BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8283
(285 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q61550|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus
GN=Rad21 PE=1 SV=3
Length = 635
Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/280 (48%), Positives = 171/280 (61%), Gaps = 20/280 (7%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
+P+++ + SL + + +E G + L F + R I + F+D
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180
Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNL-NADAPHMFGLKLFDDTPIG 230
++L + +P Q S+ MN +E + N + + KL + G
Sbjct: 181 DMLVSTSASNLLLEPEQSTSNLNEKMNHLEYEDQYKDDNFGEGNDGGILDDKLISNND-G 239
Query: 231 GVDMNEPPAPPSVPPPAPES--------DDDDHFGGPASP 262
G+ ++PPA PE DD+ GGP SP
Sbjct: 240 GI-FDDPPALSEAGVMLPEQPAHDDMDEDDNGSLGGPDSP 278
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPIPARALFK 169
LAPPTK+LM WKE+GGVEKLF LP +P+ L K
Sbjct: 353 LAPPTKKLMMWKETGGVEKLFFLPAQPLWNNRLLK 387
>sp|Q3SWX9|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus
GN=RAD21 PE=2 SV=1
Length = 630
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/280 (48%), Positives = 174/280 (62%), Gaps = 20/280 (7%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
+P+++ + SL + + +E G + L F + R I + F+D
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180
Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNL-NADAPHMFGLKLFDDTPIG 230
++L G + +P Q S+ +N +E + N + + KL + G
Sbjct: 181 DMLASTGASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNND-G 239
Query: 231 GVDMNEPPAPPSVPPPAPES------DDDDH--FGGPASP 262
G+ ++PPA PE D+DD+ GGP SP
Sbjct: 240 GI-FDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSP 278
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPIPARALFK 169
LAPPTK+LM WKE+GGVEKLF+LP +P+ L K
Sbjct: 353 LAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLK 387
>sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens
GN=RAD21 PE=1 SV=2
Length = 631
Score = 231 bits (589), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/280 (47%), Positives = 172/280 (61%), Gaps = 20/280 (7%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
+P+++ + SL + + +E G + L F + R I + F+D
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180
Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNL-NADAPHMFGLKLFDDTPIG 230
++L + + Q S+ +N +E + N + + KL + G
Sbjct: 181 DMLVSTTTSNLLLESEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNND-G 239
Query: 231 GVDMNEPPAPPSVPPPAPES------DDDDH--FGGPASP 262
G+ ++PPA PE D+DD+ GGP SP
Sbjct: 240 GI-FDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSP 278
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPIPARALFK 169
LAPPTK+LM WKE+GGVEKLF+LP +P+ L K
Sbjct: 353 LAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLK 387
>sp|O93310|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis
GN=rad21 PE=1 SV=1
Length = 629
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/127 (79%), Positives = 116/127 (91%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSV 127
+P+++ +
Sbjct: 121 LPDLDDI 127
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPIPARALFK 169
LAPPTK+LM WKE+GGVEKLF+LP +P+ L K
Sbjct: 351 LAPPTKKLMMWKETGGVEKLFSLPAQPLWNTRLLK 385
>sp|D2HSB3|RD21L_AILME Double-strand-break repair protein rad21-like protein 1
OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1
Length = 554
Score = 199 bits (505), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 106/119 (89%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E +++ IL KVK+ALRTSGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKIALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFET 119
LGVVRIY+RKAKYLLADCNEA +K+KM FRPG+VDLP++N EAA NAITLPE FHDF+T
Sbjct: 61 LGVVRIYNRKAKYLLADCNEALLKMKMTFRPGLVDLPKENFEAAYNAITLPEEFHDFDT 119
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 132 VKSLAPPTKRLMHWKESGGVEKLFALPGRPIPARAL 167
V LAPPT+RLM WK+ GGV+ L + + + L
Sbjct: 322 VLELAPPTQRLMMWKKKGGVDTLLSTAAQDLTHAEL 357
>sp|Q9H4I0|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo
sapiens GN=RAD21L1 PE=2 SV=3
Length = 556
Score = 198 bits (503), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 122/261 (46%), Positives = 155/261 (59%), Gaps = 30/261 (11%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E +++ IL PKVK+ALRTSGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY+RKAKYLLADC+EAF+K+KM F PG+VDLP++N EA+ NAITLPE FHDF+T
