RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8282
(632 letters)
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 174 bits (441), Expect = 2e-49
Identities = 118/248 (47%), Positives = 159/248 (64%), Gaps = 10/248 (4%)
Query: 374 NGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNG 433
+ E +G A++RPPGHHA+ GFC FN+V++A + S++LI+DWDVHHGNG
Sbjct: 140 SRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNG 199
Query: 434 TQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKK---GMSD 490
TQ FY DP VLYIS+HR+D G+FFP S VG G GEGFNVNVAW M D
Sbjct: 200 TQQTFYQDPSVLYISLHRHDDGNFFPGSGAV--DEVGAGSGEGFNVNVAWAGGLDPPMGD 257
Query: 491 PEYIAAFQQVILPIAYQFNPELVLVSAGYDACVND--PLGGCKVSPEAYAHFTHWLKALA 548
PEY+AAF+ V++PIA +F+P+LVLVSAG+DA PLGG VS + + + T L LA
Sbjct: 258 PEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLA 317
Query: 549 QGRIILALEGGYNISSISYAMTLCTKALLGDPL-PLLESDLD--INSSAVTSIKETISSH 605
G ++LALEGG+++++I A C ALLG+ + PL E N +A+ S++ I H
Sbjct: 318 GGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVH 377
Query: 606 KAYWSSLK 613
YW ++
Sbjct: 378 SKYWGCMQ 385
Score = 76.5 bits (187), Expect = 2e-15
Identities = 71/133 (53%), Positives = 90/133 (67%), Gaps = 5/133 (3%)
Query: 162 NGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNG 221
+ E +G A++RPPGHHA+ GFC FN+V++A + S++LI+DWDVHHGNG
Sbjct: 140 SRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNG 199
Query: 222 TQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKK---GMSD 278
TQ FY DP VLYIS+HR+D G+FFP S VG G GEGFNVNVAW M D
Sbjct: 200 TQQTFYQDPSVLYISLHRHDDGNFFPGSGAV--DEVGAGSGEGFNVNVAWAGGLDPPMGD 257
Query: 279 PEYIAAFQQVILP 291
PEY+AAF+ V++P
Sbjct: 258 PEYLAAFRIVVMP 270
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 140 bits (354), Expect = 2e-37
Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 8/219 (3%)
Query: 364 AWNKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLI 423
A +++G + HHA++DE GFC N+ + R+L
Sbjct: 105 ATITAAQCLIDGMCKVAI-NWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKF--ERILY 161
Query: 424 LDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAW 483
+D D+HHG+G + F +V+ +S+H++ G +VG GKG ++VNV
Sbjct: 162 VDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG---FFPGTGDVSDVGLGKGRYYSVNVPI 218
Query: 484 NKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHW 543
+ D +Y + V+ + FNP+ V++ G D DP+ ++P +
Sbjct: 219 QDG-IQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKY 277
Query: 544 LKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLP 582
+ ++ GGYN+++ + T T +LG L
Sbjct: 278 ILQWQ-LATLILGGGGYNLANTARCWTYLTGVILGKTLS 315
Score = 62.9 bits (152), Expect = 3e-11
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 8/159 (5%)
Query: 155 HVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDW 214
+++G + HHA++DE GFC N+ + R+L +D
Sbjct: 108 TAAQCLIDGMCKVAI-NWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKF--ERILYVDL 164
Query: 215 DVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKK 274
D+HHG+G + F +V+ +S+H++ G +VG GKG ++VNV
Sbjct: 165 DLHHGDGVEDAFSFTSKVMTVSLHKFSPG---FFPGTGDVSDVGLGKGRYYSVNVPIQDG 221
Query: 275 GMSDPEYIAAFQQVILPMYALDNHGLSRVLILDWDVHHG 313
+ D +Y + V+ +Y N VL L D G
Sbjct: 222 -IQDEKYYQICESVLKEVYQAFNPKAV-VLQLGADTIAG 258
Score = 44.4 bits (104), Expect = 3e-05
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 298 HGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGE 357
R+L +D D+HHG+G + F +V+ +S+H++ G +VG GKG
Sbjct: 154 RKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG---FFPGTGDVSDVGLGKGR 210
Query: 358 GFNVNVAWNKVVD 370
++VNV +
Sbjct: 211 YYSVNVPIQDGIQ 223
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 131 bits (329), Expect = 6e-34
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 7/223 (3%)
Query: 362 NVAWNKVVDSVLNGESAHGVAIIRPPGHH--AEQDEPCGFCIFNNVSVAAKYALDNHGLS 419
+ E G P G A + GFC NN L G
