RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8283
(285 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.029
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 239 APPSVPPPAPESDDDDHFGGPASPM----GHPRSRTIHSIVYSVKTLVPQ 284
P + PP+ D ++ G SPM + + V + +P
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE-QVQDYVNKTNSHLPA 362
Score = 29.2 bits (65), Expect = 2.0
Identities = 27/174 (15%), Positives = 47/174 (27%), Gaps = 52/174 (29%)
Query: 107 AITLPEVFHDFETTMPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFALPGRPIPARA 166
+ +P + + E QF K L PT+ E +L +
Sbjct: 19 VLLVPTASFFIASQLQE----QF--NKILPEPTEGFAADDEPTTPAELVG---K------ 63
Query: 167 LFKDANLLFEDGPLGRVCDP---PQFMSSSTSMMNQMEIDGDAFSGNLNADAPHMFGLKL 223
F L + + + +P QF + + E + + L + H KL
Sbjct: 64 -F----LGY----VSSLVEPSKVGQFDQVLNLCLTEFE---NCY---LEGNDIHALAAKL 108
Query: 224 F--DDTPIGGVD------------MNEPPAPPSVPPPAPESDDDDH-----FGG 258
+DT + P S + + FGG
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix,
8-oxoguanine, 8-OXOG, DNA damage, DNA repair,
glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Length = 207
Score = 29.2 bits (65), Expect = 1.1
Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 46 QPKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAV 105
+ +++ L++ + R Y+ KAKY++ + + ++K +P + + RE +
Sbjct: 67 EEEIRNILKSCKY------RFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLL 120
Query: 106 N 106
N
Sbjct: 121 N 121
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 29.5 bits (66), Expect = 1.5
Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 5/70 (7%)
Query: 201 EIDGDAFSGNL-NADAPHMFGLKL----FDDTPIGGVDMNEPPAPPSVPPPAPESDDDDH 255
+ D +G+L A + D P P + PA
Sbjct: 404 HLGQDNRNGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPGNLPIMTAPAYVPGTTYA 463
Query: 256 FGGPASPMGH 265
G S G+
Sbjct: 464 QGALVSYQGY 473
>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water
structu transferase; HET: GTX; 1.30A {Homo sapiens}
SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A*
1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A*
3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A*
1xwg_A 3l0h_A* 1ags_A* ...
Length = 221
Score = 27.9 bits (62), Expect = 3.4
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 155 FALPGRPIPARALFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQM---EIDG 204
F GR R L A + FE+ + D + + M Q+ EIDG
Sbjct: 9 FNARGRMESTRWLLAAAGVEFEEKFIKSAEDLDKLRNDGYLMFQQVPMVEIDG 61
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Length = 128
Score = 27.1 bits (59), Expect = 4.3
Identities = 10/44 (22%), Positives = 13/44 (29%)
Query: 224 FDDTPIGGVDMNEPPAPPSVPPPAPESDDDDHFGGPASPMGHPR 267
F TP + E + ASP+G PR
Sbjct: 85 FMKTPDEIMSGRTDRLEHLESQVLDEQTYQEDEPTIASPVGWPR 128
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa
form; zymogen, NTN-hydrolase, penicillin biosynthesis;
1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Length = 357
Score = 27.1 bits (59), Expect = 7.2
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 5/33 (15%)
Query: 254 DHFGGPAS-----PMGHPRSRTIHSIVYSVKTL 281
D P S G R T+ +I+Y
Sbjct: 292 DEDNYPFSICRAYEEGKSRGATLFNIIYDHARR 324
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo
sapiens} SCOP: c.55.3.5
Length = 238
Score = 26.8 bits (59), Expect = 7.9
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 113 VFHDFETT--------MPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFAL--PGRPI 162
VF D E T + E++ P ++KL P RP
Sbjct: 13 VFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPF 72
Query: 163 PARA 166
A+A
Sbjct: 73 TAKA 76
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 25.7 bits (57), Expect = 7.9
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 236 EPPAPPSVPPPAPES 250
+ P PP+ P P S
Sbjct: 99 DKPDPPAGTPSGPSS 113
>2wpn_B Periplasmic [nifese] hydrogenase, large subunit,
selenocysteine-containing; metal-binding,
oxidoreductase, oxygen tolerance; HET: FSX SBY PSW;
2.04A {Desulfovibrio vulgaris}
Length = 495
Score = 26.8 bits (59), Expect = 9.0
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 12 GPLARIWLAAHWDKKLTKAHVFE 34
GPLAR+W+ + K + +
Sbjct: 329 GPLARMWVNNPELSPVGKKLLKD 351
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 27.0 bits (59), Expect = 9.1
Identities = 24/104 (23%), Positives = 34/104 (32%), Gaps = 9/104 (8%)
Query: 165 RALFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNLNADAPHMFGLKLF 224
+ + + EDG G V P S + D FS +++ +
Sbjct: 1452 KYMPEQKITEIEDGQDGGVT--PYSNESGLVNADLDVKDELMFSPLVDSGSNDAMA---G 1506
Query: 225 DDTPIGGVDMNEPPAPPSVPPPAPESDDDDHFGGPASPMGHPRS 268
T GG D E +P AP S G +SP P S
Sbjct: 1507 GFTAYGGADYGEATSPFGAYGEAPTS----PGFGVSSPGFSPTS 1546
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 26.7 bits (60), Expect = 9.4
Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 7/68 (10%)
Query: 70 KAKYLLADCNEAFVKIKMAF-------RPGMVDLPEDNREAAVNAITLPEVFHDFETTMP 122
A + EA KI +P +++ + A + E +
Sbjct: 133 AAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDE 192
Query: 123 EINSVQFE 130
+ E
Sbjct: 193 ASLNAAVE 200
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 26.7 bits (60), Expect = 9.9
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 70 KAKYLLADCNEAFVKIKMAF-------RPGMVDLPEDNREAAVNAITLPEV 113
+ ++ D A +I RP + LP + + V A L
Sbjct: 134 ETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTP 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.418
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,569,025
Number of extensions: 279418
Number of successful extensions: 667
Number of sequences better than 10.0: 1
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 29
Length of query: 285
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 192
Effective length of database: 4,105,140
Effective search space: 788186880
Effective search space used: 788186880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)