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPEEFHDFDTQ 120
Query: 121 MPEINSVQFEPVKSLAPPTK---------RLMHWKESGGVEKLFALPGRPIPARALFKDA 171
V ++ + P + L+ ES G E + + F D
Sbjct: 121 NMNAIDVSEHFTQNQSRPEEITLRENFDNDLIFQAESFGEE------SEILRRHSFFDDN 174
Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEI---DGDAFSGNLNADAPHMFGLKLFDDTP 228
LL GPL SS S+ + + GD F G+ A A M L DD
Sbjct: 175 ILLNSSGPL--------IEHSSGSLTGERSLFYDSGDGF-GDEGA-AGEMIDNLLQDDQN 224
Query: 229 IGGVDM--NEPPAPPSVPPPA 247
I DM N + PS PP +
Sbjct: 225 ILLEDMHLNREISLPSEPPNS 245
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 132 VKSLAPPTKRLMHWKESGGVEKLFALPGRPI 162
V LAPPT+RLM WK+ GGV L + + +
Sbjct: 324 VLELAPPTQRLMMWKKRGGVHTLLSTAAQDL 354
>sp|A2AU37|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus
musculus GN=Rad21l1 PE=1 SV=2
Length = 552
Score = 197 bits (500), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 105/118 (88%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E ++ I+ PKVK+ALRTSGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFE 118
LGVVRIY+RKAKYLLADC+EAF+K+KM FRPG+VDLP++N EAA N ITLPE FHDFE
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFRPGLVDLPKENFEAAYNTITLPEEFHDFE 118
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 132 VKSLAPPTKRLMHWKESGGVEKLFA 156
V LAPPT+RLM WK+ GGV+ L +
Sbjct: 323 VLDLAPPTQRLMMWKKRGGVDMLLS 347
>sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad21 PE=1 SV=1
Length = 628
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 94/134 (70%), Gaps = 11/134 (8%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVK-MALRTSGHL 59
MFY++ +L+KKGPLA++WLAAHW+KKL+K T+IE+SV I+ + MALR SG L
Sbjct: 1 MFYSEAILSKKGPLAKVWLAAHWEKKLSKVQTLHTSIEQSVHAIVTEETAPMALRLSGQL 60
Query: 60 LLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPE--------DNREAAVNA--IT 109
+LGVVRIYSRKA+YLL DC EA +++KM+F+PG VD+ E ++A + +T
Sbjct: 61 MLGVVRIYSRKARYLLEDCTEALMRLKMSFQPGQVDMIEPATALQSLKGKDAVTQSANLT 120
Query: 110 LPEVFHDFETTMPE 123
LPE +F+ +P+
Sbjct: 121 LPETITEFDLLVPD 134
>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana
GN=SYN3 PE=2 SV=2
Length = 693
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 74/115 (64%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY+ +LA+KGPL +W AAH ++L K+ NI +VD I+ P+V +ALRTS HLL
Sbjct: 1 MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFH 115
+GVVRIYS+K YL D N + AF V+LPED R+A ++TLP+ +
Sbjct: 61 VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALN 115
>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana
GN=SYN2 PE=2 SV=2
Length = 810
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVK-MALRTSGHL 59
MFY+ ++++KGPL IW+AA++ KKL K+ V T+I SVD ILQ ++ + R +L
Sbjct: 1 MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60
Query: 60 LLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFET 119
LLGVVRIYS+K +L DCN+A + +K E NRE ++LP F
Sbjct: 61 LLGVVRIYSKKVDFLFDDCNKALIGVKEFV------AKERNREKT--GVSLPASIECFSI 112
Query: 120 TMPE 123
+PE
Sbjct: 113 ALPE 116
>sp|Q9S7T7|SCC11_ARATH Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana
GN=SYN1 PE=2 SV=2
Length = 627
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 7 VLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLLLGVVRI 66
+LA+K PL +IW+AA K+ + + + +I + + IL P V MALR SG L+ GVV +
Sbjct: 17 LLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVIV 76
Query: 67 YSRKAKYLLADCNEAFVKIKMAFR----PGMVDLPEDNREAAVNAITLPEV----FHDFE 118
Y RK K L D N V+I A+R P LP+ A A+TLPE F DFE
Sbjct: 77 YERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDFE 136
Query: 119 TT 120
T
Sbjct: 137 QT 138
>sp|Q12158|SCC1_YEAST Sister chromatid cohesion protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MCD1 PE=1 SV=1
Length = 566
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 9 AKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQP---------KVKMALRTSGHL 59
KGPLA+IWLA++ + + V +T+I +S I + + LRTSG L
Sbjct: 16 TNKGPLAQIWLASNM-SNIPRGSVIQTHIAESAKEIAKASGCDDESGDNEYITLRTSGEL 74
Query: 60 LLGVVRIYSRKAKYLLADCNEAFVKIKMAFR 90
L G+VR+YS++A +LL D + KI M F+
Sbjct: 75 LQGIVRVYSKQATFLLTDIKDTLTKISMLFK 105
>sp|O95072|REC8_HUMAN Meiotic recombination protein REC8 homolog OS=Homo sapiens GN=REC8
