Query psy8283
Match_columns 285
No_of_seqs 191 out of 343
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 23:32:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ew4_A CYAY protein; friedreic 31.2 3.9 0.00013 32.5 -2.5 21 4-24 47-67 (106)
2 3t3l_A Frataxin, mitochondrial 25.4 5.8 0.0002 32.7 -2.5 20 4-23 60-79 (129)
3 4h62_V Mediator of RNA polymer 22.2 39 0.0013 21.4 1.5 23 61-83 4-26 (31)
4 3oeq_A Frataxin homolog, mitoc 21.7 8.5 0.00029 31.7 -2.2 19 4-22 66-84 (123)
5 4gyx_A Type III collagen fragm 12.1 2.4E+02 0.0082 17.7 3.3 14 252-265 13-26 (31)
6 3dex_A SAV_2001; alpha-beta pr 6.6 4.1E+02 0.014 21.1 3.5 28 62-90 14-41 (107)
7 2ojl_A Hypothetical protein; B 6.2 4.5E+02 0.015 20.9 3.5 28 62-90 10-37 (108)
8 2fa8_A Hypothetical protein AT 6.1 4.6E+02 0.016 20.5 3.5 28 63-91 10-37 (105)
9 2oqo_A Penicillin-binding prot 6.0 1.2E+02 0.0043 26.3 0.1 25 13-37 94-118 (200)
10 3hzs_A Monofunctional glycosyl 5.6 1.5E+02 0.0052 26.0 0.4 23 13-35 94-116 (209)
No 1
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=31.17 E-value=3.9 Score=32.54 Aligned_cols=21 Identities=24% Similarity=0.749 Sum_probs=17.8
Q ss_pred chhhhhccCChhhHHHhhhcc
Q psy8283 4 AQFVLAKKGPLARIWLAAHWD 24 (285)
Q Consensus 4 S~~lLskkgpLa~IWLAAt~~ 24 (285)
++.|++|+.|+.+|||||-.+
T Consensus 47 ~~~VINkQ~P~~QIWlaSp~s 67 (106)
T 1ew4_A 47 SKIIINRQEPLHQVWLATKQG 67 (106)
T ss_dssp CEEEEEEETTTTEEEEECSSC
T ss_pred CEEEEeCCchhhhheEecCCC
Confidence 456889999999999999763
No 2
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=25.36 E-value=5.8 Score=32.71 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=17.6
Q ss_pred chhhhhccCChhhHHHhhhc
Q psy8283 4 AQFVLAKKGPLARIWLAAHW 23 (285)
Q Consensus 4 S~~lLskkgpLa~IWLAAt~ 23 (285)
++.|++|+.|+.+|||||-.
T Consensus 60 g~~VINkQ~P~~QIWLASp~ 79 (129)
T 3t3l_A 60 GTYVINKQTPNKAIWLSSPS 79 (129)
T ss_dssp CEEEEEEETTTTEEEEECSS
T ss_pred CEEEEeCCchhhHhheeCCC
Confidence 56788999999999999974
No 3
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=22.16 E-value=39 Score=21.40 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=15.3
Q ss_pred cceEEEEecchhHHHHHHHHHHH
Q psy8283 61 LGVVRIYSRKAKYLLADCNEAFV 83 (285)
Q Consensus 61 lGVVRIYsrKv~YLl~Dc~~~l~ 83 (285)
.||.|.-.+|++-|++.|-+.+.
T Consensus 4 sgvtrfdekqieelldncietfv 26 (31)
T 4h62_V 4 SGVTRFDEKQIEELLDNCIETFV 26 (31)
T ss_dssp ------CHHHHHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHHHHHH
Confidence 48999999999999999988765
No 4
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=21.68 E-value=8.5 Score=31.65 Aligned_cols=19 Identities=37% Similarity=0.788 Sum_probs=16.8
Q ss_pred chhhhhccCChhhHHHhhh
Q psy8283 4 AQFVLAKKGPLARIWLAAH 22 (285)
Q Consensus 4 S~~lLskkgpLa~IWLAAt 22 (285)
++.|++|+.|..+|||||-
T Consensus 66 ~~~VINkQ~P~~QIWlaSp 84 (123)
T 3oeq_A 66 GTYVINKQPPNKQIWLASP 84 (123)
T ss_dssp CCEEEECCCSSSCCEEEET
T ss_pred CEEEEeCCChhhHHheecC
Confidence 4678899999999999996
No 5
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=12.10 E-value=2.4e+02 Score=17.74 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCC
Q psy8283 252 DDDHFGGPASPMGH 265 (285)
Q Consensus 252 ~~~~~~~p~s~~~~ 265 (285)
+-+.|-|||.|+|.
