Your job contains 1 sequence.
>psy8283
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL
LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT
MPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFALPGRPIPARALFKDANLLFEDGPL
GRVCDPPQFMSSSTSMMNQMEIDGDAFSGNLNADAPHMFGLKLFDDTPIGGVDMNEPPAP
PSVPPPAPESDDDDHFGGPASPMGHPRSRTIHSIVYSVKTLVPQR
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8283
(285 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0260987 - symbol:vtd "verthandi" species:7227 "Dro... 598 4.1e-73 2
ZFIN|ZDB-GENE-030131-994 - symbol:rad21a "RAD21 homolog (... 557 8.7e-65 2
ZFIN|ZDB-GENE-060503-223 - symbol:rad21b "RAD21 homolog (... 553 1.8e-64 2
UNIPROTKB|O93310 - symbol:rad21 "Double-strand-break repa... 550 3.7e-64 2
UNIPROTKB|Q3SWX9 - symbol:RAD21 "Double-strand-break repa... 575 8.6e-56 1
MGI|MGI:108016 - symbol:Rad21 "RAD21 homolog (S. pombe)" ... 574 1.1e-55 1
UNIPROTKB|E2QRU9 - symbol:RAD21 "Uncharacterized protein"... 570 2.9e-55 1
UNIPROTKB|F1S1K0 - symbol:LOC100738633 "Uncharacterized p... 570 2.9e-55 1
RGD|1594529 - symbol:Rad21 "RAD21 homolog (S. pombe)" spe... 570 2.9e-55 1
UNIPROTKB|O60216 - symbol:RAD21 "Double-strand-break repa... 560 3.4e-54 1
UNIPROTKB|E5RFV8 - symbol:RAD21 "Double-strand-break repa... 560 3.4e-54 1
UNIPROTKB|E5RIN7 - symbol:RAD21 "Double-strand-break repa... 560 3.4e-54 1
UNIPROTKB|F1NYD0 - symbol:RAD21 "Uncharacterized protein"... 556 8.9e-54 1
UNIPROTKB|E5RJK5 - symbol:RAD21 "Double-strand-break repa... 549 4.9e-53 1
UNIPROTKB|E1BTU9 - symbol:RAD21L1 "Uncharacterized protei... 469 5.4e-53 2
MGI|MGI:3652039 - symbol:Rad21l "RAD21-like (S. pombe)" s... 483 1.1e-52 2
UNIPROTKB|D2HSB3 - symbol:RAD21L1 "Double-strand-break re... 481 1.4e-52 2
UNIPROTKB|Q9H4I0 - symbol:RAD21L1 "Double-strand-break re... 478 6.1e-52 2
UNIPROTKB|E5RJW1 - symbol:RAD21 "Double-strand-break repa... 538 7.2e-52 1
ZFIN|ZDB-GENE-061103-505 - symbol:rad21l1 "RAD21-like 1 (... 450 9.8e-50 2
UNIPROTKB|F1PWJ5 - symbol:RAD21L1 "Uncharacterized protei... 486 2.3e-46 1
UNIPROTKB|F1S874 - symbol:RAD21L1 "Uncharacterized protei... 483 4.8e-46 1
UNIPROTKB|E1B9J3 - symbol:RAD21L1 "Uncharacterized protei... 479 1.3e-45 1
RGD|1587557 - symbol:Rad21l1 "RAD21-like 1 (S. pombe)" sp... 478 1.6e-45 1
UNIPROTKB|E1BTV6 - symbol:RAD21L1 "Uncharacterized protei... 469 1.5e-44 1
UNIPROTKB|E1C938 - symbol:RAD21L1 "Uncharacterized protei... 469 1.5e-44 1
WB|WBGene00004737 - symbol:scc-1 species:6239 "Caenorhabd... 380 1.8e-38 2
WB|WBGene00000591 - symbol:coh-1 species:6239 "Caenorhabd... 388 4.4e-38 2
TAIR|locus:2181457 - symbol:SYN4 "sister chromatid cohesi... 353 4.8e-31 1
POMBASE|SPCC338.17c - symbol:rad21 "mitotic cohesin compl... 339 4.4e-30 1
ASPGD|ASPL0000069046 - symbol:AN7465 species:162425 "Emer... 318 6.7e-28 1
UNIPROTKB|G4MR40 - symbol:MGG_09891 "Double-strand-break ... 304 2.9e-26 1
DICTYBASE|DDB_G0276977 - symbol:rad21 "cohesin subunit" s... 274 9.2e-23 1
TAIR|locus:2097548 - symbol:SYN3 "AT3G59550" species:3702... 265 6.1e-22 1
TAIR|locus:2164501 - symbol:SYN2 species:3702 "Arabidopsi... 218 9.0e-17 1
TAIR|locus:2169667 - symbol:SYN1 "SYNAPTIC 1" species:370... 191 3.3e-13 1
SGD|S000002161 - symbol:MCD1 "Essential alpha-kleisin sub... 144 3.2e-07 1
CGD|CAL0000863 - symbol:MCD1 species:5476 "Candida albica... 135 3.5e-06 1
UNIPROTKB|E2RT31 - symbol:REC8 "Uncharacterized protein" ... 122 0.00011 1
UNIPROTKB|F1SGN3 - symbol:REC8 "Uncharacterized protein" ... 117 0.00040 1
POMBASE|SPBC29A10.14 - symbol:rec8 "meiotic cohesin compl... 114 0.00083 1
RGD|1309376 - symbol:Rec8 "REC8 homolog (yeast)" species:... 114 0.00089 1
>FB|FBgn0260987 [details] [associations]
symbol:vtd "verthandi" species:7227 "Drosophila melanogaster"
[GO:0006289 "nucleotide-excision repair" evidence=NAS] [GO:0008278
"cohesin complex" evidence=ISS;IDA;NAS;IPI] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=ISS;IMP;NAS] [GO:0000775
"chromosome, centromeric region" evidence=NAS] [GO:0007067
"mitosis" evidence=IMP] [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0005705 "polytene chromosome interband"
evidence=IDA] [GO:0016322 "neuron remodeling" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IGI] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0005634
GO:GO:0007052 GO:GO:0016322 GO:GO:0010628 GO:GO:0005721
GO:GO:0000228 GO:GO:0007064 GO:GO:0008278 GO:GO:0005705
EMBL:CM000458 eggNOG:NOG249424 GeneTree:ENSGT00390000011606
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:AF109926
EMBL:AF267746 EMBL:AF267745 EMBL:BT100037 RefSeq:NP_001015132.1
UniGene:Dm.3062 DIP:DIP-18950N MINT:MINT-1730906 STRING:O96689
EnsemblMetazoa:FBtr0113746 GeneID:3354896 KEGG:dme:Dmel_CG17436
UCSC:CG17436-RA CTD:3354896 FlyBase:FBgn0260987 InParanoid:O96689
OMA:KRLMHWK OrthoDB:EOG44J102 GenomeRNAi:3354896 NextBio:849550
Uniprot:O96689
Length = 715
Score = 598 (215.6 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 112/130 (86%), Positives = 121/130 (93%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY +LAKKGPLARIWLAAHWDKK+TKAHVFETNIEKSV+GILQPKVK+ALRTSGHLL
Sbjct: 1 MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPKVKLALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPE +REA VNAITLPEVFHDF+T
Sbjct: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGHREANVNAITLPEVFHDFDTA 120
Query: 121 MPEINSVQFE 130
+PE+N + E
Sbjct: 121 LPELNDIDIE 130
Score = 159 (61.0 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 30/38 (78%), Positives = 34/38 (89%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPIPARALFKDAN 172
LAPPTKRLM+WKE+GGVEKLF+LP R IPARALF + N
Sbjct: 364 LAPPTKRLMYWKETGGVEKLFSLPSRSIPARALFGNYN 401
Score = 40 (19.1 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 152 EKLFALPGRPIPARALFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNL 211
+ LF P +P+ L +D + + S +TS++N +E + + NL
Sbjct: 231 DDLFGDPSQPVEQITKESTTVLNADDSDEDAIDNIHNVPSPATSLVNSIEDEKE--ENNL 288
Query: 212 NADA 215
N A
Sbjct: 289 NGHA 292
>ZFIN|ZDB-GENE-030131-994 [details] [associations]
symbol:rad21a "RAD21 homolog (S. pombe) a"
species:7955 "Danio rerio" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IMP] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 ZFIN:ZDB-GENE-030131-994 GO:GO:0043565
GO:GO:0006357 GO:GO:0043280 GO:GO:0000228 GO:GO:0007064
HOVERGEN:HBG059956 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:BC045311 IPI:IPI01005011 RefSeq:NP_955889.1 UniGene:Dr.94731
ProteinModelPortal:Q7ZW30 STRING:Q7ZW30 GeneID:322275
KEGG:dre:322275 CTD:322275 InParanoid:Q7ZW30 NextBio:20807742
ArrayExpress:Q7ZW30 Uniprot:Q7ZW30
Length = 643
Score = 557 (201.1 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
Identities = 102/127 (80%), Positives = 116/127 (91%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPEDNREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEDNREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSV 127
+P+++ +
Sbjct: 121 LPDLDDI 127
Score = 121 (47.7 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPI 162
LAPPTK+LM WKE+GGVEKLF+LP +P+
Sbjct: 354 LAPPTKKLMMWKETGGVEKLFSLPAQPL 381
Score = 41 (19.5 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 167 LFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNLNADAP 216
+ D L EDG G + D P ++ S M D D F A P
Sbjct: 224 ILMDKILSNEDG--GGIFDDPPAITDSVMMPQDHGDDDDDFDNFSPAGGP 271
>ZFIN|ZDB-GENE-060503-223 [details] [associations]
symbol:rad21b "RAD21 homolog (S. pombe) b"
species:7955 "Danio rerio" [GO:0000228 "nuclear chromosome"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 ZFIN:ZDB-GENE-060503-223 EMBL:CR786578 GO:GO:0000228
eggNOG:NOG249424 GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:CR848704 IPI:IPI00491569
