Query psy8284
Match_columns 170
No_of_seqs 178 out of 891
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 23:33:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1343|consensus 99.4 3.7E-13 8.1E-18 129.1 8.6 84 2-97 710-796 (797)
2 KOG1343|consensus 98.8 4.2E-09 9.2E-14 101.5 5.0 90 1-103 307-396 (797)
3 PTZ00346 histone deacetylase; 98.4 6E-07 1.3E-11 81.7 6.6 52 1-53 289-340 (429)
4 COG0123 AcuC Deacetylases, inc 98.3 1.7E-06 3.7E-11 76.5 6.1 52 1-52 260-314 (340)
5 PTZ00063 histone deacetylase; 97.8 3.3E-05 7.1E-10 70.6 6.0 49 1-50 271-319 (436)
6 PF09757 Arb2: Arb2 domain; I 84.2 0.89 1.9E-05 36.4 2.6 22 76-97 13-34 (178)
7 KOG1342|consensus 73.6 7.3 0.00016 35.8 5.3 51 2-53 274-324 (425)
8 PF09846 DUF2073: Uncharacteri 35.5 40 0.00086 25.5 2.7 40 23-62 21-60 (104)
9 COG3365 Uncharacterized protei 34.0 45 0.00099 25.5 2.8 26 23-48 34-59 (118)
10 PF11623 DUF3252: Protein of u 29.8 3.8 8.3E-05 27.3 -3.1 21 10-30 19-39 (53)
11 PF13075 DUF3939: Protein of u 28.9 36 0.00078 27.0 1.6 78 80-159 11-97 (140)
12 KOG3717|consensus 25.2 82 0.0018 30.4 3.5 78 2-91 410-490 (612)
13 PRK10553 assembly protein for 23.6 2.8E+02 0.0061 19.9 5.4 27 4-30 15-51 (87)
14 PF13021 DUF3885: Domain of un 23.5 1.3E+02 0.0028 18.6 3.0 32 126-157 2-34 (38)
15 cd07047 BMC_PduB_repeat1 1,2-p 23.0 1.1E+02 0.0024 23.9 3.4 30 20-49 76-105 (134)
16 PF00159 Hormone_3: Pancreatic 20.7 2.1E+02 0.0046 17.5 3.6 19 137-155 12-30 (36)
17 PF12237 PCIF1_WW: Phosphoryla 20.5 2.6E+02 0.0055 22.9 5.1 46 120-165 90-143 (176)
18 cd07225 Pat_PNPLA6_PNPLA7 Pata 20.4 1.6E+02 0.0034 25.7 4.1 35 13-50 6-40 (306)
No 1
>KOG1343|consensus
Probab=99.42 E-value=3.7e-13 Score=129.11 Aligned_cols=84 Identities=32% Similarity=0.636 Sum_probs=75.1
Q ss_pred ccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCCCCCCC---CCCchHHHHHHhhhchhhHH
Q psy8284 2 DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETL---GTPSERILFIYALLSFSSIT 78 (170)
Q Consensus 2 ~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p~l~~~---~~p~~~~~~~~~~~~~~~~~ 78 (170)
.+|++||++||+.|+++|+||++++||||||+.+++++..+|+++|+|.+.|.+++. ..|+. .++
T Consensus 710 ~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~~~~~~~~~~~~~------------~a~ 777 (797)
T KOG1343|consen 710 KVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACVRALLGDSLPPLSEAYLPQKPNS------------NAV 777 (797)
T ss_pred cccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCCccccccCCCcch------------HHH
Confidence 589999999999999999999999999999999999999999999999987765433 33333 689
Q ss_pred HHHHHHHHHHcCCCCcccc
Q psy8284 79 ETILNCIYEHRPYWNCYKF 97 (170)
Q Consensus 79 etI~~v~~~h~~yWk~Lq~ 97 (170)
.+|++++.+|++||+|++.
