Query psy8282
Match_columns 632
No_of_seqs 511 out of 3142
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:31:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pqp_A HD7A, histone deacetyla 100.0 4.7E-73 1.6E-77 610.5 24.0 247 366-614 164-418 (421)
2 2vqm_A HD4, histone deacetylas 100.0 1.6E-71 5.6E-76 602.0 24.9 256 366-623 135-398 (413)
3 1zz1_A Histone deacetylase-lik 100.0 7.5E-70 2.6E-74 581.3 20.1 272 332-610 65-366 (369)
4 3q9b_A Acetylpolyamine amidohy 100.0 1.5E-65 5.3E-70 541.4 19.6 215 356-578 116-341 (341)
5 3men_A Acetylpolyamine aminohy 100.0 5.6E-65 1.9E-69 540.1 19.7 214 356-578 135-359 (362)
6 3ew8_A HD8, histone deacetylas 100.0 4.5E-64 1.5E-68 537.3 21.5 244 330-582 58-328 (388)
7 4a69_A Histone deacetylase 3,; 100.0 6.2E-64 2.1E-68 535.8 21.8 242 332-582 51-320 (376)
8 1c3p_A Protein (HDLP (histone 100.0 4.6E-64 1.6E-68 537.7 18.9 241 332-583 50-320 (375)
9 3max_A HD2, histone deacetylas 100.0 6.4E-63 2.2E-67 525.9 23.9 241 332-582 51-319 (367)
10 1zz1_A Histone deacetylase-lik 100.0 3.2E-52 1.1E-56 445.3 18.6 229 59-315 36-274 (369)
11 2pqp_A HD7A, histone deacetyla 100.0 1E-50 3.5E-55 437.0 17.1 252 46-314 38-324 (421)
12 3q9b_A Acetylpolyamine amidohy 100.0 1.5E-49 5.2E-54 419.5 15.5 223 64-316 31-291 (341)
13 3men_A Acetylpolyamine aminohy 100.0 7.8E-49 2.7E-53 416.5 16.5 223 61-315 49-308 (362)
14 2vqm_A HD4, histone deacetylas 100.0 2.7E-49 9.1E-54 428.4 12.7 239 59-314 31-295 (413)
15 3ew8_A HD8, histone deacetylas 100.0 3.1E-48 1.1E-52 415.1 16.6 223 65-314 37-272 (388)
16 4a69_A Histone deacetylase 3,; 100.0 5.1E-48 1.8E-52 413.0 15.5 225 61-315 24-265 (376)
17 1c3p_A Protein (HDLP (histone 100.0 7.9E-48 2.7E-52 412.2 15.0 220 64-315 26-264 (375)
18 3max_A HD2, histone deacetylas 100.0 1.1E-47 3.9E-52 408.8 15.8 224 63-314 26-263 (367)
19 2i50_A Ubiquitin carboxyl-term 99.3 4.7E-13 1.6E-17 123.1 2.3 58 16-73 60-121 (126)
20 3c5k_A HD6, histone deacetylas 99.3 1.2E-12 4.2E-17 117.5 3.0 51 16-66 42-92 (109)
21 2uzg_A Ubiquitin carboxyl-term 99.2 5E-12 1.7E-16 111.3 2.6 43 16-58 46-88 (97)
22 2ida_A Hypothetical protein; z 99.2 1.4E-12 4.9E-17 115.6 -1.4 54 16-69 40-98 (102)
23 2g45_A Ubiquitin carboxyl-term 99.1 1.6E-11 5.6E-16 113.2 2.5 56 16-71 52-118 (129)
24 3ihp_A Ubiquitin carboxyl-term 98.3 2E-07 7E-12 109.4 2.8 53 16-68 233-296 (854)
25 3mhs_A Ubiquitin carboxyl-term 98.1 7.3E-07 2.5E-11 97.1 2.3 45 17-63 69-113 (476)
26 4hf7_A Putative acylhydrolase; 53.2 14 0.00047 34.7 4.8 71 478-555 53-124 (209)
27 3p94_A GDSL-like lipase; serin 49.4 17 0.00057 33.1 4.7 67 478-555 49-120 (204)
28 4h08_A Putative hydrolase; GDS 47.7 79 0.0027 28.7 9.1 57 479-548 49-109 (200)
29 1ivn_A Thioesterase I; hydrola 44.7 1.2E+02 0.004 27.2 9.7 64 478-555 37-105 (190)
30 3hp4_A GDSL-esterase; psychrot 40.5 63 0.0021 28.8 7.0 64 478-555 41-109 (185)
31 2vpt_A Lipolytic enzyme; ester 37.6 49 0.0017 30.7 6.0 59 487-554 65-125 (215)
32 3dff_A Teicoplanin pseudoaglyc 32.3 46 0.0016 33.4 5.1 35 491-525 130-164 (273)
33 3dfi_A Pseudoaglycone deacetyl 31.2 52 0.0018 33.0 5.2 36 490-525 126-161 (270)
34 3mil_A Isoamyl acetate-hydroly 30.9 1.9E+02 0.0065 26.5 8.9 70 477-556 45-120 (240)
35 1yzf_A Lipase/acylhydrolase; s 28.9 1.9E+02 0.0066 25.3 8.3 67 478-555 42-110 (195)
36 1g3q_A MIND ATPase, cell divis 28.4 44 0.0015 31.5 4.0 19 203-222 29-47 (237)
37 3kjh_A CO dehydrogenase/acetyl 28.3 37 0.0013 31.9 3.4 25 194-220 17-41 (254)
38 1hyq_A MIND, cell division inh 28.2 44 0.0015 32.1 4.0 22 200-222 26-47 (263)
39 3q9l_A Septum site-determining 27.8 45 0.0015 31.8 4.0 15 207-221 32-46 (260)
40 1cp2_A CP2, nitrogenase iron p 27.0 43 0.0015 32.4 3.7 26 200-227 24-49 (269)
41 3kjh_A CO dehydrogenase/acetyl 26.8 38 0.0013 31.8 3.2 26 406-433 17-42 (254)
42 3bzw_A Putative lipase; protei 26.8 1.6E+02 0.0056 28.3 8.0 48 478-529 61-109 (274)
43 1cp2_A CP2, nitrogenase iron p 26.0 54 0.0018 31.6 4.2 28 410-439 22-49 (269)
44 1g3q_A MIND ATPase, cell divis 24.9 52 0.0018 30.9 3.8 28 406-434 20-47 (237)
45 3ea0_A ATPase, para family; al 24.6 60 0.0021 30.6 4.2 30 194-223 22-51 (245)
46 1hyq_A MIND, cell division inh 24.0 55 0.0019 31.4 3.8 28 406-434 20-47 (263)
47 3q9l_A Septum site-determining 23.9 56 0.0019 31.1 3.8 28 407-435 21-48 (260)
48 2afh_E Nitrogenase iron protei 23.5 65 0.0022 31.6 4.3 26 412-439 25-50 (289)
49 2afh_E Nitrogenase iron protei 23.4 53 0.0018 32.3 3.6 20 207-227 31-50 (289)
50 1vjg_A Putative lipase from th 23.2 42 0.0014 31.0 2.7 71 478-555 59-135 (218)
51 3pg5_A Uncharacterized protein 22.7 54 0.0019 33.9 3.7 25 413-439 26-50 (361)
52 1es9_A PAF-AH, platelet-activa 22.5 1.3E+02 0.0044 28.1 6.0 64 478-555 67-136 (232)
53 2xj4_A MIPZ; replication, cell 22.5 56 0.0019 32.3 3.6 22 200-222 28-49 (286)
54 3rjt_A Lipolytic protein G-D-S 21.7 41 0.0014 30.5 2.2 56 478-539 58-117 (216)
55 3dci_A Arylesterase; SGNH_hydr 21.3 2.4E+02 0.0081 26.3 7.7 39 504-547 95-139 (232)
56 3pg5_A Uncharacterized protein 20.6 52 0.0018 34.0 3.0 19 207-226 31-49 (361)
No 1
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=4.7e-73 Score=610.46 Aligned_cols=247 Identities=47% Similarity=0.857 Sum_probs=233.5
Q ss_pred HHHHHHHHcCCCcceeEeeCCCCCCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEeeeccccCccchhccccCCCeE
Q psy8282 366 NKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVL 445 (632)
Q Consensus 366 ~~av~~v~~g~~~~afalvRPpGHHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~dp~Vl 445 (632)
++|+++|++|+++++||++|||||||++++++|||+|||+||||++++++++++||+|||||||||||||+|||+||+|+
T Consensus 164 ~~a~~~v~~g~~~~afa~~rPpGHHA~~~~a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~Vl 243 (421)
T 2pqp_A 164 TDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVL 243 (421)
T ss_dssp HHHHHHHHTTSSSEEEECCSSCCTTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEE
T ss_pred HHHHHHHHcCccccceeeCCCCCCCCCCCCCCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCcCCCCCCccEEEecCCC---CCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Q psy8282 446 YISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNK---KGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDAC 522 (632)
Q Consensus 446 ~iSiH~~~~g~~yPgt~~g~~~~~G~g~g~g~~vNvPl~~---~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~ 522 (632)
|+|+|++++|.|||+| |..+++|.+.|+|+++|||||. ++++|++|+.+|+++|+|++++|+||+||||||||+|
T Consensus 244 ~~S~H~~~~g~~yPgt--G~~~e~G~g~g~g~~vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~ 321 (421)
T 2pqp_A 244 YISLHRHDDGNFFPGS--GAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAA 321 (421)
T ss_dssp EEEEEECGGGTSTTCC--CCTTCCCCGGGTTCEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTB
T ss_pred EEecccCCCCCCCCCC--CChhhccCCCCccceeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccc
Confidence 9999999877899998 6688999999999999999962 4689999999999999999999999999999999999
Q ss_pred CCC--CCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHHHHHcCCCCCCCC---ccccCChhHHHH
Q psy8282 523 VND--PLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLE---SDLDINSSAVTS 597 (632)
Q Consensus 523 ~~D--plg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~~~Llg~~~~~~~---~~~~~~~~~~~~ 597 (632)
.+| |||+|+||+++|.++++.|++++++|++++|||||+++++++++.+++++|+|++.+++. ....|+.++.++
T Consensus 322 ~gD~dpLg~~~lt~~~y~~~~~~l~~~a~grvv~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~l~~~~~~~~p~~~a~~~ 401 (421)
T 2pqp_A 322 EGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRS 401 (421)
T ss_dssp TTCCGGGCCCBBCHHHHHHHHHHHTTSGGGCEEEEECSCCCHHHHHHHHHHHHHHHTTCCCCGGGCGGGGSCCCHHHHHH
T ss_pred cccccccCCceeCHHHHHHHHHHHHHHcCCCEEEEECCCCChHHHHHHHHHHHHHHcCCCCCCCcccccccccCHHHHHH
Confidence 987 999999999999999999999999999999999999999999999999999998765432 234678899999
Q ss_pred HHHHHHHHhhccccccc
Q psy8282 598 IKETISSHKAYWSSLKF 614 (632)
Q Consensus 598 i~~vi~~~~~~W~~~~~ 614 (632)
|++|++.|++||++++.
T Consensus 402 i~~v~~~~~~yW~~l~~ 418 (421)
T 2pqp_A 402 LEAVIRVHSKYWGCMQR 418 (421)
T ss_dssp HHHHHHHHTTTCGGGCC
T ss_pred HHHHHHHHHHHhHHHHh
Confidence 99999999999999985
No 2
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=1.6e-71 Score=602.01 Aligned_cols=256 Identities=48% Similarity=0.861 Sum_probs=238.7
Q ss_pred HHHHHHHHcCCCcceeEeeCCCCCCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEeeeccccCccchhccccCCCeE
Q psy8282 366 NKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVL 445 (632)
Q Consensus 366 ~~av~~v~~g~~~~afalvRPpGHHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~dp~Vl 445 (632)
++|+++|++|+.+++||++|||||||++++++|||+|||+||||++++++++++||+|||||||||||||+|||+||+|+
T Consensus 135 l~a~~~v~~g~~~~afa~vrppGHHA~~~~a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl 214 (413)
T 2vqm_A 135 VELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVL 214 (413)
T ss_dssp HHHHHHHHTTSSSEEEECCCSCCTTCBTTBCBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEE
T ss_pred HHHHHHHhcCCccceeeecccccccCcCCCCCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCcCCCCCCccEEEecCCC---CCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Q psy8282 446 YISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNK---KGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDAC 522 (632)
Q Consensus 446 ~iSiH~~~~g~~yPgt~~g~~~~~G~g~g~g~~vNvPl~~---~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~ 522 (632)
|+|+|+++++.|||+| |..+++|.++|+|+++|+||+. ++++|++|+.+|+++|+|++++|+||+||||||||+|
T Consensus 215 ~~S~H~~~~~~f~pgt--G~~~e~G~g~g~g~~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~ 292 (413)
T 2vqm_A 215 YMSLHRYDDGNFFPGS--GAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAV 292 (413)
T ss_dssp EEEEEECGGGCSTTCC--CCTTCCCSGGGTTCEEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTB
T ss_pred cccchhccCCCCCCCC--CCHHHcCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhc
Confidence 9999999888899998 6788999999999999999862 4689999999999999999999999999999999999
Q ss_pred CC--CCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHHHHHcCCCCCCCCc---cccCChhHHHH
Q psy8282 523 VN--DPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLES---DLDINSSAVTS 597 (632)
Q Consensus 523 ~~--Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~~~Llg~~~~~~~~---~~~~~~~~~~~ 597 (632)
.+ ||||+|+||+++|.+++++|+++|++|++++|||||+++++++||.+++++|+|.++++++. ...|+..+.++
T Consensus 293 ~~d~D~lg~~~lt~~~~~~~~~~l~~~a~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~p~~~~~~~ 372 (413)
T 2vqm_A 293 EGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRS 372 (413)
T ss_dssp SSCTTTTCCCCBCHHHHHHHHHHHHTSGGGCEEEEECCCCCHHHHHHHHHHHHHHHTTCCCCCCCHHHHHCCCCHHHHHH
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHHhcCCCEEEEeCcCCChHHHHHHHHHHHHHHcCCCCCCCChhhhhcCCChHHHHH
Confidence 98 66999999999999999999999999999999999999999999999999999987654432 24678899999
Q ss_pred HHHHHHHHhhccccccccccCCCCCC
Q psy8282 598 IKETISSHKAYWSSLKFLVALPENKL 623 (632)
Q Consensus 598 i~~vi~~~~~~W~~~~~~~~~~~~~~ 623 (632)
|++|++.|++||++++...+..+..+
T Consensus 373 ~~~v~~~~~~~W~~l~~~~~~~~~~~ 398 (413)
T 2vqm_A 373 MEKVMEIHSKYWRCLQRTTSTAGRSL 398 (413)
T ss_dssp HHHHHHHHHTTCGGGTSCCCCTTSCH
T ss_pred HHHHHHHHHHHhhhhhcchhhcCcCc
Confidence 99999999999999998666555444
No 3
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=7.5e-70 Score=581.32 Aligned_cols=272 Identities=33% Similarity=0.559 Sum_probs=239.2
Q ss_pred cccCCCCC-CCCCCCC--CCccccC------CCC-CccccHHHH----------HHHHHHHHcCCCcceeEeeCCCCCCC
Q psy8282 332 HRYDHGSF-FPHSKDA--GPHNVGE------GKG-EGFNVNVAW----------NKVVDSVLNGESAHGVAIIRPPGHHA 391 (632)
Q Consensus 332 ~~~~~~~l-~vHt~~Y--~~~~~~~------~~g-~~~~s~~s~----------~~av~~v~~g~~~~afalvRPpGHHA 391 (632)
+..++++| +||+++| .+++.+. -.. |++.+.+++ ++|+++|++|+.+++||++|||||||
T Consensus 65 ~~a~~~~l~~vH~~~Yv~~l~~~~~~~~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppGHHA 144 (369)
T 1zz1_A 65 VAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHA 144 (369)
T ss_dssp CCCCHHHHHTTSCHHHHHHHHHHHHSTTCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCCTTC
T ss_pred CcCCHHHHHHhccHHHHHHHHHhCccccceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCccCc
Confidence 33555665 9999999 3332211 122 666655333 89999999999999999999999999
Q ss_pred CCCCCCCccccchHHHHHHHHHHhcCCCeeEEeeeccccCccchhccccCCCeEEEeeccCCCCCCCC-CCCCCCCCCcC
Q psy8282 392 EQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFP-HSKDAGPHNVG 470 (632)
Q Consensus 392 ~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~~yP-gt~~g~~~~~G 470 (632)
++++++|||+|||+||||++|++++|++||+|||||||||||||+|||+||+|+|+|+|+++ +|| +| |..+++|
T Consensus 145 ~~~~a~GFC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~---~yP~~t--G~~~e~G 219 (369)
T 1zz1_A 145 PHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHL---CFPPDS--GYSTERG 219 (369)
T ss_dssp CTTCCBTTBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETT---SSSTTC--CCTTCCC
T ss_pred CCCCCCCchHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCC---CCCCCC--CcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999987 999 98 6678999
Q ss_pred CCCCCccEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHHHHHhc--
Q psy8282 471 EGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA-- 548 (632)
Q Consensus 471 ~g~g~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~l~~~a-- 548 (632)
.++|+|+++||||| +|++|++|+.+|+++|+|++++|+||+||||||||+|.+||||+|+||+++|.++++.|++++
T Consensus 220 ~g~g~g~~vNvPL~-~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~ 298 (369)
T 1zz1_A 220 AGNGHGYNINVPLP-PGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAAD 298 (369)
T ss_dssp CGGGTTCEEEEEEC-TTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEeeecC-CCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 99999999999997 899999999999999999999999999999999999999999999999999999999999875
Q ss_pred --CCcEEEEeCCCCCcchHHHHHHHHHHHHcCCCCCCCCcc-----ccCChhHHHHHHHHHHHHhhccc
Q psy8282 549 --QGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESD-----LDINSSAVTSIKETISSHKAYWS 610 (632)
Q Consensus 549 --~grvv~vLEGGY~~~~la~~~~~~~~~Llg~~~~~~~~~-----~~~~~~~~~~i~~vi~~~~~~W~ 610 (632)
++|++++|||||++++++++|.+++++|+|.+. ...+. ..++.+..+.++++++..++.|.