RefSeq:NP_001038585.1 UniGene:Dr.84558 Ensembl:ENSDART00000051717
Ensembl:ENSDART00000132800 GeneID:566831 KEGG:dre:566831 CTD:566831
NextBio:20888396 Uniprot:Q1L8E1
Length = 637
Score = 553 (199.7 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 101/127 (79%), Positives = 116/127 (91%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSV 127
+P+++ +
Sbjct: 121 LPDLDDI 127
Score = 122 (48.0 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPIPARALFK 169
LAPPTK+LM WKE+GGVEKLF+LP +P+ L K
Sbjct: 357 LAPPTKKLMMWKETGGVEKLFSLPAQPLWNSRLLK 391
>UNIPROTKB|O93310 [details] [associations]
symbol:rad21 "Double-strand-break repair protein rad21
homolog" species:8355 "Xenopus laevis" [GO:0071168 "protein
localization to chromatin" evidence=ISS] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0006915
GO:GO:0007059 GO:GO:0000775 GO:GO:0051301 GO:GO:0007067
GO:GO:0006281 GO:GO:0000228 GO:GO:0071168 CTD:5885
HOVERGEN:HBG059956 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AF051786 RefSeq:NP_001083807.1 UniGene:Xl.53864
ProteinModelPortal:O93310 IntAct:O93310 GeneID:399129
KEGG:xla:399129 Uniprot:O93310
Length = 629
Score = 550 (198.7 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 101/127 (79%), Positives = 116/127 (91%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSV 127
+P+++ +
Sbjct: 121 LPDLDDI 127
Score = 122 (48.0 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPIPARALFK 169
LAPPTK+LM WKE+GGVEKLF+LP +P+ L K
Sbjct: 351 LAPPTKKLMMWKETGGVEKLFSLPAQPLWNTRLLK 385
>UNIPROTKB|Q3SWX9 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9913 "Bos taurus" [GO:0071168 "protein
localization to chromatin" evidence=ISS] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 GO:GO:0006915 GO:GO:0007059 GO:GO:0000775
GO:GO:0051301 GO:GO:0007067 GO:GO:0006281 GO:GO:0006357
GO:GO:0000228 GO:GO:0071168 EMBL:BC104612 IPI:IPI00708412
RefSeq:NP_001029889.1 UniGene:Bt.15668 ProteinModelPortal:Q3SWX9
STRING:Q3SWX9 PRIDE:Q3SWX9 Ensembl:ENSBTAT00000009607 GeneID:540966
KEGG:bta:540966 CTD:5885 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 InParanoid:Q3SWX9 KO:K06670 OMA:VPREEQQ
OrthoDB:EOG47PX5K NextBio:20878937 Gene3D:1.10.10.580
InterPro:IPR023093 Uniprot:Q3SWX9
Length = 630
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 118/212 (55%), Positives = 148/212 (69%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
+P+++ + SL + + +E G + L F + R I + F+D
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180
Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
++L G + +P Q S+ +N +E +
Sbjct: 181 DMLASTGASNLLLEPEQSTSNLNEKINHLEYE 212
Score = 123 (48.4 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPIPARALFK 169
LAPPTK+LM WKE+GGVEKLF+LP +P+ L K
Sbjct: 353 LAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLK 387
>MGI|MGI:108016 [details] [associations]
symbol:Rad21 "RAD21 homolog (S. pombe)" species:10090 "Mus
musculus" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0007067 "mitosis" evidence=IEA] [GO:0008278 "cohesin complex"
evidence=IDA] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IDA] [GO:0051301 "cell division" evidence=IEA] [GO:0071168
"protein localization to chromatin" evidence=ISO]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
MGI:MGI:108016 GO:GO:0006915 GO:GO:0007059 GO:GO:0005654
GO:GO:0000775 GO:GO:0051301 GO:GO:0007067 GO:GO:0006281
GO:GO:0006357 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 GO:GO:0071168 CTD:5885 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 ChiTaRS:RAD21 EMBL:D49429
EMBL:X98293 EMBL:AF332086 EMBL:AF332085 EMBL:AK004746 EMBL:AK163992
EMBL:BC043032 IPI:IPI00329840 PIR:JC4248 RefSeq:NP_033035.3
UniGene:Mm.182628 ProteinModelPortal:Q61550 SMR:Q61550
DIP:DIP-56655N IntAct:Q61550 STRING:Q61550 PhosphoSite:Q61550
PaxDb:Q61550 PRIDE:Q61550 Ensembl:ENSMUST00000022927 GeneID:19357
KEGG:mmu:19357 InParanoid:Q810A8 NextBio:296405 Bgee:Q61550
CleanEx:MM_RAD21 Genevestigator:Q61550
GermOnline:ENSMUSG00000022314 GO:GO:0034991 Uniprot:Q61550
Length = 635
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 118/212 (55%), Positives = 147/212 (69%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
+P+++ + SL + + +E G + L F + R I + F+D
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180
Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
++L + +P Q S+ MN +E +
Sbjct: 181 DMLVSTSASNLLLEPEQSTSNLNEKMNHLEYE 212
Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPIPARALFK 169
LAPPTK+LM WKE+GGVEKLF LP +P+ L K
Sbjct: 353 LAPPTKKLMMWKETGGVEKLFFLPAQPLWNNRLLK 387
>UNIPROTKB|E2QRU9 [details] [associations]
symbol:RAD21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071168 "protein localization to chromatin"
evidence=IEA] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0006357
GO:GO:0000228 GO:GO:0071168 CTD:5885 GeneTree:ENSGT00390000011606
KO:K06670 OMA:VPREEQQ Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AAEX03008760 RefSeq:XP_539142.2 Ensembl:ENSCAFT00000001286
GeneID:482021 KEGG:cfa:482021 NextBio:20856709 Uniprot:E2QRU9
Length = 631
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 117/212 (55%), Positives = 147/212 (69%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
+P+++ + SL + + +E G + L F + R I + F+D
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180
Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
++L + +P Q S+ +N +E +
Sbjct: 181 DMLVSTSASNLLLEPEQSTSNLNEKINHLEYE 212
Score = 123 (48.4 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPIPARALFK 169
LAPPTK+LM WKE+GGVEKLF+LP +P+ L K
Sbjct: 353 LAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLK 387
>UNIPROTKB|F1S1K0 [details] [associations]
symbol:LOC100738633 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0000228 "nuclear chromosome" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GeneTree:ENSGT00390000011606 KO:K06670 OMA:VPREEQQ
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:AEMK01148771
EMBL:CU467777 EMBL:CU656020 RefSeq:XP_003481396.1
Ensembl:ENSSSCT00000006600 Ensembl:ENSSSCT00000033947
GeneID:100738633 KEGG:ssc:100738633 Uniprot:F1S1K0
Length = 631
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 117/212 (55%), Positives = 147/212 (69%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
+P+++ + SL + + +E G + L F + R I + F+D
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180
Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
++L + +P Q S+ +N +E +
Sbjct: 181 DMLVSTSASNLLLEPEQSTSNLNEKINHLEYE 212
Score = 123 (48.4 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPIPARALFK 169
LAPPTK+LM WKE+GGVEKLF+LP +P+ L K
Sbjct: 353 LAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLK 387
>RGD|1594529 [details] [associations]
symbol:Rad21 "RAD21 homolog (S. pombe)" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0008278 "cohesin complex" evidence=ISO]
[GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA;ISO]
[GO:0071168 "protein localization to chromatin" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 RGD:1594529
GO:GO:0006357 GO:GO:0000228 EMBL:CH473950 GO:GO:0071168 CTD:5885
eggNOG:NOG249424 GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:BC099200 IPI:IPI00360494
RefSeq:NP_001020872.1 UniGene:Rn.3991 STRING:Q4KLH7
Ensembl:ENSRNOT00000006209 GeneID:314949 KEGG:rno:314949
UCSC:RGD:1594529 InParanoid:Q4KLH7 NextBio:668408
Genevestigator:Q4KLH7 Uniprot:Q4KLH7
Length = 635
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 117/212 (55%), Positives = 147/212 (69%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
+P+++ + SL + + +E G + L F + R I + F+D
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180
Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
