BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8285
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 265 bits (678), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 158/429 (36%), Positives = 238/429 (55%), Gaps = 29/429 (6%)
Query: 74 DRYVVDRSSYDSLCSHYLL----QQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQS 129
DRY+ RS+ + +LL Q N +T + +E +K L+ L+GF+++ K+L S
Sbjct: 9 DRYIPHRSAAQMEVASFLLSKENQPENSQTPTKKEHQKAWALN--LNGFDVEEAKILRLS 66
Query: 130 -KRTVSPTQFLRTLG-------------KLPRKVKAKPERILEAPSIINDFYTSGLDWGY 175
K +P + L K R + + P+RIL+AP I ND+Y + +DW
Sbjct: 67 GKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSS 126
Query: 176 HDTLAVALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYI 233
+ LAVALD SVY W+ + QLL +E P YIS VAW LAV + E +
Sbjct: 127 GNVLAVALDNSVYLWSASSGDILQLLQMEQP---GEYISSVAWIKEGNYLAVGTSSAE-V 182
Query: 234 DLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD 293
LW Q+++ ++ + +H +V ++ WN +LS G+ G+I H+DVR + ++
Sbjct: 183 QLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 242
Query: 294 VVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWEPTL 351
VCGL+W+P+GR+LASG N N V +W + P H AVKA+AWCPW+ +
Sbjct: 243 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 302
Query: 352 LATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411
LATGGG D+ +R+WN +G V SQV SILWS Y+EL++ HG L +W+Y
Sbjct: 303 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 362
Query: 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSL 471
P + + ELK H R+LS +SPD VA+A+ADET+ +W CF D R+ R+ S+
Sbjct: 363 PTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR-REREKASAA 421
Query: 472 EFAILKQPV 480
+ +++ Q +
Sbjct: 422 KSSLIHQGI 430
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%)
Query: 5 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRE 64
H AVKA+AWCPW+ +LATGGG D+ +R+WN +G V SQV SILWS Y+E
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 345
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 258 bits (659), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 155/423 (36%), Positives = 234/423 (55%), Gaps = 29/423 (6%)
Query: 80 RSSYDSLCSHYLL----QQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQS-KRTVS 134
RS+ + +LL Q N +T + +E +K L+ L+GF+++ K+L S K +
Sbjct: 4 RSAAQMEVASFLLSKENQPENSQTPTKKEHQKAWALN--LNGFDVEEAKILRLSGKPQNA 61
Query: 135 PTQFLRTLG-------------KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAV 181
P + L K R + + P+RIL+AP I ND+Y + +DW + LAV
Sbjct: 62 PEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAV 121
Query: 182 ALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ 239
ALD SVY W+ + QLL +E P YIS VAW LAV + E + LW Q
Sbjct: 122 ALDNSVYLWSASSGDILQLLQMEQP---GEYISSVAWIKEGNYLAVGTSSAE-VQLWDVQ 177
Query: 240 EERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLK 299
+++ ++ + +H +V ++ WN +LS G+ G+I H+DVR + ++ VCGL+
Sbjct: 178 QQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237
Query: 300 WSPNGRYLASGSN-NTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWEPTLLATGGG 357
W+P+GR+LASG N N V +W + P H AVKA+AWCPW+ +LATGGG
Sbjct: 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 358 ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLI 417
D+ +R+WN +G V SQV SILWS Y+EL++ HG L +W+YP + +
Sbjct: 298 TSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357
Query: 418 EELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILK 477
ELK H R+LS +SPD VA+A+ADET+ +W CF D R+ R+ S+ + +++
Sbjct: 358 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR-REREKASAAKSSLIH 416
Query: 478 QPV 480
Q +
Sbjct: 417 QGI 419
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%)
Query: 5 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRE 64
H AVKA+AWCPW+ +LATGGG D+ +R+WN +G V SQV SILWS Y+E
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 334
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 131/315 (41%), Positives = 187/315 (59%), Gaps = 8/315 (2%)
Query: 147 RKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKT-QLL-VEYP 204
R + + P+RIL+AP I ND+Y + +DW + LAVALD SVY W+ + QLL +E P
Sbjct: 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQP 66
Query: 205 TYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLL 264
YIS VAW LAV + E + LW Q+++ ++ + +H +V ++ WN +L
Sbjct: 67 ---GEYISSVAWIKEGNYLAVGTSSAE-VQLWDVQQQKRLRNMTSHSARVGSLSWNSYIL 122
Query: 265 SCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQL 323
S G+ G+I H+DVR + ++ VCGL+W+P+GR+LASG N N V +W
Sbjct: 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182
Query: 324 DAK-RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQ 382
+ P H AVKA+AWCPW+ +LATGGG D+ +R+WN +G V SQ
Sbjct: 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 242
Query: 383 VTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAA 442
V SILWS Y+EL++ HG L +W+YP + + ELK H R+LS +SPD VA+A
Sbjct: 243 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 302
Query: 443 SADETISIWNCFPRD 457
+ADET+ +W CF D
Sbjct: 303 AADETLRLWRCFELD 317
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%)
Query: 5 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRE 64
H AVKA+AWCPW+ +LATGGG D+ +R+WN +G V SQV SILWS Y+E
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 254
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 193/356 (54%), Gaps = 13/356 (3%)
Query: 109 RHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYT 168
R L+F L E KK ++ + P + + T K R+ PER+L+AP II+D+Y
Sbjct: 41 RVLAFKLDAPEA--KKPVDLRTQHNRPQRPVVTPAK--RRFNTTPERVLDAPGIIDDYYL 96
Query: 169 SGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT 228
+ LDW + +AVAL+ +VY WN + L E T ++ Y++ V W + L+V
Sbjct: 97 NLLDWSNLNVVAVALERNVYVWNADSGSVSALAE--TDESTYVASVKWSHDGSFLSV-GL 153
Query: 229 CTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAI 288
+D++ + + ++ + H +V + WN ++LS G+ G I H+DVR + +
Sbjct: 154 GNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL 213
Query: 289 TREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW 347
VCGL W +G LASG N N V+IWD R + P+ H +AVKA+AWCPW
Sbjct: 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR---SSIPKFTKTNHNAAVKAVAWCPW 270
Query: 348 EPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLK 407
+ LLATGGG D+ + WN+ G V SQVTS++WS +E++++HG D +L
Sbjct: 271 QSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330
Query: 408 MWEYPRLHLIEELKI--HQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRK 461
+W Y L +++ I H R+L + LSPD ++ A++DE + W + D ++
Sbjct: 331 IWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%)
Query: 5 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRE 64
H +AVKA+AWCPW+ LLATGGG D+ + WN+ G V SQVTS++WS +E
Sbjct: 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKE 317
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 126/274 (45%), Gaps = 25/274 (9%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243
D +V WN + L++ T ++ + VA+ P +A + + + + LW+ + L
Sbjct: 78 DKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIA-SASDDKTVKLWNRNGQ-L 131
Query: 244 IQKLRTHMHQV--IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWS 301
+Q L H V +A +G ++ + + ++ + +T V G+ +S
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFS 189
Query: 302 PNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQC--HLSAVKAIAWCPWEPTLLATGGGI 358
P+G+ +AS S++ TVK+W+ + Q+ H S+V+ +A+ P T+ +
Sbjct: 190 PDGQTIASASDDKTVKLWN------RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS--- 240
Query: 359 CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE 418
D+TV+LWN + S V + + + + ++ D ++K+W L++
Sbjct: 241 DDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASA--SDDKTVKLWNR-NGQLLQ 297
Query: 419 ELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
L H + SPD +A+AS D+T+ +WN
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 125/274 (45%), Gaps = 25/274 (9%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243
D +V WN Q L + ++ + VA+ P +A + + + + LW+ + L
Sbjct: 324 DKTVKLWNRNGQHLQTLTGH----SSSVWGVAFSPDGQTIA-SASDDKTVKLWNRNGQ-L 377
Query: 244 IQKLRTHMHQV--IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWS 301
+Q L H V +A +G ++ + + ++ + +T V G+ +S
Sbjct: 378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFS 435
Query: 302 PNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQC--HLSAVKAIAWCPWEPTLLATGGGI 358
P+ + +AS S++ TVK+W+ + Q+ H S+V+ +A+ P T+ +
Sbjct: 436 PDDQTIASASDDKTVKLWN------RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS--- 486
Query: 359 CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE 418
D+TV+LWN + S V + +S + + ++ D ++K+W L++
Sbjct: 487 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA--SDDKTVKLWNR-NGQLLQ 543
Query: 419 ELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
L H + SPD +A+AS+D+T+ +WN
Sbjct: 544 TLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 15/168 (8%)
Query: 288 ITREGDVVCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQC--HLSAVKAIAW 344
+T V G+ +SP+G+ +AS S++ TVK+W+ + Q+ H S+V+ +A+
Sbjct: 53 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN------RNGQLLQTLTGHSSSVRGVAF 106
Query: 345 CPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDC 404
P T+ + D+TV+LWN + S V + +S + + ++ D
Sbjct: 107 SPDGQTIASAS---DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA--SDDK 161
Query: 405 SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
++K+W L++ L H + SPD +A+AS D+T+ +WN
Sbjct: 162 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 116/250 (46%), Gaps = 21/250 (8%)
Query: 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQV--IAMCWNGNLLS 265
++ + VA+ P +A + + + + LW+ + L+Q L H V +A +G ++
Sbjct: 16 SSSVRGVAFSPDGQTIA-SASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 266 CGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNN-TVKIWDFRQLD 324
+ + ++ + +T V G+ +SP+G+ +AS S++ TVK+W+
Sbjct: 74 SASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN----- 126
Query: 325 AKRPQVNNQC--HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQ 382
+ Q+ H S+V +A+ P T+ + D+TV+LWN + S
Sbjct: 127 -RNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS---DDKTVKLWNRNGQLLQTLTGHSSS 182
Query: 383 VTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAA 442
V + +S + + ++ D ++K+W L++ L H + SPD +A+A
Sbjct: 183 VWGVAFSPDGQTIASA--SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA 239
Query: 443 SADETISIWN 452
S D+T+ +WN
Sbjct: 240 SDDKTVKLWN 249
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 333 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQY 392
+ H S+V+ +A+ P T+ + D+TV+LWN + S V + +S
Sbjct: 13 EAHSSSVRGVAFSPDGQTIASAS---DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 393 RELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
+ + ++ D ++K+W L++ L H + SPD +A+AS D+T+ +WN
Sbjct: 70 QTIASA--SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 90/178 (50%), Gaps = 15/178 (8%)
Query: 300 WSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGI 358
+SP+G++LA+G+ + ++IWD ++ ++ + Q H + ++ + P L++ G
Sbjct: 131 FSPDGKFLATGAEDRLIRIWD---IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-- 185
Query: 359 CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE 418
D+TVR+W+ G+ + + VT++ S + + + G D ++++W+ L+E
Sbjct: 186 -DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA-GSLDRAVRVWDSETGFLVE 243
Query: 419 ELKI-------HQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGS 469
L H++ + S V + D V + S D ++ +WN + K ++ SG+
Sbjct: 244 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 39/184 (21%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLS-----AVKAIAWCPWE 348
+ L + P+G L SGS + TV+IWD R QC L+ V +A P +
Sbjct: 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLR---------TGQCSLTLSIEDGVTTVAVSPGD 218
Query: 349 PTLLATGGGICDQTVRLWNSMNG--KEKCHVKTDS------QVTSILWSEQYRELVTSHG 400
+A G D+ VR+W+S G E+ + +S V S++++ + +V+ G
Sbjct: 219 GKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS--G 274
Query: 401 KQDCSLKMWEYPRLHLIEELKI------------HQERILSAVLSPDQTCVAAASADETI 448
D S+K+W + + K H++ +LS + + + + S D +
Sbjct: 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 334
Query: 449 SIWN 452
W+
Sbjct: 335 LFWD 338
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 131 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 189
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 245
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 246 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 271
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W +V+ G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 272 KW------IVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 323
Query: 445 DETISIW 451