T Consensus 778 ~~l~~~~~~~~~~w~~~~~ 796 (797)
T KOG1343|consen 778 ATLEKVIEVQSKYWSCLQG 796 (797)
T ss_pred HHHHHHHHhhhcccccccC
Confidence 9999999999999999984
No 2
>KOG1343|consensus
Probab=98.81 E-value=4.2e-09 Score=101.51 Aligned_cols=90 Identities=30% Similarity=0.503 Sum_probs=77.3
Q ss_pred CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCCCCCCCCCCchHHHHHHhhhchhhHHHH
Q psy8284 1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERILFIYALLSFSSITET 80 (170)
Q Consensus 1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p~l~~~~~p~~~~~~~~~~~~~~~~~et 80 (170)
|.+||.+|++++++.+-+.++++++++||||+++.++++ ..++..|+|++++.+.....|+. ++.++
T Consensus 307 m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~~-~~~~~~llg~~~~~~~~~~~p~~------------~~~e~ 373 (797)
T KOG1343|consen 307 MAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQS-QLVLNKLLGKPIEQLRQPGSPKE------------EAEEE 373 (797)
T ss_pred ccCCcccHHHHhccccccccCccceecchhHHHHHHHHh-hhhHHhhcCCCccccccCCCchH------------HHHHH
Confidence 778999999999995555559999999999999999999 99999999998886655555666 88999
Q ss_pred HHHHHHHHcCCCCccccccCccc
Q psy8284 81 ILNCIYEHRPYWNCYKFQDISTE 103 (170)
Q Consensus 81 I~~v~~~h~~yWk~Lq~~~~~~~ 103 (170)
+..+...+.+||+|++.+.....
T Consensus 374 ~~~~~~~~~~~w~~~~~~~~~~~ 396 (797)
T KOG1343|consen 374 LQSVQAVQEDRWPCEGGSTSADS 396 (797)
T ss_pred hhhhHHHhhcccccccCCcchhh
Confidence 99999999999999997655444
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=98.39 E-value=6e-07 Score=81.67 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=48.8
Q ss_pred CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCC
Q psy8284 1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCP 53 (170)
Q Consensus 1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p 53 (170)
|+||++||.++++.++++ ++|++++|||||++.++++|+..++..|+|.+.+
T Consensus 289 l~LT~~g~~~~~~~l~~~-~~plv~vleGGY~~~~lar~w~~~t~~l~g~~i~ 340 (429)
T PTZ00346 289 LNLSSFGHGQCVQAVRDL-GIPMLALGGGGYTIRNVAKLWAYETSILTGHPLP 340 (429)
T ss_pred ceeCHHHHHHHHHHHHhc-CCCEEEEeCCcCCccHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999997 5899999999999999999999999999998755
No 4
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.26 E-value=1.7e-06 Score=76.54 Aligned_cols=52 Identities=31% Similarity=0.438 Sum_probs=48.2
Q ss_pred CccCHHHHHHHHHHHhccC---CCcEEEEecCCCCcchhHHHHHHHHHHHcCCCC
Q psy8284 1 MDITPACYAHLLNSLTGFA---QGKVAVILEGGYCLKSLAEGAALTLRALLDDPC 52 (170)
Q Consensus 1 m~vT~~gy~~lt~~L~~lA---~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~ 52 (170)
|+||.++|.+++++++++| +++++++|||||++++++.++.+++..|.|.+.
T Consensus 260 ~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~~~ 314 (340)
T COG0123 260 LNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLAGLAGLVE 314 (340)
T ss_pred eecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHHHHcCCCc
Confidence 6899999999999999998 469999999999999999999999999999653
No 5
>PTZ00063 histone deacetylase; Provisional
Probab=97.83 E-value=3.3e-05 Score=70.63 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=46.0
Q ss_pred CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCC
Q psy8284 1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDD 50 (170)
Q Consensus 1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~ 50 (170)
|+||.+||+.+++.++++ ++++++++||||++.++++|+......++|.
T Consensus 271 l~Lt~~g~~~~~~~~~~~-~~pil~l~gGGY~~~~lar~w~~~t~~~~~~ 319 (436)
T PTZ00063 271 FNLTIKGHAACVEFVRSL-NIPLLVLGGGGYTIRNVARCWAYETGVILNK 319 (436)
T ss_pred cccCHHHHHHHHHHHHhc-CCCEEEEeCccCCchHHHHHHHHHHHHHhCC
Confidence 589999999999999996 5899999999999999999999999999985
No 6
>PF09757 Arb2: Arb2 domain; InterPro: IPR019154 The fission yeast Argonaute siRNA chaperone (ARC) complex contains the Argonaute protein Ago1 and two previously uncharacterised proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation []. This entry represents a region found in both Arb2 and the Hda1 protein. ; PDB: 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G.
Probab=84.22 E-value=0.89 Score=36.36 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHcCCCCcccc
Q psy8284 76 SITETILNCIYEHRPYWNCYKF 97 (170)
Q Consensus 76 ~~~etI~~v~~~h~~yWk~Lq~ 97 (170)
++.+++.+++..|++||+||..