++L + +P Q S+ +N +E +
Sbjct: 181 DMLVSTSASNLLLEPEQSTSNLNEKINHLEYE 212
Score = 123 (48.4 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPIPARALFK 169
LAPPTK+LM WKE+GGVEKLF+LP +P+ L K
Sbjct: 353 LAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLK 387
>UNIPROTKB|O60216 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0034991
"nuclear meiotic cohesin complex" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0071168 "protein localization to
chromatin" evidence=IMP] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0007091 "metaphase/anaphase transition of mitotic
cell cycle" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008278 "cohesin
complex" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0006915
Reactome:REACT_115566 GO:GO:0007059 EMBL:CH471060 GO:GO:0005654
Reactome:REACT_21300 GO:GO:0000775 GO:GO:0051301 GO:GO:0006357
Reactome:REACT_111183 GO:GO:0006302 GO:GO:0007091 GO:GO:0007131
GO:GO:0000228 GO:GO:0000236 GO:GO:0008278 Orphanet:199
GO:GO:0071168 CTD:5885 eggNOG:NOG249424 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:X98294 EMBL:D38551
EMBL:AY675320 EMBL:AK289505 EMBL:BC050381 IPI:IPI00006715
RefSeq:NP_006256.1 UniGene:Hs.81848 ProteinModelPortal:O60216
SMR:O60216 DIP:DIP-29201N IntAct:O60216 MINT:MINT-2999858
STRING:O60216 PhosphoSite:O60216 PaxDb:O60216 PeptideAtlas:O60216
PRIDE:O60216 Ensembl:ENST00000297338 GeneID:5885 KEGG:hsa:5885
UCSC:uc003yod.3 GeneCards:GC08M117858 HGNC:HGNC:9811 HPA:CAB022065
HPA:HPA020044 MIM:606462 MIM:614701 neXtProt:NX_O60216
PharmGKB:PA34170 InParanoid:O60216 PhylomeDB:O60216
BioCyc:MetaCyc:ENSG00000164754-MONOMER ChiTaRS:RAD21
GenomeRNAi:5885 NextBio:22884 PMAP-CutDB:O60216 ArrayExpress:O60216
Bgee:O60216 CleanEx:HS_RAD21 Genevestigator:O60216
GermOnline:ENSG00000164754 Uniprot:O60216
Length = 631
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 116/212 (54%), Positives = 146/212 (68%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
+P+++ + SL + + +E G + L F + R I + F+D
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180
Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
++L + + Q S+ +N +E +
Sbjct: 181 DMLVSTTTSNLLLESEQSTSNLNEKINHLEYE 212
Score = 123 (48.4 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPIPARALFK 169
LAPPTK+LM WKE+GGVEKLF+LP +P+ L K
Sbjct: 353 LAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLK 387
>UNIPROTKB|E5RFV8 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00980208
Ensembl:ENST00000517485 ArrayExpress:E5RFV8 Bgee:E5RFV8
Uniprot:E5RFV8
Length = 225
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 116/212 (54%), Positives = 146/212 (68%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
+P+++ + SL + + +E G + L F + R I + F+D
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180
Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
++L + + Q S+ +N +E +
Sbjct: 181 DMLVSTTTSNLLLESEQSTSNLNEKINHLEYE 212
>UNIPROTKB|E5RIN7 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00982810
Ensembl:ENST00000520992 ArrayExpress:E5RIN7 Bgee:E5RIN7
Uniprot:E5RIN7
Length = 228
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 116/212 (54%), Positives = 146/212 (68%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
+P+++ + SL + + +E G + L F + R I + F+D
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180
Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
++L + + Q S+ +N +E +
Sbjct: 181 DMLVSTTTSNLLLESEQSTSNLNEKINHLEYE 212
>UNIPROTKB|F1NYD0 [details] [associations]
symbol:RAD21 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] [GO:0071168 "protein localization to
chromatin" evidence=IEA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 GO:GO:0006357 GO:GO:0000228 GO:GO:0071168
GeneTree:ENSGT00390000011606 OMA:VPREEQQ Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AADN02022645 IPI:IPI00679990
Ensembl:ENSGALT00000025968 Uniprot:F1NYD0
Length = 633
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 116/212 (54%), Positives = 145/212 (68%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
+P+++ + SL + + +E G + L F + R + + F+D
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQDNDFGDFGMDDREMMREGSAFED- 179
Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
++L + +P Q S N +E +
Sbjct: 180 DMLVSTSASNLLLEPEQSTSHLNEKANHLEYE 211
Score = 123 (48.4 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPGRPIPARALFK 169
LAPPTK+LM WKE+GGVEKLF+LP +P+ L K
Sbjct: 352 LAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLK 386
>UNIPROTKB|E5RJK5 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00984166
Ensembl:ENST00000519837 ArrayExpress:E5RJK5 Bgee:E5RJK5
Uniprot:E5RJK5
Length = 124
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 101/124 (81%), Positives = 114/124 (91%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 121 MPEI 124
+P++
Sbjct: 121 LPDL 124
>UNIPROTKB|E1BTU9 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000800 "lateral element" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0007128
"meiotic prophase I" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030893 "meiotic cohesin complex" evidence=IEA] [GO:0070197
"attachment of telomeric heterochromatin to nuclear envelope"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 GO:GO:0000228 GO:GO:0007128 GO:GO:0030893
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AADN02019132 IPI:IPI00819464 Ensembl:ENSGALT00000039400
OMA:EITHVCI Uniprot:E1BTU9
Length = 630
Score = 469 (170.2 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 83/127 (65%), Positives = 107/127 (84%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY ++ ++GPLA+IWLAAHW+KKLTKAH+FE N+E ++ I+ PK +ALRTSGHLL
Sbjct: 1 MFYMHLLVNRRGPLAKIWLAAHWEKKLTKAHIFECNLEATIKKIVSPKFTIALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RK KYLL+DC+EA K+K AFRPG+VDLPE++ EAA +ITLPE FHDFETT
Sbjct: 61 LGVVRIYHRKTKYLLSDCSEALTKMKTAFRPGLVDLPEESCEAAYQSITLPEEFHDFETT 120
Query: 121 MPEINSV 127
+P++N++
Sbjct: 121 LPDLNAI 127
Score = 97 (39.2 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 125 NSVQFEPVKSLAPPTKRLMHWKESGGVEKLFALPGR 160
NSV LAPPTK++M WKESGGVE L + P +
Sbjct: 342 NSVGTLVTLDLAPPTKQIMMWKESGGVETLLSQPAQ 377
>MGI|MGI:3652039 [details] [associations]
symbol:Rad21l "RAD21-like (S. pombe)" species:10090 "Mus
musculus" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000800 "lateral element" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005694 "chromosome" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0007059 "chromosome
segregation" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0007129 "synapsis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0030893 "meiotic cohesin complex" evidence=IDA]
[GO:0070197 "attachment of telomeric heterochromatin to nuclear
envelope" evidence=IMP] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 MGI:MGI:3652039 GO:GO:0007059
GO:GO:0007283 GO:GO:0006302 GO:GO:0000800 GO:GO:0007129
GO:GO:0007128 GO:GO:0070197 GO:GO:0030893
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 Gene3D:1.10.10.580 InterPro:IPR023093
eggNOG:NOG301899 OMA:GMQSFSL OrthoDB:EOG49S67J EMBL:HQ603828
EMBL:AB602048 EMBL:AB574185 EMBL:AL928988 IPI:IPI00752563
RefSeq:NP_001108149.1 UniGene:Mm.473683 ProteinModelPortal:A2AU37
PhosphoSite:A2AU37 PRIDE:A2AU37 Ensembl:ENSMUST00000096439
Ensembl:ENSMUST00000180195 GeneID:668929 KEGG:mmu:668929
UCSC:uc012cfx.1 CTD:668929 InParanoid:A2AU37 NextBio:435965
Genevestigator:A2AU37 Uniprot:A2AU37
Length = 552
Score = 483 (175.1 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 91/133 (68%), Positives = 112/133 (84%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E ++ I+ PKVK+ALRTSGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY+RKAKYLLADC+EAF+K+KM FRPG+VDLP++N EAA N ITLPE FHDFE