T Consensus 13 gvmgfpgppgppgp 26 (31)
T 4gyx_A 13 GVMGFPGPPGPPGP 26 (31)
T ss_dssp CCCCCCCCCCCCCC
T ss_pred ccccCCCCCCCCCC
Confidence 67788888887763
No 6
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=6.57 E-value=4.1e+02 Score=21.11 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=22.4
Q ss_pred ceEEEEecchhHHHHHHHHHHHHHHHHhc
Q psy8283 62 GVVRIYSRKAKYLLADCNEAFVKIKMAFR 90 (285)
Q Consensus 62 GVVRIYsrKv~YLl~Dc~~~l~kik~afr 90 (285)
=|.+.|..+|+|++. +..+...|...|.
T Consensus 14 ~V~I~YC~~C~w~lR-a~~laqeLl~tF~ 41 (107)
T 3dex_A 14 RVQIEYCTQCRWLPR-AAWLAQELLTTFE 41 (107)
T ss_dssp EEEEEEETTTTCHHH-HHHHHHHHHHHST
T ss_pred EEEEEECCCCCChHH-HHHHHHHHHHhcc
Confidence 366779999999997 7777777887884
No 7
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=6.18 E-value=4.5e+02 Score=20.85 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=23.0
Q ss_pred ceEEEEecchhHHHHHHHHHHHHHHHHhc
Q psy8283 62 GVVRIYSRKAKYLLADCNEAFVKIKMAFR 90 (285)
Q Consensus 62 GVVRIYsrKv~YLl~Dc~~~l~kik~afr 90 (285)
=|.+.|..+|+|++. +..+...|...|.
T Consensus 10 ~V~I~YC~~C~w~lR-a~~laqeLl~tF~ 37 (108)
T 2ojl_A 10 RIAIQYCTQCQWLLR-AAWMAQELLSTFG 37 (108)
T ss_dssp EEEEEEETTTTCHHH-HHHHHHHHHHHHG
T ss_pred EEEEEECCCCCChHH-HHHHHHHHHHhcC
Confidence 378889999999996 7777777888885
No 8
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=6.13 E-value=4.6e+02 Score=20.52 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=24.0
Q ss_pred eEEEEecchhHHHHHHHHHHHHHHHHhcC
Q psy8283 63 VVRIYSRKAKYLLADCNEAFVKIKMAFRP 91 (285)
Q Consensus 63 VVRIYsrKv~YLl~Dc~~~l~kik~afr~ 91 (285)
|.+.|..+|+|++. +..+...|...|..
T Consensus 10 V~I~YC~~C~~~~R-a~~laqeLl~tF~~ 37 (105)
T 2fa8_A 10 IAIRYCTQCNWLLR-AGWMAQEILQTFAS 37 (105)
T ss_dssp EEEEEETTTTCHHH-HHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHH-HHHHHHHHHHHcCc
Confidence 77889999999998 88888888888843
No 9
>2oqo_A Penicillin-binding protein 1A (PBP-1A) (PBP1A); transferase; HET: EPE CPS; 2.10A {Aquifex aeolicus} SCOP: d.2.1.10 PDB: 3d3h_A* 3nb7_A 3nb6_A
Probab=5.99 E-value=1.2e+02 Score=26.25 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=20.6
Q ss_pred ChhhHHHhhhccCccchhhhhccCH
Q psy8283 13 PLARIWLAAHWDKKLTKAHVFETNI 37 (285)
Q Consensus 13 pLa~IWLAAt~~kKLsKk~Il~vdI 37 (285)
.+..+|+|--+++++||++|++.=+
T Consensus 94 K~~E~~~A~~lE~~~sK~eILe~YL 118 (200)
T 2oqo_A 94 KIKEALLAIKIERTFDKKKIMELYL 118 (200)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 3667899999999999999987644
No 10
>3hzs_A Monofunctional glycosyltransferase; transglycosylase, peptidoglycan, moenomycin, membrane, cell shape; HET: M0E; 2.10A {Staphylococcus aureus subsp} SCOP: d.2.1.0
Probab=5.56 E-value=1.5e+02 Score=26.03 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=19.5
Q ss_pred ChhhHHHhhhccCccchhhhhcc
Q psy8283 13 PLARIWLAAHWDKKLTKAHVFET 35 (285)
Q Consensus 13 pLa~IWLAAt~~kKLsKk~Il~v 35 (285)
.+..+|+|.-+++++||++|++.
T Consensus 94 K~~E~~lA~~lE~~~sK~eILe~ 116 (209)
T 3hzs_A 94 KVKELFVAHRVEKQYNKNEILSF 116 (209)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHH
Confidence 36778999999999999998865
Done!