D+TI +W
Sbjct: 324 DKTIKLW 330
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 101 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 294 VVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLL 352
V +K+SPNG +LAS S + +KIW D K + + H + +AW + LL
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISG-HKLGISDVAWSS-DSNLL 102
Query: 353 ATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412
+ D+T+++W+ +GK +K S L+ S G D S+++W+
Sbjct: 103 VSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVK 159
Query: 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
++ L H + + + + D + + ++S D IW+
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 139
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 140 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIW 198
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 133 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 191
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 192 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 247
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 248 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 273
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W +V+ G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 274 KW------IVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 325
Query: 445 DETISIW 451
D+TI +W
Sbjct: 326 DKTIKLW 332
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 103 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 294 VVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLL 352
V +K+SPNG +LAS S + +KIW D K + + H + +AW + LL
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISG-HKLGISDVAWSS-DSNLL 104
Query: 353 ATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412
+ D+T+++W+ +GK +K S L+ S G D S+++W+
Sbjct: 105 VSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVK 161
Query: 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
++ L H + + + + D + + ++S D IW+
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 141
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 142 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIW 200
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 201 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 126 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 184
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 185 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 240
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 241 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 266
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W +V+ G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 267 KW------IVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 318
Query: 445 DETISIW 451
D+TI +W
Sbjct: 319 DKTIKLW 325
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 96 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 283 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISG-HKLGI 85
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399
+AW + LL + D+T+++W+ +GK +K S L+ S
Sbjct: 86 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS- 141
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D S+++W+ ++ L H + + + + D + + ++S D IW+
Sbjct: 142 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 134
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 135 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIW 193
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 194 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 105/247 (42%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 115 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 229
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 230 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 255
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 256 KW--------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 307
Query: 445 DETISIW 451
D+TI +W
Sbjct: 308 DKTIKLW 314
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 85 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 283 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 74
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399
+AW + LL + D+T+++W+ +GK +K S L+ S
Sbjct: 75 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS- 130
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D S+++W+ ++ L H + + + + D + + ++S D IW+
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 123
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIW 182
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 115 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 229
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 230 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 255
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W +V+ G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 256 KW------IVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 307
Query: 445 DETISIW 451
D+TI +W
Sbjct: 308 DKTIKLW 314
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 85 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 283 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 74
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399
+AW + LL + D+T+++W+ +GK +K S L+ S
Sbjct: 75 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS- 130
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D S+++W+ ++ L H + + + + D + + ++S D IW+
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 123
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIW 182
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 115 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 229
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 230 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 255
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W +V+ G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 256 KW------IVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 307
Query: 445 DETISIW 451
D+TI +W
Sbjct: 308 DKTIKLW 314
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 85 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 283 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 74
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399
+AW + LL + D+T+++W+ +GK +K S L+ S
Sbjct: 75 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS- 130
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D S+++W+ ++ L H + + + + D + + ++S D IW+
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 123
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIW 182
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 109 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 223
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 224 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 249
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W +V+ G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 250 KW------IVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 301
Query: 445 DETISIW 451
D+TI +W
Sbjct: 302 DKTIKLW 308
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 79 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 283 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 68
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399
+AW + LL + D+T+++W+ +GK +K S L+ S
Sbjct: 69 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS- 124
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D S+++W+ ++ L H + + + + D + + ++S D IW+
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 117
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 118 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIW 176
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 109 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 223
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 224 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 249
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W +V+ G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 250 KW------IVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 301
Query: 445 DETISIW 451
D+TI +W
Sbjct: 302 DKTIKLW 308
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 79 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 283 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 68
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399
+AW + LL + D+T+++W+ +GK +K S L+ S
Sbjct: 69 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS- 124
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D S+++W+ ++ L H + + + + D + + ++S D IW+
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 117
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 118 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIW 176
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 110 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 168
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 169 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 224
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 225 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 250
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W +V+ G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 251 KW------IVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 302
Query: 445 DETISIW 451
D+TI +W
Sbjct: 303 DKTIKLW 309
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 80 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 283 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 69
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399
+AW + LL + D+T+++W+ +GK +K S L+ S
Sbjct: 70 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS- 125
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D S+++W+ ++ L H + + + + D + + ++S D IW+
Sbjct: 126 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 118
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 119 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIW 177
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 178 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 108 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 166
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 167 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 222
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 223 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 248
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W +V+ G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 249 KW------IVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 300
Query: 445 DETISIW 451
D+TI +W
Sbjct: 301 DKTIKLW 307
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 78 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 283 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 67
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399
+AW + LL + D+T+++W+ +GK +K S L+ S
Sbjct: 68 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS- 123
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D S+++W+ ++ L H + + + + D + + ++S D IW+
Sbjct: 124 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 116
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 117 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIW 175
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 114 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 172
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 173 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 228
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 229 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 254
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W +V+ G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 255 KW------IVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 306
Query: 445 DETISIW 451
D+TI +W
Sbjct: 307 DKTIKLW 313
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 84 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 10/189 (5%)
Query: 267 GTIGGNILHYDVRTHSDYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL 323
G +G +Y T G V +K+SPNG +LAS S + +KIW
Sbjct: 1 GAMGSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAY 58
Query: 324 DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQV 383
D K + + H + +AW + LL + D+T+++W+ +GK +K S
Sbjct: 59 DGKFEKTISG-HKLGISDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNY 114
Query: 384 TSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAAS 443
L+ S G D S+++W+ ++ L H + + + + D + + ++S
Sbjct: 115 VFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 173
