Query psy8285
Match_columns 507
No_of_seqs 737 out of 2908
Neff 11.4
Searched_HMMs 29240
Date Fri Aug 16 23:35:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gga_A P55CDC, cell division c 100.0 8.2E-52 2.8E-56 397.5 45.4 380 80-462 4-402 (420)
2 1nr0_A Actin interacting prote 100.0 1E-48 3.5E-53 393.5 45.7 388 2-478 55-549 (611)
3 4ggc_A P55CDC, cell division c 100.0 3.9E-47 1.3E-51 351.4 45.2 313 144-458 4-318 (318)
4 2ymu_A WD-40 repeat protein; u 100.0 1.6E-47 5.5E-52 383.9 45.5 440 2-478 12-480 (577)
5 1nr0_A Actin interacting prote 100.0 2.4E-47 8.3E-52 383.5 40.3 374 2-453 143-609 (611)
6 4aez_A CDC20, WD repeat-contai 100.0 2.1E-46 7.2E-51 357.8 44.5 373 74-462 1-387 (401)
7 2ymu_A WD-40 repeat protein; u 100.0 2.2E-46 7.4E-51 375.7 43.7 354 2-452 217-577 (577)
8 3ow8_A WD repeat-containing pr 100.0 6.1E-44 2.1E-48 329.1 39.3 279 164-453 31-319 (321)
9 1got_B GT-beta; complex (GTP-b 100.0 4.9E-43 1.7E-47 326.5 42.0 275 165-452 55-340 (340)
10 1vyh_C Platelet-activating fac 100.0 1.3E-43 4.5E-48 338.7 38.4 278 165-454 108-410 (410)
11 3sfz_A APAF-1, apoptotic pepti 100.0 4.1E-44 1.4E-48 390.2 37.6 424 2-480 611-1193(1249)
12 1vyh_C Platelet-activating fac 100.0 1E-43 3.5E-48 339.5 35.0 280 2-412 104-410 (410)
13 1r5m_A SIR4-interacting protei 100.0 8.7E-43 3E-47 335.8 39.2 273 167-454 110-424 (425)
14 4gqb_B Methylosome protein 50; 100.0 4.4E-43 1.5E-47 325.7 35.0 240 167-415 84-333 (344)
15 2oaj_A Protein SNI1; WD40 repe 100.0 4.5E-43 1.6E-47 364.8 37.1 386 2-474 13-631 (902)
16 3ow8_A WD repeat-containing pr 100.0 1.8E-42 6.1E-47 319.3 35.8 232 168-412 83-320 (321)
17 4g56_B MGC81050 protein; prote 100.0 4.8E-43 1.7E-47 328.2 32.4 241 168-417 97-347 (357)
18 4gqb_B Methylosome protein 50; 100.0 2.2E-42 7.5E-47 321.0 35.4 278 166-458 31-334 (344)
19 1got_B GT-beta; complex (GTP-b 100.0 5.5E-42 1.9E-46 319.4 37.5 279 2-410 51-340 (340)
20 2pbi_B Guanine nucleotide-bind 100.0 2.8E-41 9.7E-46 316.0 40.8 275 165-452 64-354 (354)
21 1pgu_A Actin interacting prote 100.0 1.1E-41 3.8E-46 344.2 40.8 390 2-477 59-596 (615)
22 2pm9_A Protein WEB1, protein t 100.0 4.2E-43 1.4E-47 337.1 27.4 279 168-456 70-415 (416)
23 2ynn_A Coatomer subunit beta'; 100.0 2E-41 7E-46 310.3 37.1 281 2-413 9-302 (304)
24 1gxr_A ESG1, transducin-like e 100.0 1.1E-40 3.8E-45 310.7 42.3 274 168-454 54-336 (337)
25 2ynn_A Coatomer subunit beta'; 100.0 7.3E-41 2.5E-45 306.6 39.5 279 166-456 14-303 (304)
26 3frx_A Guanine nucleotide-bind 100.0 5.9E-41 2E-45 309.3 38.9 279 165-456 17-318 (319)
27 2pbi_B Guanine nucleotide-bind 100.0 2.6E-41 8.8E-46 316.2 36.8 280 2-410 60-354 (354)
28 3iz6_a 40S ribosomal protein R 100.0 2E-42 7E-47 327.3 28.7 286 2-415 62-377 (380)
29 3sfz_A APAF-1, apoptotic pepti 100.0 3.1E-42 1E-46 375.5 34.1 443 2-478 653-1231(1249)
30 4g56_B MGC81050 protein; prote 100.0 1.2E-41 4.1E-46 318.7 32.4 283 165-459 42-347 (357)
31 4aow_A Guanine nucleotide-bind 100.0 1.1E-40 3.6E-45 311.3 38.3 241 207-457 85-339 (340)
32 3iz6_a 40S ribosomal protein R 100.0 1E-41 3.5E-46 322.5 31.7 281 165-457 66-377 (380)
33 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.7E-41 2.3E-45 312.5 36.7 287 167-461 18-341 (345)
34 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-41 7.1E-46 352.3 36.7 384 4-461 56-670 (902)
35 3frx_A Guanine nucleotide-bind 100.0 1E-40 3.4E-45 307.8 34.5 231 168-414 68-318 (319)
36 1erj_A Transcriptional repress 100.0 5.8E-40 2E-44 312.0 39.9 281 165-456 64-390 (393)
37 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-40 5.4E-45 310.0 34.8 246 168-420 64-342 (345)
38 4ery_A WD repeat-containing pr 100.0 2.2E-39 7.7E-44 298.4 41.5 277 165-454 23-311 (312)