Sbjct: 101 GSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNP-AVGIEYLRKKGFK 159
Query: 420 RVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNV 479
R+L +D D HH +G Q FY+ +V +S+H+ +F +GEGKG+G+N+
Sbjct: 160 RILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGF--LEEIGEGKGKGYNL 217
Query: 480 NVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAH 539
N+ K ++D E++ A ++ + + F PE+ L+ G D + D L +S A+
Sbjct: 218 NIPLPKG-LNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLK 276
Query: 540 FTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLP 582
+ ++ + G + GGY+ +++ A TL L G +P
Sbjct: 277 AFNIVREVF-GEGVYLGGGGYHPYALARAWTLIWCELSGREVP 318
Score = 58.3 bits (140), Expect = 9e-10
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Query: 146 YVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHG 205
+ V ++ + HHA + GFC NN L G
Sbjct: 99 FTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNP-AVGIEYLRKKG 157
Query: 206 LSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGF 265
R+L +D D HH +G Q FY+ +V +S+H+ +F +GEGKG+G+
Sbjct: 158 FKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGF--LEEIGEGKGKGY 215
Query: 266 NVNVAWNKKGMSDPEYIAAFQQVILPM 292
N+N+ K ++D E++ A ++ + +
Sbjct: 216 NLNIPLPKG-LNDNEFLFALEKSLEIV 241
Score = 45.3 bits (106), Expect = 2e-05
Identities = 25/127 (19%), Positives = 42/127 (33%)
Query: 265 FNVNVAWNKKGMSDPEYIAAFQQVILPMYALDNHGLSRVLILDWDVHHGNGTQAMFYNDP 324
FN + S + + L G R+L +D D HH +G Q FY+
Sbjct: 123 FNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTD 182
Query: 325 RVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKVVDSVLNGESAHGVAII 384
+V +S+H+ +F G+GKG N+ + + L +
Sbjct: 183 QVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVK 242
Query: 385 RPPGHHA 391
Sbjct: 243 EVFEPEV 249
>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase
33, UBP33 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 56.5 bits (136), Expect = 1e-10
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 19 VRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYV--DNHL 62
V CG +HS +H T+H L ++ L VWCY C V D L
Sbjct: 47 VGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKL 92
Score = 40.7 bits (95), Expect = 3e-05
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 83 TEHPLALSFADLSVWCYVCEAYV--DNHL 109
T+H L ++ L VWCY C V D L
Sbjct: 64 TKHYLTVNLTTLRVWCYACSKEVFLDRKL 92
Score = 33.0 bits (75), Expect = 0.016
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 130 TEHPLALSFADLSVWGYVCEPYV 152
T+H L ++ L VW Y C V
Sbjct: 64 TKHYLTVNLTTLRVWCYACSKEV 86
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 102
Score = 48.5 bits (115), Expect = 9e-08
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 21 CGRYIEEHSMLHGVSTEHPLALSF--ADLSVWCYVCEAYVDNHLLA 64
C +H+ H +T HP+ + + WCYV E D
Sbjct: 46 CDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCYVDEVMFDLSDRM 91
Score = 34.2 bits (78), Expect = 0.007
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 83 TEHPLALSF--ADLSVWCYVCEAYVDNHLLA 111
T HP+ + + WCYV E D
Sbjct: 61 TGHPIIEGYDPPEGWGWCYVDEVMFDLSDRM 91
Score = 28.4 bits (63), Expect = 0.78
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 130 TEHPLALSF--ADLSVWGYVCEPYVDN 154
T HP+ + + W YV E D
Sbjct: 61 TGHPIIEGYDPPEGWGWCYVDEVMFDL 87
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase
5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 41.9 bits (98), Expect = 2e-05
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 19 VRCGRYI------EEHSMLHGVSTEHPLALSFADLS-----VWCYVCEAYVDNHLLA 64
+ CGR H++ H T +PLA+ ++ V+ Y + V + LA
Sbjct: 45 ILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLA 101
Score = 31.9 bits (72), Expect = 0.067
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 83 TEHPLALSFADLS-----VWCYVCEAYVDNHLLA 111
T +PLA+ ++ V+ Y + V + LA
Sbjct: 68 TGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLA 101
