BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8284
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
Length = 1215
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 40/61 (65%)
Query: 1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
M TPA +A L + L G A GK+ + LEGGY L++LAEG + +L LL DPCP E+ G
Sbjct: 356 MAATPAGFAQLTHLLMGLAGGKLILSLEGGYNLRALAEGVSASLHTLLGDPCPMLESPGA 415
Query: 61 P 61
P
Sbjct: 416 P 416
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPS 62
++P YAHL + L G A G++ +ILEGGY L S++E A R+LL DP P P
Sbjct: 754 VSPEGYAHLTHLLMGLASGRIILILEGGYNLTSISESMAACTRSLLGDPPPLLTLPRPPL 813
Query: 63 ERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDIST-EGVQSTPLHIPRA 115
L +SITET I HR YW + + EG S+ L +A
Sbjct: 814 SGAL--------ASITET----IQVHRRYWRSLRVMKVEDREGPSSSKLVTKKA 855
>sp|Q969S8|HDA10_HUMAN Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1
Length = 669
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
M TP C+AHL L A G+V +LEGGY L+SLAE +T++ LL DP P
Sbjct: 275 MQATPECFAHLTQLLQVLAGGRVCAVLEGGYHLESLAESVCMTVQTLLGDPAPPLSGPMA 334
Query: 61 PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDIS 101
P + L E+I + P+W + QD++
Sbjct: 335 PCQSAL------------ESIQSARAAQAPHWKSLQQQDVT 363
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3
Length = 1149
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%)
Query: 1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
M TPA +AHL + L G A GK+ + LEGGY L++LA+G + +L LL DPCP E+
Sbjct: 355 MAATPAGFAHLTHLLMGLAGGKLILSLEGGYNLRALAKGVSASLHTLLGDPCPMLESCVV 414
Query: 61 P 61
P
Sbjct: 415 P 415
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPS 62
+TP YAHL + L G A G++ +ILEGGY L S++E A +LL DP P L P
Sbjct: 753 VTPEGYAHLTHLLMGLAGGRIILILEGGYNLASISESMAACTHSLLGDPPPQLTLLRPPQ 812
Query: 63 ERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDI 100
AL+S S + I HR YW + +
Sbjct: 813 SG-----ALVSISEV-------IQVHRKYWRSLRLMKM 838
>sp|Q6P3E7|HDA10_MOUSE Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=2
Length = 666
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
M TP C+AHL L A G++ +LEGGY L+SLA+ + ++ LL DP P L
Sbjct: 275 MQATPECFAHLTQLLQVLAGGRICAVLEGGYHLESLAQSVCMMVQTLLGDPTPPLLGLMV 334
Query: 61 PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEGVQSTPLHIP 113
P + L E+I + PYW + Q+++ V S+ H P
Sbjct: 335 PCQSAL------------ESIQSVQTAQTPYWTSLQ-QNVAP--VLSSSTHSP 372
>sp|P53973|HDA1_YEAST Histone deacetylase HDA1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HDA1 PE=1 SV=1
Length = 706
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNF-ETLGTP 61
+TP+CY H+ + L A+G + V+LEGGY L ++A A + L+ +P + L P
Sbjct: 350 VTPSCYGHMTHMLKSLARGNLCVVLEGGYNLDAIARSALSVAKVLIGEPPDELPDPLSDP 409
Query: 62 SERILFIYALLSFSSITETILNCIYEHRPYWNCYK 96
++ E I I YWNC++
Sbjct: 410 KPEVI------------EMIDKVIRLQSKYWNCFR 432
>sp|P56523|CLR3_SCHPO Histone deacetylase clr3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr3 PE=1 SV=1
Length = 687
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPS 62
+TPA YAH+ L G A GKV + LEGGY L S++ A ++L LG P
Sbjct: 339 LTPAAYAHMTQMLMGLADGKVFISLEGGYNLDSISTSALAVAQSL----------LGIPP 388
Query: 63 ERILFIYALLSFSSITETILNCIYEHRPYWNCYK 96
R+ YA TI + YW C +
Sbjct: 389 GRLHTTYAC---PQAVATINHVTKIQSQYWRCMR 419
>sp|O17323|HDA4_CAEEL Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=3
Length = 869
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 2 DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALL--DDPCPNFETLG 59
++TP + ++ SL +A GKV + LEGGY LKS++E A ++AL+ D ++
Sbjct: 751 EVTPEMFGYMTKSLLNYASGKVVLALEGGYDLKSISEAAQQCVQALIGESDDAGRLSSVA 810
Query: 60 TPSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQD 99
S L S ET+ I H+ YW Q+