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFRPGLVDLPKENFEAAYNTITLPEEFHDFE-- 118
Query: 121 MPEINSVQF-EPV 132
+ IN + EP+
Sbjct: 119 IYNINEIDISEPL 131
Score = 80 (33.2 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 132 VKSLAPPTKRLMHWKESGGVEKLFA 156
V LAPPT+RLM WK+ GGV+ L +
Sbjct: 323 VLDLAPPTQRLMMWKKRGGVDMLLS 347
>UNIPROTKB|D2HSB3 [details] [associations]
symbol:RAD21L1 "Double-strand-break repair protein
rad21-like protein 1" species:9646 "Ailuropoda melanoleuca"
[GO:0005634 "nucleus" evidence=ISS] [GO:0005694 "chromosome"
evidence=ISS] [GO:0007128 "meiotic prophase I" evidence=ISS]
[GO:0030893 "meiotic cohesin complex" evidence=ISS]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0005634 GO:GO:0007059 GO:GO:0000228 GO:GO:0007128
GO:GO:0030893 Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:GL193270
RefSeq:XP_002925456.1 GeneID:100475087 KEGG:aml:100475087
CTD:642636 Uniprot:D2HSB3
Length = 554
Score = 481 (174.4 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 89/127 (70%), Positives = 110/127 (86%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E +++ IL KVK+ALRTSGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKIALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY+RKAKYLLADCNEA +K+KM FRPG+VDLP++N EAA NAITLPE FHDF+T
Sbjct: 61 LGVVRIYNRKAKYLLADCNEALLKMKMTFRPGLVDLPKENFEAAYNAITLPEEFHDFDTQ 120
Query: 121 MPEINSV 127
+N++
Sbjct: 121 --NVNAI 125
Score = 81 (33.6 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 132 VKSLAPPTKRLMHWKESGGVEKLFA 156
V LAPPT+RLM WK+ GGV+ L +
Sbjct: 322 VLELAPPTQRLMMWKKKGGVDTLLS 346
Score = 40 (19.1 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 170 DANLLFEDGPLGR-VCDPPQ 188
D N+L ED L R + PP+
Sbjct: 222 DQNILLEDSHLNREISLPPE 241
>UNIPROTKB|Q9H4I0 [details] [associations]
symbol:RAD21L1 "Double-strand-break repair protein
rad21-like protein 1" species:9606 "Homo sapiens" [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0000800 "lateral
element" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0070197 "attachment of
telomeric heterochromatin to nuclear envelope" evidence=IEA]
[GO:0030893 "meiotic cohesin complex" evidence=ISS] [GO:0005694
"chromosome" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0007128 "meiotic prophase I" evidence=ISS] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0005634
GO:GO:0007059 GO:GO:0000228 GO:GO:0007128 EMBL:AL136531
GO:GO:0030893 EMBL:AL031665 HOGENOM:HOG000233800 HOVERGEN:HBG059956
Gene3D:1.10.10.580 InterPro:IPR023093 CTD:642636 EMBL:BC157891
EMBL:BC171911 IPI:IPI00878979 IPI:IPI00916789 RefSeq:NP_001130038.2
UniGene:Hs.713451 ProteinModelPortal:Q9H4I0 SMR:Q9H4I0
PhosphoSite:Q9H4I0 DMDM:259016327 PaxDb:Q9H4I0 PRIDE:Q9H4I0
Ensembl:ENST00000381882 Ensembl:ENST00000402452
Ensembl:ENST00000409241 GeneID:642636 KEGG:hsa:642636
UCSC:uc010gab.1 GeneCards:GC20P001206 HGNC:HGNC:16271 HPA:HPA053282
neXtProt:NX_Q9H4I0 PharmGKB:PA34171 eggNOG:NOG301899 OMA:GMQSFSL
OrthoDB:EOG49S67J NextBio:114018 ArrayExpress:Q9H4I0 Bgee:Q9H4I0
Genevestigator:Q9H4I0 Uniprot:Q9H4I0
Length = 556
Score = 478 (173.3 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 87/119 (73%), Positives = 107/119 (89%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E +++ IL PKVK+ALRTSGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFET 119
LGVVRIY+RKAKYLLADC+EAF+K+KM F PG+VDLP++N EA+ NAITLPE FHDF+T
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPEEFHDFDT 119
Score = 78 (32.5 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 132 VKSLAPPTKRLMHWKESGGVEKLFA 156
V LAPPT+RLM WK+ GGV L +
Sbjct: 324 VLELAPPTQRLMMWKKRGGVHTLLS 348
>UNIPROTKB|E5RJW1 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00981513
Ensembl:ENST00000522699 ArrayExpress:E5RJW1 Bgee:E5RJW1
Uniprot:E5RJW1
Length = 120
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 100/118 (84%), Positives = 110/118 (93%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFE 118
LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFD 118
>ZFIN|ZDB-GENE-061103-505 [details] [associations]
symbol:rad21l1 "RAD21-like 1 (S. pombe)"
species:7955 "Danio rerio" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
ZFIN:ZDB-GENE-061103-505 GO:GO:0000228 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 Gene3D:1.10.10.580 InterPro:IPR023093 CTD:642636
EMBL:CU467960 EMBL:BC125933 IPI:IPI00771566 RefSeq:NP_001073519.1
UniGene:Dr.84879 Ensembl:ENSDART00000079631 GeneID:571082
KEGG:dre:571082 InParanoid:A0JMM5 OMA:TLKEDFG OrthoDB:EOG4GB773
NextBio:20890409 Uniprot:A0JMM5
Length = 546
Score = 450 (163.5 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
Identities = 80/127 (62%), Positives = 105/127 (82%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYAQ +K+G LA+IWLAAHW+KK+TKAHVFE ++E ++ IL P++K+ LRTSGHLL
Sbjct: 1 MFYAQLFTSKRGTLAKIWLAAHWEKKITKAHVFECDLETTIKEILSPQIKIGLRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIYSRK +YLLADC++A VKIK+AFRPG DLP+D EA + ITLPE F DF++
Sbjct: 61 LGVVRIYSRKTRYLLADCSDALVKIKVAFRPGQTDLPDDAMEATLKTITLPEDFTDFDSQ 120
Query: 121 MPEINSV 127
+P++N++
Sbjct: 121 LPDLNTI 127
Score = 85 (35.0 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 135 LAPPTKRLMHWKESGGVEKL---FALP 158
+APPT++LM W+ESGGV++L F LP
Sbjct: 308 IAPPTRQLMEWRESGGVKQLISSFCLP 334
>UNIPROTKB|F1PWJ5 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0000228 "nuclear chromosome"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 GO:GO:0000228 GeneTree:ENSGT00390000011606
Gene3D:1.10.10.580 InterPro:IPR023093 CTD:642636 OMA:GMQSFSL
EMBL:AAEX03013845 RefSeq:XP_851946.2 Ensembl:ENSCAFT00000010977
GeneID:609572 KEGG:cfa:609572 Uniprot:F1PWJ5
Length = 555
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 118/243 (48%), Positives = 154/243 (63%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E +++ I+ PKVK+ALRTSGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKIISPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY+RKAKYLLADC+EA +K+KM FRPG+VDLP++N EAA +AITLPE FHDF+T
Sbjct: 61 LGVVRIYNRKAKYLLADCSEALLKMKMTFRPGLVDLPKENFEAAYSAITLPEEFHDFDTH 120
Query: 121 MPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLF---ALPGRP-IPARALFKDANLLFE 176
V + + + P + + +E G + LF + P I R F D N+L
Sbjct: 121 NVNAIDVSEQFTHNQSRPEEITL--REHYGNDLLFQAGSFGEEPEILRRHSFFDDNILLN 178
Query: 177 D-GPLGRVCDPPQFMSSSTSMMNQMEI---DGDAFSGNLNADAPHMFGLKLFDDTPIGGV 232
GPL SS S++ + + GD F G+ A A M L DD I
Sbjct: 179 SSGPLAE--------HSSGSLIGEKSLLYDSGDGF-GDEGA-AGEMIDNLLQDDQNILLE 228
Query: 233 DMN 235
DM+
Sbjct: 229 DMH 231
>UNIPROTKB|F1S874 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070197 "attachment of telomeric heterochromatin to
nuclear envelope" evidence=IEA] [GO:0030893 "meiotic cohesin
complex" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007128 "meiotic prophase
I" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
InterPro:IPR006910 Pfam:PF04825 GO:GO:0005634 GO:GO:0007128
GO:GO:0030893 GeneTree:ENSGT00390000011606 OMA:GMQSFSL
EMBL:FP236274 Ensembl:ENSSSCT00000007870 Uniprot:F1S874
Length = 469
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 118/240 (49%), Positives = 152/240 (63%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E +++ IL PKVK+ALRTSGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFET- 119
LGVVRIY+RKAKYLLADC+EA +K+KM FRPG+VDLP+++ EA AITLPE FHDF+T
Sbjct: 61 LGVVRIYNRKAKYLLADCSEALLKMKMTFRPGLVDLPKESFEATYTAITLPEEFHDFDTQ 120
Query: 120 TMPEIN-SVQFEPVKSLAPPTKRLMHWKESGGVEKLFALPGRPIPARALFKDANLLFEDG 178
+ I+ S F P +S P + + KE G + LF P A + F+D
Sbjct: 121 NVNAIDISEHFTPNQS--KPEE--IPLKEDFGNDLLF--PAGSFGEEAEILRRHSFFDDN 174