T Consensus 299 ~~~g~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~-~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 366 (369)
T 1zz1_A 299 ICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRS-LPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLA 366 (369)
T ss_dssp HSTTCEEEEECCCCCTTTHHHHHHHHHHHHHCCCC-CCCTTHHHHHTTCCCSCCHHHHHHHHTTGGGGG
T ss_pred hCCCCEEEEECCCCCccHHHHHHHHHHHHHhCCCC-CCCchhHHHhhccccchHHHHHHHHHHHHHHhh
Confidence 789999999999999999999999999999765 21111 12344567788899999998883
No 4
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=1.5e-65 Score=541.42 Aligned_cols=215 Identities=31% Similarity=0.527 Sum_probs=199.8
Q ss_pred CCccccHHHH----------HHHHHHHHcCCCcceeEeeCCCCCCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEee
Q psy8282 356 GEGFNVNVAW----------NKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILD 425 (632)
Q Consensus 356 g~~~~s~~s~----------~~av~~v~~g~~~~afalvRPpGHHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD 425 (632)
+|++.+.+|| ++|+++|++|+ +++||++|||||||++++++|||+|||+||||++++++ |++||+|||
T Consensus 116 ~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~-~~afal~rppGHHA~~~~a~GFC~~NnvaiAa~~l~~~-g~~RV~ivD 193 (341)
T 3q9b_A 116 AETAISPGTWEAALSSMASAIDGADLIAAGH-KAAFSLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDK-GAKKIAILD 193 (341)
T ss_dssp TTCCBCTTHHHHHHHHHHHHHHHHHHHHHTC-SEEEECCSSCCTTCBTTBBBTTBSSCHHHHHHHHHHHT-TCSCEEEEE
T ss_pred CCCCcChhHHHHHHHHHHHHHHHHHHHHhCC-CceEecCCCCCCCCCCCCCCCccccCHHHHHHHHHHHc-CCCeEEEEe
Confidence 3566555554 89999999998 89999999999999999999999999999999999985 799999999
Q ss_pred eccccCccchhccccCCCeEEEeeccCCCCCCCCC-CCCCCCCCcCCCCCCccEEEecCCCCCCChHHHHHHHHHHHHHH
Q psy8282 426 WDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPH-SKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPI 504 (632)
Q Consensus 426 ~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~~yPg-t~~g~~~~~G~g~g~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p~ 504 (632)
||||||||||+|||+||+|+|+|+|+++ +.+||+ | |..+++|.++|+|+++||||| +|++|++|+.+|+++ +|.
T Consensus 194 ~DvHHGnGtq~iF~~d~~Vl~~S~H~~~-~~~yP~~t--G~~~e~G~g~g~g~~vNvpL~-~g~~d~~y~~~~~~~-l~~ 268 (341)
T 3q9b_A 194 VDFHHGNGTQDIFYERGDVFFASLHGDP-AEAFPHFL--GYAEETGKGAGAGTTANYPMG-RGTPYSVWGEALTDS-LKR 268 (341)
T ss_dssp CSSSCCHHHHHHHTTCTTEEEEEEEECG-GGSTTCSS--CCTTCCCCGGGTTCEEEEEEC-TTCBHHHHHHHHHHH-HHH
T ss_pred cCCCCCcchhHHhcCCCCEEEEeccCCC-ccCCCCCC--CcccccCCCCCCceeEeeecC-CCCChHHHHHHHHHH-HHH
Confidence 9999999999999999999999999975 349998 6 667899999999999999997 899999999999986 578
Q ss_pred HHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHHHHHcC
Q psy8282 505 AYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLG 578 (632)
Q Consensus 505 l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~~~Llg 578 (632)
+++|+||+||||||||+|.+||||+|+||+++|.++++.|++++ +|++++|||||+++++++++.+++++|.|
T Consensus 269 l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~~-~~~v~vleGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 269 IAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASG-VPLLVVMEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp HHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHTTS-SCEEEEECCCCCCTTHHHHHHHHHHHHHC
T ss_pred HHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHHhC-CCEEEEECCCCChHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999985 79999999999999999999999998854
No 5
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=5.6e-65 Score=540.14 Aligned_cols=214 Identities=31% Similarity=0.565 Sum_probs=199.8
Q ss_pred CCccccHHHH----------HHHHHHHHcCCCcceeEeeCCCCCCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEee
Q psy8282 356 GEGFNVNVAW----------NKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILD 425 (632)
Q Consensus 356 g~~~~s~~s~----------~~av~~v~~g~~~~afalvRPpGHHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD 425 (632)
+|++.+.+|| ++|+++|++|+ +++||++|||||||++++++|||+|||+||||++++++ .+||+|||
T Consensus 135 ~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~-~~afal~rPpGHHA~~~~a~GFC~fNnvAiAa~~l~~~--~~RV~ivD 211 (362)
T 3men_A 135 GSCPVGEHTWRAAYWSAQSALAAAAAVRDGA-PAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRAR--HARVAVLD 211 (362)
T ss_dssp TTCCBCTTHHHHHHHHHHHHHHHHHHHHTTC-SEEEECCSSCCTTCBTTBBBTTBSSCHHHHHHHHHTTT--CSCEEEEE
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHcCC-CceEEeCCCCCCCCCCCCCCCccccCHHHHHHHHHHHc--CCeEEEEe
Confidence 4566655554 89999999999 99999999999999999999999999999999999877 58999999
Q ss_pred eccccCccchhccccCCCeEEEeeccCCCCCCCCC-CCCCCCCCcCCCCCCccEEEecCCCCCCChHHHHHHHHHHHHHH
Q psy8282 426 WDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPH-SKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPI 504 (632)
Q Consensus 426 ~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~~yPg-t~~g~~~~~G~g~g~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p~ 504 (632)
||||||||||+|||+||+|+|+|+|+++ +.+||+ | |..+++|.++|+|+++||||| +|++|++|+.+|+++ +|+
T Consensus 212 ~DvHHGnGtq~iF~~d~~Vl~~S~H~~~-~~~yP~~t--G~~~e~G~g~g~g~~vNvPL~-~g~~d~~yl~~~~~~-l~~ 286 (362)
T 3men_A 212 TDMHHGQGIQEIFYARRDVLYVSIHGDP-TNFYPAVA--GFDDERGAGEGLGYNVNLPMP-HGSSEAAFFERVDDA-LRE 286 (362)
T ss_dssp CSSSCCHHHHHHTTTCSSEEEEEEEECC-TTSTTCSS--CCTTCCCSGGGTTSEEEEEEC-TTBCHHHHHHHHHHH-HHH
T ss_pred CcCCCchhHhHHhcCCCCEEEEEecCCC-ccCCCCCC--CccccccCCCCCceeEeeccC-CCCChHHHHHHHHHH-HHH
Confidence 9999999999999999999999999976 459998 6 667899999999999999997 899999999999986 578
Q ss_pred HHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHHHHHcC
Q psy8282 505 AYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLG 578 (632)
Q Consensus 505 l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~~~Llg 578 (632)
+++|+||+||||||||+|.+||||+|+||+++|.++++.|++++ +|++++|||||+++++++++.+++++|.+
T Consensus 287 l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~~-~~~v~vleGGY~~~~l~~~~~a~l~~l~~ 359 (362)
T 3men_A 287 LRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALR-LPTVIVQEGGYHIESLEANARSFFGGFGA 359 (362)
T ss_dssp HHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTTC-CCEEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHhhC-CCEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999984 79999999999999999999999999975
No 6
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=4.5e-64 Score=537.34 Aligned_cols=244 Identities=26% Similarity=0.449 Sum_probs=214.8
Q ss_pred cccccCCCCC-CCCCCCC--CCcccc----------CCC---CCccccHHHH----------HHHHHHHHcCCCcceeEe
Q psy8282 330 SVHRYDHGSF-FPHSKDA--GPHNVG----------EGK---GEGFNVNVAW----------NKVVDSVLNGESAHGVAI 383 (632)
Q Consensus 330 ~~~~~~~~~l-~vHt~~Y--~~~~~~----------~~~---g~~~~s~~s~----------~~av~~v~~g~~~~afal 383 (632)
.++..++++| +||+++| .+++.+ .+. .|+..+.+++ ++|+++|++|+.+ +|+
T Consensus 58 ~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~--~Ai 135 (388)
T 3ew8_A 58 KPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCK--VAI 135 (388)
T ss_dssp CCCCCCHHHHTTTSCHHHHHHHHHHHHHC--------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCS--EEE
T ss_pred CCCCCCHHHHHhhCCHHHHHHHHHhcccccccchhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCc--eee
Confidence 3344666665 9999999 222110 111 2344444333 8999999999865 577
Q ss_pred eCCCC-CCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEeeeccccCccchhccccCCCeEEEeeccCCCCCCCCCCC
Q psy8282 384 IRPPG-HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSK 462 (632)
Q Consensus 384 vRPpG-HHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~~yPgt~ 462 (632)
+|||| |||++++++|||+|||+||||+++++. .+||+|||||||||||||+|||+||+|+|+|+|+++.+ |||+|
T Consensus 136 ~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~-~fPgt- 211 (388)
T 3ew8_A 136 NWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGT- 211 (388)
T ss_dssp ETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTT-CTTCC-
T ss_pred ecCCcccceeecCCCCchhhhHHHHHHHHHHhc--CCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCC-CCCCC-
Confidence 89999 999999999999999999999999754 68999999999999999999999999999999999755 99998
Q ss_pred CCCCCCcCCCCCCccEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHH
Q psy8282 463 DAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTH 542 (632)
Q Consensus 463 ~g~~~~~G~g~g~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~ 542 (632)
|..+++|.++|+|+++||||| +|++|++|+.+|+++|.|++++|+||+||||||||+|.+||||+|+||+++|.++++
T Consensus 212 -G~~~e~G~g~g~g~~vNvPL~-~G~~d~~y~~~~~~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~ 289 (388)
T 3ew8_A 212 -GDVSDVGLGKGRYYSVNVPIQ-DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLK 289 (388)
T ss_dssp -CCTTCCCCGGGTTSEEEEEEC-TTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHH
T ss_pred -CCcccccCCCCcceeeeccCC-CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHH
Confidence 667899999999999999997 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEeCCCCCcchHHHHHHHHHHHHcCCCCC
Q psy8282 543 WLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLP 582 (632)
Q Consensus 543 ~l~~~a~grvv~vLEGGY~~~~la~~~~~~~~~Llg~~~~ 582 (632)
.|+++ +.|+++++||||++.++++||+.++..|+|.++|
T Consensus 290 ~l~~~-~~p~l~~~gGGY~~~~var~w~~~~~~l~g~~l~ 328 (388)
T 3ew8_A 290 YILQW-QLATLILGGGGYNLANTARCWTYLTGVILGKTLS 328 (388)
T ss_dssp HHHTT-CCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHhc-CCCEEEEECCCCChhHHHHHHHHHHHHHcCCCCC
Confidence 99987 4799999999999999999999999999998765
No 7
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.2e-64 Score=535.83 Aligned_cols=242 Identities=26% Similarity=0.405 Sum_probs=213.2
Q ss_pred cccCCCCC-CCCCCCC--CCccccC--------------CCCCccccHHHH----------HHHHHHHHcCCCcceeEee
Q psy8282 332 HRYDHGSF-FPHSKDA--GPHNVGE--------------GKGEGFNVNVAW----------NKVVDSVLNGESAHGVAII 384 (632)
Q Consensus 332 ~~~~~~~l-~vHt~~Y--~~~~~~~--------------~~g~~~~s~~s~----------~~av~~v~~g~~~~afalv 384 (632)
+..++++| +||+++| .+++... -..|+..+.+++ +.|+++|++|+.++| ++
T Consensus 51 ~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A--~~ 128 (376)
T 4a69_A 51 YQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIA--IN 128 (376)
T ss_dssp CCCCHHHHTTTSCHHHHHHHHHCCTTTGGGGHHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEE--EE
T ss_pred CCCCHHHHHHhCCHHHHHHHHHhCcccchhhhhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCccee--ee
Confidence 44666665 9999999 2221100 123455544333 889999999987655 56
Q ss_pred CCCC-CCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEeeeccccCccchhccccCCCeEEEeeccCCCCCCCCCCCC
Q psy8282 385 RPPG-HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKD 463 (632)
Q Consensus 385 RPpG-HHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~~yPgt~~ 463 (632)
+||| |||++++++|||+|||+||||+++++++ +||+|||||||||||||+|||+||+|+|+|+|+++.+ |||+|
T Consensus 129 ~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~--~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~-~fPgt-- 203 (376)
T 4a69_A 129 WAGGLHHAKKFEASGFCYVNDIVIGILELLKYH--PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNY-FFPGT-- 203 (376)
T ss_dssp TTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC--SCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTT-CTTCC--
T ss_pred CCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC--CcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCc-CCCCC--
Confidence 6665 9999999999999999999999998763 8999999999999999999999999999999999754 89998
Q ss_pred CCCCCcCCCCCCccEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHH
Q psy8282 464 AGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHW 543 (632)
Q Consensus 464 g~~~~~G~g~g~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~ 543 (632)
|..+++|.++|+|+++||||| +|++|++|+.+|+++|.|++++|+||+||||||||+|.+||||+|+||+++|.++++.