PE=2 SV=1
Length = 547
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 19/133 (14%)
Query: 1 MFYAQFVLAK-KGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQ------------- 46
MFY VL + G A IWLAA +L K N+ K+ + IL
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLRVNVVKTCEEILNYVLVRVQPPQPGL 60
Query: 47 PKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVN 106
P+ + +L S L +GV+R+YS++ +YL+ D ++ A +D+ E +
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYSQQCQYLVEDIQHILERLHRAQLQIRIDM-----ETELP 115
Query: 107 AITLPEVFHDFET 119
++ LP ET
Sbjct: 116 SLLLPNHLAMMET 128
>sp|Q6AYJ4|REC8_RAT Meiotic recombination protein REC8 homolog OS=Rattus norvegicus
GN=Rec8 PE=1 SV=1
Length = 593
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 1 MFYAQFVLAK-KGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQ------------- 46
MFY VL + G A IWLAA +L K + N+ K+ + IL
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLKVNVVKTCEEILNYVLVRVQPPMPGL 60
Query: 47 PKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVN 106
P+ + +L S L +GV+R+Y ++ +YL+ D + A +D+ EA +
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYFQQCQYLVEDIQHILEHLHRAQLRIRIDM----EEADLP 116
Query: 107 AITLPEVFHDFET 119
++ LP ET
Sbjct: 117 SLLLPNCLAMMET 129
>sp|Q8C5S7|REC8_MOUSE Meiotic recombination protein REC8 homolog OS=Mus musculus GN=Rec8
PE=1 SV=1
Length = 591
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Query: 1 MFYAQFVLAK-KGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQ------------- 46
MFY VL + G A IWLAA +L K N+ K+ + IL
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLNVNVVKTCEEILNYVLVRVQPPVAGL 60
Query: 47 PKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVN 106
P+ + +L S L +GV+R+Y ++ +YL+ D + A + + D EA +
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYFQQCQYLVEDIQHILEHLHRA----QLRIRIDMEEADLP 116
Query: 107 AITLPEVFHDFET 119
++ LP ET
Sbjct: 117 SLLLPNCLAMMET 129
>sp|P36626|REC8_SCHPO Meiotic recombination protein rec8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rec8 PE=1 SV=2
Length = 561
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 1 MFYAQFVLAK-KGPLARIWLAA-----HWDKKLTKAHVFETNIEKSVDGILQPKVKMALR 54
MFY Q VL K KG + IWLAA H +KL K + +I+++ D + +ALR
Sbjct: 1 MFYNQDVLTKEKGGMGVIWLAATLGSKHSLRKLHKKDIMSVDIDEACDFVAFSPEPLALR 60
Query: 55 TSGHLLLGVVRIYSRKAKYLLADCNEAFVKIK 86
S +L++GV R+++ + + + + ++++
Sbjct: 61 LSSNLMIGVTRVWAHQYSFFHSQVSTLHLRVR 92
>sp|Q12188|REC8_YEAST Meiotic recombination protein REC8 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=REC8 PE=1 SV=1
Length = 680
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 27 LTKAHVFETNIEKSVDGILQPKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIK 86
+ K + +I K+ D I + +LR +LL GV Y++K +Y+L D N V+++
Sbjct: 53 VKKKDIVNISIPKTCDEIQNFENDFSLRYISNLLYGVTICYNKKTEYVLNDLNHLLVQLQ 112
>sp|B6YRS4|SYL_AZOPC Leucine--tRNA ligase OS=Azobacteroides pseudotrichonymphae
genomovar. CFP2 GN=leuS PE=3 SV=1
Length = 918
Score = 31.6 bits (70), Expect = 6.8, Method: Composition-based stats.
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 11/168 (6%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK----VKMALRTS 56
++ + ++LA G A + + AH + A F+ I ++ I K +K + T+
Sbjct: 376 IWISDYILADYGTGAVMAVPAHDSRDYAFAKHFDLPIIPLIEDIDISKESFDIKEGIMTN 435
Query: 57 GHLLLGV-VRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREA----AVNAITLP 111
L G+ V+ +K K + D N +K+ R + E N I
Sbjct: 436 SDFLNGLSVKQAIQKVKEYIKDENLGKIKVNYRLRDAIFSRQRYWGEPFPIYYKNGIPYA 495
Query: 112 EVFHDFETTMPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFALPG 159
D +PEI+ +F P ++ PP R +W G +L +PG
Sbjct: 496 VDEEDLPIKLPEID--KFLPAETGKPPLGRAKNWTYKGYPLELTTMPG 541
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,786,570
Number of Sequences: 539616
Number of extensions: 5257001
Number of successful extensions: 25227
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 24795
Number of HSP's gapped (non-prelim): 363
length of query: 285
length of database: 191,569,459
effective HSP length: 116
effective length of query: 169
effective length of database: 128,974,003
effective search space: 21796606507
effective search space used: 21796606507
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)