39 1pgu_A Actin interacting prote 100.0 3.4E-40 1.1E-44 333.4 38.7 387 3-475 15-541 (615)
40 4ery_A WD repeat-containing pr 100.0 7.3E-40 2.5E-44 301.7 36.6 284 2-412 19-311 (312)
41 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.2E-39 7.5E-44 313.8 40.4 265 171-456 165-443 (445)
42 3vl1_A 26S proteasome regulato 100.0 1.8E-40 6.2E-45 319.2 30.9 271 172-455 104-419 (420)
43 2xzm_R RACK1; ribosome, transl 100.0 3.6E-39 1.2E-43 300.8 38.3 277 166-456 22-341 (343)
44 2hes_X YDR267CP; beta-propelle 100.0 5.1E-39 1.8E-43 297.9 36.8 282 166-455 15-328 (330)
45 1erj_A Transcriptional repress 100.0 5.9E-39 2E-43 305.0 38.0 238 165-413 123-389 (393)
46 2xzm_R RACK1; ribosome, transl 100.0 3.9E-39 1.3E-43 300.6 34.8 232 167-414 78-341 (343)
47 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-38 4.1E-43 332.6 41.6 342 2-478 9-405 (814)
48 3v7d_B Cell division control p 100.0 1.3E-38 4.5E-43 310.3 38.5 267 169-452 166-460 (464)
49 3zwl_B Eukaryotic translation 100.0 8.1E-38 2.8E-42 295.1 39.7 285 165-461 32-352 (369)
50 2j04_B YDR362CP, TAU91; beta p 100.0 5E-40 1.7E-44 320.1 24.6 263 178-456 228-518 (524)
51 2pm9_A Protein WEB1, protein t 100.0 3.6E-39 1.2E-43 309.7 29.2 286 167-461 14-343 (416)
52 2hes_X YDR267CP; beta-propelle 100.0 6.3E-38 2.1E-42 290.5 33.3 238 168-413 61-328 (330)
53 1sq9_A Antiviral protein SKI8; 100.0 9.9E-38 3.4E-42 297.8 34.5 281 165-457 16-397 (397)
54 3dm0_A Maltose-binding peripla 100.0 2E-37 6.8E-42 316.6 38.8 279 165-454 382-692 (694)
55 3ei3_B DNA damage-binding prot 100.0 5.8E-37 2E-41 290.9 38.6 277 165-455 73-382 (383)
56 3mkq_A Coatomer beta'-subunit; 100.0 4E-38 1.4E-42 328.7 33.5 380 2-480 51-483 (814)
57 4e54_B DNA damage-binding prot 100.0 4.2E-38 1.5E-42 303.5 31.1 287 165-459 119-434 (435)
58 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-36 4E-41 280.4 38.7 278 165-463 18-304 (313)
59 3zwl_B Eukaryotic translation 100.0 2.7E-37 9.2E-42 291.5 34.3 287 2-420 28-353 (369)
60 3i2n_A WD repeat-containing pr 100.0 1.8E-37 6E-42 291.5 32.3 282 165-458 18-356 (357)
61 1k8k_C P40, ARP2/3 complex 41 100.0 2E-37 6.8E-42 292.9 32.0 286 166-459 9-365 (372)
62 3dm0_A Maltose-binding peripla 100.0 4.2E-37 1.4E-41 314.2 36.4 230 168-412 433-692 (694)
63 3i2n_A WD repeat-containing pr 100.0 1.9E-37 6.4E-42 291.3 30.6 286 2-416 14-356 (357)
64 3ei3_B DNA damage-binding prot 100.0 8.5E-37 2.9E-41 289.7 35.2 281 2-413 69-382 (383)
65 1gxr_A ESG1, transducin-like e 100.0 5E-37 1.7E-41 286.0 32.5 297 167-477 11-318 (337)
66 1r5m_A SIR4-interacting protei 100.0 1.4E-36 4.9E-41 292.3 35.8 279 167-457 47-363 (425)
67 4a11_B DNA excision repair pro 100.0 2.9E-36 9.9E-41 288.6 36.6 273 167-455 101-405 (408)
68 3k26_A Polycomb protein EED; W 100.0 3.8E-37 1.3E-41 290.2 29.3 278 165-455 18-366 (366)
69 2pm7_B Protein transport prote 100.0 5.8E-36 2E-40 273.0 35.1 246 203-455 5-285 (297)
70 3vl1_A 26S proteasome regulato 100.0 5.2E-37 1.8E-41 295.0 29.5 276 168-458 59-368 (420)
71 1sq9_A Antiviral protein SKI8; 100.0 8.3E-37 2.8E-41 291.4 30.0 224 178-415 84-397 (397)
72 4e54_B DNA damage-binding prot 100.0 2.9E-37 9.9E-42 297.6 26.0 241 168-417 167-434 (435)
73 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-36 6.3E-41 286.2 29.5 238 168-416 55-364 (372)
74 1p22_A F-BOX/WD-repeat protein 100.0 8E-36 2.7E-40 287.8 34.3 282 167-470 135-429 (435)
75 3k26_A Polycomb protein EED; W 100.0 1.8E-36 6.1E-41 285.6 29.2 234 168-412 72-365 (366)
76 3dwl_C Actin-related protein 2 100.0 2.7E-37 9.3E-42 292.6 23.4 278 167-453 13-377 (377)
77 3odt_A Protein DOA1; ubiquitin 100.0 1.6E-35 5.6E-40 272.7 33.8 280 2-420 14-303 (313)