T Consensus 204 G~~~e~G~g~g~g~~vNvPL~-~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~ 282 (376)
T 4a69_A 204 GDMYEVGAESGRYYCLNVPLR-DGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEY 282 (376)
T ss_dssp CCTTCCCCGGGTTSEEEEEEC-TTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHH
T ss_pred CCccccCCCCCCceeEeeecC-CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHH
Confidence 668899999999999999997 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEeCCCCCcchHHHHHHHHHHHHcCCCCC
Q psy8282 544 LKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLP 582 (632)
Q Consensus 544 l~~~a~grvv~vLEGGY~~~~la~~~~~~~~~Llg~~~~ 582 (632)
++++ ++|+++++||||++.++++||+..+..++|.+++
T Consensus 283 l~~~-~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~ 320 (376)
T 4a69_A 283 VKSF-NIPLLVLGGGGYTVRNVARCWTYETSLLVEEAIS 320 (376)
T ss_dssp HHTT-CCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHc-CCCEEEEECCCCChhHHHHHHHHHHHHhcCCCcc
Confidence 9988 6899999999999999999999999999998765
No 8
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=4.6e-64 Score=537.67 Aligned_cols=241 Identities=27% Similarity=0.447 Sum_probs=212.5
Q ss_pred cccCCCCC-CCCCCCC--CCcccc--------------CCCCCccccHH----------HHHHHHHHHHcCCCcceeEee
Q psy8282 332 HRYDHGSF-FPHSKDA--GPHNVG--------------EGKGEGFNVNV----------AWNKVVDSVLNGESAHGVAII 384 (632)
Q Consensus 332 ~~~~~~~l-~vHt~~Y--~~~~~~--------------~~~g~~~~s~~----------s~~~av~~v~~g~~~~afalv 384 (632)
+..++++| +||+++| .+++.+ ...+|++.+.+ ..++|+++|++|+ +++
T Consensus 50 ~~at~~~l~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~-----~a~ 124 (375)
T 1c3p_A 50 RPATKEELLLFHTEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN-----VAF 124 (375)
T ss_dssp CCCCHHHHTTTSCHHHHHHHHHHHHHTSCCTTHHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC-----EEE
T ss_pred CCCCHHHHHHhCCHHHHHHHHHhccccCCChHHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC-----cee
Confidence 34555664 9999999 222110 01244554442 2289999999987 457
Q ss_pred CCCC--CCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEeeeccccCccchhccccCCCeEEEeeccCCCCCCCCCCC
Q psy8282 385 RPPG--HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSK 462 (632)
Q Consensus 385 RPpG--HHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~~yPgt~ 462 (632)
|||| |||++++++|||+|||+||||++++++ |.+||+|||||||||||||+|||+||+|+|+|+|+++. .|||+|
T Consensus 125 ~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~-g~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~-~ffPgt- 201 (375)
T 1c3p_A 125 NPAGGMHHAFKSRANGFCYINNPAVGIEYLRKK-GFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPE-YAFPFE- 201 (375)
T ss_dssp ETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHT-TCCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTT-TSTTSS-
T ss_pred ecCcccceeeeccCCCceeecHHHHHHHHHHHh-CCCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCCC-CCCCCC-
Confidence 8888 999999999999999999999999866 67999999999999999999999999999999999874 479998
Q ss_pred CCCCCCcC-CCCCCccEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHH
Q psy8282 463 DAGPHNVG-EGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFT 541 (632)
Q Consensus 463 ~g~~~~~G-~g~g~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~ 541 (632)
|..+++| .|+|+|+++||||| +|++|++|+.+|+++|.|++++|+||+||||||||+|.+||||+|+||+++|.+++
T Consensus 202 -G~~~e~G~~g~g~g~~vNvPL~-~g~~D~~yl~a~~~~l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~ 279 (375)
T 1c3p_A 202 -KGFLEEIGEGKGKGYNLNIPLP-KGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAF 279 (375)
T ss_dssp -SCCTTCCCCGGGTTSEEEEEEC-TTCCHHHHHHHHHHHHHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHH
T ss_pred -CCccccCCcCCCCceEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHH
Confidence 6678999 99999999999997 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEeCCCCCcchHHHHHHHHHHHHcCCCCCC
Q psy8282 542 HWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPL 583 (632)
Q Consensus 542 ~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~~~Llg~~~~~ 583 (632)
+.|++++. +++++|||||++.++++||+.++++|+|.++|.
T Consensus 280 ~~l~~~a~-~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~ 320 (375)
T 1c3p_A 280 NIVREVFG-EGVYLGGGGYHPYALARAWTLIWCELSGREVPE 320 (375)
T ss_dssp HHHHHHHC-SCEEECCCCCCHHHHHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHhcc-ceEEEECCCCChHHHHHHHHHHHHHHcCCCCCc
Confidence 99999985 699999999999999999999999999998764
No 9
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=6.4e-63 Score=525.88 Aligned_cols=241 Identities=25% Similarity=0.442 Sum_probs=213.6
Q ss_pred cccCCCCC-CCCCCCC--CCcccc--------------CCCCCccccHHHH----------HHHHHHHHcCCCcceeEee
Q psy8282 332 HRYDHGSF-FPHSKDA--GPHNVG--------------EGKGEGFNVNVAW----------NKVVDSVLNGESAHGVAII 384 (632)
Q Consensus 332 ~~~~~~~l-~vHt~~Y--~~~~~~--------------~~~g~~~~s~~s~----------~~av~~v~~g~~~~afalv 384 (632)
+..++++| +|||++| .+++.+ .-.+|+..+.+++ +.|++++++|+ .++|++
T Consensus 51 ~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~--~~~Ai~ 128 (367)
T 3max_A 51 HKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQ--TDMAVN 128 (367)
T ss_dssp CCCCHHHHTTTSCHHHHHHHHHCCGGGGGGCHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTS--CSEEEE
T ss_pred CCCCHHHHHhhCCHHHHHHHHHhCccccchhhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccC--cceEec
Confidence 34566665 9999999 222110 1124555554333 78889998875 468899
Q ss_pred CCCC-CCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEeeeccccCccchhccccCCCeEEEeeccCCCCCCCCCCCC
Q psy8282 385 RPPG-HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKD 463 (632)
Q Consensus 385 RPpG-HHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~~yPgt~~ 463 (632)
|||| |||++++++|||+|||+||||+++++. .+||+|||||||||||||+||++||+|+|+|+|+++ .|||+|
T Consensus 129 ~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~--~~fPgt-- 202 (367)
T 3max_A 129 WAGGLHHAKKSEASGFCYVNDIVLAILELLKY--HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYG--EYFPGT-- 202 (367)
T ss_dssp TTCCCTTCBTTBCBTTBCSCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECS--SCTTCC--
T ss_pred CCCCCCcCCcCCCCCchhhhHHHHHHHHHHHc--CCcEEEEecCCCCCchhhHHhcCCCCEEEEecccCC--CCCCCC--
Confidence 9999 999999999999999999999999865 489999999999999999999999999999999985 389998
Q ss_pred CCCCCcCCCCCCccEEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHH
Q psy8282 464 AGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHW 543 (632)
Q Consensus 464 g~~~~~G~g~g~g~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~ 543 (632)
|..+++|.++|+|+++||||| +|++|++|+.+|+++|.|++++|+||+||||||||+|.+||||.|+||+++|.++++.
T Consensus 203 g~~~e~G~g~g~g~~vNvPL~-~g~~d~~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~ 281 (367)
T 3max_A 203 GDLRDIGAGKGKYYAVNFPMR-DGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEV 281 (367)
T ss_dssp CCTTCCCCGGGTTCEEEEEEC-TTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHH
T ss_pred CCccccCCCCCCceEEEEecC-CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHH
Confidence 667899999999999999997 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEeCCCCCcchHHHHHHHHHHHHcCCCCC
Q psy8282 544 LKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLP 582 (632)
Q Consensus 544 l~~~a~grvv~vLEGGY~~~~la~~~~~~~~~Llg~~~~ 582 (632)
++++ ++|+++++||||++.++++||+..+..++|.++|
T Consensus 282 ~~~~-~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i~ 319 (367)
T 3max_A 282 VKTF-NLPLLMLGGGGYTIRNVARCWTYETAVALDCEIP 319 (367)
T ss_dssp HHTT-CCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHhc-CCCEEEEeCCCCChhHHHHHHHHHHHHHhhcccc
Confidence 9987 6899999999999999999999999999998876
No 10
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=3.2e-52 Score=445.33 Aligned_cols=229 Identities=32% Similarity=0.451 Sum_probs=200.6
Q ss_pred chhHHHHHHHhhhhhhcCCccee-eecCCcccChhhHHHHHhhhhcccCHHHHHHHhh-------ccCceeeCCCccccC
Q psy8282 59 DNHLLALLIYLYGVMYVNPMSII-ITEHPLALSFADLSVWCYVCEAYVDNHLLALLIY-------LYGVMYVKPMSIIIT 130 (632)
Q Consensus 59 ~~~~l~qL~~Iy~~L~v~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-------~~~~~y~~~~~~~~~ 130 (632)
+...-..+..+++.|...++... ....|++++.++|..+ |+++|+ +.++.... ..++++++| +
T Consensus 36 Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~v--H~~~Yv--~~l~~~~~~~~~~~l~~~dtp~~~-----~ 106 (369)
T 1zz1_A 36 HLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRA--HSAAHL--ENMKRVSNLPTGGDTGDGITMMGN-----G 106 (369)
T ss_dssp CTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTT--SCHHHH--HHHHHHHHSTTCEECSSSSCEECT-----T
T ss_pred CCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHh--ccHHHH--HHHHHhCccccceecCCCCCCCCh-----H
Confidence 33444566677777777666543 3478899999999999 999999 66655433 123677777 9
Q ss_pred HHHHHHHhcCccccccccCcchhHHHHHHHHcCCCcceeeecCCCCCCCCCCCCCcccccchHHHHHHHHHHhCCCCeEE
Q psy8282 131 EHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVL 210 (632)
Q Consensus 131 ~~~~a~~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rppGHHA~~~~~~GFC~~NnvAIAa~~l~~~~g~~rV~ 210 (632)
++++|++++|++ ++|+++|++|+.+++||++|||||||++++++|||+|||+||||++|++++|++||+
T Consensus 107 ~~~~a~~aaG~~-----------l~aa~~v~~g~~~~afa~~rppGHHA~~~~a~GFC~fNnvAiAa~~l~~~~g~~RV~ 175 (369)
T 1zz1_A 107 GLEIARLSAGGA-----------VELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVA 175 (369)
T ss_dssp THHHHHHHHHHH-----------HHHHHHHHTTSCSEEEECCSSCCTTCCTTCCBTTBSSCHHHHHHHHHHHTSCCSCEE
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHhCCCcceEEEecCCccCcCCCCCCCchHhhHHHHHHHHHHHhcCCCeEE
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCcceeecccCCCCEEEEeeccCCCCCCCC-CCCCCCCCCcCCCCCccceeeccCCCCCCCcHHHHHHHHHHH
Q psy8282 211 ILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFP-HSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVI 289 (632)
Q Consensus 211 IvD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyP-g~~~~~~~~~G~g~g~g~~vNipl~~~g~~D~~Yl~~~~~~l 289 (632)
|||||||||||||+|||+||+|+|+|||+++ ||| +++ ..+++|.|+|+|+++||||| +|++|++|+.+|+++|
T Consensus 176 IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~---~yP~~tG--~~~e~G~g~g~g~~vNvPL~-~g~~d~~yl~~~~~~v 249 (369)
T 1zz1_A 176 ILDWDVHHGNGTQDIWWNDPSVLTISLHQHL---CFPPDSG--YSTERGAGNGHGYNINVPLP-PGSGNAAYLHAMDQVV 249 (369)
T ss_dssp EEECSSSCCHHHHHHTTTCTTEEEEEEEETT---SSSTTCC--CTTCCCCGGGTTCEEEEEEC-TTCBHHHHHHHHHHTH
T ss_pred EEecCCCCchhhhHHhcCCCCEEEEeccCCC---CCCCCCC--cccccCCCCCCceEEeeecC-CCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999964 899 875 45789999999999999999 9999999999999999
Q ss_pred HHHHhh-cccccccchhcccccccCCC
Q psy8282 290 LPMYAL-DNHGLSRVLILDWDVHHGNG 315 (632)
Q Consensus 290 ~p~~~~-D~~~lg~~l~~~w~~~~~~~ 315 (632)
+|++++ .|..+ +++.++|++.+|+
T Consensus 250 ~p~l~~f~PdlI--vvsaG~Da~~~Dp 274 (369)
T 1zz1_A 250 LPALRAYRPQLI--IVGSGFDASMLDP 274 (369)
T ss_dssp HHHHHHHCCSEE--EEEECCTTBTTCT
T ss_pred HHHHHHcCCCEE--EEeCCccCCCCCC
Confidence 999988 77773 4888999998873
No 11
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=1e-50 Score=437.01 Aligned_cols=252 Identities=35% Similarity=0.527 Sum_probs=205.7
Q ss_pred ceeEEecccchhh--------chhHHHHHHHhhhhhhcCCcceee-ecCCcccChhhHHHHHhhhhcccCH---------
Q psy8282 46 DLSVWCYVCEAYV--------DNHLLALLIYLYGVMYVNPMSIII-TEHPLALSFADLSVWCYVCEAYVDN--------- 107 (632)
Q Consensus 46 ~~svwCy~Cd~~v--------~~~~l~qL~~Iy~~L~v~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~--------- 107 (632)
.-.||.-.|-.+- ++..-..|..|++.|...++...+ ...|+++|.+||..+ |+++|+..