T Consensus 13 ~a~~~v~~v~~~qs~yw~~l~~ 34 (178)
T PF09757_consen 13 SAFETVKNVRRIQSKYWKCLNP 34 (178)
T ss_dssp HHHHHHHHHHHHHTTT-GGGTS
T ss_pred HHeeeHHHHHHHHHHHHHHhcC
Confidence 8899999999999999999964
No 7
>KOG1342|consensus
Probab=73.60 E-value=7.3 Score=35.76 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=44.0
Q ss_pred ccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCC
Q psy8284 2 DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCP 53 (170)
Q Consensus 2 ~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p 53 (170)
+||..|-+.-...++++- -+++++-.|||++.+.++|..---..++|...+
T Consensus 274 nLsi~Gh~~Cv~fvksfn-~pllvlGGGGYT~rNVARcWtYeT~v~~~~~~~ 324 (425)
T KOG1342|consen 274 NLSIKGHAECVKFVKSFN-LPLLVLGGGGYTLRNVARCWTYETGVLLDQELP 324 (425)
T ss_pred eecchhHHHHHHHHHHcC-CcEEEecCCccchhhhHHHHHHHhhhhcCcccc
Confidence 688899999999999974 789999999999999999998877788886543
No 8
>PF09846 DUF2073: Uncharacterized protein conserved in archaea (DUF2073); InterPro: IPR012017 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.53 E-value=40 Score=25.47 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=28.9
Q ss_pred EEEEecCCCCcchhHHHHHHHHHHHcCCCCCCCCCCCCCc
Q psy8284 23 VAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPS 62 (170)
Q Consensus 23 vv~vLEGGY~l~~la~sv~a~l~~Llg~~~p~l~~~~~p~ 62 (170)
-++|||+|-.++.-++-...+.....-+..+.+.....|.
T Consensus 21 ~IvVLE~GLtPeEe~~LIE~TM~eI~~d~F~GIEiesyp~ 60 (104)
T PF09846_consen 21 NIVVLEEGLTPEEESKLIEMTMTEIDPDEFSGIEIESYPS 60 (104)
T ss_pred cEEEEcCCCChHHHHHHHHHHHHhcCccccCceEEEecCc
Confidence 4789999999999888888888877655555444333343
No 9
>COG3365 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.02 E-value=45 Score=25.53 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=21.8
Q ss_pred EEEEecCCCCcchhHHHHHHHHHHHc
Q psy8284 23 VAVILEGGYCLKSLAEGAALTLRALL 48 (170)
Q Consensus 23 vv~vLEGGY~l~~la~sv~a~l~~Ll 48 (170)
=++|||||-+++..++-...+.+...
T Consensus 34 ~IlVLE~gL~P~eeaklIe~TM~eId 59 (118)
T COG3365 34 DILVLEGGLTPEEEAKLIEMTMSEID 59 (118)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHhcC
Confidence 47899999999999988888877654
No 10
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=29.80 E-value=3.8 Score=27.28 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=16.0
Q ss_pred HHHHHHhccCCCcEEEEecCC
Q psy8284 10 HLLNSLTGFAQGKVAVILEGG 30 (170)
Q Consensus 10 ~lt~~L~~lA~grvv~vLEGG 30 (170)
.....++..++|+..+++|||
T Consensus 19 ~y~G~VQRvsdgkaaVLFEGG 39 (53)
T PF11623_consen 19 GYEGFVQRVSDGKAAVLFEGG 39 (53)
T ss_dssp T-EEEEEEEETTEEEEEEEET
T ss_pred hheEEEEEeeCCeEEEEecCC
Confidence 334456677799999999998
No 11
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=28.94 E-value=36 Score=26.99 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCCCccccccCccc-ccCCCCcccc--ceeeeccCCCCCcccccCCcccCCCHHH------HHHHHHHHH
Q psy8284 80 TILNCIYEHRPYWNCYKFQDISTE-GVQSTPLHIP--RAEFKYEGNPKQEIYATRDCYPIQSQEF------VRLCDERLD 150 (170)
Q Consensus 80 tI~~v~~~h~~yWk~Lq~~~~~~~-~~~~~~~~~~--~~~~~~g~~~~~~~y~tr~~~~~~~~~~------~~~~~~~l~ 150 (170)
++.+++++-.+|=.-++..-.++. -.+. .-... -+-|+ |+-+..+.|=+|++|-.+.++. ++.++.-+|
T Consensus 11 Tldevr~Av~~f~~~lp~gi~rt~lv~~d-~~iD~~~L~~yL-~g~p~q~FymSkeTyeifeeee~~ip~~iD~VQ~AVD 88 (140)
T PF13075_consen 11 TLDEVRRAVHQFEEDLPKGINRTILVNDD-QSIDFERLAPYL-GGIPDQRFYMSKETYEIFEEEEKDIPKEIDKVQKAVD 88 (140)
T ss_pred cHHHHHHHHHHHHHhCccCCceEEEEcCC-ceecHHHHhhhc-CCCCCcceeeeHHHHHhhhHHHHhCHHHHHHHHHHHH
Confidence 566676666666555543333333 1111 11111 22488 9999999999999998886554 777888888
Q ss_pred HHHHhhcce
Q psy8284 151 SLIAKASPV 159 (170)
Q Consensus 151 ~~~~~~~~~ 159 (170)
.+.+++.-.