78 3v7d_B Cell division control p 100.0 2.3E-34 7.9E-39 280.3 42.3 275 168-461 125-427 (464)
79 3gre_A Serine/threonine-protei 100.0 4.7E-36 1.6E-40 289.9 29.3 274 167-452 65-437 (437)
80 4h5i_A Guanine nucleotide-exch 100.0 9.9E-36 3.4E-40 279.3 30.4 279 165-456 14-344 (365)
81 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-34 6.3E-39 279.3 39.6 273 167-462 121-398 (445)
82 3bg1_A Protein SEC13 homolog; 100.0 4.4E-36 1.5E-40 276.3 26.0 246 204-455 10-293 (316)
83 4a11_B DNA excision repair pro 100.0 3.3E-34 1.1E-38 274.3 39.0 287 165-462 43-372 (408)
84 2j04_A TAU60, YPL007P, hypothe 100.0 6.2E-36 2.1E-40 283.5 24.0 316 4-444 13-350 (588)
85 3dwl_C Actin-related protein 2 100.0 5.9E-36 2E-40 283.4 24.0 232 168-411 58-377 (377)
86 3dw8_B Serine/threonine-protei 100.0 1.2E-34 4E-39 281.0 32.9 281 162-453 25-444 (447)
87 2aq5_A Coronin-1A; WD40 repeat 100.0 4.4E-35 1.5E-39 279.7 26.5 281 168-458 37-345 (402)
88 2j04_B YDR362CP, TAU91; beta p 100.0 2.5E-35 8.5E-40 287.1 24.1 284 181-478 179-496 (524)
89 4aow_A Guanine nucleotide-bind 100.0 2.9E-33 9.8E-38 260.9 36.9 303 186-506 17-340 (340)
90 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-33 3.6E-38 264.6 33.9 252 204-462 8-344 (351)
91 1yfq_A Cell cycle arrest prote 100.0 1.9E-33 6.4E-38 262.4 35.2 271 165-453 11-322 (342)
92 4gga_A P55CDC, cell division c 100.0 3E-33 1E-37 268.4 37.5 252 168-432 150-414 (420)
93 4h5i_A Guanine nucleotide-exch 100.0 2.4E-34 8.4E-39 269.8 28.8 224 182-413 101-343 (365)
94 4aez_A CDC20, WD repeat-contai 100.0 1.4E-33 4.8E-38 269.0 34.5 240 168-421 137-388 (401)
95 2pm7_B Protein transport prote 100.0 1.9E-33 6.5E-38 256.4 32.5 242 165-412 9-284 (297)
96 3dw8_B Serine/threonine-protei 100.0 2.5E-34 8.7E-39 278.7 27.6 245 207-459 27-377 (447)
97 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-33 5E-38 271.9 31.6 242 170-433 178-433 (435)
98 3gre_A Serine/threonine-protei 100.0 7.7E-35 2.6E-39 281.4 22.5 232 168-410 114-437 (437)
99 4ggc_A P55CDC, cell division c 100.0 2.7E-32 9.3E-37 251.8 36.9 235 168-415 70-317 (318)
100 3bws_A Protein LP49; two-domai 100.0 4.4E-32 1.5E-36 261.8 39.1 275 170-455 127-432 (433)
101 3jrp_A Fusion protein of prote 100.0 7.3E-33 2.5E-37 262.2 32.0 245 207-458 10-290 (379)
102 3bg1_A Protein SEC13 homolog; 100.0 1.2E-33 4.2E-38 260.0 25.5 242 165-412 13-292 (316)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.8E-32 1.6E-36 262.5 37.9 279 167-456 6-392 (450)
104 3mmy_A MRNA export factor; mRN 100.0 2.6E-32 8.9E-37 257.2 35.2 281 165-458 39-349 (368)
105 2xyi_A Probable histone-bindin 100.0 7.3E-33 2.5E-37 266.3 31.3 245 207-456 127-411 (430)
106 3mmy_A MRNA export factor; mRN 100.0 3.6E-33 1.2E-37 263.1 27.9 232 168-410 89-343 (368)
107 1l0q_A Surface layer protein; 100.0 4.6E-31 1.6E-35 251.0 40.9 277 170-458 36-345 (391)
108 1yfq_A Cell cycle arrest prote 100.0 3.6E-32 1.2E-36 253.7 31.1 242 207-463 10-290 (342)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 1.7E-32 5.8E-37 261.8 28.2 239 168-416 84-345 (402)
110 3vu4_A KMHSV2; beta-propeller 100.0 4.5E-31 1.5E-35 246.9 37.0 279 165-460 19-341 (355)
111 1l0q_A Surface layer protein; 100.0 1.4E-30 4.6E-35 247.8 38.3 271 178-463 5-283 (391)
112 3jrp_A Fusion protein of prote 100.0 1.1E-30 3.8E-35 247.2 33.0 246 165-416 11-290 (379)
113 3lrv_A PRE-mRNA-splicing facto 100.0 6.2E-31 2.1E-35 245.2 29.9 224 178-411 88-331 (343)
114 3f3f_A Nucleoporin SEH1; struc 100.0 2.9E-30 1E-34 241.2 34.1 249 165-420 11-344 (351)
115 1nir_A Nitrite reductase; hemo 100.0 7.8E-30 2.7E-34 250.5 37.4 281 171-463 184-522 (543)
116 3jro_A Fusion protein of prote 100.0 1.9E-31 6.5E-36 273.9 26.5 247 203-457 5-287 (753)
