNWSGGLHHAKRSEASGFCYINDIVLGILELLKYH--ARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFG--DFFPGT 205 (436)
T ss_pred eeCCCCCCCCccCCCCceeeecHHHHHHHHHHHhC--CeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCC--CcCCCC
Confidence 999999 9999999999999999999999999875 79999999999999999999999999999999986 399999
Q ss_pred CCCCCCCcCCCCCCccEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHH
Q psy8282 462 KDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFT 541 (632)
Q Consensus 462 ~~g~~~~~G~g~g~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~ 541 (632)
|...++|.+.|+|+++||||| +|++|++|+.+|+++|.|++++|+||+||+|||||+|.+||||.++||.++|.+++
T Consensus 206 --G~~~e~G~g~G~g~~vNvPL~-~G~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~ 282 (436)
T PTZ00063 206 --GDVTDIGVAQGKYYSVNVPLN-DGIDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACV 282 (436)
T ss_pred --CCccccCCCCCCceEEEeeCC-CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHH
Confidence 667899999999999999997 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEeCCCCCcchHHHHHHHHHHHHcCCC------CCCC--------------CccccCChhHHHHHHHH
Q psy8282 542 HWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDP------LPLL--------------ESDLDINSSAVTSIKET 601 (632)
Q Consensus 542 ~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~~~Llg~~------~~~~--------------~~~~~~~~~~~~~i~~v 601 (632)
+.++++ ++|+++++||||++.++++||+..+..++|.+ +|.. .+....+....+.++++
T Consensus 283 ~~~~~~-~~pil~l~gGGY~~~~lar~w~~~t~~~~~~~~~~~~~iP~~~~~~~~~~~~~l~~~~~~~~n~n~~~~l~~~ 361 (436)
T PTZ00063 283 EFVRSL-NIPLLVLGGGGYTIRNVARCWAYETGVILNKHDEMSDQISLNDYYDYYAPDFQLHLQPSNIPNYNSPEHLEKI 361 (436)
T ss_pred HHHHhc-CCCEEEEeCccCCchHHHHHHHHHHHHHhCCcccCCccCCCCcchhhcCCCeEeecCcccccCCCCHHHHHHH
Confidence 999986 67999999999999999999999999999852 2210 01112334455666666
Q ss_pred HHHHhhccccccccccCCCCCCCcchh
Q psy8282 602 ISSHKAYWSSLKFLVALPENKLLSADY 628 (632)
Q Consensus 602 i~~~~~~W~~~~~~~~~~~~~~~~~~~ 628 (632)
++...+.-+.+....+++|++++|+-+
T Consensus 362 ~~~~~~~l~~~~~ap~v~~~~~~~~~~ 388 (436)
T PTZ00063 362 KVKILENLRYLEHAPGVQFAYVPPDFF 388 (436)
T ss_pred HHHHHHHHhcCCCCCeeccccCCcccc
Confidence 666666556677888889999988653
No 6
>KOG1342|consensus
Probab=100.00 E-value=4.7e-50 Score=418.32 Aligned_cols=254 Identities=28% Similarity=0.499 Sum_probs=225.3
Q ss_pred HHHHHHHHcCCCcceeEeeCCCC-CCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEeeeccccCccchhccccCCCe
Q psy8282 366 NKVVDSVLNGESAHGVAIIRPPG-HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRV 444 (632)
Q Consensus 366 ~~av~~v~~g~~~~afalvRPpG-HHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~dp~V 444 (632)
+.|+..+-.+++ -+|++|.+| |||.++.|+|||++|||++++..++|.+ +||++||+|+|||||+|++||..+||
T Consensus 116 l~aa~kLn~~~~--dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLlK~h--~RVLYIDIDvHHGDGVEeAFy~TDRV 191 (425)
T KOG1342|consen 116 LNAAQKLNRGEC--DIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKYH--KRVLYIDIDVHHGDGVEEAFYTTDRV 191 (425)
T ss_pred hHHHHHhCCCCc--eEEEecCcccccccccccCcceeehHHHHHHHHHHHhC--CceEEEEecccCCccHHHHHhcccee
Confidence 788888877765 588999999 9999999999999999999999999886 59999999999999999999999999
Q ss_pred EEEeeccCCCCCCCCCCCCCCCCCcCCCCCCccEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCC
Q psy8282 445 LYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN 524 (632)
Q Consensus 445 l~iSiH~~~~g~~yPgt~~g~~~~~G~g~g~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~ 524 (632)
+|+|+|.+.++ ||||| |+..++|.++|+.|.|||||. .|++|+.|..+|+.+|.++++.|+|++||+|||.|+..+
T Consensus 192 mTvSfHKyg~~-fFPGT--G~l~d~G~~kGkyyavNVPL~-dGidD~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~g 267 (425)
T KOG1342|consen 192 MTVSFHKYGPG-FFPGT--GDLSDIGAGKGKYYAVNVPLK-DGIDDESYESIFKPIISKVMERFQPEAIVLQCGADSLAG 267 (425)
T ss_pred EEEEEEeccCC-CCCCC--CcceeccCCCCceEEEccchh-ccCCcHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccC
Confidence 99999999865 99999 668899999999999999995 999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHHHHHcCCCCCCC----C--------------c
Q psy8282 525 DPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLL----E--------------S 586 (632)
Q Consensus 525 Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~~~Llg~~~~~~----~--------------~ 586 (632)
|+||.++||..|.+++.+.++++ +.|++++.+|||++.+++|||+..+..+++..++.. + +
T Consensus 268 DRlgcFnLsi~Gh~~Cv~fvksf-n~pllvlGGGGYT~rNVARcWtYeT~v~~~~~~~~elP~n~y~~yF~PDy~l~~~~ 346 (425)
T KOG1342|consen 268 DRLGCFNLSIKGHAECVKFVKSF-NLPLLVLGGGGYTLRNVARCWTYETGVLLDQELPNELPYNDYFEYFGPDYKLHIDP 346 (425)
T ss_pred CccceeeecchhHHHHHHHHHHc-CCcEEEecCCccchhhhHHHHHHHhhhhcCccccccCCCccchhhhCCCcccccCc
Confidence 99999999999999999999998 479999999999999999999999999998654421 0 1
Q ss_pred cccCChhHHHHHHHHHHHHhhccccccccccCCCCCCCcchh
Q psy8282 587 DLDINSSAVTSIKETISSHKAYWSSLKFLVALPENKLLSADY 628 (632)
Q Consensus 587 ~~~~~~~~~~~i~~vi~~~~~~W~~~~~~~~~~~~~~~~~~~ 628 (632)
....+..+.+.|+++.....+.-+.+++..++.|+.+++.+.
T Consensus 347 ~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm~~~p~~~~ 388 (425)
T KOG1342|consen 347 SNMENFNTPHYLESIRNEILENLRMLQHAPSVQMQMIPNPDF 388 (425)
T ss_pred cchhcccCHHHHHHHHHHHHHHHHhccCCCcccccccCCCcc
Confidence 112223445567777777777778888999999999886543
No 7
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=2.4e-49 Score=416.21 Aligned_cols=203 Identities=42% Similarity=0.723 Sum_probs=163.8
Q ss_pred cccChhhHHHHHhhhhcccCHHHHHHHhhc-----------------cCceeeCCCccccCHHHHHHHhcCccccccccC
Q psy8282 87 LALSFADLSVWCYVCEAYVDNHLLALLIYL-----------------YGVMYVKPMSIIITEHPLALSFADLSVWGYVCE 149 (632)
Q Consensus 87 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~-----------------~~~~y~~~~~~~~~~~~~a~~aag~~~~~~~~~ 149 (632)
++++.++|..+ |+.+|+ +.++..... .+++|+++ +++++|++++|++
T Consensus 36 ~~a~~~~L~~v--H~~~Yv--~~l~~~~~~~~~~~~~~~~~~~~~~~~~dt~~~~-----~~~~~a~~a~g~~------- 99 (311)
T PF00850_consen 36 RPATDEELLRV--HDPEYV--DFLESASKEAKEEEEAGSPEFPNILDDGDTPISP-----GSWEAARLAAGGT------- 99 (311)
T ss_dssp ----HHHHTTT--S-HHHH--HHHHHHHHHTSGCTHHHHHHHCCBTSSSSSEBCT-----THHHHHHHHHHHH-------
T ss_pred CCCCHHHHHHc--CCHHHH--HHHHHhcccccccccccccccccccCCCCcceeh-----HHHHHHHHHHHHH-------
Confidence 77888899888 888888 444432210 35677777 9999999999999
Q ss_pred cchhHHHHHHHHcCCCcceeeecCCCCCCCCCCCCCcccccchHHHHHHHHHHhCCCCeEEEEeccccCCcceeecccCC
Q psy8282 150 PYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYND 229 (632)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~a~~~~rppGHHA~~~~~~GFC~~NnvAIAa~~l~~~~g~~rV~IvD~DvHHGnGTq~iF~~d 229 (632)
++|++.|++|+.+++||++|||||||++++++|||+||||||||++|+++++++||+|||||+|||||||+|||+|
T Consensus 100 ----l~a~~~v~~g~~~~~~a~~rppgHHA~~~~a~GFC~~Nnvaiaa~~l~~~~~~~rV~iiD~DvHhGnGtq~if~~d 175 (311)
T PF00850_consen 100 ----LEAADAVLSGEIKNAFALVRPPGHHAERDRAMGFCYFNNVAIAAKYLRKKYGLKRVAIIDFDVHHGNGTQEIFYDD 175 (311)
T ss_dssp ----HHHHHHHHTTSSSEEEEEESS--TT-BTTBBBTTBSS-HHHHHHHHHHHTTTTSSEEEEE-SSS--HHHHHHTTT-
T ss_pred ----HHHHHhhhcccccceeeecCccccccCcCcCcceeeeccHHHHHHHHhhccccceEEEEEeCCCCcccchhheeCC
Confidence 9999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCEEEEeeccCCCCCCCC-CCCCCCCCCcCCCCCccceeeccCCCCCCCcHHHHHHHHHHHHHHHhh-cccccccchhcc
Q psy8282 230 PRVLYISVHRYDHGSFFP-HSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYAL-DNHGLSRVLILD 307 (632)
Q Consensus 230 p~Vl~iSiH~~~~g~fyP-g~~~~~~~~~G~g~g~g~~vNipl~~~g~~D~~Yl~~~~~~l~p~~~~-D~~~lg~~l~~~ 307 (632)
|+|+|+|||+++ +.||| +++ ...++|++.|+|+++||||| +|++|++|+.+|+++|.|++++ +|..+ +++.+
T Consensus 176 ~~V~~~SiH~~~-~~~yP~~tG--~~~e~G~~~g~g~~~NipL~-~g~~d~~y~~~~~~~l~~~~~~f~P~~i--vvsaG 249 (311)
T PF00850_consen 176 PRVLYISIHQYP-GNFYPFGTG--FPDEIGEGKGKGYNLNIPLP-PGTGDDEYLEAFEEILLPALEEFRPDLI--VVSAG 249 (311)
T ss_dssp SSEEEEEEEE-C-TTSTTTSS----TT--ESGGGTTSEEEEEE--TTEBHHHHHHHHHHHHHHHHHHHT-SEE--EEEE-
T ss_pred CCEEecCccccc-cccCCCcCC--CccccCCCcccceeEecccc-cccchHHHHHHHhhccccchhcccCcEE--EEccC
Confidence 999999999984 56899 764 56889999999999999999 8999999999999999999988 88774 48999
Q ss_pred cccccCCC
Q psy8282 308 WDVHHGNG 315 (632)
Q Consensus 308 w~~~~~~~ 315 (632)
+|++.+|+
T Consensus 250 ~D~~~~Dp 257 (311)
T PF00850_consen 250 FDAHAGDP 257 (311)
T ss_dssp STTBTTST
T ss_pred cccchhcc
Confidence 99998883
No 8
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.6e-49 Score=416.09 Aligned_cols=222 Identities=36% Similarity=0.628 Sum_probs=193.5
Q ss_pred HHHHHhhhhhhcCCcc-eeeecCCcccChhhHHHHHhhhhcccCHHHHHHHhhc------cCceeeCCCccccCHHHHHH
Q psy8282 64 ALLIYLYGVMYVNPMS-IIITEHPLALSFADLSVWCYVCEAYVDNHLLALLIYL------YGVMYVKPMSIIITEHPLAL 136 (632)
Q Consensus 64 ~qL~~Iy~~L~v~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~------~~~~y~~~~~~~~~~~~~a~ 136 (632)
..++.+.+.+...... .+....|..++.++|..+ |+++|+ +.++..... -++++++| +++++|+
T Consensus 26 ~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~v--H~~~yv--~~l~~~~~~~~~~~~d~d~~~s~-----~~~~~a~ 96 (340)
T COG0123 26 DRLRLILELLESSGLPDSLELVEPRPATLEELLLV--HSPDYV--EFLESLSEEEGYGNLDGDTPVSP-----GTYEAAR 96 (340)
T ss_pred HHHHHHHHHHHhcCccccccccCCCcCCHHHHHhh--CCHHHH--HHHHHhccccccccccCCCccCh-----HHHHHHH
Confidence 3555666666665433 445588999999999999 999998 555554322 13466666 9999999
Q ss_pred HhcCccccccccCcchhHHHHHHHHcCCCcceeeecCCCCCCCCCCCCCcccccchHHHHHHHHHHhCCCCeEEEEeccc
Q psy8282 137 SFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDV 216 (632)
Q Consensus 137 ~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rppGHHA~~~~~~GFC~~NnvAIAa~~l~~~~g~~rV~IvD~Dv 216 (632)
+++|++ ++|++++++|+ +++|+++|||||||++++++|||+|||+||||++|+++ +++||+||||||