Query: 444 ADETISIWN 452
D IW+
Sbjct: 174 YDGLCRIWD 182
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 122
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 123 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIW 181
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 105/247 (42%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 105 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 163
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 164 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 219
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 220 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 245
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 246 KW--------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 297
Query: 445 DETISIW 451
D+TI +W
Sbjct: 298 DKTIKLW 304
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 75 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 283 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 64
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399
+AW + LL + D+T+++W+ +GK +K S L+ S
Sbjct: 65 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS- 120
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D S+++W+ ++ L H + + + + D + + ++S D IW+
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 113
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 114 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIW 172
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 173 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 105/247 (42%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 112 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 226
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 227 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 252
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 253 KW--------IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 445 DETISIW 451
D+TI +W
Sbjct: 305 DKTIKLW 311
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L A+ D+ +++W + +GK EK ++ + WS
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 82 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 283 DYPTAITREG--DVVCGLKWSPNGRYL-ASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAV 339
+Y T G V +K+SPNG +L AS ++ +KIW D K + + H +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWG--AYDGKFEKTISG-HKLGI 71
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399
+AW + LL + D+T+++W+ +GK +K S L+ S
Sbjct: 72 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS- 127
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D S+++W+ ++ L H + + + + D + + ++S D IW+
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 120
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIW 179
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454
P L L H + + S SP+ +AA+SAD+ I IW +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY 56
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 107/247 (43%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + ++ L H V A+ +N G+L+
Sbjct: 112 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 226
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 227 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 252
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W +V+ G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 253 KW------IVS--GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 445 DETISIW 451
D+TI +W
Sbjct: 305 DKTIKLW 311
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 82 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 283 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 71
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399
+AW + LL + D+T+++W+ +GK +K S L+ S
Sbjct: 72 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS- 127
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D S+++W+ ++ L H + + + + D + + ++S D IW+
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 120
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ G + S S + + L+ S D ++W
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIW 179
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454
P L+ L H + + S SP+ +A++SAD+ I IW +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 106/247 (42%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + ++ L H V A+ +N G+L+
Sbjct: 112 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +N +K+WD+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK---- 226
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 227 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 252
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W +V+ G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 253 KW------IVS--GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 445 DETISIW 451
D+TI +W
Sbjct: 305 DKTIKLW 311
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 82 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 283 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 71
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399
+AW + LL + D+T+++W+ +GK +K S L+ S
Sbjct: 72 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS- 127
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D S+++W+ ++ L H + + + + D + + ++S D IW+
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454
P L+ L H + + S SP+ +A++SAD+ I IW +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 112 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 226
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 227 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 252
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W +V+ G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 253 KW------IVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 445 DETISIW 451
D+TI ++
Sbjct: 305 DKTIKLY 311
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 82 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 283 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISG-HKLGI 71
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399
+AW + LL + D+T+++W+ +GK +K S L+ S
Sbjct: 72 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS- 127
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D S+++W+ ++ L H + + + + D + + ++S D IW+
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 120
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIW 179
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 267
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 112 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---- 226
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
G C +T + + EK + + VT
Sbjct: 227 ------------------------------GKCLKTY----TGHKNEKYCIFANFSVTGG 252
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-- 444
W +V+ G +D + +W ++++L+ H + ++S P + +A+A+
Sbjct: 253 KW------IVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 445 DETISIW 451
D+TI ++
Sbjct: 305 DKTIKLF 311
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYR 393
H AV ++ + P L ++ D+ +++W + +GK EK ++ + WS
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
LV++ D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 82 LLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 283 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISG-HKLGI 71
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399
+AW + LL + D+T+++W+ +GK +K S L+ S
Sbjct: 72 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS- 127
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D S+++W+ ++ L H + + + + D + + ++S D IW+
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 295 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA----IAWCPWEP 349
+ + WS + L S S++ T+KIWD + +C L +K + C + P
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVS---------SGKC-LKTLKGHSNYVFCCNFNP 120
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
G D++VR+W+ GK + S S + + L+ S D ++W
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIW 179
Query: 410 EYPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
+ ++ L +S V SP+ + AA+ D T+ +W+
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 293 DVVCGLKWSPNGRYLAS-GSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 351
D V +S +G+ +AS G++ T++++ + + + + H V A+ +
Sbjct: 622 DAVYHACFSEDGQRIASCGADKTLQVF---KAETGEKLLEIKAHEDEVLCCAFST-DDRF 677
Query: 352 LATGGGICDQTVRLWNSMNGKEKCHVKTD--SQVTSILWSEQYRELVTSHGKQDCSLKMW 409
+AT D+ V++WNSM G E H + QV ++ L+ + G DC LK+W
Sbjct: 678 IATCS--VDKKVKIWNSMTG-ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Query: 410 EYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 460
+ + + H + SPD +A+ SAD T+ +W+ ++++
Sbjct: 735 DLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERK 785
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 360 DQTVRLWNSMNG-KEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE 418
D TV++WN + G KEK V V S S + ++ D + K+W + L +
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSA--DKTAKIWSFDLLLPLH 1127
Query: 419 ELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
EL+ H + + S D T +A + I IWN
Sbjct: 1128 ELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWN 1161
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 301 SPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 360
SP+ +Y+A G N + +L R + H V I + E TL+++ D
Sbjct: 976 SPHLQYIAFGDENGA--IEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSD---D 1030
Query: 361 QTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQ---DCSLKMWEYPRLHLI 417
+++WN +KC Q T + +R L S D ++K+W +
Sbjct: 1031 AEIQVWNWQ--LDKCIFLRGHQETV----KDFRLLKNSRLLSWSFDGTVKVWNIITGNKE 1084
Query: 418 EELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
++ HQ +LS +S D T ++ SAD+T IW+
Sbjct: 1085 KDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWS 1119
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 233 IDLWHEQEERLIQKLRTHMHQV--IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITR 290
I LW Q I+ + H H V +++ NG+ + + I ++V+T T T
Sbjct: 174 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-FTG 232
Query: 291 EGDVVCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP--- 346
+ V ++ + +G +AS SN+ TV++W + K + + H V+ I+W P
Sbjct: 233 HREWVRMVRPNQDGTLIASCSNDQTVRVW---VVATKECKAELREHRHVVECISWAPESS 289
Query: 347 WEPTLLATGG--------------GICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQ 391
+ ATG G D+T+++W+ G V D+ V +L+
Sbjct: 290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG 349
Query: 392 YRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 451
+ +++ D +L++W+Y ++ L H+ + S V S D+T+ +W
Sbjct: 350 GKFILSC--ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Query: 452 NC 453
C
Sbjct: 408 EC 409
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 79/160 (49%), Gaps = 11/160 (6%)
Query: 307 LASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 366
+++ + T+K+WD+ D +R + H +V+ I++ LLA+ D T++LW
Sbjct: 124 VSASEDATIKVWDYETGDFERTL---KGHTDSVQDISF-DHSGKLLASCSA--DMTIKLW 177
Query: 367 NSMNGKE--KCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ 424
+ G E + D V+S+ +V++ +D ++KMWE + ++ H+
Sbjct: 178 D-FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA--SRDKTIKMWEVQTGYCVKTFTGHR 234
Query: 425 ERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQ 464
E + + D T +A+ S D+T+ +W ++ K + R+
Sbjct: 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 16/182 (8%)
Query: 246 KLRTHMHQVIAMCWNGNL---LSCGTIGGNILHYDVRTHS------DYPTAITREGDVVC 296
+LR H + + WN NL L + I +D+ D T T VV
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 297 GLKWS--PNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 354
+ W + + + + IWD R + +P + H + V +++ P+ +LAT
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 355 GGGICDQTVRLWNSMNGKEKCHV--KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412
G D+TV LW+ N K K H ++ + WS ++ S G D L +W+
Sbjct: 292 GS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DRRLNVWDLS 348
Query: 413 RL 414
++
Sbjct: 349 KI 350
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 176 HDTL--AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYI 233
H++L +VA D + W+T++N T A ++C+++ P + + T + + +
Sbjct: 239 HESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTV 298
Query: 234 DLWHEQEERL-IQKLRTHMHQVIAMCWNGN----LLSCGT 268
LW + +L + +H ++ + W+ + L S GT
Sbjct: 299 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 4 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 46
H + V +++ P+ +LATG D+TV LW+ N K K H
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLH 311