117 2j04_A TAU60, YPL007P, hypothe 100.0 8.9E-32 3E-36 255.1 22.1 255 167-454 17-296 (588)
118 3vu4_A KMHSV2; beta-propeller 100.0 6.3E-30 2.2E-34 239.1 34.1 251 189-458 3-274 (355)
119 4gq1_A NUP37; propeller, trans 100.0 3.2E-31 1.1E-35 251.5 25.0 245 178-454 104-388 (393)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.4E-30 1.5E-34 248.7 32.0 258 209-475 5-364 (450)
121 3lrv_A PRE-mRNA-splicing facto 100.0 1.9E-30 6.4E-35 241.9 27.6 255 178-455 51-333 (343)
122 2w18_A PALB2, fancn, partner a 100.0 5.9E-29 2E-33 221.4 31.7 275 168-453 42-355 (356)
123 2xyi_A Probable histone-bindin 100.0 1.3E-29 4.5E-34 243.6 29.2 242 165-414 128-411 (430)
124 3bws_A Protein LP49; two-domai 100.0 6.2E-29 2.1E-33 239.7 34.0 282 186-477 102-412 (433)
125 3jro_A Fusion protein of prote 100.0 1.9E-29 6.4E-34 259.1 28.2 245 165-415 9-287 (753)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.5E-28 1.9E-32 230.5 34.9 237 185-437 159-410 (415)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.2E-28 4E-33 235.2 28.6 297 167-477 64-409 (415)
128 2w18_A PALB2, fancn, partner a 100.0 4E-27 1.4E-31 209.6 29.2 208 168-411 114-355 (356)
129 1k32_A Tricorn protease; prote 100.0 7.5E-28 2.6E-32 256.5 29.2 385 2-479 48-485 (1045)
130 3u4y_A Uncharacterized protein 100.0 1.5E-25 5E-30 207.9 35.1 272 178-458 13-307 (331)
131 2ecf_A Dipeptidyl peptidase IV 100.0 1.4E-26 4.8E-31 238.8 28.9 272 168-456 111-460 (741)
132 1nir_A Nitrite reductase; hemo 100.0 6.9E-25 2.4E-29 215.4 37.7 276 172-459 144-462 (543)
133 4gq1_A NUP37; propeller, trans 100.0 1.3E-26 4.6E-31 219.7 23.5 263 208-478 15-372 (393)
134 1k32_A Tricorn protease; prote 99.9 1.1E-25 3.9E-30 239.7 32.5 368 2-457 199-639 (1045)
135 1xfd_A DIP, dipeptidyl aminope 99.9 2E-25 6.8E-30 229.6 31.1 250 184-443 90-428 (723)
136 2ecf_A Dipeptidyl peptidase IV 99.9 1.7E-25 5.8E-30 230.7 28.3 301 167-479 38-438 (741)
137 1ri6_A Putative isomerase YBHE 99.9 2.8E-24 9.4E-29 200.2 31.5 265 182-454 12-307 (343)
138 3vgz_A Uncharacterized protein 99.9 7E-24 2.4E-28 198.4 34.2 266 168-446 43-335 (353)
139 2z3z_A Dipeptidyl aminopeptida 99.9 6E-25 2.1E-29 225.3 27.5 276 167-457 83-437 (706)
140 2ojh_A Uncharacterized protein 99.9 8.9E-25 3.1E-29 198.9 24.7 252 182-446 19-293 (297)
141 3u4y_A Uncharacterized protein 99.9 3.5E-23 1.2E-27 191.8 34.9 233 171-415 45-306 (331)
142 3vgz_A Uncharacterized protein 99.9 2.1E-23 7.2E-28 195.1 32.5 219 171-398 94-331 (353)
143 1ri6_A Putative isomerase YBHE 99.9 1.5E-23 5.2E-28 195.2 31.3 260 170-436 42-334 (343)
144 1pby_B Quinohemoprotein amine 99.9 7.9E-24 2.7E-28 196.6 29.1 271 178-464 4-319 (337)
145 1xfd_A DIP, dipeptidyl aminope 99.9 1E-24 3.5E-29 224.3 25.1 302 168-479 19-423 (723)
146 2z3z_A Dipeptidyl aminopeptida 99.9 1E-23 3.4E-28 216.2 30.6 273 170-455 125-476 (706)
147 3hfq_A Uncharacterized protein 99.9 2.1E-22 7.1E-27 187.9 30.9 265 184-454 15-316 (347)
148 3scy_A Hypothetical bacterial 99.9 5.8E-21 2E-25 179.1 37.6 264 183-454 25-336 (361)
149 1z68_A Fibroblast activation p 99.9 6.4E-23 2.2E-27 210.6 24.4 279 170-459 64-447 (719)
150 1pby_B Quinohemoprotein amine 99.9 2.8E-22 9.6E-27 186.1 26.2 240 171-425 39-322 (337)
151 2ojh_A Uncharacterized protein 99.9 5.9E-22 2E-26 180.2 26.0 224 228-460 19-263 (297)
152 1jmx_B Amine dehydrogenase; ox 99.9 2.7E-21 9.2E-26 180.5 30.5 279 171-464 5-334 (349)
153 3o4h_A Acylamino-acid-releasin 99.9 9.5E-22 3.2E-26 196.7 24.0 185 210-413 111-315 (582)
154 3pe7_A Oligogalacturonate lyas 99.9 7.1E-21 2.4E-25 180.4 27.6 278 167-455 37-382 (388)
155 3hfq_A Uncharacterized protein 99.9 3.1E-20 1.1E-24 173.1 29.1 245 169-417 43-323 (347)