T Consensus 97 ~a~G~a-----------l~A~~~v~~g~-~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~-~~~RVaIiD~Dv 163 (340)
T COG0123 97 LAAGGA-----------LTAVDAVLEGE-DNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKK-GVKRVAIIDFDV 163 (340)
T ss_pred HHhhHH-----------HHHHHHHHcCc-cceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHc-CCCcEEEEEecC
Confidence 999999 99999999998 89999999999999999999999999999999999988 899999999999
Q ss_pred cCCcceeecccCCCCEEEEeeccCCCCCCCCCCCCCCCCCcCCCCCccceeeccCCCCCCCcHHHHHHHHHHHHHHHhh-
Q psy8282 217 HHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYAL- 295 (632)
Q Consensus 217 HHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyPg~~~~~~~~~G~g~g~g~~vNipl~~~g~~D~~Yl~~~~~~l~p~~~~- 295 (632)
|||||||+|||+||+|+|+|+|+++. .+||+|+. .+++|+|. +|+++||||| +|++|++|+.+|+.+++|++++
T Consensus 164 HHGnGTqeify~~~~V~~~S~H~~~~-~~yPgtg~--~~e~g~g~-~g~~vNiPLp-~g~~d~~y~~a~~~~v~~~~~~f 238 (340)
T COG0123 164 HHGNGTQEIFYDDDDVLTVSLHQDGR-PFYPGTGG--ADEIGEGK-EGNNVNIPLP-PGTGDDSYLEALEEIVLPLLEEF 238 (340)
T ss_pred CCChhhHHHHccCCCeEEEeccCCCC-CCCCcCCC--ccccccCc-ccceEeeecC-CCCCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999643 68999875 68899998 9999999998 9999999999999999999988
Q ss_pred cccccccchhcccccccCC
Q psy8282 296 DNHGLSRVLILDWDVHHGN 314 (632)
Q Consensus 296 D~~~lg~~l~~~w~~~~~~ 314 (632)
+|..+ ++|.++|+|.+|
T Consensus 239 ~Pdlv--ivsaG~D~h~~D 255 (340)
T COG0123 239 KPDLV--IVSAGFDAHRGD 255 (340)
T ss_pred CCCEE--EEecCcccCCCC
Confidence 77773 489999999887
No 9
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=5.8e-47 Score=408.54 Aligned_cols=226 Identities=24% Similarity=0.367 Sum_probs=190.8
Q ss_pred hhHHHHHHHhhhhhhcCCcce-eeecCCcccChhhHHHHHhhhhcccCHHHHHHHh---------hc---c-CceeeCCC
Q psy8282 60 NHLLALLIYLYGVMYVNPMSI-IITEHPLALSFADLSVWCYVCEAYVDNHLLALLI---------YL---Y-GVMYVKPM 125 (632)
Q Consensus 60 ~~~l~qL~~Iy~~L~v~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~---------~~---~-~~~y~~~~ 125 (632)
+..-..|..+++.|...++.. .....|.+++.++|..+ |+++|+ +.++... .. + +++++
T Consensus 44 Pe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~v--Hs~~YI--~~l~~~~~~~~~~~~~~~~~~~d~Dtpv--- 116 (429)
T PTZ00346 44 AMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAY--HTDTYL--ANLGLHSCRSWLWNAETSKVFFSGDCPP--- 116 (429)
T ss_pred CCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHh--CCHHHH--HHHHHhcccccccccccccccccCCCCC---
Confidence 445556677777777777654 33467889999999999 999999 5554321 00 1 22343
Q ss_pred ccccCHHHHHHHhcCccccccccCcchhHHHHHHHHcCCCcceeeecCCCC-CCCCCCCCCcccccchHHHHHHHHHHhC
Q psy8282 126 SIIITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPG-HHAEQDEPCGFCIFNNVSVAAKYALDNH 204 (632)
Q Consensus 126 ~~~~~~~~~a~~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rppG-HHA~~~~~~GFC~~NnvAIAa~~l~~~~ 204 (632)
++++|++|++++|++ ++|++.+++|+.+ ++++|||| |||++++++|||+|||+||||++|++++
T Consensus 117 --~~~~~~~a~laaGgs-----------l~Aa~~v~~g~~~--~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~~ll~~~ 181 (429)
T PTZ00346 117 --VEGLMEHSIATASGT-----------LMGAVLLNSGQVD--VAVHWGGGMHHSKCGECSGFCYVNDIVLGILELLKCH 181 (429)
T ss_pred --ChHHHHHHHHHHHHH-----------HHHHHHHHcCCCC--EEEeCCCCcCcCCCCCCCcchHHhHHHHHHHHHHHcC
Confidence 449999999999999 9999999999865 78999999 9999999999999999999999999864
Q ss_pred CCCeEEEEeccccCCcceeecccCCCCEEEEeeccCCCCCCCCCCCCCCCCCcCCCCCccceeeccCCCCCCCcHHHHHH
Q psy8282 205 GLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAA 284 (632)
Q Consensus 205 g~~rV~IvD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyPg~~~~~~~~~G~g~g~g~~vNipl~~~g~~D~~Yl~~ 284 (632)
+||+|||||||||||||+|||+||+|||+|+|+++. .|||++| ...++|.|.|+|+++||||| +|++|++|+.+
T Consensus 182 --~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~-~fyPgtG--~~~e~G~g~G~g~~vNVPL~-~G~~D~~Yl~~ 255 (429)
T PTZ00346 182 --DRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGE-SFFPGTG--HPRDVGYGRGRYYSMNLAVW-DGITDFYYLGL 255 (429)
T ss_pred --CeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCC-CCCCCCC--CccccCCCCCceeEEeeeCC-CCcCHHHHHHH
Confidence 799999999999999999999999999999999753 5899975 46789999999999999999 99999999999
Q ss_pred HHHHHHHHHhh-cccccccchhcccccccCCC
Q psy8282 285 FQQVILPMYAL-DNHGLSRVLILDWDVHHGNG 315 (632)
Q Consensus 285 ~~~~l~p~~~~-D~~~lg~~l~~~w~~~~~~~ 315 (632)
|+++|.|++++ .|..+ +++.++|++.+|+
T Consensus 256 f~~ii~p~l~~F~PdlI--vvsaG~Da~~~Dp 285 (429)
T PTZ00346 256 FEHALHSIVRRYSPDAI--VLQCGADSLAGDR 285 (429)
T ss_pred HHHHHHHHHHhcCCCEE--EEECCccCCCCCC
Confidence 99999999988 77763 4888999998873
No 10
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=3.5e-46 Score=404.53 Aligned_cols=226 Identities=25% Similarity=0.396 Sum_probs=190.8
Q ss_pred HHHHHHhhhhhhcCCcceee-ecCCcccChhhHHHHHhhhhcccCHHHHHHHhh-------------ccCceeeCCCccc
Q psy8282 63 LALLIYLYGVMYVNPMSIII-TEHPLALSFADLSVWCYVCEAYVDNHLLALLIY-------------LYGVMYVKPMSII 128 (632)
Q Consensus 63 l~qL~~Iy~~L~v~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-------------~~~~~y~~~~~~~ 128 (632)
-..++.+...|...++...+ ...|.+++.++|..+ |+++|+ +.++.... +++....|| ++
T Consensus 27 P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~v--Hs~~YI--~~L~~~~~~~~~~~~~~~~~f~lg~~~D~p--v~ 100 (436)
T PTZ00063 27 PQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLF--HDEEYV--DFLSSISPENYRDFTYQLKRFNVGEATDCP--VF 100 (436)
T ss_pred hHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHh--CCHHHH--HHHHHhChhhcccchhhhhhcccCCCCCCC--cc
Confidence 34666677777777775433 478899999999999 999998 44443221 122112344 34
Q ss_pred cCHHHHHHHhcCccccccccCcchhHHHHHHHHcCCCcceeeecCCCC-CCCCCCCCCcccccchHHHHHHHHHHhCCCC
Q psy8282 129 ITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPG-HHAEQDEPCGFCIFNNVSVAAKYALDNHGLS 207 (632)
Q Consensus 129 ~~~~~~a~~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rppG-HHA~~~~~~GFC~~NnvAIAa~~l~~~~g~~ 207 (632)
+++|++|++++||+ ++|++.+++|+. .+|++|||| |||++++++|||+||||||||++|++++ +
T Consensus 101 ~gl~~~a~~aaGgs-----------l~Aa~~l~~g~~--~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L~~~~--~ 165 (436)
T PTZ00063 101 DGLFEFQQSCAGAS-----------IDGAYKLNNHQA--DICVNWSGGLHHAKRSEASGFCYINDIVLGILELLKYH--A 165 (436)
T ss_pred cHHHHHHHHHHhHH-----------HHHHHHHHcCCC--CEEeeCCCCCCCCccCCCCceeeecHHHHHHHHHHHhC--C
Confidence 49999999999999 999999999875 499999999 9999999999999999999999999865 7
Q ss_pred eEEEEeccccCCcceeecccCCCCEEEEeeccCCCCCCCCCCCCCCCCCcCCCCCccceeeccCCCCCCCcHHHHHHHHH
Q psy8282 208 RVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQ 287 (632)
Q Consensus 208 rV~IvD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyPg~~~~~~~~~G~g~g~g~~vNipl~~~g~~D~~Yl~~~~~ 287 (632)
||+|||||||||||||+||+++|+|||+|+|++. .|||+|| ...++|.+.|+|+++||||+ +|++|++|+.+|++
T Consensus 166 RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~--~ffPgtG--~~~e~G~g~G~g~~vNvPL~-~G~~D~~Y~~~f~~ 240 (436)
T PTZ00063 166 RVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFG--DFFPGTG--DVTDIGVAQGKYYSVNVPLN-DGIDDDSFVDLFKP 240 (436)
T ss_pred eEEEEeCCCCCCcchHHHhccCCCeEEEEeccCC--CcCCCCC--CccccCCCCCCceEEEeeCC-CCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999974 5999975 46789999999999999999 99999999999999
Q ss_pred HHHHHHhh-cccccccchhcccccccCCCC
Q psy8282 288 VILPMYAL-DNHGLSRVLILDWDVHHGNGT 316 (632)
Q Consensus 288 ~l~p~~~~-D~~~lg~~l~~~w~~~~~~~~ 316 (632)
+|.|++++ +|..+ +++.++|++.+|+-
T Consensus 241 ii~~~i~~f~Pd~I--vvqaG~D~~~~DpL 268 (436)
T PTZ00063 241 VISKCVEVYRPGAI--VLQCGADSLTGDRL 268 (436)
T ss_pred HHHHHHHHhCCCEE--EEECCccccCCCCC
Confidence 99999988 77774 48889999998843
No 11
>KOG1342|consensus
Probab=100.00 E-value=1.6e-39 Score=339.55 Aligned_cols=189 Identities=29% Similarity=0.511 Sum_probs=167.0
Q ss_pred cCCcccChhhHHHHHhhhhcccC------HHHH---HHHhhccCceeeCCCccccCHHHHHHHhcCccccccccCcchhH
Q psy8282 84 EHPLALSFADLSVWCYVCEAYVD------NHLL---ALLIYLYGVMYVKPMSIIITEHPLALSFADLSVWGYVCEPYVDN 154 (632)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~~~~l~------~~~~---~~~~~~~~~~y~~~~~~~~~~~~~a~~aag~~~~~~~~~~~~~~ 154 (632)
.+|..++.+|+.++ |+++|++ ++.+ .+....|+....|| +|+++|+.+++.+||+ +
T Consensus 52 ~~p~~a~~~dm~~F--Ht~eYi~fL~~V~p~n~~~~~~~~~~fNvg~DCP--vF~gL~~fC~~~~GgS-----------l 116 (425)
T KOG1342|consen 52 YRPDKASAQDMTRF--HTDEYINFLQSVTPENMETFNKELKQFNVGEDCP--VFDGLYDYCQLYTGGS-----------L 116 (425)
T ss_pred ccCCCCCHHHHHhh--chHHHHHHHhhCCcccccccchHHHhcCCCCCCc--cccCHHHHHHHhcccc-----------h
Confidence 67789999999999 9999882 1111 11112344456688 8999999999999999 9
Q ss_pred HHHHHHHcCCCcceeeecCCCC-CCCCCCCCCcccccchHHHHHHHHHHhCCCCeEEEEeccccCCcceeecccCCCCEE
Q psy8282 155 HVVDSVLNGESAHGVAIIRPPG-HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVL 233 (632)
Q Consensus 155 ~~~~~v~~~~~~~a~~~~rppG-HHA~~~~~~GFC~~NnvAIAa~~l~~~~g~~rV~IvD~DvHHGnGTq~iF~~dp~Vl 233 (632)
.|+..+..++.+ +||+|++| |||++++|+|||++|||++||..|++.+ +||++||+|+|||||+|++||...||+
T Consensus 117 ~aa~kLn~~~~d--IaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLlK~h--~RVLYIDIDvHHGDGVEeAFy~TDRVm 192 (425)
T KOG1342|consen 117 NAAQKLNRGECD--IAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKYH--KRVLYIDIDVHHGDGVEEAFYTTDRVM 192 (425)
T ss_pred HHHHHhCCCCce--EEEecCcccccccccccCcceeehHHHHHHHHHHHhC--CceEEEEecccCCccHHHHHhccceeE
Confidence 999999988766 99999999 9999999999999999999999999887 699999999999999999999999999
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCcCCCCCccceeeccCCCCCCCcHHHHHHHHHHHHHHHhh
Q psy8282 234 YISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYAL 295 (632)
Q Consensus 234 ~iSiH~~~~g~fyPg~~~~~~~~~G~g~g~g~~vNipl~~~g~~D~~Yl~~~~~~l~p~~~~ 295 (632)
|+|+|.+.++ |||||| +..++|.|.|+.|.|||||. +|++|+.|..+|+.+|.|+++.