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 116/283 (40%), Gaps = 29/283 (10%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLA---VTNTCTEYIDLWHEQE 240
D V W++ T + V P ++ A+ P +A + N C+ Y + + E
Sbjct: 85 DGKVIVWDSFTTNKEHAVTMPC---TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141
Query: 241 ERLIQKLRTHMH-QVIAMCWNGN-----LLSCGTIGGNILHYDVRTHSDYPTAITREGDV 294
+K MH ++ C N L + G G +DV + + DV
Sbjct: 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD--GTCALWDVESGQLLQSFHGHGADV 199
Query: 295 VCGLKWSPN---GRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 351
+C L +P+ +++ G + +WD R + ++ +++V+ + P+
Sbjct: 200 LC-LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR------YYPSG 252
Query: 352 LATGGGICDQTVRLWNSMNGKEKCHVKTDSQV---TSILWSEQYRELVTSHGKQDCSLKM 408
A G D T RL++ +E +S + +S+ +S R L G D ++ +
Sbjct: 253 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA--GYNDYTINV 310
Query: 409 WEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 451
W+ + + L H+ R+ + +SPD T + S D T+ +W
Sbjct: 311 WDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 16/182 (8%)
Query: 246 KLRTHMHQVIAMCWNGNL---LSCGTIGGNILHYDVRTHS------DYPTAITREGDVVC 296
+LR H + + WN NL L + I +D+ D T VV
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Query: 297 GLKWS--PNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 354
+ W + + + + IWD R + +P H + V +++ P+ +LAT
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 355 GGGICDQTVRLWNSMNGKEKCHV--KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412
G D+TV LW+ N K K H ++ + WS ++ S G D L +W+
Sbjct: 296 GS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DRRLHVWDLS 352
Query: 413 RL 414
++
Sbjct: 353 KI 354
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 96/270 (35%), Gaps = 71/270 (26%)
Query: 257 MCWNGNLLSCGTIGGNILHYDVRTHSDYPT------------AITREGDVVCGLKWSPN- 303
M N +++ T ++L +D H P +EG GL W+PN
Sbjct: 137 MPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG---YGLSWNPNL 193
Query: 304 -GRYLASGSNNTVKIWDF-------RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATG 355
G L++ ++T+ +WD R +DAK H + V+ +AW +L G
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG---HTAVVEDVAWHLLHESLF--G 248
Query: 356 GGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415
DQ + +W++ N + + V +H + L Y
Sbjct: 249 SVADDQKLMIWDTRNNN----------------TSKPSHTVDAHTAEVNCLSFNPYSEF- 291
Query: 416 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAI 475
+A SAD+T+++W+ R+ K K S F +
Sbjct: 292 ----------------------ILATGSADKTVALWDL--RNLKLKLHSFESHKDEIFQV 327
Query: 476 LKQPVSLTALLRSRAVEKQQHAIAYTVFGE 505
P + T +L S +++ H + GE
Sbjct: 328 QWSPHNET-ILASSGTDRRLHVWDLSKIGE 356
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 152 KPERILEAPSIINDFYTSGLDWGYH---DTL--AVALDTSVYTWNTKTNKTQLLVEYPTY 206
K R+++A +I D +H ++L +VA D + W+T+ N T
Sbjct: 216 KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275
Query: 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-IQKLRTHMHQVIAMCWNGN--- 262
A ++C+++ P + + T + + + LW + +L + +H ++ + W+ +
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 335
Query: 263 -LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDF 320
L S GT D R H + I E P ++ G +T KI DF
Sbjct: 336 ILASSGT--------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--HTAKISDF 384
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 4 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 46
H + V +++ P+ +LATG D+TV LW+ N K K H
Sbjct: 275 AHTAEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLH 315
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 16/182 (8%)
Query: 246 KLRTHMHQVIAMCWNGNL---LSCGTIGGNILHYDVRTHS------DYPTAITREGDVVC 296
+LR H + + WN NL L + I +D+ D T VV
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Query: 297 GLKWS--PNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 354
+ W + + + + IWD R + +P H + V +++ P+ +LAT
Sbjct: 238 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 355 GGGICDQTVRLWNSMNGKEKCHV--KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412
G D+TV LW+ N K K H ++ + WS ++ S G D L +W+
Sbjct: 298 GS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DRRLHVWDLS 354
Query: 413 RL 414
++
Sbjct: 355 KI 356
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 96/270 (35%), Gaps = 71/270 (26%)
Query: 257 MCWNGNLLSCGTIGGNILHYDVRTHSDYPT------------AITREGDVVCGLKWSPN- 303
M N +++ T ++L +D H P +EG GL W+PN
Sbjct: 139 MPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG---YGLSWNPNL 195
Query: 304 -GRYLASGSNNTVKIWDF-------RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATG 355
G L++ ++T+ +WD R +DAK H + V+ +AW +L G
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG---HTAVVEDVAWHLLHESLF--G 250
Query: 356 GGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415
DQ + +W++ N + + V +H + L Y
Sbjct: 251 SVADDQKLMIWDTRNNN----------------TSKPSHTVDAHTAEVNCLSFNPYSEF- 293
Query: 416 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAI 475
+A SAD+T+++W+ R+ K K S F +
Sbjct: 294 ----------------------ILATGSADKTVALWDL--RNLKLKLHSFESHKDEIFQV 329
Query: 476 LKQPVSLTALLRSRAVEKQQHAIAYTVFGE 505
P + T +L S +++ H + GE
Sbjct: 330 QWSPHNET-ILASSGTDRRLHVWDLSKIGE 358
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 152 KPERILEAPSIINDFYTSGLDWGYH---DTL--AVALDTSVYTWNTKTNKTQLLVEYPTY 206
K R+++A +I D +H ++L +VA D + W+T+ N T
Sbjct: 218 KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 277
Query: 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-IQKLRTHMHQVIAMCWNGN--- 262
A ++C+++ P + + T + + + LW + +L + +H ++ + W+ +
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 337
Query: 263 -LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDF 320
L S GT D R H + I E P ++ G +T KI DF
Sbjct: 338 ILASSGT--------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--HTAKISDF 386
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 4 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 46
H + V +++ P+ +LATG D+TV LW+ N K K H
Sbjct: 277 AHTAEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLH 317
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 16/182 (8%)
Query: 246 KLRTHMHQVIAMCWNGNL---LSCGTIGGNILHYDVRTHS------DYPTAITREGDVVC 296
+LR H + + WN NL L + I +D+ D T VV
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 297 GLKWS--PNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 354
+ W + + + + IWD R + +P H + V +++ P+ +LAT
Sbjct: 240 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 355 GGGICDQTVRLWNSMNGKEKCHV--KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412
G D+TV LW+ N K K H ++ + WS ++ S G D L +W+
Sbjct: 300 GS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DRRLHVWDLS 356
Query: 413 RL 414
++
Sbjct: 357 KI 358
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 152 KPERILEAPSIINDFYTSGLDWGYH---DTL--AVALDTSVYTWNTKTNKTQLLVEYPTY 206
K R+++A +I D +H ++L +VA D + W+T+ N T
Sbjct: 220 KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 279
Query: 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-IQKLRTHMHQVIAMCWNGN--- 262
A ++C+++ P + + T + + + LW + +L + +H ++ + W+ +
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 339
Query: 263 -LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDF 320
L S GT D R H + I E P ++ G +T KI DF
Sbjct: 340 ILASSGT--------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--HTAKISDF 388
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 96/270 (35%), Gaps = 71/270 (26%)
Query: 257 MCWNGNLLSCGTIGGNILHYDVRTHSDYPT------------AITREGDVVCGLKWSPN- 303
M N +++ T ++L +D H P +EG GL W+PN
Sbjct: 141 MPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG---YGLSWNPNL 197
Query: 304 -GRYLASGSNNTVKIWDF-------RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATG 355
G L++ ++T+ +WD R +DAK H + V+ +AW +L G
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG---HTAVVEDVAWHLLHESLF--G 252
Query: 356 GGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415
DQ + +W++ N + + V +H + L Y
Sbjct: 253 SVADDQKLMIWDTRNNN----------------TSKPSHTVDAHTAEVNCLSFNPYSEF- 295
Query: 416 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAI 475
+A SAD+T+++W+ R+ K K S F +
Sbjct: 296 ----------------------ILATGSADKTVALWDL--RNLKLKLHSFESHKDEIFQV 331
Query: 476 LKQPVSLTALLRSRAVEKQQHAIAYTVFGE 505
P + T +L S +++ H + GE
Sbjct: 332 QWSPHNET-ILASSGTDRRLHVWDLSKIGE 360
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 4 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 46
H + V +++ P+ +LATG D+TV LW+ N K K H
Sbjct: 279 AHTAEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLH 319
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 16/182 (8%)
Query: 246 KLRTHMHQVIAMCWNGNL---LSCGTIGGNILHYDVRTHS------DYPTAITREGDVVC 296
+LR H + + WN NL L + + +D+ D T VV
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 297 GLKWS--PNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 354
+ W + + + + IWD R +P H + V +++ P+ +LAT
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 355 GGGICDQTVRLWNSMNGKEKCHV--KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412
G D+TV LW+ N K K H ++ + WS ++ S G D L +W+
Sbjct: 294 GS--ADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT-DRRLNVWDLS 350
Query: 413 RL 414
++
Sbjct: 351 KI 352
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 176 HDTL--AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYI 233
H++L +VA D + W+T++N T A ++C+++ P + + T + + +
Sbjct: 241 HESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTV 300
Query: 234 DLWHEQEERL-IQKLRTHMHQVIAMCWNGN----LLSCGT 268
LW + +L + +H ++ + W+ + L S GT
Sbjct: 301 ALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 3 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 46
H + V +++ P+ +LATG D+TV LW+ N K K H
Sbjct: 272 DAHTAEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLH 313
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 16/182 (8%)
Query: 246 KLRTHMHQVIAMCWNGNL---LSCGTIGGNILHYDVRTHS------DYPTAITREGDVVC 296
+LR H + + WN NL L + + +D+ D T VV
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 297 GLKWS--PNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 354
+ W + + + + IWD R +P H + V +++ P+ +LAT
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 355 GGGICDQTVRLWNSMNGKEKCHV--KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412
G D+TV LW+ N K K H ++ + WS ++ S G D L +W+
Sbjct: 294 GS--ADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT-DRRLNVWDLS 350
Query: 413 RL 414
++
Sbjct: 351 KI 352
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 176 HDTL--AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYI 233
H++L +VA D + W+T++N T A ++C+++ P + + T + + +
Sbjct: 241 HESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTV 300
Query: 234 DLWHEQEERL-IQKLRTHMHQVIAMCWNGN----LLSCGT 268
LW + +L + +H ++ + W+ + L S GT
Sbjct: 301 ALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 3 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 46
H + V +++ P+ +LATG D+TV LW+ N K K H
Sbjct: 272 DAHTAEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLH 313
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 35/173 (20%)
Query: 307 LASGSNN------TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 360
LA+GS + +VK DF +D ++ H A++++AW P +LLA G D
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDV----LDETAHKKAIRSVAWRP-HTSLLAAGS--FD 79
Query: 361 QTVRLWNSMNGKEKCHVKT------------DSQVTSILWSEQYRELVTSHGKQDCSLKM 408
TV +W KE+ +T +++V + WS L T +D S+ +
Sbjct: 80 STVSIW----AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC--SRDKSVWI 133
Query: 409 WEY----PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457
WE I L+ H + + + P + +A++S D+T+ IW + D
Sbjct: 134 WETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD 186
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 15/147 (10%)
Query: 295 VCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNN-QCHLSAVKAIAWCPWEPTLL 352
V G+ WS +G YLA+ S + +V IW+ + + ++ Q H VK + W P E L
Sbjct: 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLA 169
Query: 353 ATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRE----LVTSHGKQDCSLKM 408
++ D TVR+W + +C + ++ WS + + G D ++++
Sbjct: 170 SSS---YDDTVRIWKDYDDDWECVAVLNGHEGTV-WSSDFDKTEGVFRLCSGSDDSTVRV 225
Query: 409 WEYPRLHLIEELKIHQERILSAVLSPD 435
W+Y + ++ QE + A+L PD
Sbjct: 226 WKY----MGDDEDDQQEWVCEAIL-PD 247
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 56/254 (22%)
Query: 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRT-------------HSDYPTA------ 287
LR+ A +GN ++CG + Y+++T H+ Y +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 288 ---ITREGDVVCG----------------------LKWSPNGRYLASGS-NNTVKIWDFR 321
+T GD C L +P+ R SG+ + + K+WD R