156 4a5s_A Dipeptidyl peptidase 4 99.9 4.8E-20 1.7E-24 189.2 33.1 281 171-459 67-453 (740)
157 1z68_A Fibroblast activation p 99.9 1.6E-21 5.3E-26 200.3 21.0 272 170-455 20-391 (719)
158 2oit_A Nucleoporin 214KDA; NH2 99.9 8.1E-20 2.8E-24 174.6 28.6 280 166-455 37-405 (434)
159 3o4h_A Acylamino-acid-releasin 99.9 6.9E-21 2.4E-25 190.4 21.9 234 208-453 21-274 (582)
160 1jof_A Carboxy-CIS,CIS-muconat 99.9 9.8E-20 3.3E-24 170.8 27.9 274 178-456 5-342 (365)
161 1jmx_B Amine dehydrogenase; ox 99.9 5.1E-20 1.8E-24 171.7 25.8 227 171-423 48-335 (349)
162 3scy_A Hypothetical bacterial 99.9 2.1E-18 7.2E-23 161.6 32.9 258 169-433 53-360 (361)
163 2oit_A Nucleoporin 214KDA; NH2 99.9 3.1E-20 1.1E-24 177.4 20.6 214 231-457 23-280 (434)
164 4a5s_A Dipeptidyl peptidase 4 99.8 7.4E-19 2.5E-23 180.4 27.4 275 169-460 20-358 (740)
165 1qks_A Cytochrome CD1 nitrite 99.8 4.2E-17 1.4E-21 159.6 37.9 284 171-463 202-546 (567)
166 2oiz_A Aromatic amine dehydrog 99.8 2.8E-18 9.5E-23 160.0 28.3 246 184-437 80-360 (361)
167 3c5m_A Oligogalacturonate lyas 99.8 4.7E-19 1.6E-23 168.3 22.3 274 168-454 38-381 (396)
168 3pe7_A Oligogalacturonate lyas 99.8 5.8E-19 2E-23 167.2 22.6 263 190-460 15-334 (388)
169 3fvz_A Peptidyl-glycine alpha- 99.8 2.9E-17 9.9E-22 151.5 31.3 240 208-456 23-323 (329)
170 1q7f_A NHL, brain tumor CG1071 99.8 2.1E-16 7E-21 142.8 32.5 236 207-458 28-283 (286)
171 2oiz_A Aromatic amine dehydrog 99.8 2.6E-17 8.9E-22 153.4 26.0 263 183-462 29-343 (361)
172 1jof_A Carboxy-CIS,CIS-muconat 99.8 6E-17 2.1E-21 151.8 25.6 239 168-414 42-342 (365)
173 2dg1_A DRP35, lactonase; beta 99.8 3.1E-16 1.1E-20 145.1 30.0 262 168-446 8-301 (333)
174 3azo_A Aminopeptidase; POP fam 99.8 8.2E-17 2.8E-21 163.6 28.2 281 166-458 24-372 (662)
175 2gop_A Trilobed protease; beta 99.7 1.9E-15 6.5E-20 140.6 29.7 239 184-454 42-330 (347)
176 3c5m_A Oligogalacturonate lyas 99.7 4.7E-17 1.6E-21 154.5 18.9 260 189-459 14-333 (396)
177 2xdw_A Prolyl endopeptidase; a 99.7 4E-15 1.4E-19 152.1 31.8 266 186-457 99-416 (710)
178 3azo_A Aminopeptidase; POP fam 99.7 5.3E-16 1.8E-20 157.7 24.5 269 175-455 88-411 (662)
179 3sjl_D Methylamine dehydrogena 99.7 1.4E-14 4.8E-19 132.8 29.8 248 183-435 107-384 (386)
180 3dsm_A Uncharacterized protein 99.7 1.6E-14 5.5E-19 132.8 29.7 275 184-473 16-319 (328)
181 1qks_A Cytochrome CD1 nitrite 99.7 1.4E-13 4.8E-18 134.7 37.6 265 181-456 173-478 (567)
182 2z2n_A Virginiamycin B lyase; 99.7 3.2E-13 1.1E-17 122.6 37.7 269 167-456 16-296 (299)
183 1rwi_B Serine/threonine-protei 99.7 1.1E-14 3.7E-19 130.2 27.1 239 210-459 25-268 (270)
184 3e5z_A Putative gluconolactona 99.7 1.9E-14 6.7E-19 130.5 29.1 231 207-456 26-287 (296)
185 1q7f_A NHL, brain tumor CG1071 99.7 3.6E-14 1.2E-18 128.0 28.5 232 168-415 32-282 (286)
186 3fvz_A Peptidyl-glycine alpha- 99.7 2.6E-14 9E-19 131.6 27.5 234 167-412 25-321 (329)
187 2dg1_A DRP35, lactonase; beta 99.7 1.5E-14 5.3E-19 133.6 25.9 242 208-461 5-268 (333)
188 2gop_A Trilobed protease; beta 99.7 2E-14 7E-19 133.6 24.4 223 208-457 14-293 (347)
189 2bkl_A Prolyl endopeptidase; m 99.7 6.3E-15 2.2E-19 150.2 22.1 262 185-458 94-400 (695)
190 2xdw_A Prolyl endopeptidase; a 99.7 5.1E-14 1.7E-18 143.9 28.3 240 166-415 125-416 (710)
191 3dsm_A Uncharacterized protein 99.7 1.2E-13 4E-18 127.0 27.9 245 170-432 48-319 (328)
192 3sjl_D Methylamine dehydrogena 99.6 3.3E-13 1.1E-17 123.8 29.8 277 184-476 58-384 (386)
193 2bkl_A Prolyl endopeptidase; m 99.6 3.2E-14 1.1E-18 144.9 25.8 180 186-373 203-400 (695)
194 3no2_A Uncharacterized protein 99.6 1.3E-13 4.6E-18 122.8 26.6 209 220-443 5-231 (276)