T Consensus 38 t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~~~~p~~At~eeL~~v--Hs~~YI~~~~~~~l~~~ 115 (421)
T 2pqp_A 38 TGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSV--HSERHVLLYGTNPLSRL 115 (421)
T ss_dssp EEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTT--SCHHHHHHHHCCTTCSC
T ss_pred EEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhc--CCHHHHHhhhcchhhhh
Confidence 3455554444443 456667888888888888876543 478999999999999 99998721
Q ss_pred ----HHHHH-Hhhc------cCceeeCCCccc--cCHHHHHHHhcCccccccccCcchhHHHHHHHHcCCCcceeeecCC
Q psy8282 108 ----HLLAL-LIYL------YGVMYVKPMSII--ITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRP 174 (632)
Q Consensus 108 ----~~~~~-~~~~------~~~~y~~~~~~~--~~~~~~a~~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rp 174 (632)
+++.. .... .+.+.+.+.+++ .+++++|++++|++ ++|+++|++|+.+++||++||
T Consensus 116 ~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~-----------~~a~~~v~~g~~~~afa~~rP 184 (421)
T 2pqp_A 116 KLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSV-----------TDLAFKVASRELKNGFAVVRP 184 (421)
T ss_dssp CCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHH-----------HHHHHHHHTTSSSEEEECCSS
T ss_pred hhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHH-----------HHHHHHHHcCccccceeeCCC
Confidence 00100 0000 011111111211 28999999999999 999999999999999999999
Q ss_pred CCCCCCCCCCCcccccchHHHHHHHHHHhCCCCeEEEEeccccCCcceeecccCCCCEEEEeeccCCCCCCCCCCCCCCC
Q psy8282 175 PGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGP 254 (632)
Q Consensus 175 pGHHA~~~~~~GFC~~NnvAIAa~~l~~~~g~~rV~IvD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyPg~~~~~~ 254 (632)
|||||++++++|||+||||||||++|+++++++||+|||||||||||||+|||+||+|||+|||++++|.|||+++ ..
T Consensus 185 pGHHA~~~~a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g~~yPgtG--~~ 262 (421)
T 2pqp_A 185 PGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSG--AV 262 (421)
T ss_dssp CCTTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGTSTTCCC--CT
T ss_pred CCCCCCCCCCCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCEEEEecccCCCCCCCCCCC--Ch
Confidence 9999999999999999999999999999999999999999999999999999999999999999988788999975 56
Q ss_pred CCcCCCCCccceeeccCC---CCCCCcHHHHHHHHHHHHHHHhh-cccccccchhcccccccCC
Q psy8282 255 HNVGEGKGEGFNVNVAWN---KKGMSDPEYIAAFQQVILPMYAL-DNHGLSRVLILDWDVHHGN 314 (632)
Q Consensus 255 ~~~G~g~g~g~~vNipl~---~~g~~D~~Yl~~~~~~l~p~~~~-D~~~lg~~l~~~w~~~~~~ 314 (632)
+++|.|.|+|+++||||+ +++++|++|+.+|+++|+|++++ +|..+ +++.++|++.+|
T Consensus 263 ~e~G~g~g~g~~vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlI--vvsaG~Da~~gD 324 (421)
T 2pqp_A 263 DEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLV--LVSAGFDAAEGH 324 (421)
T ss_dssp TCCCCGGGTTCEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEE--EEEECCTTBTTC
T ss_pred hhccCCCCccceeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEE--EEeCCccccccc
Confidence 789999999999999997 24589999999999999999988 77774 488899999886
No 12
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=1.5e-49 Score=419.55 Aligned_cols=223 Identities=26% Similarity=0.367 Sum_probs=186.2
Q ss_pred HHHHHhhhhhhcCCcceeeecCCcccChhhHHHHHhhhhcccCHHHHHHHhh----------------------------
Q psy8282 64 ALLIYLYGVMYVNPMSIIITEHPLALSFADLSVWCYVCEAYVDNHLLALLIY---------------------------- 115 (632)
Q Consensus 64 ~qL~~Iy~~L~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~---------------------------- 115 (632)
+.|..+.+.|....+. ....|++++.++|.++ |+++|+ +.++....
T Consensus 31 ~Rl~~i~~~L~~~gl~--~~~~p~~at~e~L~~v--Hs~~Yi--~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~ 104 (341)
T 3q9b_A 31 FRAEWILAAVKEAGFD--DVVAPARHGLETVLKV--HDAGYL--NFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTD 104 (341)
T ss_dssp HHHHHHHHHHHHTTCC--CEECCCCCCSTTGGGT--SCHHHH--HHHHHHHHHHHHTTCSSCBCCCBCCCTTCCCCCCSS
T ss_pred HHHHHHHHHHHhCCCC--ceeCCCCCCHHHHHHh--CCHHHH--HHHHHhhhhhhhcccccccccccccccccccccccc
Confidence 3455555566655553 2467889999999999 999998 44444311
Q ss_pred --------cc-CceeeCCCccccCHHHHHHHhcCccccccccCcchhHHHHHHHHcCCCcceeeecCCCCCCCCCCCCCc
Q psy8282 116 --------LY-GVMYVKPMSIIITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCG 186 (632)
Q Consensus 116 --------~~-~~~y~~~~~~~~~~~~~a~~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rppGHHA~~~~~~G 186 (632)
.. ++++++| ++|++|++++|++ ++|+++|++|+ +++||++|||||||++++++|
T Consensus 105 ~~~~~g~~~~d~dt~~~~-----~~~~aa~~aaG~~-----------l~a~~~v~~g~-~~afal~rppGHHA~~~~a~G 167 (341)
T 3q9b_A 105 IEGQIGYYCNAAETAISP-----GTWEAALSSMASA-----------IDGADLIAAGH-KAAFSLCRPPGHHAGIDMFGG 167 (341)
T ss_dssp HHHHHHHTBSBTTCCBCT-----THHHHHHHHHHHH-----------HHHHHHHHHTC-SEEEECCSSCCTTCBTTBBBT
T ss_pred hhcccceeccCCCCCcCh-----hHHHHHHHHHHHH-----------HHHHHHHHhCC-CceEecCCCCCCCCCCCCCCC
Confidence 01 2455555 9999999999999 99999999998 899999999999999999999
Q ss_pred ccccchHHHHHHHHHHhCCCCeEEEEeccccCCcceeecccCCCCEEEEeeccCCCCCCCCCCCCCCCCCcCCCCCccce
Q psy8282 187 FCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFN 266 (632)
Q Consensus 187 FC~~NnvAIAa~~l~~~~g~~rV~IvD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyPg~~~~~~~~~G~g~g~g~~ 266 (632)
||+|||+||||++|+++ |++||+|||||||||||||+|||+||+|||+|+|+++ +.|||+. .+..+++|.|.|+|++
T Consensus 168 FC~~NnvaiAa~~l~~~-g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~-~~~yP~~-tG~~~e~G~g~g~g~~ 244 (341)
T 3q9b_A 168 YCFINNAAVAAQRLLDK-GAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDP-AEAFPHF-LGYAEETGKGAGAGTT 244 (341)
T ss_dssp TBSSCHHHHHHHHHHHT-TCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECG-GGSTTCS-SCCTTCCCCGGGTTCE
T ss_pred ccccCHHHHHHHHHHHc-CCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccCCC-ccCCCCC-CCcccccCCCCCCcee
Confidence 99999999999999985 6999999999999999999999999999999999963 4589983 2356789999999999
Q ss_pred eeccCCCCCCCcHHHHHHHHHHHHHHHhh-cccccccchhcccccccCCCC
Q psy8282 267 VNVAWNKKGMSDPEYIAAFQQVILPMYAL-DNHGLSRVLILDWDVHHGNGT 316 (632)
Q Consensus 267 vNipl~~~g~~D~~Yl~~~~~~l~p~~~~-D~~~lg~~l~~~w~~~~~~~~ 316 (632)
+||||| +|++|++|+.+|++++ |.+++ .|..+ +++.++|++.+|+.
T Consensus 245 vNvpL~-~g~~d~~y~~~~~~~l-~~l~~f~Pd~i--vvsaG~D~~~~Dpl 291 (341)
T 3q9b_A 245 ANYPMG-RGTPYSVWGEALTDSL-KRIAAFGAEAI--VVSLGVDTFEQDPI 291 (341)
T ss_dssp EEEEEC-TTCBHHHHHHHHHHHH-HHHHHHTCSCE--EEEECCTTBTTCTT
T ss_pred EeeecC-CCCChHHHHHHHHHHH-HHHHhhCCCEE--EEeCCccccCCCCC
Confidence 999999 8999999999999875 66655 77663 48888999988843
No 13
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=7.8e-49 Score=416.48 Aligned_cols=223 Identities=28% Similarity=0.431 Sum_probs=188.0
Q ss_pred hHHHHHHHhhhhhhcCCcceeeecCCcccChhhHHHHHhhhhcccCHHHHHHHhh-------------------------
Q psy8282 61 HLLALLIYLYGVMYVNPMSIIITEHPLALSFADLSVWCYVCEAYVDNHLLALLIY------------------------- 115 (632)
Q Consensus 61 ~~l~qL~~Iy~~L~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~------------------------- 115 (632)
+.=+.|..|.+.|....+ ....|++++.++|.++ |+++|+ +.++....
T Consensus 49 E~P~Rl~~i~~~L~~~gl---~~~~p~~At~e~L~~v--Hs~~YI--~~l~~~~~~~~~~~~~~~~e~~p~~~p~~~~~p 121 (362)
T 3men_A 49 EVPERAARLVAAAFAMGF---PVREPDDFGIAPIAAV--HDTHYL--RFLETVHREWKAMPEDWGDEAMSNIFVREPNAL 121 (362)
T ss_dssp SCTHHHHHHHHHHHHTTC---CEECCCCCCSHHHHTT--SCHHHH--HHHHHHHHHHHTSCGGGCSSBCCCBCCCSSCCC
T ss_pred CChHHHHHHHHHHHhCCC---eEeCCCCCCHHHHHHh--CCHHHH--HHHHHhhhhhhhccccccccccccccccccccc
Confidence 344466666777776665 3467889999999999 999998 44443210
Q ss_pred ----------c-cCceeeCCCccccCHHHHHHHhcCccccccccCcchhHHHHHHHHcCCCcceeeecCCCCCCCCCCCC
Q psy8282 116 ----------L-YGVMYVKPMSIIITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEP 184 (632)
Q Consensus 116 ----------~-~~~~y~~~~~~~~~~~~~a~~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rppGHHA~~~~~ 184 (632)
. -+++++++ ++|++|++++|++ ++|+++|++|+ +++||++|||||||+++++
T Consensus 122 ~~~~~~~g~~~~d~Dtpv~~-----~~~~aa~~aaG~~-----------l~aa~~v~~g~-~~afal~rPpGHHA~~~~a 184 (362)
T 3men_A 122 RGVLAQAARHLADGSCPVGE-----HTWRAAYWSAQSA-----------LAAAAAVRDGA-PAAYALCRPPGHHARVDAA 184 (362)
T ss_dssp CSHHHHHHHHBCBTTCCBCT-----THHHHHHHHHHHH-----------HHHHHHHHTTC-SEEEECCSSCCTTCBTTBB
T ss_pred ccccccccccccCCCCccch-----hHHHHHHHHHHHH-----------HHHHHHHHcCC-CceEEeCCCCCCCCCCCCC
Confidence 0 12355555 9999999999999 99999999998 8999999999999999999
Q ss_pred CcccccchHHHHHHHHHHhCCCCeEEEEeccccCCcceeecccCCCCEEEEeeccCCCCCCCCCCCCCCCCCcCCCCCcc
Q psy8282 185 CGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEG 264 (632)
Q Consensus 185 ~GFC~~NnvAIAa~~l~~~~g~~rV~IvD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyPg~~~~~~~~~G~g~g~g 264 (632)
+|||+|||+||||++|+++ .+||+|||||||||||||+|||+||+|||+|||+++ +.|||+. .+..+++|.|.|+|
T Consensus 185 ~GFC~fNnvAiAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~-~~~yP~~-tG~~~e~G~g~g~g 260 (362)
T 3men_A 185 GGFCYLNNAAIAAQALRAR--HARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDP-TNFYPAV-AGFDDERGAGEGLG 260 (362)
T ss_dssp BTTBSSCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECC-TTSTTCS-SCCTTCCCSGGGTT
T ss_pred CCccccCHHHHHHHHHHHc--CCeEEEEeCcCCCchhHhHHhcCCCCEEEEEecCCC-ccCCCCC-CCccccccCCCCCc
Confidence 9999999999999999977 599999999999999999999999999999999964 4689983 23567899999999
Q ss_pred ceeeccCCCCCCCcHHHHHHHHHHHHHHHhh-cccccccchhcccccccCCC
Q psy8282 265 FNVNVAWNKKGMSDPEYIAAFQQVILPMYAL-DNHGLSRVLILDWDVHHGNG 315 (632)
Q Consensus 265 ~~vNipl~~~g~~D~~Yl~~~~~~l~p~~~~-D~~~lg~~l~~~w~~~~~~~ 315 (632)
+++||||| +|++|++|+.+|++++ |.+++ .|..+ +++.++|++.+|+
T Consensus 261 ~~vNvPL~-~g~~d~~yl~~~~~~l-~~l~~f~PdlI--vvsaG~Da~~~Dp 308 (362)
T 3men_A 261 YNVNLPMP-HGSSEAAFFERVDDAL-RELRRFAPDAL--VLSLGFDVYRDDP 308 (362)
T ss_dssp SEEEEEEC-TTBCHHHHHHHHHHHH-HHHHHHCCSEE--EEEECSTTBTTCT
T ss_pred eeEeeccC-CCCChHHHHHHHHHHH-HHHHhcCCCEE--EEECcccCcCCCC
Confidence 99999999 8999999999999875 66665 77763 4888999998884
No 14
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=2.7e-49 Score=428.43 Aligned_cols=239 Identities=36% Similarity=0.588 Sum_probs=195.2
Q ss_pred chhHHHHHHHhhhhhhcCCccee-eecCCcccChhhHHHHHhhhhcccC--------H-----HH-HHHHhh-----ccC
Q psy8282 59 DNHLLALLIYLYGVMYVNPMSII-ITEHPLALSFADLSVWCYVCEAYVD--------N-----HL-LALLIY-----LYG 118 (632)
Q Consensus 59 ~~~~l~qL~~Iy~~L~v~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~l~--------~-----~~-~~~~~~-----~~~ 118 (632)
++..-..|..+++.|...++... ....|+++|.+||..+ |+++|+. . .. +..... ..+
T Consensus 31 HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~v--Hs~~Yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (413)
T 2vqm_A 31 HPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTV--HSEAHTLLYGTNPLNRQKLDSKKLLGSLASVFVRLPCG 108 (413)
T ss_dssp ---CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTT--SCHHHHHHHHSCGGGGCC----HHHHHHHHHEEECTTS
T ss_pred CCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHh--CCHHHHHHHhcCchhhhHhhhhhhccchhhhhhccccC
Confidence 33334456666777776666533 3478899999999998 8888751 0 00 011110 112
Q ss_pred ceeeCCCccc--cCHHHHHHHhcCccccccccCcchhHHHHHHHHcCCCcceeeecCCCCCCCCCCCCCcccccchHHHH
Q psy8282 119 VMYVKPMSII--ITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVA 196 (632)
Q Consensus 119 ~~y~~~~~~~--~~~~~~a~~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rppGHHA~~~~~~GFC~~NnvAIA 196 (632)
..++...+++ .+++++|++++|++ ++|+++|++|+.+++||++|||||||++++++|||+|||+|||
T Consensus 109 ~~~~d~dt~~~~~~s~~aA~laaG~~-----------l~a~~~v~~g~~~~afa~vrppGHHA~~~~a~GFC~~Nnvaia 177 (413)
T 2vqm_A 109 GVGVDSDTIWNEVHSAGAARLAVGCV-----------VELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVA 177 (413)
T ss_dssp CEEECTTSTHHHHHHHHHHHHHHHHH-----------HHHHHHHHTTSSSEEEECCCSCCTTCBTTBCBTTBSSCHHHHH
T ss_pred CcCccCCccccchhHHHHHHHHHHHH-----------HHHHHHHhcCCccceeeecccccccCcCCCCCCccccchHHHH
Confidence 2333333322 26899999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEeccccCCcceeecccCCCCEEEEeeccCCCCCCCCCCCCCCCCCcCCCCCccceeeccCCC---
Q psy8282 197 AKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNK--- 273 (632)
Q Consensus 197 a~~l~~~~g~~rV~IvD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyPg~~~~~~~~~G~g~g~g~~vNipl~~--- 273 (632)
|++++++++++||+|||||||||||||+|||+||+|+|+|+|+++++.|||+++ ...++|.|.|.|+++||||+.