Query: 179 PLGRVCDPPQFMSSSTSMMNQMEI---DGDAFSGNLNADAPHMFGLKLFDDTPIGGVDMN 235
L P SS S++ + + GD F G+ A A M L DD I DM+
Sbjct: 175 ILLN-SSGPLVEHSSGSLIGEKSLFYDSGDGF-GDEGA-AGEMIDNLLQDDPNILLEDMH 231
>UNIPROTKB|E1B9J3 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070197 "attachment of telomeric heterochromatin to
nuclear envelope" evidence=IEA] [GO:0030893 "meiotic cohesin
complex" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007128 "meiotic prophase
I" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GO:GO:0007128 GO:GO:0030893
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
OMA:GMQSFSL EMBL:DAAA02036365 IPI:IPI00704766
Ensembl:ENSBTAT00000001812 Uniprot:E1B9J3
Length = 557
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 101/186 (54%), Positives = 136/186 (73%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E +++ IL PKVK+ALRTSGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFET- 119
LGVVRIY+RKAKYLLADC+EA +K+KM FRPG+VDLP+++ EAA + ITLPE FHDF+T
Sbjct: 61 LGVVRIYNRKAKYLLADCSEALLKMKMTFRPGLVDLPKESFEAAYSTITLPEEFHDFDTQ 120
Query: 120 TMPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLF---ALPGRP--IPARALFKDANLL 174
TM I+ + +++ + P + + +E G + LF + P + +LF D+ LL
Sbjct: 121 TMNAIDVSECS-IQNQSKPEEITL--REDYGNDLLFHAGSFGEEPEILRRHSLFDDSILL 177
Query: 175 FEDGPL 180
G L
Sbjct: 178 SSSGLL 183
>RGD|1587557 [details] [associations]
symbol:Rad21l1 "RAD21-like 1 (S. pombe)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000800 "lateral element" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005694 "chromosome" evidence=ISO] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0007129 "synapsis"
evidence=ISO] [GO:0007283 "spermatogenesis" evidence=ISO]
[GO:0030893 "meiotic cohesin complex" evidence=ISO] [GO:0070197
"attachment of telomeric heterochromatin to nuclear envelope"
evidence=ISO] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 RGD:1587557 GO:GO:0000228 GO:GO:0007128 GO:GO:0030893
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
OrthoDB:EOG49S67J IPI:IPI00763893 Ensembl:ENSRNOT00000055455
UCSC:RGD:1587557 Uniprot:D4ADQ7
Length = 550
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 112/233 (48%), Positives = 149/233 (63%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E ++ I+ PKVK+ALRTSGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY+RKAKYLLADC+EAF+K+KM FRPG+VDLP++N EAA N ITLPE FHDF+
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFRPGLVDLPKENFEAAYNTITLPEEFHDFD-- 118
Query: 121 MPEINSVQF-EPV-KSLAPPTKRLMHWKESGGVEKLF---ALPGRP-IPARALFKDANLL 174
+ N + EP+ ++ + P + + +E + LF + P + R F D N+L
Sbjct: 119 IYNTNDIDISEPLAQNQSRPEEITL--REEYSTDLLFQTGSFGDEPELLRRHSFFDDNIL 176
Query: 175 FEDGPLGRVCDPPQFMSSSTSMMNQMEID-GDAFSGNLNADAPHMFGLKLFDD 226
G V + S S + + D GD F G+ A M L D+
Sbjct: 177 MNSS--GLVVE---HSSGSLTEEKSLFFDNGDGF-GDEGAAGEMMINHLLQDE 223
>UNIPROTKB|E1BTV6 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000228 "nuclear chromosome" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AADN02019132 IPI:IPI00818854
Ensembl:ENSGALT00000039396 Uniprot:E1BTV6
Length = 613
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 83/127 (65%), Positives = 107/127 (84%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY ++ ++GPLA+IWLAAHW+KKLTKAH+FE N+E ++ I+ PK +ALRTSGHLL
Sbjct: 1 MFYMHLLVNRRGPLAKIWLAAHWEKKLTKAHIFECNLEATIKKIVSPKFTIALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RK KYLL+DC+EA K+K AFRPG+VDLPE++ EAA +ITLPE FHDFETT
Sbjct: 61 LGVVRIYHRKTKYLLSDCSEALTKMKTAFRPGLVDLPEESCEAAYQSITLPEEFHDFETT 120
Query: 121 MPEINSV 127
+P++N++
Sbjct: 121 LPDLNAI 127
>UNIPROTKB|E1C938 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000228 "nuclear chromosome" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AADN02019132 IPI:IPI00584752
Ensembl:ENSGALT00000009982 Uniprot:E1C938
Length = 602
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 83/127 (65%), Positives = 107/127 (84%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY ++ ++GPLA+IWLAAHW+KKLTKAH+FE N+E ++ I+ PK +ALRTSGHLL
Sbjct: 1 MFYMHLLVNRRGPLAKIWLAAHWEKKLTKAHIFECNLEATIKKIVSPKFTIALRTSGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
LGVVRIY RK KYLL+DC+EA K+K AFRPG+VDLPE++ EAA +ITLPE FHDFETT
Sbjct: 61 LGVVRIYHRKTKYLLSDCSEALTKMKTAFRPGLVDLPEESCEAAYQSITLPEEFHDFETT 120
Query: 121 MPEINSV 127
+P++N++
Sbjct: 121 LPDLNAI 127
>WB|WBGene00004737 [details] [associations]
symbol:scc-1 species:6239 "Caenorhabditis elegans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0045132 "meiotic
chromosome segregation" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040002 "collagen
and cuticulin-based cuticle development" evidence=IMP] [GO:0007126
"meiosis" evidence=IMP] [GO:0007130 "synaptonemal complex assembly"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0008278 "cohesin complex"
evidence=IPI] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0003684 GO:GO:0040011 GO:GO:0040035
GO:GO:0045132 GO:GO:0040002 EMBL:FO081114 GO:GO:0000228
GO:GO:0007130 GO:GO:0008278 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
PIR:G88130 RefSeq:NP_494836.1 ProteinModelPortal:Q19325 SMR:Q19325
DIP:DIP-24317N IntAct:Q19325 MINT:MINT-226784 STRING:Q19325
PaxDb:Q19325 EnsemblMetazoa:F10G7.4 GeneID:173808
KEGG:cel:CELE_F10G7.4 UCSC:F10G7.4 CTD:173808 WormBase:F10G7.4
HOGENOM:HOG000017446 InParanoid:Q19325 NextBio:881199
Uniprot:Q19325
Length = 645
Score = 380 (138.8 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 75/144 (52%), Positives = 103/144 (71%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYAQFVLAKKGPLA++WLAAHW+KKLTKA +FET++ ++++ +++PKVKMALRT GHLL
Sbjct: 1 MFYAQFVLAKKGPLAKVWLAAHWEKKLTKAQIFETDVPQAIEEVIRPKVKMALRTVGHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGM---VDLPEDNREAAVNAITLPEVFHDF 117
LG+VRIYS+K +YLLAD NEA+ K+K+ FR G VD+PE N E + +
Sbjct: 61 LGIVRIYSKKTRYLLADTNEAYQKMKINFRNGFSFEVDIPE-NAEIEED---FSNFIDKY 116
Query: 118 ETTMPEINSVQFEPVKSLAPPTKR 141
T+PE + + +A ++R
Sbjct: 117 NITVPEFHDADYNEQLIMANVSRR 140
Score = 59 (25.8 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 24/86 (27%), Positives = 39/86 (45%)
Query: 132 VKSLAPPTKRLMHWKESGGVEKLFALPGRPIPARALFKDAN--LLFEDGPLGRVCDPPQF 189
V +APPT+++ + SG ++ L PG + R L + L+ + L Q
Sbjct: 357 VVEMAPPTRKMFNLCVSGDLQHLSREPGCKMFNRELLQRYRRCLVTREFDLNYTM---QE 413
Query: 190 MSSSTSMMNQMEIDGDAFSG-NLNAD 214
+S S+S ME + + NLN D
Sbjct: 414 LSDSSSFTPSMEAQAEPWEDLNLNED 439
>WB|WBGene00000591 [details] [associations]
symbol:coh-1 species:6239 "Caenorhabditis elegans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0045132 "meiotic chromosome segregation" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0007130
"synaptonemal complex assembly" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=ISS]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003684 GO:GO:0040011 GO:GO:0045132 GO:GO:0000228
GO:GO:0007130 eggNOG:NOG249424 GeneTree:ENSGT00390000011606
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:FO080256
PIR:T16582 RefSeq:NP_509262.1 ProteinModelPortal:Q21306 SMR:Q21306
STRING:Q21306 PaxDb:Q21306 EnsemblMetazoa:K08A8.3 GeneID:181003
KEGG:cel:CELE_K08A8.3 UCSC:K08A8.3 CTD:181003 WormBase:K08A8.3
HOGENOM:HOG000020951 InParanoid:Q21306 OMA:DIEQKEP NextBio:911936
Uniprot:Q21306
Length = 652
Score = 388 (141.6 bits), Expect = 4.4e-38, Sum P(2) = 4.4e-38
Identities = 69/126 (54%), Positives = 99/126 (78%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFYA FVL+KKGPL+++WLAAHW+KKL+KA +FET+++++V+ I+QP K+ALRT+GHLL
Sbjct: 56 MFYADFVLSKKGPLSKVWLAAHWEKKLSKAQIFETDVDEAVNEIMQPSQKLALRTTGHLL 115
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDF-ET 119
LG+ R+YSRK KYLLADCNEAF+KIK+ FR G +D P + ++ +++ DF +
Sbjct: 116 LGICRVYSRKTKYLLADCNEAFLKIKLVFRSGALDQPNP----VLPTFSIQDIYGDFGDN 171