T Consensus 89 ~Y~~e~~~l 97 (140)
T PF13075_consen 89 QYVKETGKL 97 (140)
T ss_pred HHHHhcCcc
Confidence 888877643
No 12
>KOG3717|consensus
Probab=25.19 E-value=82 Score=30.43 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=46.3
Q ss_pred ccCHHHHHHHHHHHhccC-CCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCCCCCCCCCCch--HHHHHHhhhchhhHH
Q psy8284 2 DITPACYAHLLNSLTGFA-QGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSE--RILFIYALLSFSSIT 78 (170)
Q Consensus 2 ~vT~~gy~~lt~~L~~lA-~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p~l~~~~~p~~--~~~~~~~~~~~~~~~ 78 (170)
.+||.+|-+|+-+|.... -|+++..-| .|.+|-+.+.....+......+- .+.|++..++..+-.
T Consensus 410 k~SPDaFIQmalQLA~yk~h~~l~aTYE------------SAslR~F~~GRtdtIRS~s~esL~fv~am~~~~v~~~ek~ 477 (612)
T KOG3717|consen 410 KLSPDAFIQMALQLAFYKLHGRLVATYE------------SASLRRFHEGRTDTIRSASTESLEFVKAMDDSSVPKSEKL 477 (612)
T ss_pred CcCchHHHHHHHHHHHHHHhcccCcchh------------hhhhhhhcCCcccccccCCHHHHHHHHHhhCCCCCHHHHH
Confidence 589999988777666544 566666555 23455554433332221111111 244445456666778
Q ss_pred HHHHHHHHHHcCC
Q psy8284 79 ETILNCIYEHRPY 91 (170)
Q Consensus 79 etI~~v~~~h~~y 91 (170)
+.++.++..|+.|
T Consensus 478 ~llr~Av~~h~~y 490 (612)
T KOG3717|consen 478 ELLRKAVQAHTKY 490 (612)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888887
No 13
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=23.62 E-value=2.8e+02 Score=19.94 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHhccC----------CCcEEEEecCC
Q psy8284 4 TPACYAHLLNSLTGFA----------QGKVAVILEGG 30 (170)
Q Consensus 4 T~~gy~~lt~~L~~lA----------~grvv~vLEGG 30 (170)
.|+-...+...|..+. .||+++++||.
T Consensus 15 ~Pe~~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~ 51 (87)
T PRK10553 15 KSERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAE 51 (87)
T ss_pred ChHHHHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeC
Confidence 4555666666666655 48999999998
No 14
>PF13021 DUF3885: Domain of unknown function (DUF3885)
Probab=23.48 E-value=1.3e+02 Score=18.62 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=25.9
Q ss_pred cccccCCcccC-CCHHHHHHHHHHHHHHHHhhc
Q psy8284 126 EIYATRDCYPI-QSQEFVRLCDERLDSLIAKAS 157 (170)
Q Consensus 126 ~~y~tr~~~~~-~~~~~~~~~~~~l~~~~~~~~ 157 (170)
.+|+-|||... .+++.+..+.++-++.|.++.