T Consensus 178 a~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG--~~~e~G~g~g~g~~~n~pl~~g~~ 255 (413)
T 2vqm_A 178 AKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSG--APDEVGTGPGVGFNVNMAFTGGLD 255 (413)
T ss_dssp HHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCC--CTTCCCSGGGTTCEEEEEECSCSS
T ss_pred HHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCCC--CHHHcCCCcccccccccccccccC
Confidence 999999999999999999999999999999999999999999998888999875 568999999999999999872
Q ss_pred CCCCcHHHHHHHHHHHHHHHhh-cccccccchhcccccccCC
Q psy8282 274 KGMSDPEYIAAFQQVILPMYAL-DNHGLSRVLILDWDVHHGN 314 (632)
Q Consensus 274 ~g~~D~~Yl~~~~~~l~p~~~~-D~~~lg~~l~~~w~~~~~~ 314 (632)
++++|++|+.+|+++|+|++++ +|..+ +++.++|++.++
T Consensus 256 ~~~~D~~y~~~~~~~v~p~~~~f~Pdli--vvsaG~Da~~~d 295 (413)
T 2vqm_A 256 PPMGDAEYLAAFRTVVMPIASEFAPDVV--LVSSGFDAVEGH 295 (413)
T ss_dssp SCCCHHHHHHHHHHTHHHHHHHHCCSEE--EEEECCTTBSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCEE--EEeCChhhcCCC
Confidence 4689999999999999999988 77773 488899999886
No 15
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=3.1e-48 Score=415.10 Aligned_cols=223 Identities=26% Similarity=0.468 Sum_probs=188.7
Q ss_pred HHHHhhhhhhcCCccee-eecCCcccChhhHHHHHhhhhcccCHHHHHHHhh----------ccCceeeCCCccccCHHH
Q psy8282 65 LLIYLYGVMYVNPMSII-ITEHPLALSFADLSVWCYVCEAYVDNHLLALLIY----------LYGVMYVKPMSIIITEHP 133 (632)
Q Consensus 65 qL~~Iy~~L~v~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~----------~~~~~y~~~~~~~~~~~~ 133 (632)
.+..+.+.+...++... ....|+++|.++|.++ |+++|+ +.++.... .++..+.|| +++++|+
T Consensus 37 Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~v--Hs~~Yi--~~l~~~~~~~~~~~~~~~~~~lg~Dtp--~~~~~~e 110 (388)
T 3ew8_A 37 RASMVHSLIEAYALHKQMRIVKPKVASMEEMATF--HTDAYL--QHLQKVSQEGDDDHPDSIEYGLGYLCP--ATEGIFD 110 (388)
T ss_dssp HHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTT--SCHHHH--HHHHHHHHHC--------CCSCSSSSC--CCTTHHH
T ss_pred HHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhh--CCHHHH--HHHHHhcccccccchhhhhccCCCCCC--CChhHHH
Confidence 45555566666666543 3478899999999999 999998 44544321 122234556 4459999
Q ss_pred HHHHhcCccccccccCcchhHHHHHHHHcCCCcceeeecCCCC-CCCCCCCCCcccccchHHHHHHHHHHhCCCCeEEEE
Q psy8282 134 LALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPG-HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLIL 212 (632)
Q Consensus 134 ~a~~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rppG-HHA~~~~~~GFC~~NnvAIAa~~l~~~~g~~rV~Iv 212 (632)
+|++++|++ ++|+++|++|+.+ +|++|||| |||++++++|||+||||||||++|++. .+||+||
T Consensus 111 ~a~~aaGgs-----------l~Aa~~v~~g~~~--~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l~~~--~~RV~iv 175 (388)
T 3ew8_A 111 YAAAIGGAT-----------ITAAQCLIDGMCK--VAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERILYV 175 (388)
T ss_dssp HHHHHHHHH-----------HHHHHHHHTTSCS--EEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTT--CSCEEEE
T ss_pred HHHHHHHHH-----------HHHHHHHHcCCCc--eeeecCCcccceeecCCCCchhhhHHHHHHHHHHhc--CCeEEEE
Confidence 999999999 9999999999865 67899999 999999999999999999999999864 6999999
Q ss_pred eccccCCcceeecccCCCCEEEEeeccCCCCCCCCCCCCCCCCCcCCCCCccceeeccCCCCCCCcHHHHHHHHHHHHHH
Q psy8282 213 DWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPM 292 (632)
Q Consensus 213 D~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyPg~~~~~~~~~G~g~g~g~~vNipl~~~g~~D~~Yl~~~~~~l~p~ 292 (632)
|||||||||||+|||+||+|||+|+|+++.+ |||+++ ...++|.|.|+|+++||||| +|++|++|+.+|+++|.|+
T Consensus 176 D~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~-~fPgtG--~~~e~G~g~g~g~~vNvPL~-~G~~d~~y~~~~~~~l~p~ 251 (388)
T 3ew8_A 176 DLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTG--DVSDVGLGKGRYYSVNVPIQ-DGIQDEKYYQICESVLKEV 251 (388)
T ss_dssp ECSSSCCHHHHHHTTTCSSEEEEEEEECCTT-CTTCCC--CTTCCCCGGGTTSEEEEEEC-TTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCChhHHHHhccCCCEEEEecCCCCCC-CCCCCC--CcccccCCCCcceeeeccCC-CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998654 899975 46789999999999999999 9999999999999999999
Q ss_pred Hhh-cccccccchhcccccccCC
Q psy8282 293 YAL-DNHGLSRVLILDWDVHHGN 314 (632)
Q Consensus 293 ~~~-D~~~lg~~l~~~w~~~~~~ 314 (632)
+++ .|..+ +++.++|++.+|
T Consensus 252 ~~~F~PdlI--vvsaG~Da~~~D 272 (388)
T 3ew8_A 252 YQAFNPKAV--VLQLGADTIAGD 272 (388)
T ss_dssp HHHHCCSEE--EEECCSTTBTTC
T ss_pred HHHhCCCEE--EEECCccCCCCC
Confidence 988 77773 488899999887
No 16
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.1e-48 Score=413.04 Aligned_cols=225 Identities=27% Similarity=0.387 Sum_probs=188.4
Q ss_pred hHHHHHHHhhhhhhcCCccee-eecCCcccChhhHHHHHhhhhcccCHHHHHHHh-------------hccC-ceeeCCC
Q psy8282 61 HLLALLIYLYGVMYVNPMSII-ITEHPLALSFADLSVWCYVCEAYVDNHLLALLI-------------YLYG-VMYVKPM 125 (632)
Q Consensus 61 ~~l~qL~~Iy~~L~v~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-------------~~~~-~~y~~~~ 125 (632)
..-..+..+++.|...++... ....|+++|.+||.++ |+++|+ +.++... .+.| ++++++
T Consensus 24 e~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~v--Hs~~Yi--~~l~~~~~~~~~~~~~~~~~~~l~~Dtpv~~- 98 (376)
T 4a69_A 24 MKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRF--HSEDYI--DFLQRVSPTNMQGFTKSLNAFNVGDDCPVFP- 98 (376)
T ss_dssp CCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTT--SCHHHH--HHHHHCCTTTGGGGHHHHHHHTCSSSSCCCT-
T ss_pred cCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHh--CCHHHH--HHHHHhCcccchhhhhhhceeccCCCCCcch-
Confidence 334466667777777776543 3478999999999999 999988 3443321 1122 244444
Q ss_pred ccccCHHHHHHHhcCccccccccCcchhHHHHHHHHcCCCcceeeecCCCC-CCCCCCCCCcccccchHHHHHHHHHHhC
Q psy8282 126 SIIITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPG-HHAEQDEPCGFCIFNNVSVAAKYALDNH 204 (632)
Q Consensus 126 ~~~~~~~~~a~~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rppG-HHA~~~~~~GFC~~NnvAIAa~~l~~~~ 204 (632)
++|++|++++|++ ++|+++|++|+.+ +|+++||| |||++++++|||+|||+||||++|++++
T Consensus 99 ----~~~e~a~~aaGgt-----------l~Aa~~v~~g~~~--~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~ 161 (376)
T 4a69_A 99 ----GLFEFCSRYTGAS-----------LQGATQLNNKICD--IAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYH 161 (376)
T ss_dssp ----THHHHHHHHHHHH-----------HHHHHHHHTTSCS--EEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC
T ss_pred ----HHHHHHHHHHHHH-----------HHHHHHHHcCCcc--eeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC
Confidence 9999999999999 9999999999866 55677776 9999999999999999999999999764
Q ss_pred CCCeEEEEeccccCCcceeecccCCCCEEEEeeccCCCCCCCCCCCCCCCCCcCCCCCccceeeccCCCCCCCcHHHHHH
Q psy8282 205 GLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAA 284 (632)
Q Consensus 205 g~~rV~IvD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyPg~~~~~~~~~G~g~g~g~~vNipl~~~g~~D~~Yl~~ 284 (632)
+||+|||||||||||||+|||+||+|||+|+|+++. .|||+|+ ...++|.|.|+|+++||||| +|++|++|+.+
T Consensus 162 --~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~-~~fPgtG--~~~e~G~g~g~g~~vNvPL~-~G~~D~~yl~~ 235 (376)
T 4a69_A 162 --PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGN-YFFPGTG--DMYEVGAESGRYYCLNVPLR-DGIDDQSYKHL 235 (376)
T ss_dssp --SCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECST-TCTTCCC--CTTCCCCGGGTTSEEEEEEC-TTCBHHHHHHH
T ss_pred --CcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCC-cCCCCCC--CccccCCCCCCceeEeeecC-CCCCHHHHHHH
Confidence 899999999999999999999999999999999864 3899965 56889999999999999999 89999999999
Q ss_pred HHHHHHHHHhh-cccccccchhcccccccCCC
Q psy8282 285 FQQVILPMYAL-DNHGLSRVLILDWDVHHGNG 315 (632)
Q Consensus 285 ~~~~l~p~~~~-D~~~lg~~l~~~w~~~~~~~ 315 (632)
|+++|+|++++ .|..+ +++.++|++.+|+
T Consensus 236 ~~~~l~p~~~~f~Pd~I--vvsaG~Da~~~Dp 265 (376)
T 4a69_A 236 FQPVINQVVDFYQPTCI--VLQCGADSLGCDR 265 (376)
T ss_dssp HHHHHHHHHHHHCCSEE--EEECCGGGBTTCS
T ss_pred HHHHHHHHHHHhCCCEE--EEeCcccCCCCCc
Confidence 99999999988 77774 4888999998873
No 17
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=7.9e-48 Score=412.21 Aligned_cols=220 Identities=25% Similarity=0.353 Sum_probs=183.5
Q ss_pred HHHHHhhhhhhcCCcce-eeecCCcccChhhHHHHHhhhhcccCHHHHHHHhh------------cc--CceeeCCCccc
Q psy8282 64 ALLIYLYGVMYVNPMSI-IITEHPLALSFADLSVWCYVCEAYVDNHLLALLIY------------LY--GVMYVKPMSII 128 (632)
Q Consensus 64 ~qL~~Iy~~L~v~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~------------~~--~~~y~~~~~~~ 128 (632)
..+..+++.|...++.. .....|++++.++|..+ |+++|+ +.++.... ++ ++++++|
T Consensus 26 ~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~v--H~~~Yv--~~l~~~~~~~~~~~~~~~~~~l~~~dtp~~~---- 97 (375)
T 1c3p_A 26 PRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLF--HTEDYI--NTLMEAERCQCVPKGAREKYNIGGYENPVSY---- 97 (375)
T ss_dssp CCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTT--SCHHHH--HHHHHHHHHTSCCTTHHHHHCCSSSSSCSST----
T ss_pred HHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHh--CCHHHH--HHHHHhccccCCChHHhhccccCCCCcccCh----
Confidence 35555666666655543 23467889999999999 999998 44443221 12 3455555
Q ss_pred cCHHHHHHHhcCccccccccCcchhHHHHHHHHcCCCcceeeecCCCC--CCCCCCCCCcccccchHHHHHHHHHHhCCC
Q psy8282 129 ITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPG--HHAEQDEPCGFCIFNNVSVAAKYALDNHGL 206 (632)
Q Consensus 129 ~~~~~~a~~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rppG--HHA~~~~~~GFC~~NnvAIAa~~l~~~~g~ 206 (632)
+++++|++++|++ ++|+++|++|+ .+ +|||| |||++++++|||+|||+||||++|+++ |.