Sbjct: 811 LES---------LPNPSAVETLQKVIAIHKSYWPALHGQE 841
>sp|Q8RX28|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1
Length = 660
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDD 50
+TP Y+ +L L FAQGK+ + LEGGY L S+A+ + ++ LL+D
Sbjct: 303 VTPYGYSVMLKKLMEFAQGKIVLALEGGYNLDSIAKSSLACVQVLLED 350
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
M +TP Y+H+L L AQG++ V+LEGGY + A +R LL + E
Sbjct: 285 MCLTPDGYSHILYHLKSLAQGRMLVVLEGGYNHQISAVAVQRCVRVLLGYAPFSIELNEA 344
Query: 61 PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKF 97
P E S ++ ++ + R +WNC+ +
Sbjct: 345 PKE------------STVDSCVSLVSVLRHHWNCFDY 369
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 20/112 (17%)
Query: 3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGA-----ALTLRALLDDPCPNFET 57
+TP +A + L+ A G++ +LEGGY L S++ A L R++L E
Sbjct: 703 VTPETFALMTYQLSSLAGGRIITVLEGGYNLTSISNSAQAVCEVLQNRSMLRRLREEKEQ 762
Query: 58 LGTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEGVQSTP 109
T ++I SS +TI + YW+ K G Q TP
Sbjct: 763 FATKPQKIE--------SSCIKTIREVCAVQQKYWSILK-------GFQVTP 799
>sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=2
Length = 552
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 2 DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALL-DDPCPNFETLGT 60
D+TPA Y+ + L GK+ VILEGGY L+S++ A ++ LL ++P T
Sbjct: 415 DVTPAGYSRMTQMLGDLCGGKMLVILEGGYNLRSISASATAVIKVLLGENPENELPIATT 474
Query: 61 PS 62
PS
Sbjct: 475 PS 476
>sp|Q8LRK8|HDA18_ARATH Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1
Length = 682
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDD 50
+TP Y+ +L L FA GK+ + LEGGY L+SL + + ++ LL+D
Sbjct: 336 VTPYGYSVMLKKLMEFAHGKIVLALEGGYNLESLGKSSLACVQVLLED 383
>sp|Q613L4|HDA4_CAEBR Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1
Length = 892
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 2 DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTP 61
+ITP + ++ L +A GKV + LEGGY L S++ A ++AL+ + + L T
Sbjct: 771 EITPEMFGYMTKCLLSYANGKVVLALEGGYNLDSISAAAEQCVQALIGE-SDDAGRLCTD 829
Query: 62 SERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQD 99
S L S ET+ I H+ +W Q+
Sbjct: 830 S------LENLPNQSALETLQKVIAIHKGFWPALHGQE 861
>sp|P56524|HDAC4_HUMAN Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3
Length = 1084
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 2 DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLD---DPCPNFETL 58
+++ C+ +L L G A G++ + LEGG+ L ++ + + + ALL DP P
Sbjct: 947 NLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQ 1006
Query: 59 GTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEG 104
P+ A+ S + E H YW C + + ST G
Sbjct: 1007 QRPNAN-----AVRSMEKVMEI-------HSKYWRCLQ-RTTSTAG 1039
>sp|P83038|HDAC4_CHICK Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1
Length = 1080
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 2 DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLD---DPCPNFETL 58
+++ C+ +L L G A G+V + LEGG+ L ++ + + + ALL DP P
Sbjct: 943 NLSAKCFGYLTKQLMGLAGGRVVLALEGGHDLTAICDASEACVSALLGNELDPLP----- 997
Query: 59 GTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYK 96
E++L A ++ ++ I H YW+ +
Sbjct: 998 ----EKVLQQRA---NANAVHSMEKVIEIHSKYWHSLQ 1028
>sp|Q9UKV0|HDAC9_HUMAN Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2
Length = 1011
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDD 50
+T C+ HL L A G+V + LEGG+ L ++ + + + ALL +
Sbjct: 928 VTAKCFGHLTKQLMTLADGRVVLALEGGHDLTAICDASEACVNALLGN 975
>sp|Q9Z2V6|HDAC5_MOUSE Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2
Length = 1113
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALL 48
+T C+ HL L A G+V + LEGG+ L ++ + + + ALL
Sbjct: 969 VTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALL 1014
