Query psy8284
Match_columns 170
No_of_seqs 178 out of 891
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:33:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pqp_A HD7A, histone deacetyla 99.7 6.1E-18 2.1E-22 151.1 9.2 86 1-98 331-419 (421)
2 2vqm_A HD4, histone deacetylas 99.6 5.4E-16 1.9E-20 138.1 9.1 86 1-98 302-390 (413)
3 1zz1_A Histone deacetylase-lik 98.9 2.3E-09 7.9E-14 94.2 6.7 84 1-92 278-365 (369)
4 1c3p_A Protein (HDLP (histone 98.5 5.9E-08 2E-12 85.4 5.3 52 1-53 268-319 (375)
5 4a69_A Histone deacetylase 3,; 98.4 5.3E-07 1.8E-11 79.5 7.5 52 1-53 269-320 (376)
6 3max_A HD2, histone deacetylas 98.3 1.4E-06 4.8E-11 76.6 6.8 52 1-53 268-319 (367)
7 3ew8_A HD8, histone deacetylas 98.3 1.6E-06 5.6E-11 76.7 7.2 52 1-53 277-328 (388)
8 4a1x_C CP5-46-A peptide; hydro 42.2 14 0.00046 20.0 1.6 14 21-34 4-18 (26)
9 2jz2_A SSL0352 protein; SH3-li 25.9 19 0.00065 24.0 0.6 19 12-30 21-39 (66)
10 1fyx_A TOLL-like receptor 2; b 15.8 75 0.0026 23.2 2.1 22 145-166 50-71 (149)
No 1
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=99.73 E-value=6.1e-18 Score=151.11 Aligned_cols=86 Identities=22% Similarity=0.451 Sum_probs=76.3
Q ss_pred CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCCCCC---CCCCCchHHHHHHhhhchhhH
Q psy8284 1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFE---TLGTPSERILFIYALLSFSSI 77 (170)
Q Consensus 1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p~l~---~~~~p~~~~~~~~~~~~~~~~ 77 (170)
|+||+++|++|+++|+.+|+||++++||||||+++|++|+.+++++|+|++++.+. ....|+. ++
T Consensus 331 ~~lt~~~y~~~~~~l~~~a~grvv~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~l~~~~~~~~p~~------------~a 398 (421)
T 2pqp_A 331 YHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNL------------NA 398 (421)
T ss_dssp CBBCHHHHHHHHHHHTTSGGGCEEEEECSCCCHHHHHHHHHHHHHHHTTCCCCGGGCGGGGSCCCH------------HH
T ss_pred ceeCHHHHHHHHHHHHHHcCCCEEEEECCCCChHHHHHHHHHHHHHHcCCCCCCCcccccccccCH------------HH
Confidence 68999999999999999999999999999999999999999999999998766443 2344555 89
Q ss_pred HHHHHHHHHHHcCCCCccccc
Q psy8284 78 TETILNCIYEHRPYWNCYKFQ 98 (170)
Q Consensus 78 ~etI~~v~~~h~~yWk~Lq~~ 98 (170)
.++|++++.+|++||+||+..
T Consensus 399 ~~~i~~v~~~~~~yW~~l~~~ 419 (421)
T 2pqp_A 399 IRSLEAVIRVHSKYWGCMQRL 419 (421)
T ss_dssp HHHHHHHHHHHTTTCGGGCC-
T ss_pred HHHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999853
No 2
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=99.63 E-value=5.4e-16 Score=138.07 Aligned_cols=86 Identities=22% Similarity=0.515 Sum_probs=75.1
Q ss_pred CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCCCCCC---CCCCchHHHHHHhhhchhhH
Q psy8284 1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFET---LGTPSERILFIYALLSFSSI 77 (170)
Q Consensus 1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p~l~~---~~~p~~~~~~~~~~~~~~~~ 77 (170)
|+||+++|++++++|+++|+||++++||||||+.++++|+.+++++|+|.+.++++. ...|+. ++
T Consensus 302 ~~lt~~~~~~~~~~l~~~a~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~p~~------------~~ 369 (413)
T 2vqm_A 302 YNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNA------------NA 369 (413)
T ss_dssp CCBCHHHHHHHHHHHHTSGGGCEEEEECCCCCHHHHHHHHHHHHHHHTTCCCCCCCHHHHHCCCCH------------HH
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCcCCChHHHHHHHHHHHHHHcCCCCCCCChhhhhcCCCh------------HH
Confidence 689999999999999999999999999999999999999999999999987554321 123444 78
Q ss_pred HHHHHHHHHHHcCCCCccccc
Q psy8284 78 TETILNCIYEHRPYWNCYKFQ 98 (170)
Q Consensus 78 ~etI~~v~~~h~~yWk~Lq~~ 98 (170)
.++|.+++.+|++||+||+..