T Consensus 98 -~~~~~a~~aaGg~-----------l~aa~~v~~g~----~a-~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~-g~ 159 (375)
T 1c3p_A 98 -AMFTGSSLATGST-----------VQAIEEFLKGN----VA-FNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKK-GF 159 (375)
T ss_dssp -TTTHHHHHHHHHH-----------HHHHHHHHTTC----EE-EETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHT-TC
T ss_pred -hHHHHHHHHhhHH-----------HHHHHHHHcCC----ce-eecCcccceeeeccCCCceeecHHHHHHHHHHHh-CC
Confidence 9999999999999 99999999987 33 46776 999999999999999999999999866 67
Q ss_pred CeEEEEeccccCCcceeecccCCCCEEEEeeccCCCCCCCCCCCCCCCCCcC-CCCCccceeeccCCCCCCCcHHHHHHH
Q psy8282 207 SRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVG-EGKGEGFNVNVAWNKKGMSDPEYIAAF 285 (632)
Q Consensus 207 ~rV~IvD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyPg~~~~~~~~~G-~g~g~g~~vNipl~~~g~~D~~Yl~~~ 285 (632)
+||+|||||||||||||+|||+||+|+|+|||+++ ..|||+++ ...++| .|+|+|+++||||| +|++|++|+.+|
T Consensus 160 ~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~-~~ffPgtG--~~~e~G~~g~g~g~~vNvPL~-~g~~D~~yl~a~ 235 (375)
T 1c3p_A 160 KRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSP-EYAFPFEK--GFLEEIGEGKGKGYNLNIPLP-KGLNDNEFLFAL 235 (375)
T ss_dssp CCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECT-TTSTTSSS--CCTTCCCCGGGTTSEEEEEEC-TTCCHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHhccCCCEEEEecccCC-CCCCCCCC--CccccCCcCCCCceEEEEeCC-CCCCHHHHHHHH
Confidence 99999999999999999999999999999999974 34789875 567888 99999999999999 999999999999
Q ss_pred HHHHHHHHhh-cccccccchhcccccccCCC
Q psy8282 286 QQVILPMYAL-DNHGLSRVLILDWDVHHGNG 315 (632)
Q Consensus 286 ~~~l~p~~~~-D~~~lg~~l~~~w~~~~~~~ 315 (632)
+++|+|++++ +|..+ +++.++|++.+|+
T Consensus 236 ~~~l~p~l~~F~PdlI--vvsaG~Da~~~Dp 264 (375)
T 1c3p_A 236 EKSLEIVKEVFEPEVY--LLQLGTDPLLEDY 264 (375)
T ss_dssp HHHHHHHHHHCCCSEE--EEECCSTTBTTCT
T ss_pred HHHHHHHHHHhCCCEE--EEECCccccCCCC
Confidence 9999999988 77764 4888999998874
No 18
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.1e-47 Score=408.77 Aligned_cols=224 Identities=23% Similarity=0.394 Sum_probs=188.2
Q ss_pred HHHHHHhhhhhhcCCcceee-ecCCcccChhhHHHHHhhhhcccCHHHHHHHhh-----------ccCceeeCCCccccC
Q psy8282 63 LALLIYLYGVMYVNPMSIII-TEHPLALSFADLSVWCYVCEAYVDNHLLALLIY-----------LYGVMYVKPMSIIIT 130 (632)
Q Consensus 63 l~qL~~Iy~~L~v~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-----------~~~~~y~~~~~~~~~ 130 (632)
-..++.+++.|...++...+ ...|+++|.+||.++ |+++|+ +.++.... .++.-..+| ++++
T Consensus 26 P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~v--Hs~~Yi--~~l~~~~~~~~~~~~~~~~~~~l~~Dtp--~~~~ 99 (367)
T 3max_A 26 PHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKY--HSDEYI--KFLRSIRPDNMSEYSKQMQRFNVGEDCP--VFDG 99 (367)
T ss_dssp THHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTT--SCHHHH--HHHHHCCGGGGGGCHHHHHHTTCSSSSC--CCTT
T ss_pred HHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhh--CCHHHH--HHHHHhCccccchhhhHhhhcCCCCCCC--CchH
Confidence 34666677777777765433 478899999999999 999998 44544211 011111233 3449
Q ss_pred HHHHHHHhcCccccccccCcchhHHHHHHHHcCCCcceeeecCCCC-CCCCCCCCCcccccchHHHHHHHHHHhCCCCeE
Q psy8282 131 EHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPG-HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRV 209 (632)
Q Consensus 131 ~~~~a~~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rppG-HHA~~~~~~GFC~~NnvAIAa~~l~~~~g~~rV 209 (632)
+|++|++++|++ ++|+++|.+++ .++|++|||| |||++++++|||+|||+||||++++++ .+||
T Consensus 100 ~~e~a~~aaGgs-----------l~aa~~v~~~~--~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~~--~~RV 164 (367)
T 3max_A 100 LFEFCQLSTGGS-----------VAGAVKLNRQQ--TDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKY--HQRV 164 (367)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHTTS--CSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTTT--CSCE
T ss_pred HHHHHHHHHHHH-----------HHHHHHhcccC--cceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHHc--CCcE
Confidence 999999999999 99999998876 4689999999 999999999999999999999999875 3899
Q ss_pred EEEeccccCCcceeecccCCCCEEEEeeccCCCCCCCCCCCCCCCCCcCCCCCccceeeccCCCCCCCcHHHHHHHHHHH
Q psy8282 210 LILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVI 289 (632)
Q Consensus 210 ~IvD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyPg~~~~~~~~~G~g~g~g~~vNipl~~~g~~D~~Yl~~~~~~l 289 (632)
+|||||||||||||+|||+||+|||+|+|++ +.|||+++ ...++|.|.|+|+++||||| +|++|++|+.+|+++|
T Consensus 165 ~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~--~~~fPgtg--~~~e~G~g~g~g~~vNvPL~-~g~~d~~y~~~~~~~~ 239 (367)
T 3max_A 165 LYIDIDIHHGDGVEEAFYTTDRVMTVSFHKY--GEYFPGTG--DLRDIGAGKGKYYAVNFPMR-DGIDDESYGQIFKPII 239 (367)
T ss_dssp EEEECSSSCCHHHHHHTTTCSSEEEEEEEEC--SSCTTCCC--CTTCCCCGGGTTCEEEEEEC-TTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCchhhHHhcCCCCEEEEecccC--CCCCCCCC--CccccCCCCCCceEEEEecC-CCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 35899875 46789999999999999999 9999999999999999
Q ss_pred HHHHhh-cccccccchhcccccccCC
Q psy8282 290 LPMYAL-DNHGLSRVLILDWDVHHGN 314 (632)
Q Consensus 290 ~p~~~~-D~~~lg~~l~~~w~~~~~~ 314 (632)
+|++++ .|..+ +++.++|++.+|
T Consensus 240 ~~~~~~f~Pd~i--vvsaG~D~~~~D 263 (367)
T 3max_A 240 SKVMEMYQPSAV--VLQCGADSLSGD 263 (367)
T ss_dssp HHHHHHHCCSEE--EEECCGGGBTTC
T ss_pred HHHHHHhCCCEE--EEECCccCcCCC
Confidence 999988 77773 488899999887
No 19
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.30 E-value=4.7e-13 Score=123.10 Aligned_cols=58 Identities=33% Similarity=0.559 Sum_probs=49.7
Q ss_pred cceeecccc-hhhHHHhhccc---CCCCceeecCceeEEecccchhhchhHHHHHHHhhhhh
Q psy8282 16 FSLVRCGRY-IEEHSMLHGVS---TEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVM 73 (632)
Q Consensus 16 ~~~v~CgR~-~~~Ha~~H~~~---~~H~~~~~~~~~svwCy~Cd~~v~~~~l~qL~~Iy~~L 73 (632)
=++|+|||| .++||++||++ ++||++||+.+|+||||.||+||..+...+|.++.+.+
T Consensus 60 CG~vgCgr~~~~~Ha~~H~~~~~~t~H~l~~~l~t~~vwCY~cd~~V~~~~~~~l~~~v~~~ 121 (126)
T 2i50_A 60 CGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEVQYCSSNQLGQVVDYV 121 (126)
T ss_dssp TCCEEECTTSSSCHHHHHHHSCCSSCCCEEEETTTCCEEETTTTEEECCCTTSHHHHHHHHH
T ss_pred CCccccCCCCcchHHHHHHhCcCCCCCcEEEECCCCeEEeCCCCcEEEcCcchhHHHHHHHH
Confidence 478999998 68999999999 89999999999999999999999965555555555544
No 20
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.27 E-value=1.2e-12 Score=117.47 Aligned_cols=51 Identities=47% Similarity=0.923 Sum_probs=46.6
Q ss_pred cceeecccchhhHHHhhcccCCCCceeecCceeEEecccchhhchhHHHHH
Q psy8282 16 FSLVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVDNHLLALL 66 (632)
Q Consensus 16 ~~~v~CgR~~~~Ha~~H~~~~~H~~~~~~~~~svwCy~Cd~~v~~~~l~qL 66 (632)
=++|+|||+.++||++||++++||+++|+.+.+||||.||+||.++.|...
T Consensus 42 CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~cd~~V~~~~L~d~ 92 (109)
T 3c5k_A 42 CYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDV 92 (109)
T ss_dssp TCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTTTEEBCCGGGHHH
T ss_pred cCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCCCCEEecccccCh
Confidence 368999999999999999999999999999999999999999998765543
No 21
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.18 E-value=5e-12 Score=111.30 Aligned_cols=43 Identities=40% Similarity=0.807 Sum_probs=41.6
Q ss_pred cceeecccchhhHHHhhcccCCCCceeecCceeEEecccchhh
Q psy8282 16 FSLVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYV 58 (632)
Q Consensus 16 ~~~v~CgR~~~~Ha~~H~~~~~H~~~~~~~~~svwCy~Cd~~v 58 (632)
=++|+|||+.++||++||++++||++||+.+..||||.||+||
T Consensus 46 Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwCy~cdd~V 88 (97)
T 2uzg_A 46 CSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEV 88 (97)
T ss_dssp CCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEETTTTEEE
T ss_pred CCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEECCCCcEe
Confidence 4689999999999999999999999999999999999999998
No 22
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.17 E-value=1.4e-12 Score=115.55 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=44.6
Q ss_pred cceeecccc-hhhHHHhhcccCCCCceeecC--ceeEEecccchhhch--hHHHHHHHh
Q psy8282 16 FSLVRCGRY-IEEHSMLHGVSTEHPLALSFA--DLSVWCYVCEAYVDN--HLLALLIYL 69 (632)
Q Consensus 16 ~~~v~CgR~-~~~Ha~~H~~~~~H~~~~~~~--~~svwCy~Cd~~v~~--~~l~qL~~I 69 (632)
=++|+|||| .|+||++||++++|||++|++ +..||||.||+||.+ +++.||++|
T Consensus 40 CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwcY~cd~~V~~p~~~~~~~~~~ 98 (102)
T 2ida_A 40 CGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCYVDEVMFDLSDRMTPHNGPI 98 (102)
T ss_dssp SCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEETTTTEEEECTTTCCCCSSCC
T ss_pred cCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEEcCCCcEEECccccccccCCC
Confidence 358999997 999999999999999998887 567999999999985 334444443
No 23
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.11 E-value=1.6e-11 Score=113.24 Aligned_cols=56 Identities=27% Similarity=0.398 Sum_probs=49.7
Q ss_pred cceeecccch------hhHHHhhcccCCCCceeecCce-----eEEecccchhhchhHHHHHHHhhh
Q psy8282 16 FSLVRCGRYI------EEHSMLHGVSTEHPLALSFADL-----SVWCYVCEAYVDNHLLALLIYLYG 71 (632)
Q Consensus 16 ~~~v~CgR~~------~~Ha~~H~~~~~H~~~~~~~~~-----svwCy~Cd~~v~~~~l~qL~~Iy~ 71 (632)
=++|+||||. ++||++||++++||+++++.++ .||||.||+||.+..|++.-.-|+
T Consensus 52 CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~v~l~t~~~~~~~vwcY~cd~~V~dp~L~~hl~~fg 118 (129)
T 2g45_A 52 DGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHLSHFG 118 (129)
T ss_dssp TCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTEEEECTTHHHHHHTTT
T ss_pred CCccccCccccCCCCcCcHHHHHhhhcCCCEEEECCCCCCCCCeEEECCCCCEeECccHHHHHHHHC
Confidence 3689999997 9999999999999999999996 999999999999888776655554
No 24
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=98.28 E-value=2e-07 Score=109.38 Aligned_cols=53 Identities=26% Similarity=0.333 Sum_probs=47.7
Q ss_pred cceeecccch------hhHHHhhcccCCCCceeecCc-----eeEEecccchhhchhHHHHHHH
Q psy8282 16 FSLVRCGRYI------EEHSMLHGVSTEHPLALSFAD-----LSVWCYVCEAYVDNHLLALLIY 68 (632)
Q Consensus 16 ~~~v~CgR~~------~~Ha~~H~~~~~H~~~~~~~~-----~svwCy~Cd~~v~~~~l~qL~~ 68 (632)
-++|+|||+. ++||++||++++||+++++.+ ..||||.||+||....|++..+
T Consensus 233 Cg~vgC~r~~~~~~~~~~ha~~H~~~~~H~~~~~l~t~~~~~~~~~cy~~~~~v~~~~l~~~l~ 296 (854)
T 3ihp_A 233 DGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHLS 296 (854)
T ss_dssp TCCEEECCBC-CCCBCCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTEECBCTTHHHHHH
T ss_pred CCCccccccccCCCCCchHHHHHHhhcCCcEEEEcCCcCCCCCeEEEccCCCeeeCccHHHHHH
Confidence 3679999987 899999999999999999999 8899999999999888877443
No 25
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=98.11 E-value=7.3e-07 Score=97.08 Aligned_cols=45 Identities=22% Similarity=0.498 Sum_probs=42.1
Q ss_pred ceeecccchhhHHHhhcccCCCCceeecCceeEEecccchhhchhHH
Q psy8282 17 SLVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVDNHLL 63 (632)
Q Consensus 17 ~~v~CgR~~~~Ha~~H~~~~~H~~~~~~~~~svwCy~Cd~~v~~~~l 63 (632)
++++||+ ++||++|+++++||+++++++..+|||.||+||....|
T Consensus 69 g~~~c~~--~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~d~~l 113 (476)
T 3mhs_A 69 GFCGCWN--HSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDL 113 (476)
T ss_dssp SCEEETT--TTHHHHHHHHHCCCEEEETTTCCEEETTTTEEECSCHH
T ss_pred CCCccCC--chHHHHHhcccCCcEEEECCCCcEEeCCCCCCcccHHH
Confidence 3899998 99999999999999999999999999999999997765
No 26
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=53.24 E-value=14 Score=34.70 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=38.2
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEE
Q psy8282 478 NVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILA 555 (632)
Q Consensus 478 ~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~v 555 (632)
.+|.-+ .|.+-...+..|++.+ ..++||+|||..|. |...+.+.....-..+.+..+.+.++. .+.+++++
T Consensus 53 viN~Gi--~G~tt~~~l~r~~~~v----~~~~Pd~vvi~~G~ND~~~~~~~~~~~~~~~~l~~ii~~~~~-~~~~iil~ 124 (209)
T 4hf7_A 53 YIGRGI--SGQTSYQFLLRFREDV----INLSPALVVINAGTNDVAENTGAYNEDYTFGNIASMAELAKA-NKIKVILT 124 (209)
T ss_dssp EEEEEC--TTCCHHHHHHHHHHHT----GGGCCSEEEECCCHHHHTTSSSSCCHHHHHHHHHHHHHHHHH-TTCEEEEE
T ss_pred EEEecc--CcccHHHHHHHHHHHH----HhcCCCEEEEEeCCCcCccccccccHHHHHHHHHHhhHHHhc-cCceEEEE
Confidence 356655 3555556666666543 35899999999998 765443322222222334444444433 23344443
No 27
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=49.40 E-value=17 Score=33.12 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=38.5
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHH----HHHHHHHhcCCcE
Q psy8282 478 NVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAH----FTHWLKALAQGRI 552 (632)
Q Consensus 478 ~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~----~~~~l~~~a~grv 552 (632)
.+|.-. .|..-.+.+..+++. +..++||+|+|..|. |...... ..+.+.|.. +.+.+++ .+.++
T Consensus 49 v~n~g~--~G~~~~~~~~~~~~~----~~~~~pd~vvi~~G~ND~~~~~~----~~~~~~~~~~~~~~i~~~~~-~~~~v 117 (204)
T 3p94_A 49 FVDRGI--SGQTTSEMLVRFRQD----VINLKPKAVVILAGINDIAHNNG----VIALENVFGNLVSMAELAKA-NHIKV 117 (204)
T ss_dssp EEEEEC--TTCCHHHHHHHHHHH----TGGGCEEEEEEECCHHHHTTTTS----CCCHHHHHHHHHHHHHHHHH-TTCEE
T ss_pred eEEccc--CcccHHHHHHHHHHH----HHhCCCCEEEEEeecCccccccC----CCCHHHHHHHHHHHHHHHHh-CCCeE
Confidence 466666 366656666655543 345899999999997 6554321 245555544 4444433 23355
Q ss_pred EEE
Q psy8282 553 ILA 555 (632)
Q Consensus 553 v~v 555 (632)
+++
T Consensus 118 il~ 120 (204)
T 3p94_A 118 IFC 120 (204)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 28
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=47.73 E-value=79 Score=28.75 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=34.1
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHH----HHHHHHHhc
Q psy8282 479 VNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAH----FTHWLKALA 548 (632)
Q Consensus 479 vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~----~~~~l~~~a 548 (632)
.|.... .+++....+..+++. +...+||+|++..|.- | +..+++.|.. +.+.+++..