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381
+ ++ H S + AI + P ATG D T RL++ +E D+
Sbjct: 215 EGMCRQTFTG---HESDINAICFFP-NGNAFATGSD--DATCRLFDLRADQELMTYSHDN 268
Query: 382 ---QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 438
+TS+ +S+ R L+ + +C++ W+ + L H R+ ++ D
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNV--WDALKADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 439 VAAASADETISIWN 452
VA S D + IWN
Sbjct: 327 VATGSWDSFLKIWN 340
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDV 278
T L V+ C LW +E Q H + A+C+ NGN + G+ +D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 279 RTHSDYPTAITREGDVVCGL---KWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQV 330
R +D +++CG+ +S +GR L +G ++ +WD L A R V
Sbjct: 256 R--ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD--ALKADRAGV 307
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 17/162 (10%)
Query: 298 LKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKA--IAWCPWEPTLLAT 354
+ W + R L S S + + IWD N+ H +++ + C + P+
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWD--------SYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 355 GGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQY---RELVTSHGKQDCSLKMWE 410
G D ++N + V + + T L ++ ++VTS G C+L W+
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WD 170
Query: 411 YPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
H ++S L+PD + + D + +W+
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVA 440
+++ ++ W R LV++ QD L +W+ + + + + +++ +P VA
Sbjct: 56 AKIYAMHWGTDSRLLVSA--SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 441 AASADETISIWNCFPRDKK-RKARQV 465
D SI+N R+ R +R++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSREL 139
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 56/254 (22%)
Query: 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRT-------------HSDYPTA------ 287
LR+ A +GN ++CG + Y+++T H+ Y +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 288 ---ITREGDVVCG----------------------LKWSPNGRYLASGS-NNTVKIWDFR 321
+T GD C L +P+ R SG+ + + K+WD R
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381
+ ++ H S + AI + P ATG D T RL++ +E D+
Sbjct: 215 EGMCRQTFTG---HESDINAICFFP-NGNAFATGSD--DATCRLFDLRADQELMTYSHDN 268
Query: 382 ---QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 438
+TS+ +S+ R L+ + +C++ W+ + L H R+ ++ D
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNV--WDALKADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 439 VAAASADETISIWN 452
VA S D + IWN
Sbjct: 327 VATGSWDSFLKIWN 340
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDV 278
T L V+ C LW +E Q H + A+C+ NGN + G+ +D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 279 RTHSDYPTAITREGDVVCGL---KWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQV 330
R +D +++CG+ +S +GR L +G ++ +WD L A R V
Sbjct: 256 R--ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD--ALKADRAGV 307
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 81/229 (35%), Gaps = 56/229 (24%)
Query: 230 TEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTA 287
T ID + R + LR H+ ++ AM W + LL + G ++ +D T ++ A
Sbjct: 34 TNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-TNKVHA 92
Query: 288 ITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW 347
I V ++P+G Y+A G ++N C + +K
Sbjct: 93 IPLRSSWVMTCAYAPSGNYVACGG------------------LDNICSIYNLKTR----- 129
Query: 348 EPTLLATGGGICDQTVRLWNSMNGKEK----CHVKTDSQVTSILWSEQYRELVTSHGKQD 403
+ VR+ + G C D+Q+ VTS G
Sbjct: 130 ------------EGNVRVSRELAGHTGYLSCCRFLDDNQI------------VTSSGDTT 165
Query: 404 CSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
C+L W+ H ++S L+PD + + D + +W+
Sbjct: 166 CAL--WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 56/254 (22%)
Query: 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRT-------------HSDYPTA------ 287
LR+ A +GN ++CG + Y+++T H+ Y +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 288 ---ITREGDVVCG----------------------LKWSPNGRYLASGS-NNTVKIWDFR 321
+T GD C L +P+ R SG+ + + K+WD R
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381
+ ++ H S + AI + P ATG D T RL++ +E D+
Sbjct: 215 EGMCRQTFTG---HESDINAICFFP-NGNAFATGSD--DATCRLFDLRADQELMTYSHDN 268
Query: 382 ---QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 438
+TS+ +S+ R L+ + +C++ W+ + L H R+ ++ D
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNV--WDALKADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 439 VAAASADETISIWN 452
VA S D + IWN
Sbjct: 327 VATGSWDSFLKIWN 340
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDV 278
T L V+ C LW +E Q H + A+C+ NGN + G+ +D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 279 RTHSDYPTAITREGDVVCGL---KWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQV 330
R +D +++CG+ +S +GR L +G ++ +WD L A R V
Sbjct: 256 R--ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD--ALKADRAGV 307
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 17/162 (10%)
Query: 298 LKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKA--IAWCPWEPTLLAT 354
+ W + R L S S + + IWD N+ H +++ + C + P+
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWD--------SYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 355 GGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQY---RELVTSHGKQDCSLKMWE 410
G D ++N + V + + T L ++ ++VTS G C+L W+
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WD 170
Query: 411 YPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
H ++S L+PD + + D + +W+
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVA 440
+++ ++ W R LV++ QD L +W+ + + + + +++ +P VA
Sbjct: 56 AKIYAMHWGTDSRLLVSA--SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 441 AASADETISIWNCFPRDKK-RKARQV 465
D SI+N R+ R +R++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSREL 139
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 56/254 (22%)
Query: 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRT-------------HSDYPTA------ 287
LR+ A +GN ++CG + Y+++T H+ Y +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 288 ---ITREGDVVCG----------------------LKWSPNGRYLASGS-NNTVKIWDFR 321
+T GD C L +P+ R SG+ + + K+WD R
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381
+ ++ H S + AI + P ATG D T RL++ +E D+
Sbjct: 215 EGMCRQTFTG---HESDINAICFFP-NGNAFATGSD--DATCRLFDLRADQELMTYSHDN 268
Query: 382 ---QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 438
+TS+ +S+ R L+ + +C++ W+ + L H R+ ++ D
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNV--WDALKADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 439 VAAASADETISIWN 452
VA S D + IWN
Sbjct: 327 VATGSWDSFLKIWN 340
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDV 278
T L V+ C LW +E Q H + A+C+ NGN + G+ +D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 279 RTHSDYPTAITREGDVVCGL---KWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQV 330
R +D +++CG+ +S +GR L +G ++ +WD L A R V
Sbjct: 256 R--ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD--ALKADRAGV 307
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 81/229 (35%), Gaps = 56/229 (24%)
Query: 230 TEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTA 287
T ID + R + LR H+ ++ AM W + LL + G ++ +D T ++ A
Sbjct: 34 TNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-TNKVHA 92
Query: 288 ITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW 347
I V ++P+G Y+A G ++N C + +K
Sbjct: 93 IPLRSSWVMTCAYAPSGNYVACGG------------------LDNICSIYNLKTR----- 129
Query: 348 EPTLLATGGGICDQTVRLWNSMNGKEK----CHVKTDSQVTSILWSEQYRELVTSHGKQD 403
+ VR+ + G C D+Q+ VTS G
Sbjct: 130 ------------EGNVRVSRELAGHTGYLSCCRFLDDNQI------------VTSSGDTT 165
Query: 404 CSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
C+L W+ H ++S L+PD + + D + +W+
Sbjct: 166 CAL--WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 56/254 (22%)
Query: 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRT-------------HSDYPTA------ 287
LR+ A +GN ++CG + Y+++T H+ Y +
Sbjct: 106 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 165
Query: 288 ---ITREGDVVCG----------------------LKWSPNGRYLASGS-NNTVKIWDFR 321
+T GD C L +P+ R SG+ + + K+WD R
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381
+ ++ H S + AI + P ATG D T RL++ +E D+
Sbjct: 226 EGMCRQTFTG---HESDINAICFFP-NGNAFATGSD--DATCRLFDLRADQELMTYSHDN 279
Query: 382 ---QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 438
+TS+ +S+ R L+ + +C++ W+ + L H R+ ++ D
Sbjct: 280 IICGITSVSFSKSGRLLLAGYDDFNCNV--WDALKADRAGVLAGHDNRVSCLGVTDDGMA 337
Query: 439 VAAASADETISIWN 452
VA S D + IWN
Sbjct: 338 VATGSWDSFLKIWN 351
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDV 278
T L V+ C LW +E Q H + A+C+ NGN + G+ +D+
Sbjct: 207 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 266
Query: 279 RTHSDYPTAITREGDVVCGL---KWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQV 330
R +D +++CG+ +S +GR L +G ++ +WD L A R V
Sbjct: 267 R--ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD--ALKADRAGV 318
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 17/162 (10%)
Query: 298 LKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKA--IAWCPWEPTLLAT 354
+ W + R L S S + + IWD N+ H +++ + C + P+
Sbjct: 72 MHWGTDSRLLVSASQDGKLIIWD--------SYTTNKVHAIPLRSSWVMTCAYAPSGNYV 123
Query: 355 GGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQY---RELVTSHGKQDCSLKMWE 410
G D ++N + V + + T L ++ ++VTS G C+L W+
Sbjct: 124 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WD 181
Query: 411 YPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
H ++S L+PD + + D + +W+
Sbjct: 182 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 223
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVA 440
+++ ++ W R LV++ QD L +W+ + + + + +++ +P VA
Sbjct: 67 AKIYAMHWGTDSRLLVSA--SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 124
Query: 441 AASADETISIWNCFPRDKK-RKARQV 465
D SI+N R+ R +R++
Sbjct: 125 CGGLDNICSIYNLKTREGNVRVSREL 150
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 301 SPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQC------HLSAVKAIAWCPWEPTLLA 353
S NG + S S ++++++W+ + N QC H V ++A+ P +++
Sbjct: 76 SNNGNFAVSASWDHSLRLWNLQ---------NGQCQYKFLGHTKDVLSVAFSPDNRQIVS 126
Query: 354 TGGGICDQTVRLWNSMNGKEKC-HVKTDSQ----VTSILWSEQYRELVTSHGKQDCSLKM 408
G D +R+WN K +C H + V+ + +S V G D +K+
Sbjct: 127 GGR---DNALRVWNV---KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 409 WEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
W+ L+ +LK H + S +SPD + A++ D +W+
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 81/170 (47%), Gaps = 8/170 (4%)
Query: 293 DVVCGLKWSPNGRYLAS-GSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 351
D V +S +G+ +AS G++ T++++ + + ++ + H V A+ + +
Sbjct: 616 DAVYHACFSQDGQRIASCGADKTLQVF---KAETGEKLLDIKAHEDEVLCCAFSS-DDSY 671
Query: 352 LATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWE 410
+AT D+ V++W+S GK + + QV ++ + L+ + G D LK+W+
Sbjct: 672 IATCSA--DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 411 YPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 460
+ + H + SPD +A+ SAD T+ +W+ ++++
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 779
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 28/165 (16%)
Query: 298 LKWSPNGRYLASGSNNTV-KIW-----DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 351
++++ +G+ L S S ++V ++W D+ L A + V + L + ++W
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS------ 1062
Query: 352 LATGGGICDQTVRLWNSMNGKEK----CHVKTDSQVTSILWSEQYRELVTSHGKQDCSLK 407
D TV++WN + G+ + CH T V S S + ++ D + K
Sbjct: 1063 -------FDGTVKVWNVITGRIERDFTCHQGT---VLSCAISSDATKFSSTSA--DKTAK 1110
Query: 408 MWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
+W + L + ELK H + + S D +A + I IWN
Sbjct: 1111 IWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 10/153 (6%)
Query: 301 SPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359
SP+ Y+A G + +KI +L R + H AV+ I + TL+++
Sbjct: 970 SPHLEYVAFGDEDGAIKII---ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE--- 1023
Query: 360 DQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEE 419
D +++WN G V + R L S D ++K+W + +
Sbjct: 1024 DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF---DGTVKVWNVITGRIERD 1080
Query: 420 LKIHQERILSAVLSPDQTCVAAASADETISIWN 452
HQ +LS +S D T ++ SAD+T IW+
Sbjct: 1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 299 KWSPNGRYLASGS-NNTVKIWDFRQ------LDAKRPQVNNQCHLSAVKAIA-WCPWEPT 350
++SP+ LAS S + T+++WD R ++ KR ++++ V+ I C W
Sbjct: 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS-- 807
Query: 351 LLATGGGI---CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSE--QYRELVTSHGKQDCS 405
A G I V L++ + T T I + + Y L Q C