T Consensus 193 TvSfHKyg~~-fFPGTG--~l~d~G~~kGkyyavNVPL~-dGidD~sy~~if~pIi~~v~e~ 250 (425)
T KOG1342|consen 193 TVSFHKYGPG-FFPGTG--DLSDIGAGKGKYYAVNVPLK-DGIDDESYESIFKPIISKVMER 250 (425)
T ss_pred EEEEEeccCC-CCCCCC--cceeccCCCCceEEEccchh-ccCCcHHHHHHHHHHHHHHHHH
Confidence 9999998644 899975 57889999999999999998 9999999999999999999887
No 12
>KOG1343|consensus
Probab=100.00 E-value=5.7e-39 Score=367.28 Aligned_cols=252 Identities=38% Similarity=0.648 Sum_probs=234.0
Q ss_pred HHHHHHHHcCCCcceeEeeCCCCCCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEeeeccccCccchhcccc--CCC
Q psy8282 366 NKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYN--DPR 443 (632)
Q Consensus 366 ~~av~~v~~g~~~~afalvRPpGHHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~--dp~ 443 (632)
+..++.++.|+..++++.+|||||||+++...|||+|||||++++....++..+||+|+|||+|||+|||..|++ |++
T Consensus 140 ~~~~~~~~~~~~~n~~a~v~p~~hhsep~~~~~~cl~n~Va~~~~~~~~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~ 219 (797)
T KOG1343|consen 140 SGSYKAVLAGKASNGKADFRPPGHHSEPNLKVGFCLFNNVAERRSSPLLRRKKRRILIVDWDVHHGPGTQPSSPNNGDQR 219 (797)
T ss_pred ccccccccCCcccCccCcCCCCCCccccchhcchhHHHHHHHHhhccccccccceeEeecccccCCCCCCCccCCCcccc
Confidence 777889999999999999999999999999999999999999999988887789999999999999999999999 999
Q ss_pred eEEEeeccCCCCCCCCCCCCCCCCCcCCCCCCccEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCC
Q psy8282 444 VLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACV 523 (632)
Q Consensus 444 Vl~iSiH~~~~g~~yPgt~~g~~~~~G~g~g~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~ 523 (632)
|+++|+|++.+|.|||+...|....+|.+.|.|+++|+||...|++|.+|..+|..+++|...+|+||+|++|||||+..
T Consensus 220 vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~~~~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~l 299 (797)
T KOG1343|consen 220 VLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGMTDADYEAAFLHVLLPHASEFQPDLLLVSAGFDALL 299 (797)
T ss_pred cccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCCcchhhhhhhhccCccchhhcCcceEEeeccccccc
Confidence 99999999999999999988888899999999999999999899999999999999999999999999999999999999
Q ss_pred CCC-CCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHHHHHcCCCCCCCCccccCChhHHHHHHHHH
Q psy8282 524 NDP-LGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKETI 602 (632)
Q Consensus 524 ~Dp-lg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~~~Llg~~~~~~~~~~~~~~~~~~~i~~vi 602 (632)
+|| +|.|..|+.+|.++++..+-+.++++++++||||+++.++++ ...+..|+|++.+.+..+..|..++.+++..++
T Consensus 300 g~~~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~~-~~~~~~llg~~~~~~~~~~~p~~~~~e~~~~~~ 378 (797)
T KOG1343|consen 300 GDGPVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQS-QLVLNKLLGKPIEQLRQPGSPKEEAEEELQSVQ 378 (797)
T ss_pred cCcccCcccCCcccHHHHhccccccccCccceecchhHHHHHHHHh-hhhHHhhcCCCccccccCCCchHHHHHHhhhhH
Confidence 997 699999999999999984444448999999999999999999 788899999998877666557788999999999
Q ss_pred HHHhhccccccccccC
Q psy8282 603 SSHKAYWSSLKFLVAL 618 (632)
Q Consensus 603 ~~~~~~W~~~~~~~~~ 618 (632)
+.+.++|+++....+.
T Consensus 379 ~~~~~~w~~~~~~~~~ 394 (797)
T KOG1343|consen 379 AVQEDRWPCEGGSTSA 394 (797)
T ss_pred HHhhcccccccCCcch
Confidence 9999999999864433
No 13
>KOG1344|consensus
Probab=99.96 E-value=5.7e-30 Score=253.58 Aligned_cols=196 Identities=24% Similarity=0.440 Sum_probs=162.9
Q ss_pred HHHHHHHHcCCC--cceeEeeCCCC-CCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEeeeccccCccchhccccCC
Q psy8282 366 NKVVDSVLNGES--AHGVAIIRPPG-HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDP 442 (632)
Q Consensus 366 ~~av~~v~~g~~--~~afalvRPpG-HHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~dp 442 (632)
++|...|+.|++ +.+.|++-.+| |||..+++.|||.+-|+.+|+..+..+..+.|++|||+|+|+|||.+.-|.++
T Consensus 116 ~QagGtilA~kLAle~GWAINvGGGFHHcss~rGGGFC~yADItl~I~~lFer~~isr~mivDLDAHQGNghErdf~~~- 194 (324)
T KOG1344|consen 116 LQAGGTILAAKLALERGWAINVGGGFHHCSSSRGGGFCAYADITLAIFFLFERKAISRAMIVDLDAHQGNGHERDFEDD- 194 (324)
T ss_pred eccCceeehhhhhhhcCeEEeecCccceeccCCCCceeehhhHHHHHHHHHhhhhhhheEEEecccccCCccccccccc-
Confidence 667777777764 78899988888 99999999999999999999999998888999999999999999999999988
Q ss_pred CeEEEeeccCCCCCCCCCCCCCCCCCcCCCCCCccEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Q psy8282 443 RVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDAC 522 (632)
Q Consensus 443 ~Vl~iSiH~~~~g~~yPgt~~g~~~~~G~g~g~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~ 522 (632)
.|..+.+.. ..+||+...+. +..-..|.+- .|+.|++|+..+++.++..+.+|+||+|++.||.|..
T Consensus 195 ~vyi~d~yn---r~iyp~D~~Ak-------~~Ir~kVEl~---~gTeddeYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiL 261 (324)
T KOG1344|consen 195 AVYIFDMYN---RFIYPRDHVAK-------ESIRCKVELR---NGTEDDEYLRKLKRCLMQSLAEFRPDMVVYNAGTDIL 261 (324)
T ss_pred eeehhhhhh---hhccchhHHHH-------HHhhheeeee---cCCCchHHHHHHHHHHHHHHHhhCCcEEEEeCCCccc
Confidence 677766653 45899752211 1112234443 6999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHHHhc---CCcEEEEeCCCCCcchHHHHHHHHHHHH
Q psy8282 523 VNDPLGGCKVSPEAYAHFTHWLKALA---QGRIILALEGGYNISSISYAMTLCTKAL 576 (632)
Q Consensus 523 ~~Dplg~~~lt~~~y~~~~~~l~~~a---~grvv~vLEGGY~~~~la~~~~~~~~~L 576 (632)
.+||||.+.+|++|..++.+.+.++. +.|+++++.|||-..+ ++.++-.+..|
T Consensus 262 eGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~s-ArvIaDSI~NL 317 (324)
T KOG1344|consen 262 EGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKAS-ARVIADSIVNL 317 (324)
T ss_pred cCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceehhh-hhhhHHHHHhH
Confidence 99999999999999999999999877 4589999999998653 44444444444
No 14
>KOG1344|consensus
Probab=99.82 E-value=7.3e-21 Score=189.15 Aligned_cols=210 Identities=20% Similarity=0.232 Sum_probs=160.9
Q ss_pred ccchhhchhHHHHHHHhhhhhhcCCcceeee-cCCcccChhhHHHHHhhhhcccCHHHHHHHhh-----ccCceeeCCCc
Q psy8282 53 VCEAYVDNHLLALLIYLYGVMYVNPMSIIIT-EHPLALSFADLSVWCYVCEAYVDNHLLALLIY-----LYGVMYVKPMS 126 (632)
Q Consensus 53 ~Cd~~v~~~~l~qL~~Iy~~L~v~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-----~~~~~y~~~~~ 126 (632)
.--+.+++---+++..+...|....+-.-.+ ..|..+|.+||.++ |+++|| ++++.... +...+-.-|.-
T Consensus 29 mGlEkLHPFDa~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rv--Htr~YL--kslr~s~~vA~I~EiP~v~flPn~ 104 (324)
T KOG1344|consen 29 MGLEKLHPFDAAKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRV--HTRKYL--KSLRWSIKVAQITEIPFVGFLPNC 104 (324)
T ss_pred cchhhcCcCcccchhHHHHHHHHhccccccccccCcccCHHHHHhH--hhHHHH--HHhhccceeeEEEeccccccCchh
Confidence 3445666666678888888887766654444 89999999999999 999999 77765321 11111112222
Q ss_pred -cccCHHHHHHHhcCccccccccCcchhHHHHHHHHcCCCcceeeecCCCC-CCCCCCCCCcccccchHHHHHHHHHHhC
Q psy8282 127 -IIITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPG-HHAEQDEPCGFCIFNNVSVAAKYALDNH 204 (632)
Q Consensus 127 -~~~~~~~~a~~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rppG-HHA~~~~~~GFC~~NnvAIAa~~l~~~~ 204 (632)
+.......-++.+|+| +.|++..+ ++++||+..+| |||..+++.|||.+.|+.+||..+..+.
T Consensus 105 ~iqrk~LrPlR~QagGt-----------ilA~kLAl----e~GWAINvGGGFHHcss~rGGGFC~yADItl~I~~lFer~ 169 (324)
T KOG1344|consen 105 IIQRKLLRPLRLQAGGT-----------ILAAKLAL----ERGWAINVGGGFHHCSSSRGGGFCAYADITLAIFFLFERK 169 (324)
T ss_pred hhhhhhccceeeccCce-----------eehhhhhh----hcCeEEeecCccceeccCCCCceeehhhHHHHHHHHHhhh
Confidence 3345556667789999 66655544 47899999999 9999999999999999999999999888
Q ss_pred CCCeEEEEeccccCCcceeecccCCCCEEEEeeccCCCCCCCCCCCCCCCCCcCCCCCccceeeccCCCCCCCcHHHHHH
Q psy8282 205 GLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAA 284 (632)
Q Consensus 205 g~~rV~IvD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyPg~~~~~~~~~G~g~g~g~~vNipl~~~g~~D~~Yl~~ 284 (632)
.+.|++|||+|+|||||.+.-|.++ .|.++.+. +...||+.-. +-+-....|.|. .|+.|++|+.-
T Consensus 170 ~isr~mivDLDAHQGNghErdf~~~-~vyi~d~y---nr~iyp~D~~---------Ak~~Ir~kVEl~-~gTeddeYLrk 235 (324)
T KOG1344|consen 170 AISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMY---NRFIYPRDHV---------AKESIRCKVELR-NGTEDDEYLRK 235 (324)
T ss_pred hhhheEEEecccccCCccccccccc-eeehhhhh---hhhccchhHH---------HHHHhhheeeee-cCCCchHHHHH
Confidence 8999999999999999999999887 77777766 4457896421 112345667776 79999999999
Q ss_pred HHHHHHHHHhh
Q psy8282 285 FQQVILPMYAL 295 (632)
Q Consensus 285 ~~~~l~p~~~~ 295 (632)
+++.++..+++
T Consensus 236 l~r~l~~sl~e 246 (324)
T KOG1344|consen 236 LKRCLMQSLAE 246 (324)
T ss_pred HHHHHHHHHHh
Confidence 99999988887
No 15
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=99.09 E-value=2.4e-11 Score=99.79 Aligned_cols=45 Identities=44% Similarity=0.938 Sum_probs=39.9
Q ss_pred ceeecccchhhHHHhhcccCCCCceeecCceeEEecccchhhchh
Q psy8282 17 SLVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVDNH 61 (632)
Q Consensus 17 ~~v~CgR~~~~Ha~~H~~~~~H~~~~~~~~~svwCy~Cd~~v~~~ 61 (632)
++++|||+.++||++|+++++|++++++.+.+||||.||+||.++
T Consensus 18 g~~~C~~~~~~Ha~~H~~~~~H~l~v~~~~~~i~C~~C~~~v~~~ 62 (63)
T PF02148_consen 18 GYVGCGRYSNGHALKHYKETGHPLAVSLSTGSIWCYACDDYVYDP 62 (63)
T ss_dssp S-EEETTTSTSHHHHHHHHHT--EEEETTTTCEEETTTTEEEEST
T ss_pred CcccccCCcCcHHHHhhcccCCeEEEECCCCeEEEcCCCcEEeCC
Confidence 679999999999999999999999999999999999999999754
No 16
>KOG1873|consensus
Probab=98.43 E-value=1e-07 Score=108.23 Aligned_cols=61 Identities=23% Similarity=0.452 Sum_probs=47.5
Q ss_pred ccceeeccc-chhhHHHhhcccC---CCCceeecCceeEEecccchhhc-hhHHHHHHHhhhhhhc
Q psy8282 15 NFSLVRCGR-YIEEHSMLHGVST---EHPLALSFADLSVWCYVCEAYVD-NHLLALLIYLYGVMYV 75 (632)
Q Consensus 15 ~~~~v~CgR-~~~~Ha~~H~~~~---~H~~~~~~~~~svwCy~Cd~~v~-~~~l~qL~~Iy~~L~v 75 (632)
+-++++||| ...+|+++||+.. +||++|++.+|.+|||.||..+. ...--+|.+..+.+..