T Consensus 49 ~~~~~~-~~~~~~~~~~~~~~~----~~~~~pd~Vvi~~G~N----D----~~~~~~~~~~~l~~ii~~l~~~~ 109 (200)
T 4h08_A 49 GRLSNS-KSVGDPALIEELAVV----LKNTKFDVIHFNNGLH----G----FDYTEEEYDKSFPKLIKIIRKYA 109 (200)
T ss_dssp EEEEES-CCTTCHHHHHHHHHH----HHHSCCSEEEECCCSS----C----TTSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEecc-CCccHHHHHHHHHHH----HhcCCCCeEEEEeeeC----C----CCCCHHHHHHHHHHHHHHHhhhC
Confidence 344432 455566666666543 4578999999999962 2 2456666654 444444443
No 29
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=44.66 E-value=1.2e+02 Score=27.25 Aligned_cols=64 Identities=23% Similarity=0.276 Sum_probs=35.9
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHH----HHHHHHHHhcCCcE
Q psy8282 478 NVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYA----HFTHWLKALAQGRI 552 (632)
Q Consensus 478 ~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~----~~~~~l~~~a~grv 552 (632)
.+|.-. .|.+-...+..+++ .+.+.+||+|+|..|. |... ..+.+.|. .+.+.+++. +.++
T Consensus 37 v~n~g~--~G~~~~~~~~~~~~----~~~~~~pd~Vii~~G~ND~~~-------~~~~~~~~~~l~~li~~~~~~-~~~v 102 (190)
T 1ivn_A 37 VVNASI--SGDTSQQGLARLPA----LLKQHQPRWVLVELGGNDGLR-------GFQPQQTEQTLRQILQDVKAA-NAEP 102 (190)
T ss_dssp EEECCC--TTCCHHHHHHHHHH----HHHHHCCSEEEEECCTTTTSS-------SCCHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred EEecCC--CCchHHHHHHHHHH----HHHhcCCCEEEEEeecccccc-------CCCHHHHHHHHHHHHHHHHHc-CCCE
Confidence 356554 35444455555543 3456899999999997 4432 24555544 344444433 3455
Q ss_pred EEE
Q psy8282 553 ILA 555 (632)
Q Consensus 553 v~v 555 (632)
+++
T Consensus 103 il~ 105 (190)
T 1ivn_A 103 LLM 105 (190)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 30
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=40.50 E-value=63 Score=28.77 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=36.8
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHH----HHHHHHHHhcCCcE
Q psy8282 478 NVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYA----HFTHWLKALAQGRI 552 (632)
Q Consensus 478 ~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~----~~~~~l~~~a~grv 552 (632)
.+|.-. .|.+-.+.+..++.. +.+++||+|+|..|. |... ..+.+.|. ++.+.+++. +.++
T Consensus 41 v~n~g~--~G~~~~~~~~~~~~~----~~~~~pd~vvi~~G~ND~~~-------~~~~~~~~~~~~~~i~~~~~~-~~~v 106 (185)
T 3hp4_A 41 LINASI--SGETSGGALRRLDAL----LEQYEPTHVLIELGANDGLR-------GFPVKKMQTNLTALVKKSQAA-NAMT 106 (185)
T ss_dssp EEECCC--TTCCHHHHHHHHHHH----HHHHCCSEEEEECCHHHHHT-------TCCHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred EEECCc--CCccHHHHHHHHHHH----HhhcCCCEEEEEeecccCCC-------CcCHHHHHHHHHHHHHHHHHc-CCeE
Confidence 345555 355556666666553 456899999999996 5433 24455554 344444443 3355
Q ss_pred EEE
Q psy8282 553 ILA 555 (632)
Q Consensus 553 v~v 555 (632)
+++
T Consensus 107 vl~ 109 (185)
T 3hp4_A 107 ALM 109 (185)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 31
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=37.61 E-value=49 Score=30.72 Aligned_cols=59 Identities=14% Similarity=0.290 Sum_probs=39.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHHHHHHHHHhcCC-cEEE
Q psy8282 487 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKALAQG-RIIL 554 (632)
Q Consensus 487 g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~~~~~l~~~a~g-rvv~ 554 (632)
|..-.+.+..+++. +...+||+|+|..|. |...+. ..+.+.|..+.+.+++...+ ++++
T Consensus 65 G~~~~~~~~~l~~~----l~~~~pd~vvi~~G~ND~~~~~-----~~~~~~l~~li~~i~~~~p~~~ii~ 125 (215)
T 2vpt_A 65 GWTIPQIASNINNW----LNTHNPDVVFLWIGGNDLLLNG-----NLNATGLSNLIDQIFTVKPNVTLFV 125 (215)
T ss_dssp TCCHHHHHHHHHHH----HHHHCCSEEEEECCHHHHHHHC-----CCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred chhHHHHHHHHHHH----hhccCCCEEEEEccccccCCCC-----ChhHHHHHHHHHHHHHhCCCCEEEE
Confidence 45555666655543 346899999999997 554322 24578899999988886533 3443
No 32
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=32.31 E-value=46 Score=33.43 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCC
Q psy8282 491 PEYIAAFQQVILPIAYQFNPELVLVSAGYDACVND 525 (632)
Q Consensus 491 ~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~D 525 (632)
..+...+.+.|..++++++||+||.-.|.|.|-+-
T Consensus 130 ~~~~~~l~~~l~~~ir~~~PdvV~t~~~~d~HpDH 164 (273)
T 3dff_A 130 HDLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPDH 164 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHHH
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCCCCCChHH
Confidence 34566677777889999999999999888877653
No 33
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=31.20 E-value=52 Score=32.95 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCC
Q psy8282 490 DPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVND 525 (632)
Q Consensus 490 D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~D 525 (632)
+..+...+.+.|..++++++||+||.-.|.|.|-+-
T Consensus 126 ~~~~~~~~~~~l~~~ir~~~PdvV~t~~~~d~HpDH 161 (270)
T 3dfi_A 126 NHDLVAAIREDIESMIAECDPTLVLTCVAIGKHPDH 161 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCCEEEeCCCCCCChhH
Confidence 334556677778889999999999999888877654
No 34
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=30.91 E-value=1.9e+02 Score=26.51 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=40.3
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHHHHH-cCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHH----HHHHHHHhcCC
Q psy8282 477 FNVNVAWNKKGMSDPEYIAAFQQVILPIAYQ-FNPELVLVSAGY-DACVNDPLGGCKVSPEAYAH----FTHWLKALAQG 550 (632)
Q Consensus 477 ~~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~-f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~----~~~~l~~~a~g 550 (632)
..+|.-. .|..-...+..++++ +.. .+||+|+|..|. |.... +.-..+.+.|.. +.+.+++. +.
T Consensus 45 ~v~n~g~--~G~~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~~---~~~~~~~~~~~~~l~~~i~~~~~~-~~ 114 (240)
T 3mil_A 45 DILQRGF--KGYTSRWALKILPEI----LKHESNIVMATIFLGANDACSA---GPQSVPLPEFIDNIRQMVSLMKSY-HI 114 (240)
T ss_dssp EEEEEEC--TTCCHHHHHHHHHHH----HHHCCCEEEEEEECCTTTTSSS---STTCCCHHHHHHHHHHHHHHHHHT-TC
T ss_pred EEEecCc--CcccHHHHHHHHHHH----hcccCCCCEEEEEeecCcCCcc---CCCCCCHHHHHHHHHHHHHHHHHc-CC
Confidence 3466665 356666666666543 333 699999999998 65432 123456666654 33444433 34
Q ss_pred cEEEEe
Q psy8282 551 RIILAL 556 (632)
Q Consensus 551 rvv~vL 556 (632)
+++++.
T Consensus 115 ~vil~~ 120 (240)
T 3mil_A 115 RPIIIG 120 (240)
T ss_dssp EEEEEC
T ss_pred eEEEEc
Confidence 555553
No 35
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=28.90 E-value=1.9e+02 Score=25.33 Aligned_cols=67 Identities=13% Similarity=0.285 Sum_probs=38.7
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHHHHH-HHHHHHHhcCCcEEEE
Q psy8282 478 NVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAH-FTHWLKALAQGRIILA 555 (632)
Q Consensus 478 ~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~y~~-~~~~l~~~a~grvv~v 555 (632)
.+|.-. .|.+-.+.+..+++. +...+||+|||+.|. |... ....+.+.|.. +.+++..+.+.+++++
T Consensus 42 v~n~g~--~G~~~~~~~~~~~~~----~~~~~pd~vvi~~G~ND~~~-----~~~~~~~~~~~~l~~~i~~~~~~~vi~~ 110 (195)
T 1yzf_A 42 VINAGM--PGDTTEDGLKRLNKE----VLIEKPDEVVIFFGANDASL-----DRNITVATFRENLETMIHEIGSEKVILI 110 (195)
T ss_dssp EEEEEC--TTCCHHHHHHHHHHH----TGGGCCSEEEEECCTTTTCT-----TSCCCHHHHHHHHHHHHHHHCGGGEEEE
T ss_pred EEeCCC--CCCCHHHHHHHHHHh----hhhcCCCEEEEEeeccccCc-----cCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 356666 366555666655543 345899999999997 4431 12456776654 3333444333345544
No 36
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=28.41 E-value=44 Score=31.48 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=14.6
Q ss_pred hCCCCeEEEEeccccCCcce
Q psy8282 203 NHGLSRVLILDWDVHHGNGT 222 (632)
Q Consensus 203 ~~g~~rV~IvD~DvHHGnGT 222 (632)
+.| +||++||+|..+|+=+
T Consensus 29 ~~g-~~VlliD~D~~~~~l~ 47 (237)
T 1g3q_A 29 DRG-RKVLAVDGDLTMANLS 47 (237)
T ss_dssp HTT-CCEEEEECCTTSCCHH
T ss_pred hcC-CeEEEEeCCCCCCChh
Confidence 344 6999999999877643
No 37
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=28.27 E-value=37 Score=31.90 Aligned_cols=25 Identities=8% Similarity=0.072 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCCeEEEEeccccCCc
Q psy8282 194 SVAAKYALDNHGLSRVLILDWDVHHGN 220 (632)
Q Consensus 194 AIAa~~l~~~~g~~rV~IvD~DvHHGn 220 (632)
|+.+.+++.+.| +||++||+|.. |+
T Consensus 17 a~~LA~~la~~g-~~VlliD~D~~-~~ 41 (254)
T 3kjh_A 17 AAGLIKIMASDY-DKIYAVDGDPD-SC 41 (254)
T ss_dssp HHHHHHHHTTTC-SCEEEEEECTT-SC
T ss_pred HHHHHHHHHHCC-CeEEEEeCCCC-cC
Confidence 333334444555 89999999994 54
No 38
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=28.19 E-value=44 Score=32.14 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=15.8
Q ss_pred HHHhCCCCeEEEEeccccCCcce
Q psy8282 200 ALDNHGLSRVLILDWDVHHGNGT 222 (632)
Q Consensus 200 l~~~~g~~rV~IvD~DvHHGnGT 222 (632)
++.+.| +||++||+|..+||=+
T Consensus 26 ~la~~g-~~VlliD~D~~~~~l~ 47 (263)
T 1hyq_A 26 ALAQLG-HDVTIVDADITMANLE 47 (263)
T ss_dssp HHHHTT-CCEEEEECCCSSSSHH
T ss_pred HHHhCC-CcEEEEECCCCCCCcc
Confidence 333344 6999999999887643
No 39
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=27.81 E-value=45 Score=31.80 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=12.5
Q ss_pred CeEEEEeccccCCcc
Q psy8282 207 SRVLILDWDVHHGNG 221 (632)
Q Consensus 207 ~rV~IvD~DvHHGnG 221 (632)
+||++||+|..+||=
T Consensus 32 ~~VlliD~D~~~~~~ 46 (260)
T 3q9l_A 32 KKTVVIDFAIGLRNL 46 (260)
T ss_dssp CCEEEEECCCSSCCH
T ss_pred CcEEEEECCCCCCCh
Confidence 699999999877653
No 40
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=27.02 E-value=43 Score=32.36 Aligned_cols=26 Identities=15% Similarity=0.384 Sum_probs=17.4
Q ss_pred HHHhCCCCeEEEEeccccCCcceeeccc
Q psy8282 200 ALDNHGLSRVLILDWDVHHGNGTQAMFY 227 (632)
Q Consensus 200 l~~~~g~~rV~IvD~DvHHGnGTq~iF~ 227 (632)
++.+.| +||++||+|. +|+.+...+.