Sbjct: 808 --ADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST-IQYCDFSPYDHLAVIALSQYC- 863
Query: 406 LKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 451
+++W + + + H + + SPD + AS D+TI +W
Sbjct: 864 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 81/170 (47%), Gaps = 8/170 (4%)
Query: 293 DVVCGLKWSPNGRYLAS-GSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 351
D V +S +G+ +AS G++ T++++ + + ++ + H V A+ + +
Sbjct: 623 DAVYHACFSQDGQRIASCGADKTLQVF---KAETGEKLLDIKAHEDEVLCCAFSS-DDSY 678
Query: 352 LATGGGICDQTVRLWNSMNGK-EKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWE 410
+AT D+ V++W+S GK + + QV ++ + L+ + G D LK+W+
Sbjct: 679 IATCSA--DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 411 YPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 460
+ + H + SPD +A+ SAD T+ +W+ ++++
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 786
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 28/165 (16%)
Query: 298 LKWSPNGRYLASGSNNTV-KIW-----DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 351
++++ +G+ L S S ++V ++W D+ L A + V + L + ++W
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS------ 1069
Query: 352 LATGGGICDQTVRLWNSMNGKEK----CHVKTDSQVTSILWSEQYRELVTSHGKQDCSLK 407
D TV++WN + G+ + CH T V S S + ++ D + K
Sbjct: 1070 -------FDGTVKVWNVITGRIERDFTCHQGT---VLSCAISSDATKFSSTSA--DKTAK 1117
Query: 408 MWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
+W + L + ELK H + + S D +A + I IWN
Sbjct: 1118 IWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 10/153 (6%)
Query: 301 SPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359
SP+ Y+A G + +KI +L R + H AV+ I + TL+++
Sbjct: 977 SPHLEYVAFGDEDGAIKII---ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE--- 1030
Query: 360 DQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEE 419
D +++WN G V + R L S D ++K+W + +
Sbjct: 1031 DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF---DGTVKVWNVITGRIERD 1087
Query: 420 LKIHQERILSAVLSPDQTCVAAASADETISIWN 452
HQ +LS +S D T ++ SAD+T IW+
Sbjct: 1088 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1120
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 299 KWSPNGRYLASGS-NNTVKIWDFRQ------LDAKRPQVNNQCHLSAVKAIA-WCPWEPT 350
++SP+ LAS S + T+++WD R ++ KR ++++ V+ I C W
Sbjct: 757 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS-- 814
Query: 351 LLATGGGI---CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSE--QYRELVTSHGKQDCS 405
A G I V L++ + T T I + + Y L Q C
Sbjct: 815 --ADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST-IQYCDFSPYDHLAVIALSQYC- 870
Query: 406 LKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 451
+++W + + + H + + SPD + AS D+TI +W
Sbjct: 871 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 118/259 (45%), Gaps = 27/259 (10%)
Query: 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWH----EQEERLIQK-LRTHMHQV--IAMCWN 260
N +++ +A P+ D+ ++ + + I +W E + Q+ LR H H V + + +
Sbjct: 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD 97
Query: 261 GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319
G G+ G + +D+ T + + DV+ + +S + R + SGS + T+K+W+
Sbjct: 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKTIKLWN 156
Query: 320 FRQLDAKRPQVNNQCHLSAVKAIAWCP--WEPTLLATGGGICDQTVRLWNSMNGKEKC-H 376
L + V ++ H V + + P P +++ G D+ V++WN N K K H
Sbjct: 157 --TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG---WDKLVKVWNLANCKLKTNH 211
Query: 377 VKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW---EYPRLHLIEELKIHQERILSAVLS 433
+ + ++ S L S GK D +W E L+ ++ I I + S
Sbjct: 212 IGHTGYLNTVTVSPD-GSLCASGGK-DGQAMLWDLNEGKHLYTLDGGDI----INALCFS 265
Query: 434 PDQTCVAAASADETISIWN 452
P++ + AA+ +I IW+
Sbjct: 266 PNRYWLCAATG-PSIKIWD 283
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 22/195 (11%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNA---YISCVAWKPRTTD-LAVTNTCTEYIDLWHEQ 239
D ++ WNT + +Y D + ++SCV + P +++ + V+ + + +W+
Sbjct: 149 DKTIKLWNTLG-----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 203
Query: 240 EERLIQKLRTHMH--QVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCG 297
+L H + + +G+L + G G + +D+ T GD++
Sbjct: 204 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIINA 261
Query: 298 LKWSPNGRYLASGSNNTVKIWDFR------QLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 351
L +SPN +L + + ++KIWD +L + +++ ++AW TL
Sbjct: 262 LCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL 321
Query: 352 LATGGGICDQTVRLW 366
A G D VR+W
Sbjct: 322 FA---GYTDNLVRVW 333
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 14/162 (8%)
Query: 298 LKWSPNGRYLAS-GSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG 356
L W+P G LAS G + ++IW V ++ H V+ +AW P L +
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 357 GICDQTVRLWNSMNGKEKCHVKT----DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412
D T +W +C V T +++V S+ W+ L T +D S+ +WE
Sbjct: 82 ---DATTCIWKKNQDDFEC-VTTLEGHENEVKSVAWAPSGNLLATC--SRDKSVWVWEVD 135
Query: 413 R---LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 451
+ L H + + V P Q +A+AS D+T+ ++
Sbjct: 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 21/165 (12%)
Query: 298 LKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQC------HLSAVKAIAWCPWEPT 350
+ WSP G YLAS S + T IW K+ Q + +C H + VK++AW P
Sbjct: 67 VAWSPCGNYLASASFDATTCIW-------KKNQDDFECVTTLEGHENEVKSVAWAP-SGN 118
Query: 351 LLATGGGICDQTVRLWNSMNGKE-KCHVKTDSQ---VTSILWSEQYRELVTSHGKQDCSL 406
LLAT D++V +W E +C +S V ++W L ++ L
Sbjct: 119 LLATCSR--DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176
Query: 407 KMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 451
E L+ H+ + S P +A+ S D T+ IW
Sbjct: 177 YREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 118/259 (45%), Gaps = 27/259 (10%)
Query: 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWH----EQEERLIQK-LRTHMHQV--IAMCWN 260
N +++ +A P+ D+ ++ + + I +W E + Q+ LR H H V + + +
Sbjct: 15 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD 74
Query: 261 GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319
G G+ G + +D+ T + + DV+ + +S + R + SGS + T+K+W+
Sbjct: 75 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKTIKLWN 133
Query: 320 FRQLDAKRPQVNNQCHLSAVKAIAWCP--WEPTLLATGGGICDQTVRLWNSMNGKEKC-H 376
L + V ++ H V + + P P +++ G D+ V++WN N K K H
Sbjct: 134 --TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG---WDKLVKVWNLANCKLKTNH 188
Query: 377 VKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW---EYPRLHLIEELKIHQERILSAVLS 433
+ + ++ S L S GK D +W E L+ ++ I I + S
Sbjct: 189 IGHTGYLNTVTVSPD-GSLCASGGK-DGQAMLWDLNEGKHLYTLDGGDI----INALCFS 242
Query: 434 PDQTCVAAASADETISIWN 452
P++ + AA+ +I IW+
Sbjct: 243 PNRYWLCAATG-PSIKIWD 260
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 22/195 (11%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNA---YISCVAWKPRTTD-LAVTNTCTEYIDLWHEQ 239
D ++ WNT + +Y D + ++SCV + P +++ + V+ + + +W+
Sbjct: 126 DKTIKLWNTLG-----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180
Query: 240 EERLIQKLRTHMH--QVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCG 297
+L H + + +G+L + G G + +D+ T GD++
Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIINA 238
Query: 298 LKWSPNGRYLASGSNNTVKIWDFR------QLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 351
L +SPN +L + + ++KIWD +L + +++ ++AW TL
Sbjct: 239 LCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL 298
Query: 352 LATGGGICDQTVRLW 366
A G D VR+W
Sbjct: 299 FA---GYTDNLVRVW 310
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 18/200 (9%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC-TEYIDLWHEQEER 242
D ++ WNT + E ++SCV + P T + + + + +W+ +
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 243 LIQKLRTHMHQV--IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKW 300
L L H V +A+ +G+L + G G +L +D+ + V+ L +
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS--LEANSVIHALCF 610
Query: 301 SPNGRYLASGSNNTVKIWDFR----------QLDAKRPQVNNQCHLSAVKAIAWCP---W 347
SPN +L + + + +KIWD L A+ + +N + + + +C W
Sbjct: 611 SPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670
Query: 348 EPTLLATGGGICDQTVRLWN 367
G D +R+W
Sbjct: 671 SADGSTLFSGYTDGVIRVWG 690
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 13/158 (8%)
Query: 301 SPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359
S +G++ SGS + +++WD + R V H V ++A+ +++
Sbjct: 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFVG---HTKDVLSVAFSLDNRQIVSAS---R 492
Query: 360 DQTVRLWNSMNGKEKCHVKTDSQ-----VTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414
D+T++LWN++ G+ K + + V+ + +S + D ++K+W
Sbjct: 493 DRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC 551
Query: 415 HLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
L L H + + +SPD + A+ D + +W+
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/223 (19%), Positives = 97/223 (43%), Gaps = 18/223 (8%)
Query: 233 IDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREG 292
I +W + + L H V+ + ++ ++ G+ + +DV T T I
Sbjct: 155 IKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI-HHC 213
Query: 293 DVVCGLKWSPNGRYLASGSNNTVKIWDFR---QLDAKRPQVNNQCHLSAVKAIAWCPWEP 349
+ V L+++ NG + + ++ +WD + +R V H +AV + ++
Sbjct: 214 EAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVG---HRAAVNVV---DFDD 266
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
+ + G D+T+++WN+ + V+T + + QYR+ + G D ++++W
Sbjct: 267 KYIVSASG--DRTIKVWNTSTCE---FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW 321
Query: 410 EYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
+ + L+ H+E L + D + + + D I +W+
Sbjct: 322 DIECGACLRVLEGHEE--LVRCIRFDNKRIVSGAYDGKIKVWD 362
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 56/284 (19%), Positives = 119/284 (41%), Gaps = 39/284 (13%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243
D ++ W+ T + + ++ T + C+ + R + +T + + +W +
Sbjct: 152 DNTIKIWDKNTLECKRIL---TGHTGSVLCLQYDER---VIITGSSDSTVRVWDVNTGEM 205
Query: 244 IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN 303
+ L H V+ + +N ++ + +I +D+ + PT IT V+ G + + N
Sbjct: 206 LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS----PTDITLR-RVLVGHRAAVN 260
Query: 304 -----GRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG 357
+Y+ S S + T+K+W+ + R ++ + IA + L+ +G
Sbjct: 261 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK------RGIACLQYRDRLVVSGSS 314
Query: 358 ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEY-----P 412
D T+RLW+ G ++ ++ + + R + G D +K+W+ P
Sbjct: 315 --DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV---SGAYDGKIKVWDLVAALDP 369
Query: 413 RLHL----IEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
R + L H R+ L D+ + ++S D+TI IW+
Sbjct: 370 RAPAGTLCLRTLVEHSGRVFR--LQFDEFQIVSSSHDDTILIWD 411
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/271 (19%), Positives = 123/271 (45%), Gaps = 16/271 (5%)
Query: 194 TNKTQLLVEYPTYDNAYISCVAW---KPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH 250
TN+ +L + + I VAW K ++ VT + + + +W ++ERL +
Sbjct: 18 TNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE 77
Query: 251 MHQV----IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY 306
HQ+ + + + + ++ +I +D+ + D L +SP+ +Y
Sbjct: 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT-LAFSPDSQY 136
Query: 307 LASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 366
LA+G++ V + +++ + + + + +IA+ P + LA+G D + ++
Sbjct: 137 LATGTH--VGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGA--IDGIINIF 191
Query: 367 NSMNGKEKCHVKTDSQ-VTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE 425
+ GK ++ + + S+ +S + LVT+ D +K+++ +L L H
Sbjct: 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA--SDDGYIKIYDVQHANLAGTLSGHAS 249
Query: 426 RILSAVLSPDQTCVAAASADETISIWNCFPR 456
+L+ PD T ++S+D+++ +W+ R
Sbjct: 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/242 (19%), Positives = 107/242 (44%), Gaps = 19/242 (7%)
Query: 219 RTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQV--IAMCWNGNLLSCGTIGGNILHY 276
T +A +++ +I LW + + I+ + +A + L+ GT G + +
Sbjct: 90 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 149
Query: 277 DVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCH 335
V + + TR G + + +SP+G+YLASG+ + + I+D + + + H
Sbjct: 150 GVESGKKEYSLDTR-GKFILSIAYSPDGKYLASGAIDGIINIFD---IATGKLLHTLEGH 205
Query: 336 LSAVKAIAWCPWEPTLLATGGGICDQTVRLWN----SMNGKEKCHVKTDSQVTSILWSEQ 391
++++ + P + LL T D +++++ ++ G H S V ++ +
Sbjct: 206 AMPIRSLTFSP-DSQLLVTASD--DGYIKIYDVQHANLAGTLSGHA---SWVLNVAFCPD 259
Query: 392 YRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 451
V+S D S+K+W+ + HQ+++ + + + + + D+ I I+
Sbjct: 260 DTHFVSS--SSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Query: 452 NC 453