T Consensus 2 h~YDDRGcdvia~~~~~i~~ly~~y~~WIldYd 34 (38)
T PF13021_consen 2 HLYDDRGCDVIANNKERIRPLYEKYNDWILDYD 34 (38)
T ss_pred CcccCCCcEEeeCCHHHHHHHHHHHHHHHHhcc
Confidence 46899999976 567788889999998887754
No 15
>cd07047 BMC_PduB_repeat1 1,2-propanediol utilization protein B (PduB), Bacterial Micro-Compartment (BMC) domain repeat 1. PduB proteins are homologs of the carboxysome shell protein. They are encoded within the pdu operon and might be required for the formation of the outer shell of the bacterial pdu polyhedral organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduB might form hexamers and further assemble into the flat facets of the polyhedral outer shell of pdu organelles at present no experimental evidence directly supports this view. PduB proteins contain two tandem BMC domains repeats. This CD contains repeat 1 (the first BMC domain of PduB).
Probab=22.99 E-value=1.1e+02 Score=23.92 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=24.5
Q ss_pred CCcEEEEecCCCCcchhHHHHHHHHHHHcC
Q psy8284 20 QGKVAVILEGGYCLKSLAEGAALTLRALLD 49 (170)
Q Consensus 20 ~grvv~vLEGGY~l~~la~sv~a~l~~Llg 49 (170)
+|+-.+++-|||++.+...++.+.+..+..
T Consensus 76 gGkg~vvitGg~dVs~V~~aVeaa~~~v~~ 105 (134)
T cd07047 76 AGHGSLILFGAEDVSDVRRAVEVALSETEK 105 (134)
T ss_pred CceEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 468889999999999988888777776643
No 16
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=20.72 E-value=2.1e+02 Score=17.46 Aligned_cols=19 Identities=21% Similarity=0.043 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy8284 137 QSQEFVRLCDERLDSLIAK 155 (170)
Q Consensus 137 ~~~~~~~~~~~~l~~~~~~ 155 (170)
.+.|+.+.+...|++++..
T Consensus 12 aspeel~~Y~~~L~~Y~~l 30 (36)
T PF00159_consen 12 ASPEELAQYYAALRHYINL 30 (36)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 6789999999999998864
No 17
>PF12237 PCIF1_WW: Phosphorylated CTD interacting factor 1 WW domain; InterPro: IPR022035 This domain is found in bacteria and eukaryotes, and is approximately 180 amino acids in length. It is the WW domain of PCIF1. PCIF1 interacts with phosphorylated RNA polymerase II carboxy-terminal domain (CTD). The WW domain of PCIF1 can directly and preferentially bind to the phosphorylated CTD compared to the unphosphorylated CTD. PCIF1 binds to the hyperphosphorylated RNAP II (RNAP IIO) in vitro and in vivo. Double immunofluorescence labeling in HeLa cells demonstrated that PCIF1 and endogenous RNAP IIO are co-localized in the cell nucleus. Thus, PCIF1 may play a role in mRNA synthesis by modulating RNAP IIO activity.
Probab=20.46 E-value=2.6e+02 Score=22.88 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=33.0
Q ss_pred cCC-CCCcccccCCcc---cCCCHHHHHHHHHHHHHHH-H--hhcce-EEEecC
Q psy8284 120 EGN-PKQEIYATRDCY---PIQSQEFVRLCDERLDSLI-A--KASPV-LVVLSP 165 (170)
Q Consensus 120 g~~-~~~~~y~tr~~~---~~~~~~~~~~~~~~l~~~~-~--~~~~~-~~~~~~ 165 (170)
|.. ...+..+.+++| |+..+|.+++..+.+..++ + .+.|. .||+-|
T Consensus 90 GS~GsFf~f~p~~Gsfe~NPPF~~elm~~~~~h~~~~L~~~~~~~~LsFvvvvP 143 (176)
T PF12237_consen 90 GSLGSFFDFEPVSGSFEANPPFDEELMERMVNHIERLLRAENSSEPLSFVVVVP 143 (176)
T ss_pred cCCcchhcccCCCCceeeCCCCCHHHHHHHHHHHHHHHHhccccCceEEEEEec
Confidence 653 234677788887 9999999999999999999 2 33443 344455
No 18
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=20.44 E-value=1.6e+02 Score=25.68 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=20.5
Q ss_pred HHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCC
Q psy8284 13 NSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDD 50 (170)
Q Consensus 13 ~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~ 50 (170)
++-+.+.+.++.+||||| ..-.-.-..++++|...
T Consensus 6 rl~r~l~~~~~gLvL~GG---G~RG~ahiGvL~aLee~ 40 (306)
T cd07225 6 RLARVLTGNSIALVLGGG---GARGCAHIGVIKALEEA 40 (306)
T ss_pred HHHHHhcCCCEEEEECCh---HHHHHHHHHHHHHHHHc
Confidence 334444556899999999 22222234556666543
Done!