T Consensus 98 kCG~q~CG~~~~~~halkH~~~~r~~~Hclvin~~n~~~WCy~Cd~kl~~~~~kn~l~e~vd~l~k 163 (877)
T KOG1873|consen 98 KCGYQGCGRNSESQHALKHFLTPRSEPHCLVINLINWLIWCYSCDAKLVPFDKKNLLGEKVDLLIK 163 (877)
T ss_pred ccCCeeeCCCcccchhhhhhcccCCCCeeEEEEeeeeeeEEEeccchhccccchhHHHHHHHHHHH
Confidence 457899999 9999999999965 99999999999999999999444 3333344444444443
No 17
>KOG0804|consensus
Probab=98.35 E-value=2.4e-07 Score=100.47 Aligned_cols=51 Identities=39% Similarity=0.610 Sum_probs=47.3
Q ss_pred ceeEEEEecccceeecccchhhHHHhhcccCCCCceeecCceeEEecccchhhc
Q psy8282 6 NLCYFVIKGNFSLVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVD 59 (632)
Q Consensus 6 ~~~~~~~~~~~~~v~CgR~~~~Ha~~H~~~~~H~~~~~~~~~svwCy~Cd~~v~ 59 (632)
||--++|-| +++||||..+||++|+++++||.+|++.+-.||.|+-|+||+
T Consensus 239 ~LwicliCg---~vgcgrY~eghA~rHweet~H~yalel~tqrVWDYAGDnYVh 289 (493)
T KOG0804|consen 239 DLWICLICG---NVGCGRYKEGHARRHWEETGHCYALELETQRVWDYAGDNYVH 289 (493)
T ss_pred cEEEEEEcc---ceecccccchhHHHHHHhhcceEEEeecceeeeecccchhhh
Confidence 566677776 589999999999999999999999999999999999999999
No 18
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=5.1e-05 Score=83.83 Aligned_cols=43 Identities=35% Similarity=0.842 Sum_probs=36.7
Q ss_pred ceeeccc--c---hhhHHHhhcccCCCCceeecCc-----eeEEecccchhhc
Q psy8282 17 SLVRCGR--Y---IEEHSMLHGVSTEHPLALSFAD-----LSVWCYVCEAYVD 59 (632)
Q Consensus 17 ~~v~CgR--~---~~~Ha~~H~~~~~H~~~~~~~~-----~svwCy~Cd~~v~ 59 (632)
+.++||| | -|+||+.||++++||+++.+-+ ..+|||.||+++.
T Consensus 192 G~vgCGR~QyG~~GngHAlsHY~~t~Hplavkl~Sls~~~~diyCY~CD~e~R 244 (749)
T COG5207 192 GYVGCGRMQYGAEGNGHALSHYEETQHPLAVKLPSLSKEDCDIYCYLCDSEIR 244 (749)
T ss_pred CcccccceeecCCCCcchhhhhhccCCceEEEccccccccccEEEEecCcccc
Confidence 4589999 3 5899999999999999987654 5599999999965
No 19
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.36 E-value=0.00011 Score=81.59 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=45.9
Q ss_pred eeecccchhhHHHhhcccCCCCceeecCceeEEecccchhhchhHHHHHH
Q psy8282 18 LVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVDNHLLALLI 67 (632)
Q Consensus 18 ~v~CgR~~~~Ha~~H~~~~~H~~~~~~~~~svwCy~Cd~~v~~~~l~qL~ 67 (632)
++.|||..+.||..|+++++|+++|++.+..||||.|++||....|+.++
T Consensus 36 ~~~~g~~~~~ha~~H~~~~~H~~~v~l~t~~~yc~~~~~~v~d~~l~~i~ 85 (440)
T cd02669 36 KYFQGRGKGSHAYTHSLEDNHHVFLNLETLKFYCLPDNYEIIDSSLDDIK 85 (440)
T ss_pred CeecCCCCCcHHHHHhhccCCCEEEECCCCCEEEeCCCCEEeCccHHHHH
Confidence 56788889999999999999999999999999999999999988777655
No 20
>KOG0944|consensus
Probab=97.33 E-value=0.00011 Score=83.67 Aligned_cols=49 Identities=35% Similarity=0.615 Sum_probs=41.0
Q ss_pred cceeecccc------hhhHHHhhcccCCCCceeecCc-----eeEEecccchhhchhHHH
Q psy8282 16 FSLVRCGRY------IEEHSMLHGVSTEHPLALSFAD-----LSVWCYVCEAYVDNHLLA 64 (632)
Q Consensus 16 ~~~v~CgR~------~~~Ha~~H~~~~~H~~~~~~~~-----~svwCy~Cd~~v~~~~l~ 64 (632)
-+.|+|||. -|+||+.||++++||+++.+-+ ..||||.||+.|....|+
T Consensus 197 cG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaVKLgsIs~dg~DvycY~cDd~v~dPnl~ 256 (763)
T KOG0944|consen 197 CGSVGCGRKQFGGSGGNGHALSHYRETGHPLAVKLGSISPDGADVYCYDCDDEVRDPNLE 256 (763)
T ss_pred cCceeecceeecCCCCCcchHHhhhhcCCceEEEecccCCCccceeeecccccccCccHH
Confidence 357999993 2899999999999999987754 569999999999976555
No 21
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=97.02 E-value=0.0003 Score=54.73 Aligned_cols=33 Identities=33% Similarity=0.543 Sum_probs=30.2
Q ss_pred cceeecccchhhHHHhhcccCCCCceeecCcee
Q psy8282 16 FSLVRCGRYIEEHSMLHGVSTEHPLALSFADLS 48 (632)
Q Consensus 16 ~~~v~CgR~~~~Ha~~H~~~~~H~~~~~~~~~s 48 (632)
-.+++|||+.++|+++|+++++|++++++.+.+
T Consensus 17 C~~~~c~~~~~~h~~~H~~~t~H~~~~~~~~~~ 49 (50)
T smart00290 17 CGQVGCGRYQLGHALEHFEETGHPLVVKLGTQR 49 (50)
T ss_pred CCCcccCCCCCcHHHHHhhhhCCCEEEEccccc
Confidence 578999999999999999999999999998764
No 22
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=74.70 E-value=18 Score=34.91 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=42.6
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHH
Q psy8282 479 VNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKA 546 (632)
Q Consensus 479 vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~ 546 (632)
+|.-. .|.+-..++..+++.+.+.+...+||+|+|..|. |....+. +....+.+.|....+.+.+
T Consensus 41 ~N~gi--~G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~-~~~~~~~~~~~~~~~~ii~ 106 (193)
T cd01835 41 YNLGV--RGDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGR-KRPQLSARAFLFGLNQLLE 106 (193)
T ss_pred EeecC--CCCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccC-cccccCHHHHHHHHHHHHH
Confidence 46665 4666667888887776655555899999999998 6655421 1234667777654444443
No 23
>KOG0121|consensus
Probab=66.50 E-value=3.9 Score=38.92 Aligned_cols=49 Identities=29% Similarity=0.575 Sum_probs=35.3
Q ss_pred CCCCCCCCCCCcccc-----chHHHHHHHHHHhcCCCeeEEeeeccccCccchh
Q psy8282 388 GHHAEQDEPCGFCIF-----NNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQA 436 (632)
Q Consensus 388 GHHA~~~~a~GFC~f-----NnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~ 436 (632)
|---..-.++|||++ .++-.|.+|+-...--+|++-+|||.-.=+|-|.
T Consensus 69 GLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQy 122 (153)
T KOG0121|consen 69 GLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQY 122 (153)
T ss_pred ccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhhh
Confidence 434455678999987 3566777888655445799999999877777664
No 24
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=60.51 E-value=39 Score=31.87 Aligned_cols=62 Identities=19% Similarity=0.226 Sum_probs=35.9
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHHh
Q psy8282 477 FNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKAL 547 (632)
Q Consensus 477 ~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~~ 547 (632)
..+|...+ |.+-..++..++ +.+...+||+|+|..|. |...+.+ ..-..+.|..+.+.+++.
T Consensus 25 ~v~n~g~~--G~t~~~~~~~~~----~~~~~~~pd~v~i~~G~ND~~~~~~---~~~~~~~~~~l~~~~~~~ 87 (174)
T cd01841 25 TVNNLGIA--GISSRQYLEHIE----PQLIQKNPSKVFLFLGTNDIGKEVS---SNQFIKWYRDIIEQIREE 87 (174)
T ss_pred eEEecccc--cccHHHHHHHHH----HHHHhcCCCEEEEEeccccCCCCCC---HHHHHHHHHHHHHHHHHH
Confidence 35677763 555556665553 33447899999999998 6544321 111233344555555543
No 25
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=53.65 E-value=39 Score=31.88 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=35.4
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHHh
Q psy8282 478 NVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKAL 547 (632)
Q Consensus 478 ~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~~ 547 (632)
.+|.-++ |..-.+.+..+++. +..++|++|++..|. |...+-+ ..-..+.|..+.+.+++.
T Consensus 25 v~N~Gi~--G~~~~~~~~~~~~~----~~~~~p~~vvi~~G~ND~~~~~~---~~~~~~~~~~lv~~i~~~ 86 (171)
T cd04502 25 VVNRGFG--GSTLADCLHYFDRL----VLPYQPRRVVLYAGDNDLASGRT---PEEVLRDFRELVNRIRAK 86 (171)
T ss_pred eeecCcc--cchHHHHHHHHHhh----hccCCCCEEEEEEecCcccCCCC---HHHHHHHHHHHHHHHHHH
Confidence 4676663 44444555555443 346899999999998 7644322 112233445555555554
No 26
>PF14369 zf-RING_3: zinc-finger
Probab=52.61 E-value=5.2 Score=29.47 Aligned_cols=13 Identities=31% Similarity=0.971 Sum_probs=10.8
Q ss_pred eEEecccchhhch
Q psy8282 48 SVWCYVCEAYVDN 60 (632)
Q Consensus 48 svwCy~Cd~~v~~ 60 (632)
+.|||.|+..|..
T Consensus 2 ~ywCh~C~~~V~~ 14 (35)
T PF14369_consen 2 RYWCHQCNRFVRI 14 (35)
T ss_pred CEeCccCCCEeEe
Confidence 4799999988873
No 27
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=52.21 E-value=59 Score=30.88 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=27.5
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCC
Q psy8282 477 FNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACV 523 (632)
Q Consensus 477 ~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~ 523 (632)
..+|.-+ .|..-.+++..+++.+ ...+||+|+++.|. |+..
T Consensus 33 ~v~n~g~--~G~~~~~~l~~l~~~~----~~~~~d~v~i~~G~ND~~~ 74 (183)
T cd04501 33 EVINRGI--NGDTTSQMLVRFYEDV----IALKPAVVIIMGGTNDIIV 74 (183)
T ss_pred eEEecCc--CCccHHHHHHHHHHHH----HhcCCCEEEEEeccCcccc
Confidence 3466665 3555566777666543 45799999999998 5543
No 28
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=52.16 E-value=65 Score=31.96 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCc
Q psy8282 495 AAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNI 562 (632)
Q Consensus 495 ~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~ 562 (632)
..+++.+..+.++|++|+|||-++-= +. . ..+..+...+. .++++.+-+...
T Consensus 134 ~~l~~~l~~l~~~y~~D~IiiD~pp~---------~~--~----~~~~~l~~~aD-~viiV~~~~~~~ 185 (207)
T TIGR03018 134 QRMRSLLHELARRYPDRIIIIDTPPL---------LV--F----SEARALARLVG-QIVLVVEEGRTT 185 (207)
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCCC---------cc--h----hHHHHHHHhCC-EEEEEEECCCCC
Confidence 34666666667788789999988711 10 0 12334445554 467777777553
No 29
>PF14968 CCDC84: Coiled coil protein 84
Probab=52.01 E-value=19 Score=39.42 Aligned_cols=83 Identities=18% Similarity=0.341 Sum_probs=58.3
Q ss_pred chhhHHHhhcc--------------cCCCCceeec---CceeEEecccchhhchh--------HH------HHHHHhhhh
Q psy8282 24 YIEEHSMLHGV--------------STEHPLALSF---ADLSVWCYVCEAYVDNH--------LL------ALLIYLYGV 72 (632)
Q Consensus 24 ~~~~Ha~~H~~--------------~~~H~~~~~~---~~~svwCy~Cd~~v~~~--------~l------~qL~~Iy~~ 72 (632)
|-..|.++-.. ...+|.+++. .+-.+|||-||..|... +| +=+..+...
T Consensus 17 Y~~~Hq~~L~~~L~rf~~Kl~d~R~~lk~p~v~~~~~~~~~~fWC~fC~~ev~~~~s~~~~~~ai~HLaS~eH~k~vk~F 96 (336)
T PF14968_consen 17 YSPKHQKSLSAFLSRFRSKLSDARFFLKKPSVLRYDPEHRNRFWCVFCDCEVREHDSSFACGGAIEHLASPEHRKNVKKF 96 (336)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCccccceeEeeCccchhhhccchhhhccHHhhcCCHHHHHHHHHH
Confidence 67777665533 1277877554 67789999999999832 22 246677888
Q ss_pred hhcCCcceeeecCCcccChhhHHHHHhhhhcccCH
Q psy8282 73 MYVNPMSIIITEHPLALSFADLSVWCYVCEAYVDN 107 (632)
Q Consensus 73 L~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 107 (632)
+..++-..-+ .....++.+|+++|++.++..++.
T Consensus 97 ~w~~g~~~d~-~d~f~Is~~d~~r~kk~~~~~l~~ 130 (336)
T PF14968_consen 97 WWKNGADMDL-KDKFRISEEDYARFKKKCEKALDE 130 (336)
T ss_pred HHHcCCCccc-ccceeecHHHHHHHHHHHHHHHHH
Confidence 8888777543 335677889999998888877733
No 30
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=51.52 E-value=71 Score=35.05 Aligned_cols=165 Identities=15% Similarity=0.214 Sum_probs=87.2
Q ss_pred CCCCccccchHHHHHHHHHHh-cCCC--eeEEeeeccccCccchhccccCCCeEEEeeccCCCCCCCCCCCCCCCC----
Q psy8282 395 EPCGFCIFNNVSVAAKYALDN-HGLS--RVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPH---- 467 (632)
Q Consensus 395 ~a~GFC~fNnvAIAa~~~~~~-~g~~--RVlIiD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~~yPgt~~g~~~---- 467 (632)
|-.||--+|--.|+-+++... .+.+ +++++ |=|+|.--....|-+++--|.-..+.+.+-| |..|+.+
T Consensus 147 RrygfHgls~~~v~~~~~~~~g~~~~~~~~I~~----hLGtGig~~ai~~Gk~vdgs~G~agEg~~~~-tr~G~id~~~~ 221 (351)
T TIGR02707 147 RKSIFHALNQKAVARRIAKELGKRYEEMNLIVA----HMGGGISVAAHRKGRVIDVNNALDGEGPFSP-ERSGTLPLGDL 221 (351)
T ss_pred hhhchhhhhHHHHHHHHHHHcCCCcccCCEEEE----EeCCCceeeeEECCEEEEcCCCCCCcCCccc-CccCCCCchhH
Confidence 345777788888888877542 1222 56655 8899998888888877766654322211222 1112110
Q ss_pred ----CcCC-C---------CCCccE-----EEec-C-CCCCCChHHHHHHHH-------HHHHHHHHHc--CCCEEEEEc
Q psy8282 468 ----NVGE-G---------KGEGFN-----VNVA-W-NKKGMSDPEYIAAFQ-------QVILPIAYQF--NPELVLVSA 517 (632)
Q Consensus 468 ----~~G~-g---------~g~g~~-----vNvP-l-~~~g~~D~~Yl~~~~-------~vl~p~l~~f--~PdlIvvsA 517 (632)
..+. + .+.|.. .+.- + .....+|+....+++ ..|..++..+ +||.||+..
