Query psy8283
Match_columns 285
No_of_seqs 191 out of 343
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 23:32:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8283.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8283hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ew4a_ d.82.2.1 (A:) CyaY {Es 25.7 2.6 0.00019 31.6 -2.5 21 4-24 47-67 (106)
2 d1ekga_ d.82.2.1 (A:) C-termin 24.9 2.3 0.00017 32.5 -2.9 20 4-23 52-71 (119)
3 d2fqla1 d.82.2.1 (A:61-172) C- 23.6 3.2 0.00023 31.4 -2.3 20 4-23 57-76 (112)
4 d1eucb1 c.23.4.1 (B:246-393) S 4.9 66 0.0048 25.0 -0.2 49 7-58 66-114 (148)
5 d2olua1 d.2.1.10 (A:68-292) Pe 4.8 89 0.0065 25.6 0.5 24 12-35 100-123 (225)
6 d1bf5a3 d.93.1.1 (A:569-710) S 4.5 2.8E+02 0.02 21.1 3.4 47 15-70 2-51 (142)
7 d1n0ua1 b.43.3.1 (A:344-481) E 4.5 1.3E+02 0.0098 22.2 1.4 25 47-71 31-62 (138)
8 d2tpta1 a.46.2.1 (A:1-70) Thym 4.4 85 0.0062 20.5 0.0 20 29-48 14-33 (70)
9 d2oqoa1 d.2.1.10 (A:57-243) Pe 4.2 1E+02 0.0073 24.5 0.4 23 13-35 81-103 (187)
10 d2cmea1 b.164.1.1 (A:9-98) Hyp 4.2 85 0.0062 21.8 -0.1 18 50-67 24-41 (78)
No 1
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=25.66 E-value=2.6 Score=31.59 Aligned_cols=21 Identities=24% Similarity=0.749 Sum_probs=17.7
Q ss_pred chhhhhccCChhhHHHhhhcc
Q psy8283 4 AQFVLAKKGPLARIWLAAHWD 24 (285)
Q Consensus 4 S~~lLskkgpLa~IWLAAt~~ 24 (285)
++.|++|..|..+||||+-.+
T Consensus 47 ~~~VINkQ~p~~QIWlaSpsg 67 (106)
T d1ew4a_ 47 SKIIINRQEPLHQVWLATKQG 67 (106)
T ss_dssp CEEEEEEETTTTEEEEECSSC
T ss_pred CEEEEeCCCccceeeEECCCC
Confidence 456889999999999999754
No 2
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.87 E-value=2.3 Score=32.54 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=17.3
Q ss_pred chhhhhccCChhhHHHhhhc
Q psy8283 4 AQFVLAKKGPLARIWLAAHW 23 (285)
Q Consensus 4 S~~lLskkgpLa~IWLAAt~ 23 (285)
++.|++|+.|..+||||+-.
T Consensus 52 ~~~VINkQ~p~~QIWlASp~ 71 (119)
T d1ekga_ 52 GTYVINKQTPNKQIWLSSPS 71 (119)
T ss_dssp CEEEEEEEGGGTEEEEEETT
T ss_pred cEEEEeCCCCceeEEEEcCC
Confidence 46788999999999999965
No 3
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.60 E-value=3.2 Score=31.40 Aligned_cols=20 Identities=35% Similarity=0.737 Sum_probs=17.2
Q ss_pred chhhhhccCChhhHHHhhhc
Q psy8283 4 AQFVLAKKGPLARIWLAAHW 23 (285)
Q Consensus 4 S~~lLskkgpLa~IWLAAt~ 23 (285)
++.|++|..|..+|||||-.
T Consensus 57 ~~~VINkQ~p~~QIWlaSp~ 76 (112)
T d2fqla1 57 GTYVINKQPPNKQIWLASPL 76 (112)
T ss_dssp EEEEEEECCSSSSEEEEETT
T ss_pred CEEEEeCCCchhheeEecCC
Confidence 45688999999999999964
No 4
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=4.89 E-value=66 Score=24.99 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=35.5
Q ss_pred hhhccCChhhHHHhhhccCccchhhhhccCHHHHHHHhcCCCCcchhhhhhc
Q psy8283 7 VLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGH 58 (285)
Q Consensus 7 lLskkgpLa~IWLAAt~~kKLsKk~Il~vdI~~sce~Il~P~~p~ALRLSg~ 58 (285)
|+.++..+-.||+ ++---++|-+..--=|.++++++ .++.|+-.||+|.
T Consensus 66 iil~d~~Vk~IlI--NIfGGI~rcD~vA~GIv~A~~e~-~~~iPiVVRL~Gt 114 (148)
T d1eucb1 66 LLTADPKVEAILV--NIFGGIVNCAIIANGITKACREL-ELKVPLVVRLEGT 114 (148)
T ss_dssp HTTSCTTCCEEEE--EEECSSSCHHHHHHHHHHHHHHH-TCCSCEEEEEEST
T ss_pred HHHCCCCccEEEE--EeeEeehhHHHHHHHHHHHHHhc-CCCccEEEEeccC
Confidence 4444555555665 33347888888888889999887 4789999999886
No 5
>d2olua1 d.2.1.10 (A:68-292) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}
Probab=4.80 E-value=89 Score=25.57 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=20.5
Q ss_pred CChhhHHHhhhccCccchhhhhcc
Q psy8283 12 GPLARIWLAAHWDKKLTKAHVFET 35 (285)
Q Consensus 12 gpLa~IWLAAt~~kKLsKk~Il~v 35 (285)
-.+..+|+|-.++++++|++|++.