T Consensus 24 ~la~~G-~~VlliD~D~-q~~~~~~~~~ 49 (269)
T 1cp2_A 24 GLHAMG-KTIMVVGCDP-KADSTRLLLG 49 (269)
T ss_dssp HHHTTT-CCEEEEEECT-TSCSSHHHHT
T ss_pred HHHHCC-CcEEEEcCCC-CCCHHHHhcC
Confidence 333444 6999999996 5666665553
No 41
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=26.81 E-value=38 Score=31.83 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCCeeEEeeeccccCcc
Q psy8282 406 SVAAKYALDNHGLSRVLILDWDVHHGNG 433 (632)
Q Consensus 406 AIAa~~~~~~~g~~RVlIiD~DvHHGnG 433 (632)
|+...+++.+.| +||++||+|.. |+=
T Consensus 17 a~~LA~~la~~g-~~VlliD~D~~-~~l 42 (254)
T 3kjh_A 17 AAGLIKIMASDY-DKIYAVDGDPD-SCL 42 (254)
T ss_dssp HHHHHHHHTTTC-SCEEEEEECTT-SCH
T ss_pred HHHHHHHHHHCC-CeEEEEeCCCC-cCh
Confidence 333333444555 79999999995 553
No 42
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=26.79 E-value=1.6e+02 Score=28.34 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=30.3
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCC
Q psy8282 478 NVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGG 529 (632)
Q Consensus 478 ~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~ 529 (632)
.+|.-.+ |.+-.+.+..+++++ .. ...+||+|+|..|. |.....|++.
T Consensus 61 v~N~G~~--G~tt~~~~~~~~~~l-~~-~~~~pd~V~I~~G~ND~~~~~~~~~ 109 (274)
T 3bzw_A 61 PFVYGIS--GRQWDDVPRQAEKLK-KE-HGGEVDAILVFMGTNDYNSSVPIGE 109 (274)
T ss_dssp EEECCCT--TCCGGGHHHHHHHHH-HH-HTTTCCEEEEECCHHHHHTTCCCCC
T ss_pred EEEeecC--CCCHHHHHHHHHHHH-hc-cCCCCCEEEEEEecccCcccCCCcc
Confidence 3565553 444444666666532 11 23789999999998 8777666654
No 43
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=26.04 E-value=54 Score=31.61 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=18.5
Q ss_pred HHHHHhcCCCeeEEeeeccccCccchhccc
Q psy8282 410 KYALDNHGLSRVLILDWDVHHGNGTQAMFY 439 (632)
Q Consensus 410 ~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~ 439 (632)
..++.+.| +||++||+|. +++.+..++.
T Consensus 22 A~~la~~G-~~VlliD~D~-q~~~~~~~~~ 49 (269)
T 1cp2_A 22 TSGLHAMG-KTIMVVGCDP-KADSTRLLLG 49 (269)
T ss_dssp HHHHHTTT-CCEEEEEECT-TSCSSHHHHT
T ss_pred HHHHHHCC-CcEEEEcCCC-CCCHHHHhcC
Confidence 33333444 6999999996 5666766654
No 44
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=24.85 E-value=52 Score=30.90 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCCeeEEeeeccccCccc
Q psy8282 406 SVAAKYALDNHGLSRVLILDWDVHHGNGT 434 (632)
Q Consensus 406 AIAa~~~~~~~g~~RVlIiD~DvHHGnGT 434 (632)
|+...+++.+.| +||++||+|..+|+=+
T Consensus 20 a~~LA~~la~~g-~~VlliD~D~~~~~l~ 47 (237)
T 1g3q_A 20 TANLSVALGDRG-RKVLAVDGDLTMANLS 47 (237)
T ss_dssp HHHHHHHHHHTT-CCEEEEECCTTSCCHH
T ss_pred HHHHHHHHHhcC-CeEEEEeCCCCCCChh
Confidence 333333333444 6999999999887643
No 45
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=24.56 E-value=60 Score=30.57 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCCeEEEEeccccCCccee
Q psy8282 194 SVAAKYALDNHGLSRVLILDWDVHHGNGTQ 223 (632)
Q Consensus 194 AIAa~~l~~~~g~~rV~IvD~DvHHGnGTq 223 (632)
|+.+.+++.+..-+||++||+|...||=+.
T Consensus 22 a~~LA~~la~~~g~~VlliD~D~~~~~l~~ 51 (245)
T 3ea0_A 22 AANFAFALSQEPDIHVLAVDISLPFGDLDM 51 (245)
T ss_dssp HHHHHHHHTTSTTCCEEEEECCTTTCCGGG
T ss_pred HHHHHHHHHhCcCCCEEEEECCCCCCCHHH
Confidence 333333444441279999999998776543
No 46
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=24.01 E-value=55 Score=31.43 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCCeeEEeeeccccCccc
Q psy8282 406 SVAAKYALDNHGLSRVLILDWDVHHGNGT 434 (632)
Q Consensus 406 AIAa~~~~~~~g~~RVlIiD~DvHHGnGT 434 (632)
|+...+++.+.| +||++||+|..+||=+
T Consensus 20 a~~LA~~la~~g-~~VlliD~D~~~~~l~ 47 (263)
T 1hyq_A 20 TANLGVALAQLG-HDVTIVDADITMANLE 47 (263)
T ss_dssp HHHHHHHHHHTT-CCEEEEECCCSSSSHH
T ss_pred HHHHHHHHHhCC-CcEEEEECCCCCCCcc
Confidence 333333333444 6999999999887743
No 47
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=23.89 E-value=56 Score=31.13 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCCeeEEeeeccccCccch
Q psy8282 407 VAAKYALDNHGLSRVLILDWDVHHGNGTQ 435 (632)
Q Consensus 407 IAa~~~~~~~g~~RVlIiD~DvHHGnGTq 435 (632)
+....++.+.| +||++||+|..+++=+.
T Consensus 21 ~~LA~~la~~g-~~VlliD~D~~~~~~~~ 48 (260)
T 3q9l_A 21 AAIATGLAQKG-KKTVVIDFAIGLRNLDL 48 (260)
T ss_dssp HHHHHHHHHTT-CCEEEEECCCSSCCHHH
T ss_pred HHHHHHHHhCC-CcEEEEECCCCCCChhH
Confidence 33333333444 69999999998777443
No 48
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=23.47 E-value=65 Score=31.65 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=17.7
Q ss_pred HHHhcCCCeeEEeeeccccCccchhccc
Q psy8282 412 ALDNHGLSRVLILDWDVHHGNGTQAMFY 439 (632)
Q Consensus 412 ~~~~~g~~RVlIiD~DvHHGnGTq~iF~ 439 (632)
++.+.| +||++||+|.. ++.+..++.
T Consensus 25 ~La~~G-~rVlliD~D~q-~~~~~~~~~ 50 (289)
T 2afh_E 25 ALAEMG-KKVMIVGCDPK-ADSTRLILH 50 (289)
T ss_dssp HHHHTT-CCEEEEEECSS-SCSSHHHHC
T ss_pred HHHHCC-CeEEEEecCCC-CCHHHHhcC
Confidence 333444 69999999974 566666654
No 49
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=23.35 E-value=53 Score=32.29 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=15.0
Q ss_pred CeEEEEeccccCCcceeeccc
Q psy8282 207 SRVLILDWDVHHGNGTQAMFY 227 (632)
Q Consensus 207 ~rV~IvD~DvHHGnGTq~iF~ 227 (632)
.||++||+|. +++.+...+.
T Consensus 31 ~rVlliD~D~-q~~~~~~~~~ 50 (289)
T 2afh_E 31 KKVMIVGCDP-KADSTRLILH 50 (289)
T ss_dssp CCEEEEEECS-SSCSSHHHHC
T ss_pred CeEEEEecCC-CCCHHHHhcC
Confidence 6999999997 4666665553
No 50
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=23.25 E-value=42 Score=31.05 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=38.3
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCC-CCCCCCcCCCHHHHH----HHHHHHHHhcCCc
Q psy8282 478 NVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACV-NDPLGGCKVSPEAYA----HFTHWLKALAQGR 551 (632)
Q Consensus 478 ~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~-~Dplg~~~lt~~~y~----~~~~~l~~~a~gr 551 (632)
.+|.-. .|.+-.+.+..++..+++.+...+||+|+|+.|. |... .+ ....+.+.|. .+.+.+++. .+
T Consensus 59 v~n~g~--~G~t~~~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~~~~---~~~~~~~~~~~~l~~li~~l~~~--~~ 131 (218)
T 1vjg_A 59 YYNLGI--RRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTLENG---KPRVSIAETIKNTREILTQAKKL--YP 131 (218)
T ss_dssp EEEEEC--TTCCHHHHHHHHHHHHHTTCCTTSEEEEEEECCHHHHCEETT---EESSCHHHHHHHHHHHHHHHHHH--SC
T ss_pred EEeCCC--CCcCHHHHHHHhHHhhhhhhccCCCCEEEEEecCCcchhhcc---cccCCHHHHHHHHHHHHHHHHHh--Cc
Confidence 356665 3555556666555432221113599999999997 5541 11 1234555443 444555444 46
Q ss_pred EEEE
Q psy8282 552 IILA 555 (632)
Q Consensus 552 vv~v 555 (632)
++++
T Consensus 132 iil~ 135 (218)
T 1vjg_A 132 VLMI 135 (218)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 51
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=22.70 E-value=54 Score=33.90 Aligned_cols=25 Identities=40% Similarity=0.511 Sum_probs=18.4
Q ss_pred HHhcCCCeeEEeeeccccCccchhccc
Q psy8282 413 LDNHGLSRVLILDWDVHHGNGTQAMFY 439 (632)
Q Consensus 413 ~~~~g~~RVlIiD~DvHHGnGTq~iF~ 439 (632)
+.+.| +||++||+|.. +|.+..++.
T Consensus 26 LA~~G-~rVLlID~D~q-~~~~~~l~~ 50 (361)
T 3pg5_A 26 FALQG-KRVLYVDCDPQ-CNATQLMLT 50 (361)
T ss_dssp HHHTT-CCEEEEECCTT-CTTHHHHSC
T ss_pred HHhCC-CcEEEEEcCCC-CChhhhhcC
Confidence 33444 69999999977 788877653
No 52
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=22.55 E-value=1.3e+02 Score=28.09 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=36.2
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCCCcCCCHHH----HHHHHHHHHHhc-CCc
Q psy8282 478 NVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEA----YAHFTHWLKALA-QGR 551 (632)
Q Consensus 478 ~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg~~~lt~~~----y~~~~~~l~~~a-~gr 551 (632)
.+|.-. .|..-.+.+..+++. ++...+||+|||..|. |.. .+.+. |..+.+.+++.. +.+
T Consensus 67 v~n~g~--~G~t~~~~~~~~~~~---~l~~~~pd~vvi~~G~ND~~---------~~~~~~~~~l~~~i~~l~~~~p~~~ 132 (232)
T 1es9_A 67 ALNFGI--GGDSTQHVLWRLENG---ELEHIRPKIVVVWVGTNNHG---------HTAEQVTGGIKAIVQLVNERQPQAR 132 (232)
T ss_dssp EEEEEC--TTCCHHHHHHHHHTT---TTTTCCCSEEEEECCTTCTT---------SCHHHHHHHHHHHHHHHHHHSTTCE
T ss_pred eEEeec--ccccHHHHHHHHhcC---ccccCCCCEEEEEeecCCCC---------CCHHHHHHHHHHHHHHHHHHCCCCe
Confidence 356655 355555555555432 2345799999999997 543 44444 444555555543 234
Q ss_pred EEEE
Q psy8282 552 IILA 555 (632)
Q Consensus 552 vv~v 555 (632)
|+++
T Consensus 133 ii~~ 136 (232)
T 1es9_A 133 VVVL 136 (232)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5544
No 53
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=22.47 E-value=56 Score=32.31 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=15.4
Q ss_pred HHHhCCCCeEEEEeccccCCcce
Q psy8282 200 ALDNHGLSRVLILDWDVHHGNGT 222 (632)
Q Consensus 200 l~~~~g~~rV~IvD~DvHHGnGT 222 (632)
++.+.| +||++||+|..+|+=+
T Consensus 28 ~La~~G-~~VlliD~D~~q~~l~ 49 (286)
T 2xj4_A 28 ALLYGG-AKVAVIDLDLRQRTSA 49 (286)
T ss_dssp HHHHTT-CCEEEEECCTTTCHHH
T ss_pred HHHHCC-CcEEEEECCCCCCCHH
Confidence 333444 6999999999776644
No 54
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=21.67 E-value=41 Score=30.49 Aligned_cols=56 Identities=18% Similarity=0.225 Sum_probs=31.5
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-CCCCCCCCC---CcCCCHHHHHH
Q psy8282 478 NVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLG---GCKVSPEAYAH 539 (632)
Q Consensus 478 ~vNvPl~~~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf-Da~~~Dplg---~~~lt~~~y~~ 539 (632)
.+|.-. .|.+-.+.+..+.+ .+.+.+||+|+|..|. |.....+.+ ....+.+.|..
T Consensus 58 ~~n~g~--~G~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~ 117 (216)
T 3rjt_A 58 VVNVGT--SGNTVADVARRWED----DVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRD 117 (216)
T ss_dssp EEECCC--TTCCHHHHHHHHHH----HTGGGCCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHH
T ss_pred EEECCC--CCccHHHHHHHHHh----HHhhcCCCEEEEEeeccccchhhccccccccCCCHHHHHH
Confidence 356655 35544555554443 3346899999999997 554332111 12455666654
No 55
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=21.30 E-value=2.4e+02 Score=26.29 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=24.4
Q ss_pred HHHHcCC-CEEEEEcCC-CCCCCCCCCCcCCCHHHHH----HHHHHHHHh
Q psy8282 504 IAYQFNP-ELVLVSAGY-DACVNDPLGGCKVSPEAYA----HFTHWLKAL 547 (632)
Q Consensus 504 ~l~~f~P-dlIvvsAGf-Da~~~Dplg~~~lt~~~y~----~~~~~l~~~ 547 (632)
.+...+| |+|||..|. |.... ...+.+.|. ++.+.+++.
T Consensus 95 ~l~~~~p~d~VvI~~GtND~~~~-----~~~~~~~~~~~l~~li~~ir~~ 139 (232)
T 3dci_A 95 ALSCHMPLDLVIIMLGTNDIKPV-----HGGRAEAAVSGMRRLAQIVETF 139 (232)
T ss_dssp HHHHHCSCSEEEEECCTTTTSGG-----GTSSHHHHHHHHHHHHHHHHHC
T ss_pred HHhhCCCCCEEEEEeccCCCccc-----cCCCHHHHHHHHHHHHHHHHHh
Confidence 4567899 999999997 44432 234666554 444445443
No 56
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=20.59 E-value=52 Score=34.01 Aligned_cols=19 Identities=47% Similarity=0.592 Sum_probs=15.7
Q ss_pred CeEEEEeccccCCcceeecc
Q psy8282 207 SRVLILDWDVHHGNGTQAMF 226 (632)
Q Consensus 207 ~rV~IvD~DvHHGnGTq~iF 226 (632)
+||++||+|.. ||.+...+
T Consensus 31 ~rVLlID~D~q-~~~~~~l~ 49 (361)
T 3pg5_A 31 KRVLYVDCDPQ-CNATQLML 49 (361)
T ss_dssp CCEEEEECCTT-CTTHHHHS
T ss_pred CcEEEEEcCCC-CChhhhhc
Confidence 79999999976 77777665
Done!