T Consensus 222 ~~~~~~~~~s~~el~~~l~~~sGl~~~~gs~d~reI~~~a~~GD~~A~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gG 301 (351)
T TIGR02707 222 VDLCYSGKYTKEEMKKKIVGNGGLVAYLGTNDAREVEKRIEAGDEKAKLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTG 301 (351)
T ss_pred HHHHhcCCCCHHHHHHHHHhccCcccccCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 0000 0 000100 0000 0 001123443333333 3445555667 899999999
Q ss_pred CCCCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHHHHHcCCCC
Q psy8282 518 GYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPL 581 (632)
Q Consensus 518 GfDa~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~~~Llg~~~ 581 (632)
|.- +. ......+.+.+..++ | |.++.|.+..++++++. ++.|.|++.
T Consensus 302 GI~--e~---------~~l~~~I~~~l~~~a--~-v~~~pg~~e~~ala~ga---~rv~~~~e~ 348 (351)
T TIGR02707 302 GLA--YS---------KYFVSEIIKRVSFIA--P-VLVYPGEDEMEALAEGA---LRVLRGEEK 348 (351)
T ss_pred hhh--cC---------HHHHHHHHHHHHhhC--C-EEEeCCcHHHHHHHHhH---HHHhcCCcc
Confidence 942 11 222355556666665 3 66679988877777766 566766553
No 31
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.62 E-value=81 Score=29.59 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=23.5
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCC
Q psy8282 478 NVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DAC 522 (632)
Q Consensus 478 ~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~ 522 (632)
.+|.-++ |.+-......+++. + .++||+|+++.|. |..
T Consensus 24 v~n~g~~--G~~~~~~~~~l~~~----~-~~~pd~vvl~~G~ND~~ 62 (169)
T cd01828 24 VANRGIS--GDTTRGLLARLDED----V-ALQPKAIFIMIGINDLA 62 (169)
T ss_pred eEecCcc--cccHHHHHHHHHHH----h-ccCCCEEEEEeeccCCC
Confidence 3455542 44444455544443 3 6899999999997 553
No 32
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.28 E-value=57 Score=30.16 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=25.2
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCC
Q psy8282 477 FNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACV 523 (632)
Q Consensus 477 ~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~ 523 (632)
-.+|.-+ .|..-.+....+.+ .+.+.+||+|+++.|. |...
T Consensus 14 ~~~n~g~--~G~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~ 55 (157)
T cd01833 14 DKDHEGH--SGYLIDQIAAAAAD----WVLAAKPDVVLLHLGTNDLVL 55 (157)
T ss_pred CCCCCCC--CCccHHHHHHHhhh----ccccCCCCEEEEeccCccccc
Confidence 3444444 24444455555543 3456899999999997 4433
No 33
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=45.06 E-value=24 Score=35.39 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCCeEEEEeccccCCc
Q psy8282 194 SVAAKYALDNHGLSRVLILDWDVHHGN 220 (632)
Q Consensus 194 AIAa~~l~~~~g~~rV~IvD~DvHHGn 220 (632)
|+.+.+++.+.| .||++||+|..+||
T Consensus 18 a~~LA~~la~~g-~~VlliD~D~~~~~ 43 (251)
T TIGR01969 18 TANLGVALAKLG-KKVLALDADITMAN 43 (251)
T ss_pred HHHHHHHHHHCC-CeEEEEeCCCCCcc
Confidence 333334444445 79999999998887
No 34
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=44.53 E-value=77 Score=30.31 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=27.9
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCC
Q psy8282 478 NVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACV 523 (632)
Q Consensus 478 ~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~ 523 (632)
..|+-. .|..-.+++..+++ +..++||+|+|..|. |...
T Consensus 43 ~~n~g~--~G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~~ 82 (191)
T cd01836 43 WRLFAK--TGATSADLLRQLAP-----LPETRFDVAVISIGVNDVTH 82 (191)
T ss_pred EEEEec--CCcCHHHHHHHHHh-----cccCCCCEEEEEecccCcCC
Confidence 356665 46666777776665 347899999999998 6543
No 35
>PRK13236 nitrogenase reductase; Reviewed
Probab=44.12 E-value=24 Score=37.41 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCeEEEEeccccCCcceeeccc
Q psy8282 193 VSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFY 227 (632)
Q Consensus 193 vAIAa~~l~~~~g~~rV~IvD~DvHHGnGTq~iF~ 227 (632)
+++-+.+++.+.| +||++||+|.+.+| |.-+|.
T Consensus 22 ~a~NLA~~La~~G-~rVLliD~D~q~~~-~~~l~~ 54 (296)
T PRK13236 22 TSQNTLAAMAEMG-QRILIVGCDPKADS-TRLMLH 54 (296)
T ss_pred HHHHHHHHHHHCC-CcEEEEEccCCCCc-cchhcc
Confidence 4455555555555 79999999998877 554443
No 36
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=43.31 E-value=87 Score=29.28 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=22.5
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC
Q psy8282 478 NVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY 519 (632)
Q Consensus 478 ~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf 519 (632)
.+|.-.. |.+-...+..+++. +..++||+|+|..|.
T Consensus 39 v~n~g~~--G~~~~~~~~~l~~~----~~~~~pd~v~i~~G~ 74 (177)
T cd01822 39 VINAGVS--GDTTAGGLARLPAL----LAQHKPDLVILELGG 74 (177)
T ss_pred EEecCcC--CcccHHHHHHHHHH----HHhcCCCEEEEeccC
Confidence 3455542 44334445555443 456899999999997
No 37
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=43.13 E-value=25 Score=35.21 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCCeeEEeeeccccCc
Q psy8282 406 SVAAKYALDNHGLSRVLILDWDVHHGN 432 (632)
Q Consensus 406 AIAa~~~~~~~g~~RVlIiD~DvHHGn 432 (632)
|+.+.+++.+.| +||++||+|..+||
T Consensus 18 a~~LA~~la~~g-~~VlliD~D~~~~~ 43 (251)
T TIGR01969 18 TANLGVALAKLG-KKVLALDADITMAN 43 (251)
T ss_pred HHHHHHHHHHCC-CeEEEEeCCCCCcc
Confidence 444444444555 69999999998887
No 38
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=42.57 E-value=46 Score=35.52 Aligned_cols=48 Identities=10% Similarity=0.238 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCC----CHHHHHHHHHHHHHh
Q psy8282 499 QVILPIAYQFNPELVLVSAGYDACVNDPLGGCKV----SPEAYAHFTHWLKAL 547 (632)
Q Consensus 499 ~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~l----t~~~y~~~~~~l~~~ 547 (632)
+.|.+++++++||++|+ +|-|+...+.-....| .+.-|.+.++.+++.
T Consensus 143 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y 194 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVI-TGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKY 194 (283)
T ss_pred HHHHHHHHHhCCCEEEE-eCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhc
Confidence 36788999999998765 8999997654333222 333444555545444
No 39
>KOG0121|consensus
Probab=42.53 E-value=20 Score=34.35 Aligned_cols=45 Identities=29% Similarity=0.593 Sum_probs=33.4
Q ss_pred CCCCCCccccc-----chHHHHHHHHHHhCCCCeEEEEeccccCCcceee
Q psy8282 180 EQDEPCGFCIF-----NNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQA 224 (632)
Q Consensus 180 ~~~~~~GFC~~-----NnvAIAa~~l~~~~g~~rV~IvD~DvHHGnGTq~ 224 (632)
..-.++|||++ .++-.|.+|+-...--+|++-+|||.-.=+|-|.
T Consensus 73 ~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQy 122 (153)
T KOG0121|consen 73 FKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQY 122 (153)
T ss_pred CCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhhh
Confidence 46778999987 3566777777544445899999999876666663
No 40
>PRK13236 nitrogenase reductase; Reviewed
Probab=42.31 E-value=26 Score=37.13 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCCeeEEeeeccccCccchhcccc
Q psy8282 405 VSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYN 440 (632)
Q Consensus 405 vAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~ 440 (632)
+|+-+.+++.+.| +||++||.|.+.+| |.-+|..
T Consensus 22 ~a~NLA~~La~~G-~rVLliD~D~q~~~-~~~l~~~ 55 (296)
T PRK13236 22 TSQNTLAAMAEMG-QRILIVGCDPKADS-TRLMLHS 55 (296)
T ss_pred HHHHHHHHHHHCC-CcEEEEEccCCCCc-cchhccC
Confidence 4555555666655 69999999999888 6666543
No 41
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=41.94 E-value=21 Score=32.56 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=28.3
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCC
Q psy8282 477 FNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACV 523 (632)
Q Consensus 477 ~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~ 523 (632)
...|.-. .|.+-..++..+++.+.+ +...+||+|||+.|. |...
T Consensus 32 ~~~n~~~--~G~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~ 76 (179)
T PF13472_consen 32 EVYNLGV--SGATSSDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLN 76 (179)
T ss_dssp EEEEEE---TT-BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCT
T ss_pred EEEEEee--cCccHhHHHHHHHHHHhh-hccCCCCEEEEEcccccccc
Confidence 3456665 466666677777776555 579999999999996 5444
No 42
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=39.15 E-value=37 Score=30.72 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=25.9
Q ss_pred CCCceeecCceeEEecccchhhchhHHHHHHHhhhhhhcCCcce
Q psy8282 37 EHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVNPMSI 80 (632)
Q Consensus 37 ~H~~~~~~~~~svwCy~Cd~~v~~~~l~qL~~Iy~~L~v~~~~~ 80 (632)
+.++++.+ |+.||..|..+ +..|.++++.....++..
T Consensus 23 gk~vvl~F--~a~~C~~C~~~-----~p~l~~l~~~~~~~~~~v 59 (126)
T cd03012 23 GKVVLLDF--WTYCCINCLHT-----LPYLTDLEQKYKDDGLVV 59 (126)
T ss_pred CCEEEEEE--ECCCCccHHHH-----HHHHHHHHHHcCcCCeEE
Confidence 46889998 89999999755 445666666665554443
No 43
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=38.17 E-value=1.4e+02 Score=33.45 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHH
Q psy8282 495 AAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCT 573 (632)
Q Consensus 495 ~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~ 573 (632)
+.+++.|..+.++++|++|+|.++. ....+|- +..+.+.+.+-.+.|++.+--.||...+...++...+
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdD----------i~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~ 144 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDD----------VESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAF 144 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccC----------HHHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHH
Confidence 5666777778889999988777664 4444443 4455555554335689999999998855555555555
Q ss_pred HHHc
Q psy8282 574 KALL 577 (632)
Q Consensus 574 ~~Ll 577 (632)
++++
T Consensus 145 ~al~ 148 (426)
T cd01972 145 HGIL 148 (426)
T ss_pred HHHH
Confidence 4444
No 44
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=36.88 E-value=95 Score=33.34 Aligned_cols=27 Identities=15% Similarity=0.529 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCCCCCC
Q psy8282 499 QVILPIAYQFNPELVLVSAGYDACVNDP 526 (632)
Q Consensus 499 ~vl~p~l~~f~PdlIvvsAGfDa~~~Dp 526 (632)
+.|..++++++||++|+ +|-|+...+.
T Consensus 144 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~ 170 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVI-TGHDGYLKNK 170 (287)
T ss_pred HHHHHHHHHcCCCEEEE-eCchhhhcCC
Confidence 36778899999998765 8999987765
No 45
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.15 E-value=1.5e+02 Score=27.94 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=16.2
Q ss_pred HHHHHHcCCCEEEEEcCC-CC
Q psy8282 502 LPIAYQFNPELVLVSAGY-DA 521 (632)
Q Consensus 502 ~p~l~~f~PdlIvvsAGf-Da 521 (632)
.+.+.+.+||+|+|+.|. |+
T Consensus 49 ~~~l~~~~pd~Vii~~G~ND~ 69 (189)
T cd01825 49 QAQLAALPPDLVILSYGTNEA 69 (189)
T ss_pred HHHHhhCCCCEEEEECCCccc
Confidence 346678999999999997 54
No 46
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=34.47 E-value=2e+02 Score=25.47 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=31.8
Q ss_pred HHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHH
Q psy8282 501 ILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISY 567 (632)
Q Consensus 501 l~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~ 567 (632)
+...+.+++||+|.+|+- +.-+.....++.+.+++... .+..++ ||...+...+
T Consensus 43 l~~~~~~~~pd~V~iS~~-----------~~~~~~~~~~l~~~~k~~~p-~~~iv~-GG~~~t~~~~ 96 (121)
T PF02310_consen 43 LVEALRAERPDVVGISVS-----------MTPNLPEAKRLARAIKERNP-NIPIVV-GGPHATADPE 96 (121)
T ss_dssp HHHHHHHTTCSEEEEEES-----------SSTHHHHHHHHHHHHHTTCT-TSEEEE-EESSSGHHHH
T ss_pred HHHHHhcCCCcEEEEEcc-----------CcCcHHHHHHHHHHHHhcCC-CCEEEE-ECCchhcChH
Confidence 445667899999999885 22344455677777666543 344444 4444443333
No 47
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=33.28 E-value=55 Score=33.79 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCCeEEEEeccccCCccee
Q psy8282 196 AAKYALDNHGLSRVLILDWDVHHGNGTQ 223 (632)
Q Consensus 196 Aa~~l~~~~g~~rV~IvD~DvHHGnGTq 223 (632)
-+.+++.+.| +||++||+|.. ||.|.