T Consensus 100 RK~~E~~~A~~lE~~~sK~eILe~ 123 (225)
T d2olua1 100 RKAQEAYLSYRLEQEYSKDDIFQV 123 (225)
T ss_dssp TTHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHH
Confidence 357788999999999999999875
No 6
>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.54 E-value=2.8e+02 Score=21.14 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=34.7
Q ss_pred hhHHHhhhccCccchhhhhccCHHHHHHHhcC--CCCcchhhhh-hccccceEEEEecc
Q psy8283 15 ARIWLAAHWDKKLTKAHVFETNIEKSVDGILQ--PKVKMALRTS-GHLLLGVVRIYSRK 70 (285)
Q Consensus 15 a~IWLAAt~~kKLsKk~Il~vdI~~sce~Il~--P~~p~ALRLS-g~LLlGVVRIYsrK 70 (285)
-.+|-.++.---++|.+ ++.++. |...+=||.| +++-.||+.-|--+
T Consensus 2 ~~lW~dG~I~GFIsK~~---------a~~~L~~~~~GTFLLRFSdS~~~GgitiawV~~ 51 (142)
T d1bf5a3 2 LPLWNDGCIMGFISKER---------ERALLKDQQPGTFLLRFSESSREGAITFTWVER 51 (142)
T ss_dssp HHHHHTTCCCCCCCHHH---------HHHHTTTCCSCCCCEEECSSCSSCCEEEEECCC
T ss_pred cccccCCEEEEEecHHH---------HHHHhhCCCCceEEEEeccCccCCceEEEEEEe
Confidence 35788777777888865 455655 4567999999 57789999988543
No 7
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.52 E-value=1.3e+02 Score=22.19 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=17.6
Q ss_pred CCCcchhhhhhcc-------ccceEEEEecch
Q psy8283 47 PKVKMALRTSGHL-------LLGVVRIYSRKA 71 (285)
Q Consensus 47 P~~p~ALRLSg~L-------LlGVVRIYsrKv 71 (285)
|+.|+..-.+... +++++||||=++
T Consensus 31 ~~~Pl~~~v~k~~~~~~~g~~~~~gRV~SGtl 62 (138)
T d1n0ua1 31 PKADLMLYVSKMVPTSDKGRFYAFGRVFAGTV 62 (138)
T ss_dssp TTSSCEEEEEEEEEBSSTTCEEEEEEEEESEE
T ss_pred CCCCEEEEEEeeccCCCCCEEEEEEEEEeceE
Confidence 6777766655544 468899999665
No 8
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=4.37 E-value=85 Score=20.51 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=11.3
Q ss_pred hhhhhccCHHHHHHHhcCCC
Q psy8283 29 KAHVFETNIEKSVDGILQPK 48 (285)
Q Consensus 29 Kk~Il~vdI~~sce~Il~P~ 48 (285)
++.+..-.+...++.|++.+
T Consensus 14 g~~Ls~~E~~~~~~~i~~g~ 33 (70)
T d2tpta1 14 GHALSDEEIRFFINGIRDNT 33 (70)
T ss_dssp TCCCCHHHHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHHHcCC
Confidence 33333445666777777644
No 9
>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a {Aquifex aeolicus [TaxId: 63363]}
Probab=4.20 E-value=1e+02 Score=24.51 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=19.4
Q ss_pred ChhhHHHhhhccCccchhhhhcc
Q psy8283 13 PLARIWLAAHWDKKLTKAHVFET 35 (285)
Q Consensus 13 pLa~IWLAAt~~kKLsKk~Il~v 35 (285)
.+..+|+|--+++.++|++|++.
T Consensus 81 K~~E~~~a~~lE~~~sK~eILe~ 103 (187)
T d2oqoa1 81 KIKEALLAIKIERTFDKKKIMEL 103 (187)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHH
Confidence 36678899999999999999875
No 10
>d2cmea1 b.164.1.1 (A:9-98) Hypothetical protein 5 (ORF-9b) {SARS coronavirus [TaxId: 227859]}
Probab=4.16 E-value=85 Score=21.76 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=16.0
Q ss_pred cchhhhhhccccceEEEE
Q psy8283 50 KMALRTSGHLLLGVVRIY 67 (285)
Q Consensus 50 p~ALRLSg~LLlGVVRIY 67 (285)
|+-|||-+||-+..||--
T Consensus 24 piilrlgs~lslsm~rr~ 41 (78)
T d2cmea1 24 PIILRLGSNLSLSMARRN 41 (78)
T ss_dssp EEEECCSSCCEEEEEEBC
T ss_pred eeeeeeccccchHHHHcc
Confidence 899999999999999854
Done!