RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8284
         (170 letters)



>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 386

 Score = 66.9 bits (162), Expect = 3e-14
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
             ++  C+ ++   L   A G V + LEGG+ L ++ + +   + ALL +        G 
Sbjct: 299 YHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEG- 357

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYWNCYK 96
                   +      +   ++   I  H  YW C +
Sbjct: 358 --------WKQKPNLNAIRSLEAVIRVHSKYWGCMQ 385


>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
           63363]}
          Length = 372

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPN 54
            +++   +    N +     G+   +  GGY   +LA    L    L     P 
Sbjct: 267 FNLSNVAFLKAFNIVREVF-GEGVYLGGGGYHPYALARAWTLIWCELSGREVPE 319


>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 364

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPN 54
            ++TP      L  +  +      ++  GGY L + A         +L     +
Sbjct: 264 FNMTPVGIGKCLKYILQWQ-LATLILGGGGYNLANTARCWTYLTGVILGKTLSS 316


>d2cfua1 d.106.1.3 (A:530-655) Alkylsulfatase SdsA1 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 126

 Score = 26.0 bits (57), Expect = 1.4
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 9/45 (20%)

Query: 12  LNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFE 56
           ++++    +GK+     G              L  +L D    F+
Sbjct: 84  VSAVRLVFEGKLKS--SGN-------PLLLGQLFGMLGDFDFWFD 119


>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
           N-domain {Escherichia coli [TaxId: 562]}
          Length = 239

 Score = 25.9 bits (56), Expect = 2.4
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 57  TLGTPSERILFIYALLSFSSITETILNCIYEHRPYW 92
           TL  P E + F+ A      +  TIL+   +     
Sbjct: 138 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 173


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0446    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 610,970
Number of extensions: 26224
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 5
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)