195 2mad_H Methylamine dehydrogena 99.6 2E-12 6.8E-17 120.4 35.1 231 184-420 96-357 (373)
196 2mad_H Methylamine dehydrogena 99.6 6E-12 2E-16 117.2 36.1 257 186-461 48-356 (373)
197 2qc5_A Streptogramin B lactona 99.6 4.6E-12 1.6E-16 114.9 34.8 268 167-453 21-298 (300)
198 1rwi_B Serine/threonine-protei 99.6 2.1E-13 7.2E-18 121.8 25.3 236 167-416 25-267 (270)
199 3c75_H MADH, methylamine dehyd 99.6 1.1E-12 3.6E-17 122.8 30.0 234 183-420 147-409 (426)
200 3e5z_A Putative gluconolactona 99.6 1.4E-12 4.9E-17 118.1 28.0 228 168-416 30-289 (296)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.1E-12 3.6E-17 120.1 27.3 237 207-455 16-299 (314)
202 3c75_H MADH, methylamine dehyd 99.6 1.8E-12 6.2E-17 121.2 27.0 274 185-475 99-422 (426)
203 1yr2_A Prolyl oligopeptidase; 99.6 1.3E-12 4.3E-17 134.2 28.1 264 186-457 134-443 (741)
204 2z2n_A Virginiamycin B lyase; 99.6 2.1E-11 7.2E-16 110.4 33.2 233 207-453 13-253 (299)
205 3no2_A Uncharacterized protein 99.6 2.1E-12 7E-17 115.1 25.2 233 174-422 3-261 (276)
206 3g4e_A Regucalcin; six bladed 99.5 2.5E-11 8.5E-16 109.8 32.0 226 207-444 11-261 (297)
207 1yr2_A Prolyl oligopeptidase; 99.5 2.6E-12 8.8E-17 131.9 28.3 183 184-372 242-443 (741)
208 3hrp_A Uncharacterized protein 99.5 1.2E-11 4.2E-16 116.8 30.5 231 209-453 131-408 (409)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.5E-11 5.2E-16 112.3 28.3 235 168-413 20-299 (314)
210 2qc5_A Streptogramin B lactona 99.5 2E-10 6.8E-15 104.0 33.6 233 207-453 18-258 (300)
211 3iuj_A Prolyl endopeptidase; h 99.5 2.2E-11 7.6E-16 123.7 29.0 243 207-458 127-408 (693)
212 2ghs_A AGR_C_1268P; regucalcin 99.5 1.3E-10 4.5E-15 106.5 30.6 221 210-445 50-292 (326)
213 1xip_A Nucleoporin NUP159; bet 99.4 3.3E-12 1.1E-16 117.7 17.5 170 253-441 39-230 (388)
214 3dr2_A Exported gluconolactona 99.4 7.8E-11 2.7E-15 107.0 25.8 225 207-447 43-299 (305)
215 3g4e_A Regucalcin; six bladed 99.4 3.1E-10 1E-14 102.6 29.5 220 168-399 15-260 (297)
216 2ece_A 462AA long hypothetical 99.4 4.2E-10 1.4E-14 103.8 29.5 251 186-443 44-399 (462)
217 1xip_A Nucleoporin NUP159; bet 99.4 5.9E-12 2E-16 116.0 17.0 172 167-355 39-232 (388)
218 3hrp_A Uncharacterized protein 99.4 2.2E-10 7.5E-15 108.2 27.2 226 168-411 133-408 (409)
219 1mda_H Methylamine dehydrogena 99.4 1.6E-10 5.5E-15 106.3 23.2 238 184-434 95-366 (368)
220 2ghs_A AGR_C_1268P; regucalcin 99.4 1.5E-09 5.2E-14 99.4 29.5 215 168-398 51-289 (326)
221 1mda_H Methylamine dehydrogena 99.3 1.3E-10 4.4E-15 106.9 21.6 263 186-470 47-361 (368)
222 1kb0_A Quinohemoprotein alcoho 99.3 3.7E-10 1.3E-14 113.6 26.8 279 178-466 80-518 (677)
223 1fwx_A Nitrous oxide reductase 99.3 7.7E-10 2.6E-14 105.8 26.1 275 178-460 18-436 (595)
224 3iuj_A Prolyl endopeptidase; h 99.3 3.5E-10 1.2E-14 114.9 25.6 238 166-416 129-408 (693)
225 1npe_A Nidogen, entactin; glyc 99.3 1.1E-08 3.9E-13 90.7 32.3 243 182-437 7-263 (267)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.4E-09 4.8E-14 102.0 26.8 266 177-463 55-345 (376)
227 3dr2_A Exported gluconolactona 99.3 5.8E-10 2E-14 101.3 23.0 223 168-410 47-303 (305)
228 1yiq_A Quinohemoprotein alcoho 99.3 8.7E-10 3E-14 111.2 26.2 278 178-465 73-515 (689)
229 1npe_A Nidogen, entactin; glyc 99.3 2.3E-08 7.7E-13 88.7 31.6 247 221-478 2-263 (267)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.3 3.1E-09 1.1E-13 99.6 27.0 256 175-452 103-375 (376)
231 2qe8_A Uncharacterized protein 99.3 8E-10 2.7E-14 102.1 21.4 222 168-409 69-317 (343)
232 3hxj_A Pyrrolo-quinoline quino 99.2 6.5E-10 2.2E-14 102.2 20.2 263 169-458 63-327 (330)
233 1fwx_A Nitrous oxide reductase 99.2 7.4E-09 2.5E-13 99.1 27.6 226 183-415 110-433 (595)