Query: 120 TMPEIN 125
+PE +
Sbjct: 172 VLPEFD 177
Score = 47 (21.6 bits), Expect = 4.4e-38, Sum P(2) = 4.4e-38
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 135 LAPPTKRLMHWKESGGVEKLFALPG 159
LAPP+++LM K+ E + PG
Sbjct: 411 LAPPSRKLMMGKKRSHAEYMHHNPG 435
Score = 46 (21.3 bits), Expect = 5.6e-38, Sum P(2) = 5.6e-38
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 167 LFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNLNADAPHMFGLKLFDD 226
L +DA D GR +P F++ + + N + D D G+++ D ++ G F D
Sbjct: 245 LARDAATT-SDNLFGREREPTPFLNDAHAPGNAIFGDEDFAGGDMDDDDHNVQGSSGFTD 303
>TAIR|locus:2181457 [details] [associations]
symbol:SYN4 "sister chromatid cohesion 1 protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000228 "nuclear
chromosome" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISM] [GO:0007062
"sister chromatid cohesion" evidence=ISS;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007067 "mitosis" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000228
GO:GO:0007062 eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AF400129 IPI:IPI00542370 RefSeq:NP_197131.2
UniGene:At.10001 UniGene:At.67257 ProteinModelPortal:Q8W1Y0
PaxDb:Q8W1Y0 PRIDE:Q8W1Y0 EnsemblPlants:AT5G16270.1 GeneID:831487
KEGG:ath:AT5G16270 TAIR:At5g16270 HOGENOM:HOG000090768
InParanoid:Q8W1Y0 OMA:EYNQDAS PhylomeDB:Q8W1Y0
ProtClustDB:CLSN2690166 Genevestigator:Q8W1Y0 Uniprot:Q8W1Y0
Length = 1031
Score = 353 (129.3 bits), Expect = 4.8e-31, P = 4.8e-31
Identities = 73/126 (57%), Positives = 88/126 (69%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY+QF+LAKKGPL IW+AAH ++KL K V +T+I SVD IL P+ +ALR S HLL
Sbjct: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFH--DFE 118
LGVVRIYSRK YL DC+EA +K+K AFR VDLP + A ++ITLPE F DFE
Sbjct: 61 LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFE 120
Query: 119 TTMPEI 124
EI
Sbjct: 121 LPDNEI 126
>POMBASE|SPCC338.17c [details] [associations]
symbol:rad21 "mitotic cohesin complex, non-SMC subunit
Rad21 (kleisin)" species:4896 "Schizosaccharomyces pombe"
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000775 "chromosome, centromeric
region" evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0007064 "mitotic sister chromatid
cohesion" evidence=IMP] [GO:0008608 "attachment of spindle
microtubules to kinetochore" evidence=IMP] [GO:0030892 "mitotic
cohesin complex" evidence=IDA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 PomBase:SPCC338.17c
GO:GO:0000775 GO:GO:0051301 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0000724 GO:GO:0000794 GO:GO:0008608 GO:GO:0007064
GO:GO:0030892 eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:M96437 PIR:S35547 RefSeq:NP_588151.1
ProteinModelPortal:P30776 IntAct:P30776 STRING:P30776
EnsemblFungi:SPCC338.17c.1 GeneID:2539447 KEGG:spo:SPCC338.17c
OMA:VEACNTI OrthoDB:EOG4C2MKJ NextBio:20800609 PMAP-CutDB:P30776
Uniprot:P30776
Length = 628
Score = 339 (124.4 bits), Expect = 4.4e-30, P = 4.4e-30
Identities = 87/245 (35%), Positives = 135/245 (55%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGIL-QPKVKMALRTSGHL 59
MFY++ +L+KKGPLA++WLAAHW+KKL+K T+IE+SV I+ + MALR SG L
Sbjct: 1 MFYSEAILSKKGPLAKVWLAAHWEKKLSKVQTLHTSIEQSVHAIVTEETAPMALRLSGQL 60
Query: 60 LLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPED--------NREAAVNA--IT 109
+LGVVRIYSRKA+YLL DC EA +++KM+F+PG VD+ E ++A + +T
Sbjct: 61 MLGVVRIYSRKARYLLEDCTEALMRLKMSFQPGQVDMIEPATALQSLKGKDAVTQSANLT 120
Query: 110 LPEVFHDFETTMPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFALPGRPIPARALFK 169
LPE +F+ +P+ ++ F+ + L P++ S +L +LP P+ F
Sbjct: 121 LPETITEFDLLVPD-STFDFQWSQLLRTPSR-------SSNTLELHSLPISSSPS---FP 169
Query: 170 DANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEI------DGDAFSGNLNADAPHMFGLKL 223
+ L E G +V S + N M+ G A ++++D +++
Sbjct: 170 SSQLSIEAGRNAQVESGFSLGESFAHVGNDMQFHLPISNSGAATPRSVHSDNQSQISIEV 229
Query: 224 FDDTP 228
D P
Sbjct: 230 GRDAP 234
>ASPGD|ASPL0000069046 [details] [associations]
symbol:AN7465 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0000228 "nuclear
chromosome" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=IEA] [GO:0008608 "attachment of
spindle microtubules to kinetochore" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030892 "mitotic cohesin complex"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0000228
eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
OrthoDB:EOG4C2MKJ RefSeq:XP_680734.1 ProteinModelPortal:Q5AW65
STRING:Q5AW65 EnsemblFungi:CADANIAT00000558 GeneID:2869516
KEGG:ani:AN7465.2 HOGENOM:HOG000162683 OMA:DATKMFF Uniprot:Q5AW65
Length = 584
Score = 318 (117.0 bits), Expect = 6.7e-28, P = 6.7e-28
Identities = 72/143 (50%), Positives = 97/143 (67%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGIL-QPKVKMALRTSGHL 59
MFY++ +L+K GPLAR+WL+A+ ++KL+K+H+ +++IE SV I+ Q + MALR SG L
Sbjct: 1 MFYSETLLSKTGPLARVWLSANLERKLSKSHILQSDIESSVSAIVDQGQAPMALRLSGQL 60
Query: 60 LLGVVRIYSRKAKYLLADCNEAFVKIKMAFR-PGMVDLPEDNREAAVNAITLPEVFHDFE 118
LLGVVRIYSRKA+YLL DCNEA +KIKMAFR DL + A ITLP+V + +
Sbjct: 61 LLGVVRIYSRKARYLLDDCNEALMKIKMAFRLTNNNDLTT-SAVVAPGGITLPDVLTEAD 119
Query: 119 TTMPEINSVQFEPVKSLAPPTKR 141
M +S+ SL P KR
Sbjct: 120 LFMNLDSSLLIPQPLSLEPEGKR 142
>UNIPROTKB|G4MR40 [details] [associations]
symbol:MGG_09891 "Double-strand-break repair protein rad21"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 EMBL:CM001231 GO:GO:0043581 GO:GO:0000228
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
RefSeq:XP_003709984.1 EnsemblFungi:MGG_09891T0 GeneID:2680935
KEGG:mgr:MGG_09891 Uniprot:G4MR40
Length = 625
Score = 304 (112.1 bits), Expect = 2.9e-26, P = 2.9e-26
Identities = 70/139 (50%), Positives = 96/139 (69%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQP--KVKMALRTSGH 58
MFY+ +L GPL+R+WLAA+ ++KL+KAH+ ++N+ SV+ I+QP + +ALR SG
Sbjct: 1 MFYSDTLLRTTGPLSRVWLAANMERKLSKAHILQSNLRHSVEQIIQPSEEAPLALRLSGQ 60
Query: 59 LLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRP-GMVDLPED----NREAAV--NAITLP 111
LLLGVVRIYSRKA+YLL DCNEA +KIKMAFR G DLP + NRE+ + + IT P
Sbjct: 61 LLLGVVRIYSRKARYLLEDCNEALMKIKMAFRSSGNNDLPTNLHLPNRESLMLQDRIT-P 119
Query: 112 EVFHDFETTMPEINSVQFE 130
HD +P ++ F+
Sbjct: 120 ---HDNLDDLPPEPTLNFD 135
>DICTYBASE|DDB_G0276977 [details] [associations]
symbol:rad21 "cohesin subunit" species:44689
"Dictyostelium discoideum" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
dictyBase:DDB_G0276977 EMBL:AAFI02000019 GO:GO:0000228
eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
RefSeq:XP_642955.1 ProteinModelPortal:Q550H7 PRIDE:Q550H7
GeneID:8620824 KEGG:ddi:DDB_G0276977 InParanoid:Q550H7
Uniprot:Q550H7
Length = 821
Score = 274 (101.5 bits), Expect = 9.2e-23, P = 9.2e-23
Identities = 68/160 (42%), Positives = 95/160 (59%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSV--------------DGILQ 46
MF++Q VLAK+G L +IWLA HWDKKL K VF+TNI KSV + IL
Sbjct: 1 MFFSQIVLAKRGALGKIWLAGHWDKKLAKNVVFKTNIPKSVKINKEINKKKKKKIETILN 60
Query: 47 PKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIK-MAFRPGMVDLP-EDNREAA 104
P MALR + HLLLGV RI+S+KAKYLL+DC EA +K+K ++ +DLP E + +A
Sbjct: 61 PHSPMALRMTSHLLLGVARIFSKKAKYLLSDCTEAVIKLKGLSKTISKIDLPSEQDHQAL 120
Query: 105 VNA----ITLPEVFHDFETTMPEINSVQFEPVKSLAPPTK 140
+ + P+V+ + + + I+ ++ V L P K
Sbjct: 121 LTSGPRQTDKPQVYQEVDRFLRNID-IRDLVVDPLYDPNK 159
>TAIR|locus:2097548 [details] [associations]
symbol:SYN3 "AT3G59550" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0000798 "nuclear cohesin complex"
evidence=ISS] [GO:0007067 "mitosis" evidence=IEP] [GO:0005730
"nucleolus" evidence=IDA] [GO:0009555 "pollen development"
evidence=IMP] [GO:0009561 "megagametogenesis" evidence=IMP]