T Consensus 19 nLA~~La~~G-~~VlliD~D~q-~~~~~ 44 (275)
T TIGR01287 19 NIAAALAEMG-KKVMIVGCDPK-ADSTR 44 (275)
T ss_pred HHHHHHHHCC-CeEEEEeCCCC-CCccc
Confidence 3334444555 79999999997 44454
No 48
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=32.84 E-value=1.4e+02 Score=28.32 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=18.2
Q ss_pred HcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHH
Q psy8282 507 QFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAH 539 (632)
Q Consensus 507 ~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~ 539 (632)
.++||+|||..|. |+.. -..+++.|.+
T Consensus 65 ~~~~d~vii~~G~ND~~~------~~~~~~~~~~ 92 (185)
T cd01832 65 ALRPDLVTLLAGGNDILR------PGTDPDTYRA 92 (185)
T ss_pred hcCCCEEEEecccccccc------CCCCHHHHHH
Confidence 4799999999997 5533 1355555543
No 49
>PRK10818 cell division inhibitor MinD; Provisional
Probab=32.38 E-value=50 Score=33.91 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCCeEEEEeccccCCcc
Q psy8282 194 SVAAKYALDNHGLSRVLILDWDVHHGNG 221 (632)
Q Consensus 194 AIAa~~l~~~~g~~rV~IvD~DvHHGnG 221 (632)
|+.+.+++.+.| +||++||+|.+.||-
T Consensus 20 a~nlA~~la~~g-~~vllvD~D~~~~~~ 46 (270)
T PRK10818 20 SAAIATGLAQKG-KKTVVIDFDIGLRNL 46 (270)
T ss_pred HHHHHHHHHHCC-CeEEEEECCCCCCCh
Confidence 333334333445 799999999987763
No 50
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=32.15 E-value=1.9e+02 Score=31.72 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHH
Q psy8282 495 AAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCT 573 (632)
Q Consensus 495 ~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~ 573 (632)
..+++.|..+.++++|++|+|..+. ....+|. +..+.+.+.+-.+.|++.+--.||...+...++...+
T Consensus 73 ~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a~ 142 (406)
T cd01967 73 KKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDD----------IEAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIAN 142 (406)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHHH
Confidence 4566667777889999977766554 5555553 4555555544335689999999998744455554444
Q ss_pred HHH
Q psy8282 574 KAL 576 (632)
Q Consensus 574 ~~L 576 (632)
+++
T Consensus 143 ~al 145 (406)
T cd01967 143 DAI 145 (406)
T ss_pred HHH
Confidence 443
No 51
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=31.89 E-value=55 Score=33.79 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCCeeEEeeeccccCccchh
Q psy8282 406 SVAAKYALDNHGLSRVLILDWDVHHGNGTQA 436 (632)
Q Consensus 406 AIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~ 436 (632)
++-+.+++.+.| +||++||+|.. ||.|..
T Consensus 17 a~nLA~~La~~G-~~VlliD~D~q-~~~~~~ 45 (275)
T TIGR01287 17 TQNIAAALAEMG-KKVMIVGCDPK-ADSTRL 45 (275)
T ss_pred HHHHHHHHHHCC-CeEEEEeCCCC-CCcccc
Confidence 333344444555 69999999988 444543
No 52
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=31.78 E-value=3e+02 Score=29.11 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEeCCCCCcch
Q psy8282 493 YIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA--QGRIILALEGGYNISS 564 (632)
Q Consensus 493 Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~l~~~a--~grvv~vLEGGY~~~~ 564 (632)
|.+.|++. +|-+.+|+-..++|-.|-.+...| ....+.+.+..+. +.++++|.+||.....
T Consensus 2 ~~~~~~~~-~~yi~~~~~~~~VIKlGG~ai~~~----------~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~ 64 (280)
T cd04237 2 FVDWFREA-APYINAHRGKTFVIAFGGEAVAHP----------NFDNIVHDIALLHSLGIRLVLVHGARPQIDQ 64 (280)
T ss_pred hHHHHHHH-hHHHHHhCCCEEEEEEChHHhcCc----------hHHHHHHHHHHHHHCCCcEEEEeCCCHHHHH
Confidence 66778776 688899999999999986666543 2233444444332 4589999999887654
No 53
>PRK10818 cell division inhibitor MinD; Provisional
Probab=30.92 E-value=51 Score=33.79 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCCeeEEeeeccccCccch
Q psy8282 406 SVAAKYALDNHGLSRVLILDWDVHHGNGTQ 435 (632)
Q Consensus 406 AIAa~~~~~~~g~~RVlIiD~DvHHGnGTq 435 (632)
|+...+++.+.| +||++||+|.+.+|-+.
T Consensus 20 a~nlA~~la~~g-~~vllvD~D~~~~~~~~ 48 (270)
T PRK10818 20 SAAIATGLAQKG-KKTVVIDFDIGLRNLDL 48 (270)
T ss_pred HHHHHHHHHHCC-CeEEEEECCCCCCChhh
Confidence 344444444445 79999999998887443
No 54
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=29.56 E-value=55 Score=33.96 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCCeEEEEeccccCCcceeec
Q psy8282 195 VAAKYALDNHGLSRVLILDWDVHHGNGTQAM 225 (632)
Q Consensus 195 IAa~~l~~~~g~~rV~IvD~DvHHGnGTq~i 225 (632)
+.+.+++.+.| +||++||+|. |||=|+..
T Consensus 19 ~nLA~~La~~G-~rVLliD~Dp-q~n~t~~l 47 (279)
T PRK13230 19 CNIAAALAESG-KKVLVVGCDP-KADCTRNL 47 (279)
T ss_pred HHHHHHHHhCC-CEEEEEeeCC-cccccccc
Confidence 33334444555 6999999999 56666654
No 55
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=29.46 E-value=52 Score=34.04 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=16.8
Q ss_pred HHHHhCCCCeEEEEeccccCCcceeec
Q psy8282 199 YALDNHGLSRVLILDWDVHHGNGTQAM 225 (632)
Q Consensus 199 ~l~~~~g~~rV~IvD~DvHHGnGTq~i 225 (632)
+++.+.| +||++||+|.+..+ |.-+
T Consensus 23 ~~La~~G-~rVllvD~Dpq~~~-~~~l 47 (273)
T PRK13232 23 AALSTMG-NKILLVGCDPKADS-TRML 47 (273)
T ss_pred HHHHhhC-CCeEEEeccccccc-chhh
Confidence 3333444 69999999998665 4433
No 56
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=29.46 E-value=1.7e+02 Score=32.02 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHH----HH
Q psy8282 495 AAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISY----AM 569 (632)
Q Consensus 495 ~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~----~~ 569 (632)
+.+++.|..+.++++|++|+|.... ....+|. +..+.+.+.+-.+.|++.+--.||.. +... ++
T Consensus 60 ~kL~~~i~~~~~~~~P~~i~v~~sC~~~iIGdD----------~~~v~~~~~~~~~~~vi~v~~~gf~~-~~~~G~~~a~ 128 (398)
T PF00148_consen 60 EKLREAIKEIAEKYKPKAIFVVTSCVPEIIGDD----------IEAVARELQEEYGIPVIPVHTPGFSG-SYSQGYDAAL 128 (398)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEEE-HHHHHTTTT----------HHHHHHHHHHHHSSEEEEEE--TTSS-SHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCCCcEEEEECCCCHHHhCCC----------HHHHHHHhhcccCCcEEEEECCCccC-CccchHHHHH
Confidence 3455666777889999988776553 4444442 56777777765566899999999943 3344 44
Q ss_pred HHHHHHHcC
Q psy8282 570 TLCTKALLG 578 (632)
Q Consensus 570 ~~~~~~Llg 578 (632)
.++++.++.
T Consensus 129 ~~l~~~~~~ 137 (398)
T PF00148_consen 129 RALAEQLVK 137 (398)
T ss_dssp HHHHHHHTT
T ss_pred HHHHhhccc
Confidence 445555544
No 57
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=29.44 E-value=4.4e+02 Score=31.28 Aligned_cols=149 Identities=18% Similarity=0.290 Sum_probs=89.5
Q ss_pred eeEeeCCCCCCCCCC----CCCCccccc--hHHHHHHHHHHhcCCCeeEEeeeccccCccchhccccCCCeEEEeeccCC
Q psy8282 380 GVAIIRPPGHHAEQD----EPCGFCIFN--NVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYD 453 (632)
Q Consensus 380 afalvRPpGHHA~~~----~a~GFC~fN--nvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~ 453 (632)
+|-+. ||+--|... ...++|-++ +-+=+|...+ ..|+ =+.||+|.|-=|++..+|...|-=.-+|.=+
T Consensus 294 ay~~g-~~~~dal~~rI~a~~~~~~~~~~~dd~e~a~~I~-~d~I--dILvDl~g~T~d~r~~v~A~RpAPiqvswlG-- 367 (620)
T COG3914 294 AYSLG-PPHTDALQERISAAVEKWYPIGRMDDAEIANAIR-TDGI--DILVDLDGHTVDTRCQVFAHRPAPIQVSWLG-- 367 (620)
T ss_pred EEecC-CCCchhHHHHHHHhhhheeccCCcCHHHHHHHHH-hcCC--eEEEeccCceeccchhhhhcCCCceEEeecc--
Confidence 34444 676545433 356888888 3333333332 2233 2568999999999999999999888888543
Q ss_pred CCCCCCCCCC-CCCC-CcCCCCCCccEEEecCCCCCCChHHHHHHHHHHHHHHHHHcC--------------------CC
Q psy8282 454 HGSFFPHSKD-AGPH-NVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFN--------------------PE 511 (632)
Q Consensus 454 ~g~~yPgt~~-g~~~-~~G~g~g~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~--------------------Pd 511 (632)
||+|.. ...+ -++. ..-+| | +-..-|-+.+-+ +| .-|+ +|
T Consensus 368 ----y~aT~g~p~~DY~I~D------~y~vP-p---~ae~yysEkl~R--Lp--~cy~p~d~~~~v~p~~sR~~lglp~~ 429 (620)
T COG3914 368 ----YPATTGSPNMDYFISD------PYTVP-P---TAEEYYSEKLWR--LP--QCYQPVDGFEPVTPPPSRAQLGLPED 429 (620)
T ss_pred ----cccccCCCcceEEeeC------ceecC-c---hHHHHHHHHHHh--cc--cccCCCCCcccCCCCcchhhcCCCCC
Confidence 666632 1111 1111 12333 1 223334444433 12 2222 25
Q ss_pred EEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCC
Q psy8282 512 LVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYN 561 (632)
Q Consensus 512 lIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~ 561 (632)
.+|+.|| -+..+.|++-+..-.+.|+.. .+.+++++.||=+
T Consensus 430 avVf~c~--------~n~~K~~pev~~~wmqIL~~v-P~Svl~L~~~~~~ 470 (620)
T COG3914 430 AVVFCCF--------NNYFKITPEVFALWMQILSAV-PNSVLLLKAGGDD 470 (620)
T ss_pred eEEEEec--------CCcccCCHHHHHHHHHHHHhC-CCcEEEEecCCCc
Confidence 6666666 467889999999999988877 4578889999943
No 58
>CHL00175 minD septum-site determining protein; Validated
Probab=29.24 E-value=60 Score=33.64 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=17.7
Q ss_pred HHHHHhCCCCeEEEEeccccCCccee
Q psy8282 198 KYALDNHGLSRVLILDWDVHHGNGTQ 223 (632)
Q Consensus 198 ~~l~~~~g~~rV~IvD~DvHHGnGTq 223 (632)
.+++.+.| +||++||.|...||-+.
T Consensus 37 A~~La~~g-~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 37 GMSIARLG-YRVALIDADIGLRNLDL 61 (281)
T ss_pred HHHHHhCC-CeEEEEeCCCCCCChhh
Confidence 33344455 69999999999887543
No 59
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=28.85 E-value=75 Score=31.42 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=23.3
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CC
Q psy8282 478 NVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DA 521 (632)
Q Consensus 478 ~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da 521 (632)
.+|.-.+ |.+-...+..++. ..+..++||+|+|..|. |.
T Consensus 63 v~N~Gi~--G~tt~~~l~r~~~---~~l~~~~pd~VvI~~G~ND~ 102 (214)
T cd01820 63 ALNFGIG--GDRTQNVLWRLEN---GELDGVNPKVVVLLIGTNNI 102 (214)
T ss_pred eEeeeec--cccHhHHHHHHhc---CCccCCCCCEEEEEeccccc
Confidence 4566552 4443444444432 22446799999999998 54
No 60
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=28.83 E-value=67 Score=30.18 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=16.4
Q ss_pred HHHhCCCCeEEEEeccccCCccee
Q psy8282 200 ALDNHGLSRVLILDWDVHHGNGTQ 223 (632)
Q Consensus 200 l~~~~g~~rV~IvD~DvHHGnGTq 223 (632)
++.+.| .||++||.|...||-+.