234 2qe8_A Uncharacterized protein 99.2 3.5E-09 1.2E-13 97.8 24.1 234 209-451 17-317 (343)
235 1kb0_A Quinohemoprotein alcoho 99.2 5.3E-09 1.8E-13 105.3 26.0 274 176-455 129-567 (677)
236 1yiq_A Quinohemoprotein alcoho 99.2 5.7E-09 1.9E-13 105.3 24.7 255 177-440 123-533 (689)
237 2hz6_A Endoplasmic reticulum t 99.1 2.9E-11 1E-15 112.7 6.0 201 219-437 8-216 (369)
238 3v64_C Agrin; beta propeller, 99.1 5E-07 1.7E-11 83.2 33.9 240 170-422 38-284 (349)
239 3v65_B Low-density lipoprotein 99.1 2.7E-07 9.3E-12 86.3 32.1 249 171-432 82-337 (386)
240 2iwa_A Glutamine cyclotransfer 99.1 4.3E-08 1.5E-12 85.1 23.5 195 167-371 22-238 (266)
241 2ece_A 462AA long hypothetical 99.1 1.3E-08 4.4E-13 94.0 21.2 217 175-398 93-398 (462)
242 2hz6_A Endoplasmic reticulum t 99.1 3.1E-11 1.1E-15 112.5 3.7 188 259-463 7-200 (369)
243 3hxj_A Pyrrolo-quinoline quino 99.1 1.1E-09 3.7E-14 100.7 14.1 258 175-460 29-288 (330)
244 4a2l_A BT_4663, two-component 99.1 2.3E-06 8E-11 88.4 40.2 271 168-457 175-482 (795)
245 2ad6_A Methanol dehydrogenase 99.0 1.7E-07 6E-12 92.2 28.3 278 178-466 65-505 (571)
246 2fp8_A Strictosidine synthase; 99.0 2.7E-07 9.2E-12 84.3 27.9 235 209-456 19-314 (322)
247 2iwa_A Glutamine cyclotransfer 99.0 1.8E-07 6.2E-12 81.2 24.4 192 210-414 22-238 (266)
248 1kv9_A Type II quinohemoprotei 99.0 1.6E-07 5.5E-12 94.4 27.7 278 178-465 69-498 (668)
249 3p5b_L Low density lipoprotein 99.0 4.8E-06 1.6E-10 78.1 34.8 243 176-431 83-338 (400)
250 1w6s_A Methanol dehydrogenase 99.0 4.2E-07 1.4E-11 89.4 28.3 279 178-465 65-513 (599)
251 1ijq_A LDL receptor, low-densi 99.0 4.2E-06 1.4E-10 75.9 32.6 230 178-421 3-246 (316)
252 3nol_A Glutamine cyclotransfer 99.0 2.8E-07 9.7E-12 78.8 22.4 188 242-444 32-244 (262)
253 3nol_A Glutamine cyclotransfer 99.0 1.8E-07 6E-12 80.1 20.8 181 166-356 43-244 (262)
254 3mbr_X Glutamine cyclotransfer 98.9 3.7E-07 1.2E-11 77.5 22.0 182 165-356 20-223 (243)
255 2p4o_A Hypothetical protein; p 98.9 3.6E-06 1.2E-10 76.0 30.4 225 209-446 32-279 (306)
256 3v64_C Agrin; beta propeller, 98.9 6.3E-06 2.2E-10 75.8 32.3 240 211-462 36-282 (349)
257 1flg_A Protein (quinoprotein e 98.9 1E-06 3.5E-11 86.8 28.3 279 178-468 71-529 (582)
258 3nok_A Glutaminyl cyclase; bet 98.9 3.7E-07 1.3E-11 78.1 21.5 185 243-443 45-253 (268)
259 3nok_A Glutaminyl cyclase; bet 98.9 1.7E-07 5.8E-12 80.2 18.7 180 166-356 55-254 (268)
260 3v65_B Low-density lipoprotein 98.9 5E-06 1.7E-10 77.7 29.9 239 213-463 81-326 (386)
261 3sov_A LRP-6, low-density lipo 98.8 8.9E-06 3.1E-10 73.6 29.5 234 178-422 6-247 (318)
262 1kv9_A Type II quinohemoprotei 98.8 6E-07 2.1E-11 90.3 23.7 259 177-443 119-520 (668)
263 3sov_A LRP-6, low-density lipo 98.8 1.8E-05 6.1E-10 71.6 30.2 235 221-463 5-246 (318)
264 1ijq_A LDL receptor, low-densi 98.8 4.2E-05 1.4E-09 69.2 32.8 231 222-462 3-245 (316)
265 4a2l_A BT_4663, two-component 98.8 4.5E-05 1.5E-09 78.8 36.7 273 167-457 216-528 (795)
266 3mbr_X Glutamine cyclotransfer 98.8 4.5E-06 1.5E-10 70.8 23.4 188 242-444 10-223 (243)
267 2ad6_A Methanol dehydrogenase 98.8 2.5E-06 8.4E-11 84.0 25.2 255 177-441 117-523 (571)
268 2xzh_A Clathrin heavy chain 1; 98.7 8.6E-05 2.9E-09 65.0 33.8 275 171-461 31-338 (365)
269 4a0p_A LRP6, LRP-6, low-densit 98.7 6.9E-05 2.4E-09 74.4 34.1 231 176-419 6-243 (628)
270 3m0c_C LDL receptor, low-densi 98.7 3.3E-05 1.1E-09 78.5 31.8 232 177-421 396-640 (791)
271 3qqz_A Putative uncharacterize 98.7 3.6E-05 1.2E-09 66.3 27.6 202 202-411 21-251 (255)
272 2fp8_A Strictosidine synthase; 98.7 2.7E-05 9.3E-10 70.8 28.5 234 170-413 23-313 (322)
273 2p4o_A Hypothetical protein; p 98.7 2.7E-05 9.3E-10 70.3 27.8 220 167-398 33-275 (306)