[GO:0000280 "nuclear division" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0042023 "DNA endoreduplication" evidence=RCA] [GO:0051225
"spindle assembly" evidence=RCA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0007059 GO:GO:0005730 GO:GO:0051301
GO:GO:0007067 GO:GO:0009555 GO:GO:0009561 EMBL:AL138659
eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
GO:GO:0000798 EMBL:AF281155 EMBL:AF400128 IPI:IPI00518598
IPI:IPI00541511 IPI:IPI00548487 PIR:T49296 RefSeq:NP_191514.1
UniGene:At.1119 ProteinModelPortal:Q9FQ19 SMR:Q9FQ19 PaxDb:Q9FQ19
PRIDE:Q9FQ19 EnsemblPlants:AT3G59550.1 GeneID:825124
KEGG:ath:AT3G59550 TAIR:At3g59550 HOGENOM:HOG000090294
InParanoid:Q9FQ19 OMA:TVWCAAH PhylomeDB:Q9FQ19
ProtClustDB:CLSN2915554 Genevestigator:Q9FQ19 GermOnline:AT3G59550
Uniprot:Q9FQ19
Length = 693
Score = 265 (98.3 bits), Expect = 6.1e-22, P = 6.1e-22
Identities = 54/115 (46%), Positives = 74/115 (64%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
MFY+ +LA+KGPL +W AAH ++L K+ NI +VD I+ P+V +ALRTS HLL
Sbjct: 1 MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60
Query: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFH 115
+GVVRIYS+K YL D N + AF V+LPED R+A ++TLP+ +
Sbjct: 61 VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALN 115
>TAIR|locus:2164501 [details] [associations]
symbol:SYN2 species:3702 "Arabidopsis thaliana"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000798 "nuclear cohesin complex"
evidence=ISS] [GO:0007067 "mitosis" evidence=IEP;RCA] [GO:0006302
"double-strand break repair" evidence=RCA;IMP] [GO:0000278 "mitotic
cell cycle" evidence=RCA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0009560 "embryo sac egg cell differentiation" evidence=RCA]
[GO:0010212 "response to ionizing radiation" evidence=RCA]
[GO:0010332 "response to gamma radiation" evidence=RCA] [GO:0010564
"regulation of cell cycle process" evidence=RCA] [GO:0016444
"somatic cell DNA recombination" evidence=RCA] [GO:0016568
"chromatin modification" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051726 "regulation
of cell cycle" evidence=RCA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0007059 GO:GO:0051301 GO:GO:0007067 GO:GO:0006302
EMBL:AB011477 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AF281154 EMBL:AF400126 EMBL:AF400127 IPI:IPI00520467
IPI:IPI00524230 RefSeq:NP_568586.2 RefSeq:NP_851110.1
UniGene:At.9228 ProteinModelPortal:Q9FQ20 STRING:Q9FQ20
PaxDb:Q9FQ20 PRIDE:Q9FQ20 EnsemblPlants:AT5G40840.2 GeneID:834084
KEGG:ath:AT5G40840 TAIR:At5g40840 eggNOG:NOG315638
HOGENOM:HOG000064652 InParanoid:Q9FQ20 OMA:AIWVAAY PhylomeDB:Q9FQ20
ProtClustDB:CLSN2680390 Genevestigator:Q9FQ20 GermOnline:AT5G40840
GO:GO:0000798 Uniprot:Q9FQ20
Length = 810
Score = 218 (81.8 bits), Expect = 9.0e-17, P = 9.0e-17
Identities = 51/124 (41%), Positives = 73/124 (58%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVK-MALRTSGHL 59
MFY+ ++++KGPL IW+AA++ KKL K+ V T+I SVD ILQ ++ + R +L
Sbjct: 1 MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60
Query: 60 LLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFET 119
LLGVVRIYS+K +L DCN+A + +K E NRE ++LP F
Sbjct: 61 LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAK------ERNREKT--GVSLPASIECFSI 112
Query: 120 TMPE 123
+PE
Sbjct: 113 ALPE 116
>TAIR|locus:2169667 [details] [associations]
symbol:SYN1 "SYNAPTIC 1" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISM] [GO:0007062 "sister chromatid cohesion"
evidence=RCA;IMP] [GO:0010032 "meiotic chromosome condensation"
evidence=IMP] [GO:0008278 "cohesin complex" evidence=ISS]
[GO:0005694 "chromosome" evidence=IDA] [GO:0006325 "chromatin
organization" evidence=IMP] [GO:0051455 "attachment of spindle
microtubules to kinetochore involved in homologous chromosome
segregation" evidence=IMP] [GO:0051754 "meiotic sister chromatid
cohesion, centromeric" evidence=IMP] [GO:0006302 "double-strand
break repair" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
[GO:0045132 "meiotic chromosome segregation" evidence=RCA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0051754 EMBL:AB005241
GO:GO:0006325 GO:GO:0000228 GO:GO:0051455 GO:GO:0008278
GO:GO:0010032 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AF080620 EMBL:AF080619 EMBL:AJ238306 IPI:IPI00517990
IPI:IPI00540220 PIR:T52571 RefSeq:NP_196168.1 RefSeq:NP_850773.1
UniGene:At.48986 UniGene:At.690 ProteinModelPortal:Q9S7T7
SMR:Q9S7T7 STRING:Q9S7T7 PRIDE:Q9S7T7 EnsemblPlants:AT5G05490.1
GeneID:830432 KEGG:ath:AT5G05490 GeneFarm:1768 TAIR:At5g05490
eggNOG:NOG252146 HOGENOM:HOG000083970 InParanoid:Q9S7T7 OMA:RLSGILM
PhylomeDB:Q9S7T7 ProtClustDB:CLSN2686639 Genevestigator:Q9S7T7
Uniprot:Q9S7T7
Length = 627
Score = 191 (72.3 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 53/135 (39%), Positives = 74/135 (54%)
Query: 7 VLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLLLGVVRI 66
+LA+K PL +IW+AA K+ + + + +I + + IL P V MALR SG L+ GVV +
Sbjct: 17 LLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVIV 76
Query: 67 YSRKAKYLLADCNEAFVKIKMAFR----PGMVDLPEDNREAAVNAITLPEV----FHDFE 118
Y RK K L D N V+I A+R P LP+ A A+TLPE F DFE
Sbjct: 77 YERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDFE 136
Query: 119 TT--MPEI-NSVQFE 130
T +P+ N + F+
Sbjct: 137 QTRNVPKFGNYMDFQ 151
>SGD|S000002161 [details] [associations]
symbol:MCD1 "Essential alpha-kleisin subunit of the cohesin
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005694
"chromosome" evidence=IEA] [GO:0034087 "establishment of mitotic
sister chromatid cohesion" evidence=IMP] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IEA] [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0051301 "cell division" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0034990 "nuclear mitotic cohesin complex" evidence=IDA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
SGD:S000002161 GO:GO:0005739 GO:GO:0006915 GO:GO:0000775
GO:GO:0051301 EMBL:BK006938 GO:GO:0003682 GO:GO:0006302
GO:GO:0034087 GO:GO:0007076 EMBL:Z48432 GO:GO:0006473 EMBL:Z48008
eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
OrthoDB:EOG4C2MKJ EMBL:Y14280 EMBL:U23759 EMBL:Z74051 PIR:S50979
RefSeq:NP_010281.1 PDB:1W1W PDBsum:1W1W ProteinModelPortal:Q12158
SMR:Q12158 DIP:DIP-5812N IntAct:Q12158 MINT:MINT-627334
STRING:Q12158 PaxDb:Q12158 PeptideAtlas:Q12158 EnsemblFungi:YDL003W
GeneID:851561 KEGG:sce:YDL003W CYGD:YDL003w HOGENOM:HOG000141751
EvolutionaryTrace:Q12158 NextBio:968995 PMAP-CutDB:Q12158
Genevestigator:Q12158 GermOnline:YDL003W GO:GO:0034990
Uniprot:Q12158
Length = 566
Score = 144 (55.7 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 38/108 (35%), Positives = 57/108 (52%)
Query: 11 KGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK---------VKMALRTSGHLLL 61
KGPLA+IWLA++ + + V +T+I +S I + + LRTSG LL
Sbjct: 18 KGPLAQIWLASNMSN-IPRGSVIQTHIAESAKEIAKASGCDDESGDNEYITLRTSGELLQ 76
Query: 62 GVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAIT 109
G+VR+YS++A +LL D + KI M F+ NR +N +T
Sbjct: 77 GIVRVYSKQATFLLTDIKDTLTKISMLFKTSQKMTSTVNR---LNTVT 121
>CGD|CAL0000863 [details] [associations]
symbol:MCD1 species:5476 "Candida albicans" [GO:0034990
"nuclear mitotic cohesin complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006302 "double-strand break
repair" evidence=IEA] [GO:0034087 "establishment of mitotic sister
chromatid cohesion" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007076 "mitotic chromosome condensation"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
CGD:CAL0000863 EMBL:AACQ01000032 GO:GO:0000228 eggNOG:NOG249424
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093 RefSeq:XP_719394.1
ProteinModelPortal:Q5ACK9 STRING:Q5ACK9 GeneID:3639044
KEGG:cal:CaO19.7634 Uniprot:Q5ACK9