T Consensus 370 ~~~~~~v~~~~~~~W~~l~~~ 390 (413)
T 2vqm_A 370 VRSMEKVMEIHSKYWRCLQRT 390 (413)
T ss_dssp HHHHHHHHHHHHTTCGGGTSC
T ss_pred HHHHHHHHHHHHHHhhhhhcc
Confidence 999999999999999999964
No 3
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=98.88 E-value=2.3e-09 Score=94.20 Aligned_cols=84 Identities=18% Similarity=0.265 Sum_probs=62.3
Q ss_pred CccCHHHHHHHHHHHhccC----CCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCCCCCCCCCCchHHHHHHhhhchhh
Q psy8284 1 MDITPACYAHLLNSLTGFA----QGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERILFIYALLSFSS 76 (170)
Q Consensus 1 m~vT~~gy~~lt~~L~~lA----~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p~l~~~~~p~~~~~~~~~~~~~~~ 76 (170)
|+||+++|++++++|+++| +||++++|||||+++++++|+.+++++|+|.+. +. .|-.. ... .-+.++
T Consensus 278 l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~--~~---~p~~~--~~~-~~~~~~ 349 (369)
T 1zz1_A 278 MMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRS--LP---DPYHE--FLA-GMGGNT 349 (369)
T ss_dssp CBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCCCTTTHHHHHHHHHHHHHCCCC--CC---CTTHH--HHH-TTCCCS
T ss_pred cccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCCCCccHHHHHHHHHHHHHhCCCC--CC---CchhH--HHh-hccccc
Confidence 6899999999999999886 789999999999999999999999999999764 11 11110 000 111124
Q ss_pred HHHHHHHHHHHHcCCC
Q psy8284 77 ITETILNCIYEHRPYW 92 (170)
Q Consensus 77 ~~etI~~v~~~h~~yW 92 (170)
..+.+.+++...+++|
T Consensus 350 ~~~~~~~~i~~~~~~~ 365 (369)
T 1zz1_A 350 LLDAERAAIEEIVPLL 365 (369)
T ss_dssp CCHHHHHHHHTTGGGG
T ss_pred hHHHHHHHHHHHHHHh
Confidence 4556667777777777
No 4
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=98.55 E-value=5.9e-08 Score=85.41 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=48.7
Q ss_pred CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCC
Q psy8284 1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCP 53 (170)
Q Consensus 1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p 53 (170)
|+||+++|++++++|+++|. +++++|||||++.++++|+.+++++|+|.+.+
T Consensus 268 l~lt~~g~~~~~~~l~~~a~-~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~ 319 (375)
T 1c3p_A 268 FNLSNVAFLKAFNIVREVFG-EGVYLGGGGYHPYALARAWTLIWCELSGREVP 319 (375)
T ss_dssp CCBCHHHHHHHHHHHHHHHC-SCEEECCCCCCHHHHHHHHHHHHHHHHTCCCC
T ss_pred cccCHHHHHHHHHHHHHhcc-ceEEEECCCCChHHHHHHHHHHHHHHcCCCCC
Confidence 68999999999999999984 69999999999999999999999999998755
No 5
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=98.40 E-value=5.3e-07 Score=79.50 Aligned_cols=52 Identities=13% Similarity=0.264 Sum_probs=48.6
Q ss_pred CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCC
Q psy8284 1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCP 53 (170)
Q Consensus 1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p 53 (170)
|+||++||+++++.++++ ++|+++++||||++.++++|+......|+|.+.+
T Consensus 269 l~Lt~~g~~~~~~~l~~~-~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~ 320 (376)
T 4a69_A 269 FNLSIRGHGECVEYVKSF-NIPLLVLGGGGYTVRNVARCWTYETSLLVEEAIS 320 (376)
T ss_dssp CBBCHHHHHHHHHHHHTT-CCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred eecCHHHHHHHHHHHHHc-CCCEEEEECCCCChhHHHHHHHHHHHHhcCCCcc