>sp|Q5R902|HDAC5_PONAB Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=2 SV=1
Length = 1122
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALL 48
+T C+ HL L A G+V + LEGG+ L ++ + + + ALL
Sbjct: 978 VTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALL 1023
>sp|Q9UQL6|HDAC5_HUMAN Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=1 SV=2
Length = 1122
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALL 48
+T C+ HL L A G+V + LEGG+ L ++ + + + ALL
Sbjct: 978 VTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALL 1023
>sp|Q6NZM9|HDAC4_MOUSE Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1
Length = 1076
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 2 DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLD---DPCPNFETL 58
+++ C+ +L L G A G++ + LEGG+ L ++ + + + ALL +P P
Sbjct: 939 NLSAKCFGYLTKQLMGLAGGRLVLALEGGHDLTAICDASEACVSALLGNELEPLP----- 993
Query: 59 GTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYK 96
E++L + E +++ H YW C +
Sbjct: 994 ----EKVLHQRPNANAVHSMEKVMDI---HSKYWRCLQ 1024
>sp|Q99P99|HDAC4_RAT Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2
Length = 1077
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 2 DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLD---DPCPNFETL 58
+++ C+ +L L G A G++ + LEGG+ L ++ + + + ALL +P P
Sbjct: 940 NLSAKCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELEPLP----- 994
Query: 59 GTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYK 96
E++L + E ++ H YW C +
Sbjct: 995 ----EKVLHQRPNANAVHSMEKVMGI---HSEYWRCLQ 1025
>sp|Q80ZH1|HDAC5_CRIGR Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1
Length = 1111
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALL 48
+T C+ HL L A G+V + LEGG+ L ++ + + + ALL
Sbjct: 967 VTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALL 1012
>sp|Q8C2B3|HDAC7_MOUSE Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2
Length = 938
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLD---DPCPNFETLG 59
++ C+ ++ L A G V + LEGG+ L ++ + + + ALL DP
Sbjct: 802 VSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNKVDPLSEESWKQ 861
Query: 60 TPSERILFIYALLSFSSITETILNCIYEHRPYWNCYK 96
P+ + A+ S ++ HR YW C +
Sbjct: 862 KPN-----LSAIRSLEAVVRV-------HRKYWGCMQ 886
>sp|Q8WUI4|HDAC7_HUMAN Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2
Length = 952
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPS 62
++ C+ ++ L A G V + LEGG+ L ++ + + + ALL + G
Sbjct: 815 VSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQ 874
Query: 63 ERILFIYALLSFSSITETILNCIYEHRPYWNCYK 96
+ L A+ S ++ I H YW C +
Sbjct: 875 KPNL--NAIRSLEAV-------IRVHSKYWGCMQ 899
>sp|Q941D6|HDA14_ARATH Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1
Length = 423
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 1 MDITPACYAHLLNSLTGFAQ----GKVAVILEGGYCLKSLAEGAALTLRALLDD 50
+ T A Y L + A+ G+ LEGGY L+SL+ A + RALL +
Sbjct: 336 LQFTTATYYSLAKDIKRLAKEVCGGRCVFFLEGGYNLESLSSSVADSFRALLGE 389
>sp|B9MEZ2|GPMA_ACIET 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
OS=Acidovorax ebreus (strain TPSY) GN=gpmA PE=3 SV=1
Length = 247
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 34 KSLAEGAALTLRALLDDPCPNFETLGTPSERILFIYALLSFSSI--TETILNCIYEHRPY 91
K + L R D P P ET SER YA L + TE + + + PY
Sbjct: 103 KQYGDAQVLVWRRSYDTPPPALETTDPRSERGDLRYAGLQAGEVPLTECLKDTVARVLPY 162
Query: 92 WN 93
WN
Sbjct: 163 WN 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,236,635
Number of Sequences: 539616
Number of extensions: 2411290
Number of successful extensions: 4093
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4064
Number of HSP's gapped (non-prelim): 32
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)