RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8283
         (285 letters)



>d2gvha1 d.38.1.1 (A:9-143) Probable acyl-CoA hydrolase AGR_L_2016
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 135

 Score = 29.2 bits (65), Expect = 0.26
 Identities = 5/22 (22%), Positives = 7/22 (31%)

Query: 232 VDMNEPPAPPSVPPPAPESDDD 253
           +   E  A   +P    E   D
Sbjct: 114 IPEGEDAASYVLPELLTEETPD 135


>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides
           polygyrus [TaxId: 6339]}
          Length = 77

 Score = 27.6 bits (61), Expect = 0.40
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 155 FALPGRPIPARALFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDG 204
           F   G    AR +F  A+  +ED  L +    P   +     +  +E+DG
Sbjct: 9   FNGRGAGECARQVFALADQKYEDVRLTQETFVPLKATFPFGQVPVLEVDG 58


>d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 76

 Score = 27.2 bits (60), Expect = 0.58
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 155 FALPGRPIPARALFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
           F +     P R LF   N  +ED  + R   P    +     M  +E+D
Sbjct: 9   FNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPTMPMGQMPVLEVD 57


>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5
           {Haemophilus influenzae [TaxId: 727]}
          Length = 74

 Score = 26.8 bits (59), Expect = 0.83
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 67  YSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHD 116
           +  KAK LL D   +F +I +     +V +      A     T+P+VF  
Sbjct: 17  FCAKAKQLLHDKGLSFEEIILGHDATIVSV-----RAVSGRTTVPQVFIG 61


>d1ogya1 b.52.2.2 (A:682-801) Periplasmic nitrate reductase alpha
           chain, NapA {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 120

 Score = 26.9 bits (59), Expect = 1.3
 Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 83  VKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETTMPE 123
            + +     G+V +P  +    +N +TL     D  +   +
Sbjct: 72  TRGRNRMPRGVVFVPWFDASQLINKVTLDAN--DPISRQTD 110


>d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes
           sloani pacificus) [TaxId: 6634]}
          Length = 75

 Score = 25.4 bits (55), Expect = 2.2
 Identities = 13/54 (24%), Positives = 20/54 (37%)

Query: 155 FALPGRPIPARALFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFS 208
           F L GR    R +       F D  +     P    +  ++ M  ++IDG   S
Sbjct: 8   FPLMGRAELCRFVLAAHGEEFTDRVVEMADWPNLKATMYSNAMPVLDIDGTKMS 61


>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
           {Bacteriophage T4 [TaxId: 10665]}
          Length = 87

 Score = 25.4 bits (55), Expect = 2.7
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 6/54 (11%)

Query: 67  YSRKAKYLLADCNEAFVKIKMAFRPGMVD------LPEDNREAAVNAITLPEVF 114
               AK LL    + F  I +    G+ D      L           +T+P+VF
Sbjct: 16  PCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVF 69


>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 74

 Score = 24.6 bits (53), Expect = 5.5
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 155 FALPGRPIPARALFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDG 204
           F + GR    R +F   ++ +ED  + +   P    +     +  +E+DG
Sbjct: 8   FNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILEVDG 57


>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
          Length = 106

 Score = 24.7 bits (54), Expect = 7.1
 Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 5/26 (19%)

Query: 4  AQFVLAKKGPLARIWLAA-----HWD 24
          ++ ++ ++ PL ++WLA      H+D
Sbjct: 47 SKIIINRQEPLHQVWLATKQGGYHFD 72


>d2iv2x1 b.52.2.2 (X:565-715) Formate dehydrogenase H {Escherichia
           coli [TaxId: 562]}
          Length = 151

 Score = 25.0 bits (54), Expect = 9.0
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 10/71 (14%)

Query: 64  VRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETTMPE 123
           V ++SRK             ++      G + +       A N +    +     T  PE
Sbjct: 62  VWVHSRKG------KIITRAQVSDRPNKGAIYMTYQWWIGACNELVTENL--SPITKTPE 113

Query: 124 INS--VQFEPV 132
                V+ EP+
Sbjct: 114 YKYCAVRVEPI 124


>d1oe8a2 c.47.1.5 (A:4-84) Class alpha GST {Blood fluke (Schistosoma
           haematobium) [TaxId: 6185]}
          Length = 81

 Score = 23.8 bits (51), Expect = 9.7
 Identities = 9/50 (18%), Positives = 16/50 (32%)

Query: 155 FALPGRPIPARALFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDG 204
           F   GR    R     A + +ED  +     P    +     +  ++I  
Sbjct: 8   FNGRGRAESIRMTLVAAGVNYEDERISFQDWPKIKPTIPGGRLPAVKITD 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,107,538
Number of extensions: 53159
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 18
Length of query: 285
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,254,276
Effective search space: 252109476
Effective search space used: 252109476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)