+C
Sbjct: 318 DC 319
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 85/231 (36%), Gaps = 28/231 (12%)
Query: 244 IQKLRTHMHQVIAMCWNG---NLLSCGTIGGNILHYDVRTHSDYPTAIT--------REG 292
+ + H V + +N N+L+ G G I +D+ ++ P+ T
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV 165
Query: 293 DVVCGLKWSPN--GRYLASGSNNTVKIWDFR------QLDAKRPQVNNQCHLSAVKAIAW 344
D V L W+ + + ++GS+N IWD + L P + LS V+ W
Sbjct: 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVE---W 222
Query: 345 CPWEPTLLATG-GGICDQTVRLWNSMNGKEKCHVKTDSQVTSIL---WSEQYRELVTSHG 400
P T +AT G D ++ +W+ N IL W Q L+ S G
Sbjct: 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282
Query: 401 KQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT-CVAAASADETISI 450
+ D ++ +W + + +P+ A AS D I +
Sbjct: 283 R-DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 43/183 (23%)
Query: 271 GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQV 330
G++ +D T + T R + V K S R ++ +NTV I++ K
Sbjct: 129 GHVFLFDTGTSNGNLTGQARAMNSV-DFKPSRPFRIISGSDDNTVAIFEGPPFKFKS--- 184
Query: 331 NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSE 390
H V ++ + P + +L A+ GG D T+ L+N ++G + T +
Sbjct: 185 TFGEHTKFVHSVRYNP-DGSLFASTGG--DGTIVLYNGVDGTK----------TGVF--- 228
Query: 391 QYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISI 450
+D SLK H + SPD T +A+ASAD+TI I
Sbjct: 229 -----------EDDSLKNVA------------HSGSVFGLTWSPDGTKIASASADKTIKI 265
Query: 451 WNC 453
WN
Sbjct: 266 WNV 268
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH------VKTDSQVTSILW 388
H + V ++W P + LATG D +V +WN MN K H S V S++W
Sbjct: 535 HTAKVACVSWSP-DNVRLATGS--LDNSVIVWN-MN-KPSDHPIIIKGAHAMSSVNSVIW 589
Query: 389 SEQYRELVTSHGKQDCSLKMWEYP 412
E QD ++K W P
Sbjct: 590 ---LNETTIVSAGQDSNIKFWNVP 610
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 351 LLATGGGICDQTVRLWNSMNGKEKCHVKT---DSQVTSILWSEQYRELVTSHGKQDCSLK 407
+A GG D V ++ ++G VKT +++TS+ +S LV + D S K
Sbjct: 462 FVAVGG--QDSKVHVYK-LSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT----DQSRK 514
Query: 408 MWEYPRLHLIE-----ELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
+ Y + E H ++ SPD +A S D ++ +WN
Sbjct: 515 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 24/184 (13%)
Query: 282 SDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLD-AKRPQVNNQCHLSAV 339
S++P+ T DV+ S N SGS + TV++WD R A R ++ +++V
Sbjct: 198 SEFPSGHT--ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV 255
Query: 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE-----KCHVKTDSQ---VTSILWSEQ 391
K + P G G D T RL++ G + + + D++ VTS+ +S
Sbjct: 256 K------FFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS 309
Query: 392 YRELVTSHGKQDCSLKMWEYPRLHLIEELKI----HQERILSAVLSPDQTCVAAASADET 447
R L + DC +W+ ++ L H+ RI LS D + + S D+
Sbjct: 310 GRLLFAGYSNGDC--YVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN 367
Query: 448 ISIW 451
+ IW
Sbjct: 368 LKIW 371
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAA 441
+V S+ W+ + +V++ QD L +W +K+H ++ +P+ VA
Sbjct: 68 KVYSLDWTPEKNWIVSA--SQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125
Query: 442 ASADETISIWN 452
D SI+N
Sbjct: 126 GGLDSACSIFN 136
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 15/182 (8%)
Query: 304 GRYLASGSNNTVKIWDFR----QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359
G+++A + V DFR + V+ + H +++IA P +P +L+ G
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS---GSD 117
Query: 360 DQTVRLWNSMN--GKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLI 417
D TV+LWN N E+ + V + ++ + S G D ++K+W +
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS-GCLDRTVKVWSLGQSTPN 176
Query: 418 EELKIHQERILSAV---LSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFA 474
L QER ++ V PD+ + AS D TI IW+ + K A G S++ FA
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY--QTKSCVATLEGHMSNVSFA 234
Query: 475 IL 476
+
Sbjct: 235 VF 236
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 302 PNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 360
P+ Y+ + S++ T+KIWD++ K + H+S V + P P +++ G D
Sbjct: 196 PDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNVSFAVFHPTLPIIIS---GSED 249
Query: 361 QTVRLWNS 368
T+++WNS
Sbjct: 250 GTLKIWNS 257
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 15/182 (8%)
Query: 304 GRYLASGSNNTVKIWDFR----QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359
G+++A + V DFR + V+ + H +++IA P +P +L+ G
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS---GSD 117
Query: 360 DQTVRLWNSMN--GKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLI 417
D TV+LWN N E+ + V + ++ + S G D ++K+W +
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS-GCLDRTVKVWSLGQSTPN 176
Query: 418 EELKIHQERILSAV---LSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFA 474
L QER ++ V PD+ + AS D TI IW+ + K A G S++ FA
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY--QTKSCVATLEGHMSNVSFA 234
Query: 475 IL 476
+
Sbjct: 235 VF 236
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 302 PNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 360
P+ Y+ + S++ T+KIWD++ K + H+S V + P P +++ G D
Sbjct: 196 PDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNVSFAVFHPTLPIIIS---GSED 249
Query: 361 QTVRLWNS 368
T+++WNS
Sbjct: 250 GTLKIWNS 257
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 15/182 (8%)
Query: 304 GRYLASGSNNTVKIWDFR----QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359
G+++A + V DFR + V+ + H +++IA P +P +L+ G
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS---GSD 117
Query: 360 DQTVRLWNSMN--GKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLI 417
D TV+LWN N E+ + V + ++ + S G D ++K+W +
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS-GCLDRTVKVWSLGQSTPN 176
Query: 418 EELKIHQERILSAVLS---PDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFA 474
L QER ++ V PD+ + AS D TI IW+ + K A G S++ FA
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY--QTKSCVATLEGHMSNVSFA 234
Query: 475 IL 476
+
Sbjct: 235 VF 236
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 302 PNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 360
P+ Y+ + S++ T+KIWD++ K + H+S V + P P +++ G D
Sbjct: 196 PDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNVSFAVFHPTLPIIIS---GSED 249
Query: 361 QTVRLWNS 368
T+++WNS
Sbjct: 250 GTLKIWNS 257
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 360 DQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEE 419
D T+++W+++ GK C ++T T +WS Q R+ + G D +LK+W I
Sbjct: 138 DNTLKVWSAVTGK--C-LRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHT 194
Query: 420 LKIHQERILSAVLSPDQTCVAAASADETISIWN 452
L H + L + V + S D T+ +W+
Sbjct: 195 LYGHTSTVRCMHLHEKR--VVSGSRDATLRVWD 225
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 25/154 (16%)
Query: 305 RYLASGSNNTVKIWDFRQLDAKRPQVNNQC------HLSAVKAIAWCPWEPTLLATGGGI 358
R ++ + T+++WD QC H++AV+ + + G
Sbjct: 211 RVVSGSRDATLRVWDIE---------TGQCLHVLMGHVAAVRCVQYDGRRVV-----SGA 256
Query: 359 CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE 418
D V++W+ E C + T T+ ++S Q+ + G D S+++W+ + I
Sbjct: 257 YDFMVKVWDPET--ETC-LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 313
Query: 419 ELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
L HQ L++ + + + +AD T+ IW+
Sbjct: 314 TLTGHQS--LTSGMELKDNILVSGNADSTVKIWD 345
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 15/182 (8%)
Query: 304 GRYLASGSNNTVKIWDFR----QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359
G+++A + V DFR + V+ + H +++IA P +P +L+ G
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS---GSD 117
Query: 360 DQTVRLWNSMN--GKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLI 417
D TV+LWN N E+ + V + ++ + S G D ++K+W +
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS-GCLDRTVKVWSLGQSTPN 176
Query: 418 EELKIHQERILSAVLS---PDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFA 474
L QER ++ V PD+ + AS D TI IW+ + K A G S++ FA
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY--QTKSCVATLEGHMSNVSFA 234
Query: 475 IL 476
+
Sbjct: 235 VF 236
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 302 PNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 360
P+ Y+ + S++ T+KIWD++ K + H+S V + P P +++ G D
Sbjct: 196 PDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNVSFAVFHPTLPIIIS---GSED 249
Query: 361 QTVRLWNS 368
T+++WNS
Sbjct: 250 GTLKIWNS 257
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 23/190 (12%)
Query: 202 EYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR----THMHQVIAM 257
++P + V W P T + +++ + + +W + + H + +
Sbjct: 93 DHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPV 152
Query: 258 CWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYL--ASGSNNTV 315
L++ GT G + D+++ S +++ + WSP Y+ + +++ V
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL-AVSWSPRYDYILATASADSRV 211
Query: 316 KIWDFR----------QLDAKRPQV---NNQCHLSAVKAIAWCPWEPTLLATGGGICDQT 362
K+WD R Q + K+ Q N H V + + LL G D
Sbjct: 212 KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG---TDNR 268
Query: 363 VRLWNSMNGK 372
+RLWNS NG+
Sbjct: 269 MRLWNSSNGE 278
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 201 VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ--KLRTHMHQVIAMC 258
+ Y ++ ISC AW T +A+ E + ++ + + +Q +L+ H QV +
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHE-VHIYEKSGNKWVQVHELKEHNGQVTGID 59
Query: 259 W---NGNLLSCGTIGGNILHYDVRTHSDYPT-AITREGDVVCGLKWSPNGRYLASGSNN- 313
W + +++CGT N + ++ + PT I R ++W+PN + A GS +
Sbjct: 60 WAPDSNRIVTCGT-DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR 118
Query: 314 TVKIWDFRQLD-------AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 366
+ I F Q + K+P + L W P + G CD R++
Sbjct: 119 VISICYFEQENDWWVCKHIKKPIRSTVLSLD---------WHPNSVLLAAGSCDFKCRIF 169
Query: 367 NS 368
++
Sbjct: 170 SA 171
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 8/146 (5%)
Query: 293 DVVCGLKWSPN---GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWE 348
D + L +SP G +L +GS N V+ W+ + P+ Q H V + W
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-QMHTGPVLDVCWSDDG 98
Query: 349 PTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKM 408
+ CD+T ++W+ + + + D+ V +I W + G D +LK
Sbjct: 99 SKVFTAS---CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155
Query: 409 WEYPRLHLIEELKIHQERILSAVLSP 434
W+ + + L++ + + V+ P
Sbjct: 156 WDTRSSNPMMVLQLPERCYCADVIYP 181
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 201 VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ--KLRTHMHQVIAMC 258
+ Y ++ ISC AW T +A+ E + ++ + + +Q +L+ H QV +
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHE-VHIYEKSGNKWVQVHELKEHNGQVTGVD 59
Query: 259 W---NGNLLSCGTIGGNILHYDVRTHSDYPT-AITREGDVVCGLKWSPNGRYLASGSNN- 313
W + +++CGT N + ++ + PT I R ++W+PN + A GS +
Sbjct: 60 WAPDSNRIVTCGT-DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR 118
Query: 314 TVKIWDFRQLD-------AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 366
+ I F Q + K+P + L W P + G CD R++
Sbjct: 119 VISICYFEQENDWWVCKHIKKPIRSTVLSLD---------WHPNSVLLAAGSCDFKCRIF 169
Query: 367 NS 368
++
Sbjct: 170 SA 171
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 402 QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456
D +K W + + + H I + SPD T +A+A D I +WN +
Sbjct: 174 NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK 228
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 293 DVVCGLKWSPNGRYLASGSNNTVKIWDFRQ---LDAKRPQVNNQCHLSAVKAI--AWCPW 347
D V L +SPN +LA+ + +K++ +D RP+ + A+ AW
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 348 EPTLLATGGGICDQTVRLW 366
TL A G D +R+W
Sbjct: 298 GQTLFA---GYTDNVIRVW 313
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 28/228 (12%)
Query: 247 LRTHMHQVIA-MCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR 305
LR HM VI + + N + G I YD + + ++ V LK++ G
Sbjct: 117 LRGHMTSVITCLQFEDNYVITGADDKMIRVYD-SINKKFLLQLSGHDGGVWALKYAHGGI 175
Query: 306 YLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRL 365
++ ++ TV++WD ++ + H S V+ + ++ G D T+ +
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVF---EGHNSTVRCLDIVEYKNIKYIVTGS-RDNTLHV 231
Query: 366 WN-------SMNGKEK-----CHVKTDS---------QVTSILWSEQYRELVTSHGKQDC 404
W +G+E H ++ + S+ + +V S G D
Sbjct: 232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS-GSYDN 290
Query: 405 SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
+L +W+ ++ + L H +RI S + ++ +AS D TI IW+
Sbjct: 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 403 DCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKA 462
D +L++W+ + HQ + S SPD + +A A+ I +WN K A
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