Confidence 689999999999999998 5899999999999999999999999999998755
No 6
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=98.26 E-value=1.4e-06 Score=76.63 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=48.5
Q ss_pred CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCC
Q psy8284 1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCP 53 (170)
Q Consensus 1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p 53 (170)
|+||++||+++++.++++ ++|+++++||||++.++++|+......++|.+.|
T Consensus 268 ~~lt~~g~~~~~~~~~~~-~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i~ 319 (367)
T 3max_A 268 FNLTVKGHAKCVEVVKTF-NLPLLMLGGGGYTIRNVARCWTYETAVALDCEIP 319 (367)
T ss_dssp CCBCHHHHHHHHHHHHTT-CCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred eeeCHHHHHHHHHHHHhc-CCCEEEEeCCCCChhHHHHHHHHHHHHHhhcccc
Confidence 689999999999999997 6899999999999999999999999999998755
No 7
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=98.25 E-value=1.6e-06 Score=76.72 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=48.4
Q ss_pred CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCC
Q psy8284 1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCP 53 (170)
Q Consensus 1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p 53 (170)
|+||++||+++++.|+++. .++++++||||++.++++|+..+...|+|.+.+
T Consensus 277 l~lt~~g~~~~~~~l~~~~-~p~l~~~gGGY~~~~var~w~~~~~~l~g~~l~ 328 (388)
T 3ew8_A 277 FNMTPVGIGKCLKYILQWQ-LATLILGGGGYNLANTARCWTYLTGVILGKTLS 328 (388)
T ss_dssp CCBCHHHHHHHHHHHHTTC-CEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCC
T ss_pred CcCCHHHHHHHHHHHHhcC-CCEEEEECCCCChhHHHHHHHHHHHHHcCCCCC
Confidence 6899999999999999874 799999999999999999999999999998755
No 8
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=42.23 E-value=14 Score=20.04 Aligned_cols=14 Identities=36% Similarity=0.785 Sum_probs=10.6
Q ss_pred CcEEEEecC-CCCcc
Q psy8284 21 GKVAVILEG-GYCLK 34 (170)
Q Consensus 21 grvv~vLEG-GY~l~ 34 (170)
||++..|.| ||++-
T Consensus 4 grlvylldgpgydpi 18 (26)
T 4a1x_C 4 GRLVYLLDGPGYDPI 18 (26)
T ss_pred ceEEEEecCCCCCce
Confidence 788888887 77753
No 9
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=25.86 E-value=19 Score=24.03 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=15.4
Q ss_pred HHHHhccCCCcEEEEecCC
Q psy8284 12 LNSLTGFAQGKVAVILEGG 30 (170)
Q Consensus 12 t~~L~~lA~grvv~vLEGG 30 (170)
...++.+++|+..+++|||
T Consensus 21 ~G~VQRvsdgkaaVLFEGG 39 (66)
T 2jz2_A 21 EGLVQRVSDGKAAVLFENG 39 (66)
T ss_dssp EEEEEEEETTEEEEEEESS
T ss_pred eEEEEEecCCcEEEEecCC
Confidence 3456677799999999999
No 10
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=15.81 E-value=75 Score=23.18 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhcceEEEecCC
Q psy8284 145 CDERLDSLIAKASPVLVVLSPA 166 (170)
Q Consensus 145 ~~~~l~~~~~~~~~~~~~~~~~ 166 (170)
+.+.|...|.++..++||+||.
T Consensus 50 ~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 50 IIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp HHHHHHHHHHHEEEEEEEECHH
T ss_pred HHHHHHHHHHHcCEEEEEeCcc
Confidence 4667888999999999999984
Done!