T Consensus 23 ~l~~~g-~~vllvD~D~~~~~~~~ 45 (179)
T cd02036 23 ALAQLG-YKVVLIDADLGLRNLDL 45 (179)
T ss_pred HHHhCC-CeEEEEeCCCCCCCchh
Confidence 333444 69999999998776544
No 61
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=27.57 E-value=2.4e+02 Score=31.51 Aligned_cols=72 Identities=10% Similarity=0.116 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHHh----cCCcEEEEeCCCCCcchHHHHH
Q psy8282 495 AAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKAL----AQGRIILALEGGYNISSISYAM 569 (632)
Q Consensus 495 ~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~~----a~grvv~vLEGGY~~~~la~~~ 569 (632)
+.+++.|..+.++++|++|+|.++. =...+|- ...+.+.+.+- .+.|++.+--.||..+ ...++
T Consensus 67 ~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdD----------i~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~-~~~G~ 135 (417)
T cd01966 67 ENLEEALDTLAERAKPKVIGLLSTGLTETRGED----------IAGALKQFRAEHPELADVPVVYVSTPDFEGS-LEDGW 135 (417)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcccccccC----------HHHHHHHHHhhccccCCCeEEEecCCCCCCc-HHHHH
Confidence 3455566667788999988877664 2223332 34444444433 3568999999999864 45555
Q ss_pred HHHHHHHc
Q psy8282 570 TLCTKALL 577 (632)
Q Consensus 570 ~~~~~~Ll 577 (632)
...+++++
T Consensus 136 ~~a~~al~ 143 (417)
T cd01966 136 AAAVEAII 143 (417)
T ss_pred HHHHHHHH
Confidence 55444443
No 62
>CHL00175 minD septum-site determining protein; Validated
Probab=27.48 E-value=65 Score=33.35 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCCeeEEeeeccccCccch
Q psy8282 406 SVAAKYALDNHGLSRVLILDWDVHHGNGTQ 435 (632)
Q Consensus 406 AIAa~~~~~~~g~~RVlIiD~DvHHGnGTq 435 (632)
|.-+.+++.+.| +||++||.|..+||-+.
T Consensus 33 a~nLA~~La~~g-~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 33 TANLGMSIARLG-YRVALIDADIGLRNLDL 61 (281)
T ss_pred HHHHHHHHHhCC-CeEEEEeCCCCCCChhh
Confidence 333334444555 69999999999988554
No 63
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=27.33 E-value=2.3e+02 Score=32.14 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHHh----cCCcEEEEeCCCCCcchHHHHH
Q psy8282 495 AAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKAL----AQGRIILALEGGYNISSISYAM 569 (632)
Q Consensus 495 ~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~~----a~grvv~vLEGGY~~~~la~~~ 569 (632)
+.+++.|..+.++++|++|+|.++. ....+|- +..+.+.+..- .+.|++.+--.||.. +...++
T Consensus 78 ~~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDD----------i~~v~~~~~~~~p~~~~~pvi~v~tpgF~g-~~~~G~ 146 (455)
T PRK14476 78 ENVEEAILNICKKAKPKIIGLCTTGLTETRGDD----------VAGALKEIRARHPELADTPIVYVSTPDFKG-ALEDGW 146 (455)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCcchHhhhhcc----------HHHHHHHHHhhccccCCCeEEEecCCCCCC-cHHHHH
Confidence 3455566677788999988766554 6666664 34444444433 245899999999976 345555
Q ss_pred HHHHHHHc
Q psy8282 570 TLCTKALL 577 (632)
Q Consensus 570 ~~~~~~Ll 577 (632)
...+++++
T Consensus 147 ~~a~~al~ 154 (455)
T PRK14476 147 AAAVEAIV 154 (455)
T ss_pred HHHHHHHH
Confidence 55544443
No 64
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=27.11 E-value=59 Score=33.61 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=18.5
Q ss_pred HHHHHHhcCCCeeEEeeeccccCccchhcc
Q psy8282 409 AKYALDNHGLSRVLILDWDVHHGNGTQAMF 438 (632)
Q Consensus 409 a~~~~~~~g~~RVlIiD~DvHHGnGTq~iF 438 (632)
+.+++.+.| +||++||.|.+..+ |.-++
T Consensus 21 LA~~La~~G-~rVllvD~Dpq~~~-~~~l~ 48 (273)
T PRK13232 21 LTAALSTMG-NKILLVGCDPKADS-TRMLL 48 (273)
T ss_pred HHHHHHhhC-CCeEEEeccccccc-chhhc
Confidence 333444444 69999999999765 55443
No 65
>PHA02518 ParA-like protein; Provisional
Probab=26.79 E-value=65 Score=31.29 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCCeEEEEeccccCCccee
Q psy8282 195 VAAKYALDNHGLSRVLILDWDVHHGNGTQ 223 (632)
Q Consensus 195 IAa~~l~~~~g~~rV~IvD~DvHHGnGTq 223 (632)
+.+.+++.+.| +||++||+|. |++-+.
T Consensus 19 ~~la~~la~~g-~~vlliD~D~-q~~~~~ 45 (211)
T PHA02518 19 TNLASWLHADG-HKVLLVDLDP-QGSSTD 45 (211)
T ss_pred HHHHHHHHhCC-CeEEEEeCCC-CCChHH
Confidence 33333344444 7999999995 555443
No 66
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=26.39 E-value=2.9e+02 Score=31.07 Aligned_cols=71 Identities=6% Similarity=0.076 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHHh----cCCcEEEEeCCCCCcchHHHHH
Q psy8282 495 AAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKAL----AQGRIILALEGGYNISSISYAM 569 (632)
Q Consensus 495 ~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~~----a~grvv~vLEGGY~~~~la~~~ 569 (632)
+.+++.|..+.++++|++|+|.++. ....+|- +..+.+.+.+- .+.|++.+-..||.. +...++
T Consensus 77 ~~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDD----------i~~v~~~~~~e~p~~~~~pvi~v~tpgf~g-~~~~G~ 145 (432)
T TIGR01285 77 EHIEEAIDTLCQRNKPKAIGLLSTGLTETRGED----------IARVVRQFREKHPQHKGTAVVTVNTPDFKG-SLEDGY 145 (432)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccccccC----------HHHHHHHHHhhcccccCCeEEEecCCCcCC-chHHHH
Confidence 3455666777889999988776554 5556664 34444444432 245899999999986 345555
Q ss_pred HHHHHHH
Q psy8282 570 TLCTKAL 576 (632)
Q Consensus 570 ~~~~~~L 576 (632)
...++++
T Consensus 146 ~~a~~al 152 (432)
T TIGR01285 146 AAAVESI 152 (432)
T ss_pred HHHHHHH
Confidence 5544444
No 67
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=26.02 E-value=3.3e+02 Score=30.75 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHH
Q psy8282 496 AFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCT 573 (632)
Q Consensus 496 ~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~ 573 (632)
.+.+.|..+.++++|++|+|.+.. ....+|. +..+.+.+.+..+.|++.+--.||..+ ...++...+
T Consensus 108 kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdD----------i~~v~~e~~~~~~~~vi~v~t~gf~g~-~~~G~~~a~ 175 (456)
T TIGR01283 108 KLFHAIREIVERYHPPAVFVYSTCVPGLIGDD----------LEAVCKAAAEKTGIPVIPVDSEGFYGS-KNLGNKLAC 175 (456)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhcCC----------HHHHHHHHHHHhCCCEEEEECCCCccc-hhHHHHHHH
Confidence 455566667789999987665553 5555554 345555554433568999999998664 444444333
No 68
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.49 E-value=1.5e+02 Score=28.15 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=26.6
Q ss_pred HHHHHcCCCEEEEEcCCC-CCCCCCCCCcCCCHHHHHHHHHHHHHhcC-CcEEEE
Q psy8282 503 PIAYQFNPELVLVSAGYD-ACVNDPLGGCKVSPEAYAHFTHWLKALAQ-GRIILA 555 (632)
Q Consensus 503 p~l~~f~PdlIvvsAGfD-a~~~Dplg~~~lt~~~y~~~~~~l~~~a~-grvv~v 555 (632)
..+...+||+||+..|.. ...+ .-..+.+..+.+.+++... .+++++
T Consensus 51 ~~~~~~~pd~vii~~G~ND~~~~------~~~~~~~~~~i~~i~~~~p~~~iil~ 99 (177)
T cd01844 51 ELLRDVPADLYIIDCGPNIVGAE------AMVRERLGPLVKGLRETHPDTPILLV 99 (177)
T ss_pred HHHHhcCCCEEEEEeccCCCccH------HHHHHHHHHHHHHHHHHCcCCCEEEE
Confidence 344568999999999973 3211 1123445556666655432 345443
No 69
>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap). These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].
Probab=25.47 E-value=49 Score=33.46 Aligned_cols=93 Identities=17% Similarity=0.205 Sum_probs=58.3
Q ss_pred ccceeecccch-hhHHHhhcccCCCC--ceeecCceeEEecccchhhchhHHH---HHHHhhhhhhcCCcceeeecCCcc
Q psy8282 15 NFSLVRCGRYI-EEHSMLHGVSTEHP--LALSFADLSVWCYVCEAYVDNHLLA---LLIYLYGVMYVNPMSIIITEHPLA 88 (632)
Q Consensus 15 ~~~~v~CgR~~-~~Ha~~H~~~~~H~--~~~~~~~~svwCy~Cd~~v~~~~l~---qL~~Iy~~L~v~~~~~~~~~~~~~ 88 (632)
++.=+.||+.- .+==--||.+.++. +-++-.+.-.-|-.|+.+.+-...+ .|+.-++.-.|..+. ....|.+
T Consensus 87 ~~~CiSCG~~~~~~~dagHy~s~g~~~~lRF~~~N~~~qC~~CN~~~sgn~~~Yr~~Li~kiG~~~ve~Le--~~~~~~k 164 (189)
T PF05766_consen 87 GKPCISCGRKHGGQWDAGHYRSRGAAPELRFNEDNIHAQCKHCNRHLSGNIVEYRIGLIEKIGQERVEWLE--GPHEPRK 164 (189)
T ss_pred CCCcccCCCcCCCCcccccccccccCcccccChhhHhHcCCccccccccCHHHHHHHHHHHHhHHHHHHHh--cCCCCCC
Confidence 45668899921 22223477777644 4445555555699999998854444 555555555555544 3467788
Q ss_pred cChhhHHHHHhhhhcccCHHHHH
Q psy8282 89 LSFADLSVWCYVCEAYVDNHLLA 111 (632)
Q Consensus 89 ~~~~~l~~~~~~~~~~l~~~~~~ 111 (632)
.|.+||..+..+-...+ ++|+
T Consensus 165 ~~~~el~~i~~~y~~~~--k~L~ 185 (189)
T PF05766_consen 165 WTIEELKAIIAIYRAKL--KELK 185 (189)
T ss_pred CCHHHHHHHHHHHHHHH--HHHH
Confidence 89999998866655554 4443
No 70
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=25.26 E-value=81 Score=29.63 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=17.0
Q ss_pred HHHHhcCCCeeEEeeeccccCccch
Q psy8282 411 YALDNHGLSRVLILDWDVHHGNGTQ 435 (632)
Q Consensus 411 ~~~~~~g~~RVlIiD~DvHHGnGTq 435 (632)
+++.+.| +||++||.|...||-+.
T Consensus 22 ~~l~~~g-~~vllvD~D~~~~~~~~ 45 (179)
T cd02036 22 TALAQLG-YKVVLIDADLGLRNLDL 45 (179)
T ss_pred HHHHhCC-CeEEEEeCCCCCCCchh
Confidence 3333444 69999999998876544
No 71
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=24.91 E-value=76 Score=32.31 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=15.2
Q ss_pred hCCCCeEEEEeccccCCcceeec
Q psy8282 203 NHGLSRVLILDWDVHHGNGTQAM 225 (632)
Q Consensus 203 ~~g~~rV~IvD~DvHHGnGTq~i 225 (632)
+.| +||++||+|. |||-|...
T Consensus 27 ~~G-~kVlliD~Dp-q~n~~~~~ 47 (270)
T cd02040 27 EMG-KKVMIVGCDP-KADSTRLL 47 (270)
T ss_pred hCC-CeEEEEEcCC-CCCchhhh
Confidence 444 6999999999 57665543
No 72
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=24.67 E-value=3.5e+02 Score=26.24 Aligned_cols=64 Identities=23% Similarity=0.378 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEeCCCCCc
Q psy8282 490 DPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA--QGRIILALEGGYNI 562 (632)
Q Consensus 490 D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~l~~~a--~grvv~vLEGGY~~ 562 (632)
.++.+.+|++++ ..+.+.+||+|++ +| |.. .....+...+..+.+.+.++. +.+++++ -|.-+.
T Consensus 23 ~~~~~~~~~~~~-~~~~~~~~d~i~~-~G-D~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~GNHD~ 88 (223)
T cd00840 23 REDQFEAFEEIV-ELAIEEKVDFVLI-AG-DLF-----DSNNPSPEALELLIEALRRLKEAGIPVFII-AGNHDS 88 (223)
T ss_pred hHHHHHHHHHHH-HHHHhcCCCEEEE-CC-ccc-----CCCCCCHHHHHHHHHHHHHHHHCCCCEEEe-cCCCCC
Confidence 456778888864 5566789998666 44 443 222345666777777777774 4565544 565443
No 73
>PHA02518 ParA-like protein; Provisional
Probab=24.56 E-value=81 Score=30.64 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCCeeEEeeeccccCccch
Q psy8282 406 SVAAKYALDNHGLSRVLILDWDVHHGNGTQ 435 (632)
Q Consensus 406 AIAa~~~~~~~g~~RVlIiD~DvHHGnGTq 435 (632)
|+...+++.+.| +||++||+|. +++-+.