>d1iqca1 a.3.1.5 (A:1-150) Di-heme cytochrome c peroxidase
{Nitrosomonas europaea [TaxId: 915]}
Length = 150
Score = 29.7 bits (66), Expect = 0.59
Identities = 9/71 (12%), Positives = 16/71 (22%)
Query: 236 SVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYAL 295
S H G + G +N + N D +Q P+
Sbjct: 41 SCHNLSMGGTDNITTSIGHKWQQGPINAPTVLNSSMNLAQFWDGRAKDLKEQAAGPIANP 100
Query: 296 DNHGLSRVLIL 306
+ +
Sbjct: 101 KEMASTHEIAE 111
Score = 26.3 bits (57), Expect = 8.1
Identities = 11/58 (18%), Positives = 15/58 (25%)
Query: 448 SVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIA 505
S H G + G +N + N D +Q PIA
Sbjct: 41 SCHNLSMGGTDNITTSIGHKWQQGPINAPTVLNSSMNLAQFWDGRAKDLKEQAAGPIA 98
>d1vlba1 a.56.1.1 (A:81-193) Aldehyde oxidoreductase, domain 2
{Desulfovibrio gigas [TaxId: 879]}
Length = 113
Score = 28.6 bits (63), Expect = 0.86
Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 177 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPR 231
H Q CGFC + A N SR + DW H N + Y
Sbjct: 15 HGGAQ---CGFCSPGFIVSAKGLLDTNADPSREDVRDWFQKHRNACRCTGYKPLV 66
Score = 28.6 bits (63), Expect = 0.86
Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 389 HHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPR 443
H Q CGFC + A N SR + DW H N + Y
Sbjct: 15 HGGAQ---CGFCSPGFIVSAKGLLDTNADPSREDVRDWFQKHRNACRCTGYKPLV 66
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 126
Score = 26.6 bits (58), Expect = 4.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 486 KGMSDPEYIAAFQQVILPIAYQFNPELVL 514
KG+ P +A Q VI+P+ ++ ++V+
Sbjct: 1 KGLILPPIVAPIQVVIVPLIFKGKEDIVM 29
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase
{Streptomyces peucetius [TaxId: 1950]}
Length = 253
Score = 27.3 bits (59), Expect = 5.1
Identities = 12/97 (12%), Positives = 28/97 (28%), Gaps = 5/97 (5%)
Query: 356 GEGFNVNVAWNKVVDSVLNGES----AHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKY 411
++++ ++ D++ G +G + + + VA
Sbjct: 12 QAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDA 71
Query: 412 ALDNHGLSRV-LILDWDVHHGNGTQAMFYNDPRVLYI 447
+ + V +LD G A+ P V
Sbjct: 72 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSAT 108
>d1r4qa_ d.165.1.2 (A:) Shiga toxin, A-chain {Shigella dysenteriae,
toxin I [TaxId: 622]}
Length = 289
Score = 26.8 bits (59), Expect = 8.0
Identities = 10/72 (13%), Positives = 17/72 (23%)
Query: 184 PCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHG 243
P S+ + L V + D G + LY++
Sbjct: 27 PLQTISSGGTSLLMIDSGTGDNLFAVDVRGIDPEEGRFNNLRLIVERNNLYVTGFVNRTN 86
Query: 244 SFFPHSKDAGPH 255
+ F D
Sbjct: 87 NVFYRFADFSHV 98
Score = 26.8 bits (59), Expect = 8.0
Identities = 10/72 (13%), Positives = 17/72 (23%)
Query: 396 PCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHG 455
P S+ + L V + D G + LY++
Sbjct: 27 PLQTISSGGTSLLMIDSGTGDNLFAVDVRGIDPEEGRFNNLRLIVERNNLYVTGFVNRTN 86
Query: 456 SFFPHSKDAGPH 467
+ F D
Sbjct: 87 NVFYRFADFSHV 98
>d1qipa_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 176
Score = 26.5 bits (57), Expect = 8.4
Identities = 16/117 (13%), Positives = 28/117 (23%), Gaps = 3/117 (2%)
Query: 277 SDPEYIAAFQQVILPM---YALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHR 333
DP+ F +L M D + L + + L
Sbjct: 32 KDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATL 91
Query: 334 YDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKVVDSVLNGESAHGVAIIRPPGHH 390
++ + ++ G GF V S GV ++ P
Sbjct: 92 ELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDG 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.444
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,502,216
Number of extensions: 120197
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 31
Length of query: 632
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 541
Effective length of database: 1,158,166
Effective search space: 626567806
Effective search space used: 626567806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)