Query: 463 RQ 464
+
Sbjct: 157 EK 158
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 80/199 (40%), Gaps = 29/199 (14%)
Query: 276 YDVRTHSDYPTAITREGDVVCGLKWSPNGR-YLASGSNNTVKIWDFRQLDAKRPQVNNQC 334
+D+RT + Y + + +V + +SP+ R L++G+ +K+W+ + K +
Sbjct: 103 WDLRTGTTYKRFVGHQSEVYS-VAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKEN 160
Query: 335 HLSAVKAIAWC----------PWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVT 384
H V + + P+ P + G D +++WN+ +S V
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVG---WDGRLKVWNTNFQIRYTFKAHESNVN 217
Query: 385 SILWSEQYRELVTSHGKQDCSLKMWE-----YPRLHLIEELKIHQERILSAVLSPDQTCV 439
+ S + + T G +D L +W+ YP+ I+Q +P V
Sbjct: 218 HLSISPNGKYIAT--GGKDKKLLIWDILNLTYPQREFDAGSTINQ-----IAFNPKLQWV 270
Query: 440 AAASADETISIWNCFPRDK 458
A + D+ + I+N + K
Sbjct: 271 AVGT-DQGVKIFNLMTQSK 288
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 293 DVVCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 351
D+V L +G SG + +VK+WD Q K + H S V +A CP + T+
Sbjct: 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ---KAVLKSYNAHSSEVNCVAACPGKDTI 196
Query: 352 LATGGGICDQTVRLWNSMNGKEKCHVK---TDSQVTSILW 388
+ G D + LW++ K + +D+ TS+ W
Sbjct: 197 FLSCGE--DGRILLWDTRKPKPATRIDFCASDTIPTSVTW 234
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 17/164 (10%)
Query: 301 SPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359
+ +G Y S S + T+++WD + + V ++ + +V + +++ +G
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD----IDKKASMIISGS--R 127
Query: 360 DQTVRLWNSMNGKEKC------HVKTDSQVTSILWSEQYRELVTS-HGKQDCSLKMWEYP 412
D+T+++W K +C H SQV + + + VT D +K W
Sbjct: 128 DKTIKVWTI---KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456
+ + + H I + SPD T +A+A D I +WN +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 260 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 319
+G L++ G I+ +++ T + D V L +SPN +LA+ + +K++
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 320 FRQ---LDAKRPQVNNQCHLSAVKAI--AWCPWEPTLLATGGGICDQTVRLWNSM 369
+D RP+ + A+ AW TL A G D +R+W M
Sbjct: 265 LDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFA---GYTDNVIRVWQVM 316
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 17/164 (10%)
Query: 301 SPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359
+ +G Y S S + T+++WD + + V ++ + +V + +++ +G
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD----IDKKASMIISGS--R 127
Query: 360 DQTVRLWNSMNGKEKC------HVKTDSQVTSILWSEQYRELVTS-HGKQDCSLKMWEYP 412
D+T+++W K +C H SQV + + + VT D +K W
Sbjct: 128 DKTIKVWTI---KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456
+ + + H I + SPD T +A+A D I +WN +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 260 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 319
+G L++ G I+ +++ T + D V L +SPN +LA+ + +K++
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 320 FRQ---LDAKRPQVNNQCHLSAVKAI--AWCPWEPTLLATGGGICDQTVRLWNSM 369
+D RP+ + A+ AW TL A G D +R+W M
Sbjct: 265 LDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA---GYTDNVIRVWQVM 316
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 19/165 (11%)
Query: 301 SPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359
+ +G Y S S + T+++WD + + V ++ + +V + +++ +G
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD----IDKKASMIISGS--R 127
Query: 360 DQTVRLWNSMNGKEKC------HVKTDSQVTSILWSEQYRELVT--SHGKQDCSLKMWEY 411
D+T+++W K +C H SQV + + + VT S G D +K W
Sbjct: 128 DKTIKVWTI---KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-NDKMVKAWNL 183
Query: 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456
+ + + H I + SPD T +A+A D I +WN +
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 260 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 319
+G L++ G I+ +++ T + D V L +SPN +LA+ + +K++
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 320 FRQ---LDAKRPQVNNQCHLSAVKAI--AWCPWEPTLLATGGGICDQTVRLW 366
+D RP+ + A+ AW TL A G D +R+W
Sbjct: 265 LDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA---GYTDNVIRVW 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 17/164 (10%)
Query: 301 SPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359
+ +G Y S S + T+++WD + + V ++ + +V + +++ +G
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD----IDKKASMIISGS--R 127
Query: 360 DQTVRLWNSMNGKEKC------HVKTDSQVTSILWSEQYRELVTS-HGKQDCSLKMWEYP 412
D+T+++W K +C H SQV + + + VT D +K W
Sbjct: 128 DKTIKVWTI---KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456
+ + + H I + SPD T +A+A D I +WN +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 260 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 319
+G L++ G I+ +++ T + D V L +SPN +LA+ + +K++
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 320 FRQ---LDAKRPQVNNQCHLSAVKAI--AWCPWEPTLLATGGGICDQTVRLWNSM 369
+D RP+ + A+ AW TL A G D +R+W M
Sbjct: 265 LDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA---GYTDNVIRVWQVM 316
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 378 KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT 437
KT +QVT + WS +VT G ++ L++W L+ L H+ I+S + D T
Sbjct: 106 KTTNQVTCLAWSHDGNSIVT--GVENGELRLWNKTGA-LLNVLNFHRAPIVSVKWNKDGT 162
Query: 438 CVAAASADETISIWNCF 454
+ + + +WN
Sbjct: 163 HIISMDVENVTILWNVI 179
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 17/164 (10%)
Query: 301 SPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359
+ +G Y S S + T+++WD + + V ++ + +V + +++ +G
Sbjct: 68 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD----IDKKASMIISGS--R 121
Query: 360 DQTVRLWNSMNGKEKC------HVKTDSQVTSILWSEQYRELVTS-HGKQDCSLKMWEYP 412
D+T+++W K +C H SQV + + + VT D +K W
Sbjct: 122 DKTIKVWTI---KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456
+ + + H I + SPD T +A+A D I +WN +
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 222
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 260 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 319
+G L++ G I+ +++ T + D V L +SPN +LA+ + +K++
Sbjct: 201 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFS 258
Query: 320 FRQ---LDAKRPQVNNQCHLSAVKAI--AWCPWEPTLLATGGGICDQTVRLWNSM 369
+D RP+ + A+ AW TL A G D +R+W M
Sbjct: 259 LDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA---GYTDNVIRVWQVM 310
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 69/183 (37%), Gaps = 24/183 (13%)
Query: 292 GDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP-- 349
G+VVC + S R++ +G VK+WD K P C L+ I C P
Sbjct: 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDC-LNRDNYIRSCKLLPDG 109
Query: 350 -TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGK------Q 402
TL+ G T+ +W+ + + S + Y ++ K
Sbjct: 110 CTLIVGGEA---STLSIWDLAAPTPRIKAELTSSAPAC-----YALAISPDSKVCFSCCS 161
Query: 403 DCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKA 462
D ++ +W+ L+ + + H + +S D T + D T+ W+ R+
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL------REG 215
Query: 463 RQV 465
RQ+
Sbjct: 216 RQL 218
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 225 VTNTCTEYIDLWHEQEERLIQKLRTHMHQVI---AMCWNGNLLSCGTIGGNILHYDVRTH 281
+T + + I LW Q +++I+ + V+ A+ +G+ +SC G I D T
Sbjct: 159 LTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTG 215
Query: 282 SDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIW 318
T E V C +K PNG ++ G + TV+IW
Sbjct: 216 DVLRTYEGHESFVYC-IKLLPNGDIVSCGEDRTVRIW 251
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
G D +L +W+ + + L H +RI S + ++ +AS D TI IW+
Sbjct: 286 GSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWD 338
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK-------IHQERILSAVLS 433
+ V I W ++ S G +DC++ +WE P L+ L+ H +R+
Sbjct: 82 APVLDIAWXPHNDNVIAS-GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH 140
Query: 434 PD-QTCVAAASADETISIWNC 453
P Q + +A D I +W+
Sbjct: 141 PTAQNVLLSAGXDNVILVWDV 161
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 306 YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 354
+LA+ S + TVKIWD RQ+ K + + H V A + P LL T
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 315
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 306 YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 354
+LA+ S + TVKIWD RQ+ K + + H V A + P LL T
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 306 YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 354
+LA+ S + TVKIWD RQ+ K + + H V A + P LL T
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314
>pdb|3V1V|A Chain A, Crystal Structure Of 2-Methylisoborneol Synthase From
Streptomyces Coelicolor A3(2) In Complex With Mg2+ And
Geranyl-S-Thiolodiphosphate
Length = 433
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 80 RSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGF--------EIDRKKVLNQSKR 131
R +YDS +++ ++ YR R HL +L G E+ + Q
Sbjct: 238 RRAYDSAMGYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNN 297
Query: 132 TVSPTQFLRTLG--KLPRKVKAKPE--RIL----EAPSIINDFYT 168
T+G +LP + A+P+ R++ A +I+ND Y+
Sbjct: 298 FRPCPTITDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYS 342
>pdb|3V1X|A Chain A, Crystal Structure Of 2-Methylisoborneol Synthase From
Streptomyces Coelicolor A3(2) In Complex With Mg2+ And
2-Fluorogeranyl Diphosphate
Length = 461
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 80 RSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGF--------EIDRKKVLNQSKR 131
R +YDS +++ ++ YR R HL +L G E+ + Q
Sbjct: 266 RRAYDSAMGYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNN 325
Query: 132 TVSPTQFLRTLG--KLPRKVKAKPE--RIL----EAPSIINDFYT 168
T+G +LP + A+P+ R++ A +I+ND Y+
Sbjct: 326 FRPCPTITDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYS 370
>pdb|4AQF|C Chain C, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
pdb|4AQG|A Chain A, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
Length = 483
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 78 VDRSSYDSLCSHYL-----LQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRT 132
VDR+S DS+ ++ L Q+ + + R Q + +F + + + + V ++ T
Sbjct: 269 VDRASADSMITNLLKHIAKAQELYKNSSALRAQSAQIDTAFSSY-YWLYKAGVTPETFPT 327
Query: 133 VSPTQFLRTLGKLPRKVKAKPERILEAP 160
VS QFL LGK PR K + +L P
Sbjct: 328 VS--QFLFELGKQPRGTKKMKKALLSTP 353
>pdb|4AQF|A Chain A, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
pdb|4AQF|B Chain B, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
Length = 483
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 78 VDRSSYDSLCSHYL-----LQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRT 132
VDR+S DS+ ++ L Q+ + + R Q + +F + + + + V ++ T
Sbjct: 269 VDRASADSMITNLLKHIAKAQELYKNSSALRAQSAQIDTAFSSY-YWLYKAGVTPETFPT 327
Query: 133 VSPTQFLRTLGKLPRKVKAKPERILEAP 160
VS QFL LGK PR K + +L P
Sbjct: 328 VS--QFLFELGKQPRGTKKMKKALLSTP 353
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 50 DSQVTSILWSEQYRESSRSKMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRR 109
+S +IL ++Q + + K + +R + + + H + Q+ N++ + +E+ +
Sbjct: 469 ESMTDAILQTDQTL-TEKEKEIEVERVKAESAQASAKMLHEM-QRKNEQMMEQKERSYQE 526
Query: 110 HLSFLLHGFEIDRKKVLNQSKRTVS 134
HL L E DR ++L + +RT++
Sbjct: 527 HLKQLTEKMENDRVQLLKEQERTLA 551
>pdb|1PC3|A Chain A, Crystal Structure Of The Extracellular Phosphate Abc
Transport Receptor (Psts-1) And Immunodominant Antigen
Of M. Tuberculosis.
pdb|1PC3|B Chain B, Crystal Structure Of The Extracellular Phosphate Abc
Transport Receptor (Psts-1) And Immunodominant Antigen
Of M. Tuberculosis
Length = 350
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 303 NGRYLASGSNNTVKIWDFRQLDAKRPQVN 331
NG+ LA+ T+K WD Q+ A P VN
Sbjct: 122 NGKVLAAMYQGTIKTWDDPQIAALNPGVN 150
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 241 ERLIQKLRTH--MHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVC 296
E I K+ TH + W+ G + G G I YDV + +Y +I +
Sbjct: 163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSIS 222
Query: 297 GLKWSPNGRYLASGSNNT 314
+++SP+ Y + S +T
Sbjct: 223 DMQFSPDLTYFITSSRDT 240
>pdb|1PZN|A Chain A, Rad51 (Rada)
pdb|1PZN|B Chain B, Rad51 (Rada)
pdb|1PZN|C Chain C, Rad51 (Rada)
pdb|1PZN|D Chain D, Rad51 (Rada)
pdb|1PZN|E Chain E, Rad51 (Rada)
pdb|1PZN|F Chain F, Rad51 (Rada)
pdb|1PZN|G Chain G, Rad51 (Rada)
Length = 349
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 61 QYRESSRSKMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFL 114
Q E +++NTDR V DSL SH+ + ++ R+QK +HL+ L
Sbjct: 216 QQAEDKIKELLNTDR-PVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,468,218
Number of Sequences: 62578
Number of extensions: 634994
Number of successful extensions: 2176
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1668
Number of HSP's gapped (non-prelim): 379
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)