Length = 564
Score = 135 (52.6 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 38/100 (38%), Positives = 53/100 (53%)
Query: 31 HVFETNIEKSVD--GILQPKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMA 88
H TN+ S + L + LR SG LLLG+VRIYSRK +YLL D N+ K+K +
Sbjct: 46 HPVITNVSVSQELPSDLDSTNTITLRLSGQLLLGIVRIYSRKTEYLLDDVNDILYKLKAS 105
Query: 89 FRPGM-VDLPEDNREAAVNAITLPEVFHDFETTMPEINSV 127
F+ V+L DN N + LP +T + +NS+
Sbjct: 106 FKLSSGVNLGSDNIS---NQVNLPRE----QTILQNLNSI 138
>UNIPROTKB|E2RT31 [details] [associations]
symbol:REC8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001673 "male germ cell nucleus" evidence=IEA]
[GO:0001556 "oocyte maturation" evidence=IEA] [GO:0000800 "lateral
element" evidence=IEA] [GO:0000778 "condensed nuclear chromosome
kinetochore" evidence=IEA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 GO:GO:0000780 GO:GO:0007286 GO:GO:0001673
GO:GO:0001556 GO:GO:0000800 GO:GO:0007141 GO:GO:0007129
GO:GO:0030893 Gene3D:1.10.10.580 InterPro:IPR023093
GeneTree:ENSGT00390000011379 OMA:ARVFYLL EMBL:AAEX03005616
Ensembl:ENSCAFT00000019096 Uniprot:E2RT31
Length = 585
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 50/169 (29%), Positives = 76/169 (44%)
Query: 1 MFYAQFVLAKK-GPLARIWLAAHWDKKLTKAHVFETNIEKSVDGIL-------------Q 46
MFY VL + G A IWLAA +L K + N+ K+ + IL Q
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLKVNVVKTCEEILDYVLVRVQPPQPGQ 60
Query: 47 PKVKMALRTSGHLLLGVVRIYSRKAKYLLADCN---EAFVKIKMAFRPGMVD--LPE--- 98
P+ + +L S L +GV+R+YS++ +YL+ D E + ++ R MVD LP
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYSQQCQYLVEDIQHILERLHRAQLQIRIDMVDTDLPSLLL 120
Query: 99 DNREAAVNAIT-LPEVFHDF---ETTMPEINSV-QFEPVKSLAPPTKRL 142
N A + + P+ F + T+P S+ Q + A P K L
Sbjct: 121 PNHLAMMETLEDAPDPFFGLMSVDPTLPSPFSIPQIRHLLEAATPEKVL 169
>UNIPROTKB|F1SGN3 [details] [associations]
symbol:REC8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007129 "synapsis" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0001556
"oocyte maturation" evidence=IEA] [GO:0000800 "lateral element"
evidence=IEA] [GO:0000778 "condensed nuclear chromosome
kinetochore" evidence=IEA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 GO:GO:0000780 GO:GO:0007286 GO:GO:0001673
GO:GO:0001556 GO:GO:0000800 GO:GO:0007141 GO:GO:0007129
EMBL:CT961055 GO:GO:0030893 Gene3D:1.10.10.580 InterPro:IPR023093
GeneTree:ENSGT00390000011379 OMA:ARVFYLL Ensembl:ENSSSCT00000002239
Uniprot:F1SGN3
Length = 583
Score = 117 (46.2 bits), Expect = 0.00040, P = 0.00040
Identities = 47/183 (25%), Positives = 77/183 (42%)
Query: 1 MFYAQFVLAKK-GPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQ------------- 46
MFY VL + G A IWLAA +L K + N+EK+ + IL
Sbjct: 1 MFYYPSVLQRHTGCFATIWLAATRGTRLVKREYLKVNVEKTCEEILNYVLVRVQPPLPGL 60
Query: 47 PKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAV- 105
P+ + +L S L +G++R+Y ++ +YL+ D ++ A +D+ E + + +
Sbjct: 61 PRPRFSLYLSAQLQIGIIRVYFQQCQYLVDDIQHILERLHRAQLQIRIDMVETDLPSLLL 120
Query: 106 -NAITLPEVFHDFETTMPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFA--LPGRPI 162
N + + E D P + EP +L H E+ EK+ LP P
Sbjct: 121 PNHLAIMETLEDAPD--PFFGMMSEEPRLPSPFDIPQLRHLLEAVTPEKVLEEILPEVPT 178
Query: 163 PAR 165
R
Sbjct: 179 ELR 181
>POMBASE|SPBC29A10.14 [details] [associations]
symbol:rec8 "meiotic cohesin complex subunit Rec8"
species:4896 "Schizosaccharomyces pombe" [GO:0000228 "nuclear
chromosome" evidence=IC] [GO:0000939 "condensed chromosome inner
kinetochore" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0007131
"reciprocal meiotic recombination" evidence=IMP] [GO:0008278
"cohesin complex" evidence=IDA] [GO:0030893 "meiotic cohesin
complex" evidence=IDA] [GO:0030999 "linear element assembly"
evidence=IMP] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=IMP] [GO:0045143 "homologous chromosome
segregation" evidence=IDA] [GO:0045144 "meiotic sister chromatid
segregation" evidence=IDA;IMP] [GO:0051455 "attachment of spindle
microtubules to kinetochore involved in homologous chromosome
segregation" evidence=IMP] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 PomBase:SPBC29A10.14 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0007131 GO:GO:0000228 GO:GO:0042138
GO:GO:0051455 GO:GO:0045144 GO:GO:0000939 GO:GO:0030893
GO:GO:0030999 Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:AJ223299
EMBL:AB018077 EMBL:M85298 PIR:T43428 RefSeq:NP_596059.1
ProteinModelPortal:P36626 IntAct:P36626 STRING:P36626
EnsemblFungi:SPBC29A10.14.1 GeneID:2540458 KEGG:spo:SPBC29A10.14
eggNOG:NOG42761 KO:K12780 OrthoDB:EOG45F0XT NextBio:20801585
Uniprot:P36626
Length = 561
Score = 114 (45.2 bits), Expect = 0.00083, P = 0.00083
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 1 MFYAQFVLAK-KGPLARIWLAA-----HWDKKLTKAHVFETNIEKSVDGILQPKVKMALR 54
MFY Q VL K KG + IWLAA H +KL K + +I+++ D + +ALR
Sbjct: 1 MFYNQDVLTKEKGGMGVIWLAATLGSKHSLRKLHKKDIMSVDIDEACDFVAFSPEPLALR 60
Query: 55 TSGHLLLGVVRIYSRKAKYLLADCNEAFVKIK 86
S +L++GV R+++ + + + + ++++
Sbjct: 61 LSSNLMIGVTRVWAHQYSFFHSQVSTLHLRVR 92
>RGD|1309376 [details] [associations]
symbol:Rec8 "REC8 homolog (yeast)" species:10116 "Rattus
norvegicus" [GO:0000778 "condensed nuclear chromosome kinetochore"
evidence=IEA;ISO] [GO:0000780 "condensed nuclear chromosome,
centromeric region" evidence=ISO] [GO:0000794 "condensed nuclear
chromosome" evidence=ISO] [GO:0000795 "synaptonemal complex"
evidence=ISO] [GO:0000800 "lateral element" evidence=IEA;ISO]
[GO:0001556 "oocyte maturation" evidence=IEA;ISO] [GO:0001673 "male
germ cell nucleus" evidence=IEA;ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0007126 "meiosis"
evidence=ISO] [GO:0007129 "synapsis" evidence=IEA;ISO] [GO:0007141
"male meiosis I" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0030893 "meiotic cohesin
complex" evidence=ISO] [GO:0034991 "nuclear meiotic cohesin
complex" evidence=IEA;ISO] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 RGD:1309376 GO:GO:0007059 GO:GO:0000780
GO:GO:0007286 GO:GO:0001673 GO:GO:0001556 GO:GO:0000800
GO:GO:0007141 GO:GO:0007129 GO:GO:0030893 Gene3D:1.10.10.580
InterPro:IPR023093 CTD:9985 eggNOG:NOG248028 HOVERGEN:HBG056766
KO:K13054 OrthoDB:EOG4B5P55 GeneTree:ENSGT00390000011379
HOGENOM:HOG000154087 OMA:ARVFYLL EMBL:AY529701 EMBL:BC079023
IPI:IPI00464726 RefSeq:NP_001011916.1 UniGene:Rn.108612
ProteinModelPortal:Q6AYJ4 STRING:Q6AYJ4 PRIDE:Q6AYJ4
Ensembl:ENSRNOT00000026430 GeneID:290227 KEGG:rno:290227
UCSC:RGD:1309376 InParanoid:Q6AYJ4 NextBio:630770
Genevestigator:Q6AYJ4 Uniprot:Q6AYJ4
Length = 593
Score = 114 (45.2 bits), Expect = 0.00089, P = 0.00089
Identities = 41/170 (24%), Positives = 72/170 (42%)
Query: 1 MFYAQFVLAKK-GPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQ------------- 46
MFY VL + G A IWLAA +L K + N+ K+ + IL
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLKVNVVKTCEEILNYVLVRVQPPMPGL 60
Query: 47 PKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAV- 105
P+ + +L S L +GV+R+Y ++ +YL+ D + A +D+ E + + +
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYFQQCQYLVEDIQHILEHLHRAQLRIRIDMEEADLPSLLL 120
Query: 106 -NAITLPEVFHDFETTMPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKL 154
N + + E D P ++ +P ++ H E+ EK+
Sbjct: 121 PNCLAMMETLED--APEPFFGTMSVDPTLPSPFDIPQIRHLLEAATPEKI 168
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.418 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 285 266 0.00094 114 3 11 22 0.45 33
32 0.39 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 606 (64 KB)
Total size of DFA: 196 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.65u 0.08s 22.73t Elapsed: 00:00:23
Total cpu time: 22.66u 0.08s 22.74t Elapsed: 00:00:23
Start: Thu Aug 15 13:51:17 2013 End: Thu Aug 15 13:51:40 2013