T Consensus 18 a~~la~~la~~g-~~vlliD~D~-q~~~~~ 45 (211)
T PHA02518 18 ATNLASWLHADG-HKVLLVDLDP-QGSSTD 45 (211)
T ss_pred HHHHHHHHHhCC-CeEEEEeCCC-CCChHH
Confidence 333334444445 6999999995 455544
No 74
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=23.90 E-value=81 Score=32.71 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCCeeEEeeeccccCccchhc
Q psy8282 406 SVAAKYALDNHGLSRVLILDWDVHHGNGTQAM 437 (632)
Q Consensus 406 AIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~i 437 (632)
|+.+.+++.+.| +||++||.|.. ||=|+.+
T Consensus 18 a~nLA~~La~~G-~rVLliD~Dpq-~n~t~~l 47 (279)
T PRK13230 18 VCNIAAALAESG-KKVLVVGCDPK-ADCTRNL 47 (279)
T ss_pred HHHHHHHHHhCC-CEEEEEeeCCc-ccccccc
Confidence 333344444555 59999999994 6666654
No 75
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=23.90 E-value=82 Score=32.31 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=12.9
Q ss_pred CeEEEEeccccCCccee
Q psy8282 207 SRVLILDWDVHHGNGTQ 223 (632)
Q Consensus 207 ~rV~IvD~DvHHGnGTq 223 (632)
+||++||+|. +||-|+
T Consensus 29 ~rVLliD~D~-q~~~~~ 44 (268)
T TIGR01281 29 KRVLQIGCDP-KHDSTF 44 (268)
T ss_pred CeEEEEecCc-cccccc
Confidence 6999999997 566665
No 76
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=23.21 E-value=1e+02 Score=31.35 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=16.4
Q ss_pred HHHhcCCCeeEEeeeccccCccchhc
Q psy8282 412 ALDNHGLSRVLILDWDVHHGNGTQAM 437 (632)
Q Consensus 412 ~~~~~g~~RVlIiD~DvHHGnGTq~i 437 (632)
++.+.| +||++||+|. +||-|...
T Consensus 24 ~La~~G-~kVlliD~Dp-q~n~~~~~ 47 (270)
T cd02040 24 ALAEMG-KKVMIVGCDP-KADSTRLL 47 (270)
T ss_pred HHHhCC-CeEEEEEcCC-CCCchhhh
Confidence 333444 6999999998 47666543
No 77
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=22.66 E-value=3.2e+02 Score=30.46 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHH
Q psy8282 495 AAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCT 573 (632)
Q Consensus 495 ~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~ 573 (632)
..+++.|..+.++|+|++|+|.+.. -...+| +...+.+.+.+-.+.+++.+---||.. +..+++...+
T Consensus 70 ~~L~~aI~~i~~~~~P~~I~V~tTC~se~IGD----------Di~~v~~~~~~~~~~pVi~v~tpgf~g-~~~~G~~~~~ 138 (407)
T TIGR01279 70 EELDRVVEQIKRDRNPSVIFLLSSCTPEVIKM----------DLEGLAERLSTNFGVPVLFAPASGLDY-TFTQGEDTVL 138 (407)
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCchHHHHHh----------hHHHHHHHHHHhhCCCEEEeeCCCccc-cHHHHHHHHH
Confidence 4566677778899999999887764 333343 234455544433356899998889965 3445555555
Q ss_pred HHHcC
Q psy8282 574 KALLG 578 (632)
Q Consensus 574 ~~Llg 578 (632)
+++++
T Consensus 139 ~alv~ 143 (407)
T TIGR01279 139 AALVP 143 (407)
T ss_pred HHHHH
Confidence 55554
No 78
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=21.84 E-value=1e+02 Score=30.99 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=12.2
Q ss_pred CeEEEEeccccCCc
Q psy8282 207 SRVLILDWDVHHGN 220 (632)
Q Consensus 207 ~rV~IvD~DvHHGn 220 (632)
.||++||.|...||
T Consensus 31 ~~vlliD~D~~~~~ 44 (261)
T TIGR01968 31 KKVVLIDADIGLRN 44 (261)
T ss_pred CeEEEEECCCCCCC
Confidence 69999999997665
No 79
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=21.76 E-value=90 Score=32.04 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=14.6
Q ss_pred hCCCCeEEEEeccccCCcceee
Q psy8282 203 NHGLSRVLILDWDVHHGNGTQA 224 (632)
Q Consensus 203 ~~g~~rV~IvD~DvHHGnGTq~ 224 (632)
+.| +||++||.|- |||=|+.
T Consensus 28 ~~G-~kVLliD~Dp-q~~~t~~ 47 (270)
T PRK13185 28 KLG-KKVLQIGCDP-KHDSTFT 47 (270)
T ss_pred HCC-CeEEEEeccC-Ccchhhh
Confidence 444 6999999997 5666643
No 80
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.44 E-value=4.5e+02 Score=29.11 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHH----H
Q psy8282 496 AFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAM----T 570 (632)
Q Consensus 496 ~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~----~ 570 (632)
.+.+.|..+.++++|++|+|.... ....+|- +..+.+.+.+-.+.|++.+--.||..+ ...++ .
T Consensus 73 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v~~~~~~~~~~~vi~v~t~gf~g~-~~~G~~~a~~ 141 (410)
T cd01968 73 KLYKAILEIIERYHPKAVFVYSTCVVALIGDD----------IDAVCKTASEKFGIPVIPVHSPGFVGN-KNLGNKLACE 141 (410)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHHHHHHHHhhCCCEEEEECCCcccC-hhHHHHHHHH
Confidence 455566677788999987665543 5555553 455665555433568999989998654 23333 3
Q ss_pred HHHHHHcC
Q psy8282 571 LCTKALLG 578 (632)
Q Consensus 571 ~~~~~Llg 578 (632)
++++.+.+
T Consensus 142 ~l~~~l~~ 149 (410)
T cd01968 142 ALLDHVIG 149 (410)
T ss_pred HHHHHhcC
Confidence 44444544
No 81
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=21.31 E-value=2.7e+02 Score=27.93 Aligned_cols=50 Identities=10% Similarity=0.341 Sum_probs=36.0
Q ss_pred HHHHHHHHHHH-cC-CCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEe
Q psy8282 497 FQQVILPIAYQ-FN-PELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILAL 556 (632)
Q Consensus 497 ~~~vl~p~l~~-f~-PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vL 556 (632)
++++..|.+++ ++ -|+|+| |..|-|.+....|.+..+.++.. +.|+++++
T Consensus 86 le~i~~~al~rA~~~aDvIII---------DEIGpMElks~~f~~~ve~vl~~-~kpliatl 137 (179)
T COG1618 86 LEEIAIPALRRALEEADVIII---------DEIGPMELKSKKFREAVEEVLKS-GKPLIATL 137 (179)
T ss_pred HHHHhHHHHHHHhhcCCEEEE---------ecccchhhccHHHHHHHHHHhcC-CCcEEEEE
Confidence 44455555543 22 488887 78999999999999998888875 44677664
No 82
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.19 E-value=4.5e+02 Score=29.49 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcC-CCCCCCCCCCCcCCCHHHHHHHHHHHHHhc----CCcEEEEeCCCCCcchHHHHH
Q psy8282 495 AAFQQVILPIAYQFNPELVLVSAG-YDACVNDPLGGCKVSPEAYAHFTHWLKALA----QGRIILALEGGYNISSISYAM 569 (632)
Q Consensus 495 ~~~~~vl~p~l~~f~PdlIvvsAG-fDa~~~Dplg~~~lt~~~y~~~~~~l~~~a----~grvv~vLEGGY~~~~la~~~ 569 (632)
+.+++.|..+.++++|++|+|.++ .....+|. +..+.+.+..-. +.+++.+--.||.. +...++
T Consensus 71 ~~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdD----------i~~v~~~~~~~~~~~~~~~vi~v~tpgf~g-s~~~G~ 139 (435)
T cd01974 71 NNLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDD----------LNAFIKNAKNKGSIPADFPVPFANTPSFVG-SHITGY 139 (435)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHhhhhcc----------HHHHHHHHHHhccCCCCCeEEEecCCCCcc-CHHHHH
Confidence 455666677788999998766555 35555553 444555444321 34788887788885 445565
Q ss_pred HHHHHHHc
Q psy8282 570 TLCTKALL 577 (632)
Q Consensus 570 ~~~~~~Ll 577 (632)
...+++++
T Consensus 140 ~~a~~al~ 147 (435)
T cd01974 140 DNMVKGIL 147 (435)
T ss_pred HHHHHHHH
Confidence 55555554
No 83
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=21.07 E-value=4.9e+02 Score=28.16 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHHHH
Q psy8282 497 FQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKA 575 (632)
Q Consensus 497 ~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~~~ 575 (632)
+.+.+..++++++|++|+|-.+. ....+|. +..+.+.+.+..+.|++.+-..||. .+...++...+++
T Consensus 68 l~~~i~~~~~~~~p~~i~v~~tc~~~liGdD----------i~~v~~~~~~~~~~~vv~~~~~gf~-~~~~~G~~~a~~~ 136 (399)
T cd00316 68 LLEAIINELKRYKPKVIFVYTTCTTELIGDD----------IEAVAKEASKEIGIPVVPASTPGFR-GSQSAGYDAAVKA 136 (399)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhhhhccC----------HHHHHHHHHHhhCCceEEeeCCCCc-ccHHHHHHHHHHH
Confidence 33344556688999988776664 4444442 5566666655456789999999999 4455555554444
Q ss_pred Hc
Q psy8282 576 LL 577 (632)
Q Consensus 576 Ll 577 (632)
+.
T Consensus 137 ~~ 138 (399)
T cd00316 137 II 138 (399)
T ss_pred HH
Confidence 43
No 84
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=20.68 E-value=1.3e+02 Score=29.78 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=15.4
Q ss_pred hCCCCeEEEEeccccCCcceeecc
Q psy8282 203 NHGLSRVLILDWDVHHGNGTQAMF 226 (632)
Q Consensus 203 ~~g~~rV~IvD~DvHHGnGTq~iF 226 (632)
+.| +||++||.|.. ||-|...+
T Consensus 26 ~~G-~rvLliD~D~q-~~~~~~~~ 47 (212)
T cd02117 26 EMG-KKVLQVGCDPK-ADSTRLLL 47 (212)
T ss_pred HCC-CcEEEEeCCCC-CCcccccc
Confidence 444 69999999964 66665444
No 85
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=20.58 E-value=4.9e+02 Score=28.99 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcC-CCCCCCCCCCCcCCCHHHHHHHHHHHHH----hcCCcEEEEeCCCCCcchHHHHHH
Q psy8282 496 AFQQVILPIAYQFNPELVLVSAG-YDACVNDPLGGCKVSPEAYAHFTHWLKA----LAQGRIILALEGGYNISSISYAMT 570 (632)
Q Consensus 496 ~~~~vl~p~l~~f~PdlIvvsAG-fDa~~~Dplg~~~lt~~~y~~~~~~l~~----~a~grvv~vLEGGY~~~~la~~~~ 570 (632)
.+++.|..+.++++|++|+|... .....+|. +..+.+.+.+ ..+.+++.+--.||..+ ...++.
T Consensus 68 ~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdD----------i~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~-~~~G~~ 136 (428)
T cd01965 68 NLIEALKNLLSRYKPDVIGVLTTCLTETIGDD----------VAGFIKEFRAEGPEPADFPVVYASTPSFKGS-HETGYD 136 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcchhhcCCC----------HHHHHHHHHhhccCCCCCeEEEeeCCCCCCc-HHHHHH
Confidence 45556667778899997665544 45556654 4555565554 23557888888999853 345555
Q ss_pred HHHHHHc
Q psy8282 571 LCTKALL 577 (632)
Q Consensus 571 ~~~~~Ll 577 (632)
..+++|+
T Consensus 137 ~a~~al~ 143 (428)
T cd01965 137 NAVKAII 143 (428)
T ss_pred HHHHHHH
Confidence 5554443
No 86
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.51 E-value=1e+02 Score=30.81 Aligned_cols=19 Identities=37% Similarity=0.365 Sum_probs=13.0
Q ss_pred HHHHHHhCCCCeEEEEeccc
Q psy8282 197 AKYALDNHGLSRVLILDWDV 216 (632)
Q Consensus 197 a~~l~~~~g~~rV~IvD~Dv 216 (632)
+.+++.+.| +||++||+|.
T Consensus 22 la~~la~~g-~~VlliD~D~ 40 (246)
T TIGR03371 22 LASALKLLG-EPVLAIDLDP 40 (246)
T ss_pred HHHHHHhCC-CcEEEEeCCC
Confidence 333333444 6999999998
No 87
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=20.45 E-value=68 Score=30.67 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=13.1
Q ss_pred CeeEEeeeccccCcc
Q psy8282 419 SRVLILDWDVHHGNG 433 (632)
Q Consensus 419 ~RVlIiD~DvHHGnG 433 (632)
+||++||.|.+.+|-
T Consensus 25 ~~vlliD~D~~~~~~ 39 (179)
T cd03110 25 KNVVLADCDVDAPNL 39 (179)
T ss_pred hCcEEEECCCCCCch
Confidence 699999999998763
No 88
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=20.11 E-value=3.6e+02 Score=30.17 Aligned_cols=72 Identities=13% Similarity=0.248 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcC-CCCCCCCCCCCcCCCHHHHHHHHHHHHHh---cCCcEEEEeCCCCCcchHHHHHH
Q psy8282 495 AAFQQVILPIAYQFNPELVLVSAG-YDACVNDPLGGCKVSPEAYAHFTHWLKAL---AQGRIILALEGGYNISSISYAMT 570 (632)
Q Consensus 495 ~~~~~vl~p~l~~f~PdlIvvsAG-fDa~~~Dplg~~~lt~~~y~~~~~~l~~~---a~grvv~vLEGGY~~~~la~~~~ 570 (632)
+.+++.|..+.++++|++|+|.++ .....+|. +..+.+.+.+- .+.|++.+--.||.. +...++.
T Consensus 70 ~kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdD----------i~~v~~~~~~~~~~~~~~vi~v~t~gF~g-~~~~G~~ 138 (429)
T cd03466 70 KNLKKGLKNVIEQYNPEVIGIATTCLSETIGED----------VPRIIREFREEVDDSEPKIIPASTPGYGG-THVEGYD 138 (429)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHHHhhcC----------HHHHHHHHhhcccCCCCcEEEEECCCCcc-cHHHHHH
Confidence 456666777888999997766554 45555553 34455554432 245788888888874 4445555
Q ss_pred HHHHHHc
Q psy8282 571 LCTKALL 577 (632)
Q Consensus 571 ~~~~~Ll 577 (632)
..+++++
T Consensus 139 ~a~~al~ 145 (429)
T cd03466 139 TAVRSIV 145 (429)
T ss_pred HHHHHHH
Confidence 5555554
Done!