274 1w6s_A Methanol dehydrogenase 98.7 1.3E-05 4.5E-10 78.9 26.9 253 178-439 124-530 (599)
275 3v9f_A Two-component system se 98.7 7.5E-05 2.6E-09 77.0 33.3 272 167-456 212-525 (781)
276 1bpo_A Protein (clathrin); cla 98.6 0.00026 8.9E-09 64.6 35.5 275 171-461 30-337 (494)
277 1k3i_A Galactose oxidase precu 98.6 4.5E-06 1.5E-10 84.1 22.9 252 186-444 220-530 (656)
278 1flg_A Protein (quinoprotein e 98.6 2.9E-05 1E-09 76.5 28.0 257 176-440 118-544 (582)
279 3p5b_L Low density lipoprotein 98.6 0.0002 6.7E-09 67.1 32.1 234 221-463 84-328 (400)
280 3v9f_A Two-component system se 98.6 0.00028 9.6E-09 72.7 35.5 276 167-458 164-481 (781)
281 3tc9_A Hypothetical hydrolase; 98.5 9.9E-05 3.4E-09 69.9 26.8 233 169-412 140-429 (430)
282 1n7d_A LDL receptor, low-densi 98.5 5E-07 1.7E-11 91.1 11.4 243 178-433 379-634 (699)
283 3tc9_A Hypothetical hydrolase; 98.5 6.7E-05 2.3E-09 71.1 25.2 234 209-454 137-429 (430)
284 2xe4_A Oligopeptidase B; hydro 98.5 2.9E-05 1E-09 79.4 24.0 239 167-416 175-461 (751)
285 2xbg_A YCF48-like protein; pho 98.5 0.00078 2.7E-08 61.2 34.0 268 167-452 37-319 (327)
286 3m0c_C LDL receptor, low-densi 98.4 0.00045 1.5E-08 70.2 31.2 233 221-462 396-639 (791)
287 2xe4_A Oligopeptidase B; hydro 98.4 4.5E-05 1.5E-09 78.0 24.1 240 210-457 175-460 (751)
288 4hw6_A Hypothetical protein, I 98.4 0.0002 7E-09 67.7 26.5 231 169-412 142-432 (433)
289 4hw6_A Hypothetical protein, I 98.4 0.00033 1.1E-08 66.3 27.7 232 210-454 140-432 (433)
290 3kya_A Putative phosphatase; s 98.4 0.00038 1.3E-08 66.0 27.4 243 210-459 140-479 (496)
291 3s94_A LRP-6, low-density lipo 98.4 0.00035 1.2E-08 69.3 28.5 231 178-419 11-249 (619)
292 4a0p_A LRP6, LRP-6, low-densit 98.4 0.003 1E-07 62.7 49.7 118 337-457 389-510 (628)
293 3s94_A LRP-6, low-density lipo 98.3 0.0033 1.1E-07 62.3 41.7 278 169-457 174-512 (619)
294 3qqz_A Putative uncharacterize 98.3 0.0013 4.5E-08 56.6 26.3 200 246-452 21-250 (255)
295 2xbg_A YCF48-like protein; pho 98.3 0.00096 3.3E-08 60.6 26.7 233 166-411 80-320 (327)
296 3amr_A 3-phytase; beta-propell 98.2 0.0017 5.7E-08 58.2 25.7 193 261-463 40-272 (355)
297 3amr_A 3-phytase; beta-propell 98.2 0.001 3.5E-08 59.5 23.3 192 221-421 41-272 (355)
298 3kya_A Putative phosphatase; s 98.1 0.0054 1.8E-07 58.2 28.4 242 169-418 142-480 (496)
299 1k3i_A Galactose oxidase precu 98.1 0.00035 1.2E-08 70.3 20.9 258 187-457 168-499 (656)
300 2ism_A Putative oxidoreductase 98.1 0.0018 6.2E-08 59.4 23.9 227 208-443 30-333 (352)
301 1n7d_A LDL receptor, low-densi 98.1 2.3E-05 7.7E-10 79.1 12.0 227 229-462 384-621 (699)
302 1xi4_A Clathrin heavy chain; a 98.0 0.001 3.5E-08 70.1 22.9 275 170-460 29-336 (1630)
303 2ism_A Putative oxidoreductase 97.8 0.017 5.8E-07 52.9 27.5 221 169-398 34-332 (352)
304 3a9g_A Putative uncharacterize 97.8 0.017 5.9E-07 52.8 26.3 228 208-443 28-330 (354)
305 2p9w_A MAL S 1 allergenic prot 97.8 0.0025 8.6E-08 56.6 19.2 156 293-455 13-215 (334)
306 3ei3_A DNA damage-binding prot 97.8 0.027 9.2E-07 60.0 29.8 267 175-455 706-1062(1158)
307 2g8s_A Glucose/sorbosone dehyd 97.6 0.042 1.4E-06 50.2 26.2 235 210-453 19-350 (353)
308 3sre_A PON1, serum paraoxonase 97.4 0.015 5E-07 52.9 18.6 159 294-455 51-252 (355)
309 3ei3_A DNA damage-binding prot 97.4 0.19 6.6E-06 53.6 35.4 266 179-456 526-874 (1158)
310 3pbp_A Nucleoporin NUP82; beta 97.4 0.024 8.3E-07 51.9 19.2 143 299-451 27-208 (452)
311 3sre_A PON1, serum paraoxonase 97.3 0.085 2.9E-06 47.8 23.9 179 269-452 81-295 (355)
312 3pbp_A Nucleoporin NUP82; beta 97.3 0.068 2.3E-06 49.0 21.0 144 260-409 31-208 (452)
313 3s25_A Hypothetical 7-bladed b 97.3 0.09 3.1E-06 46.7 24.3 212 218-456 23-256 (302)
314 3ii7_A Kelch-like protein 7; p 97.2 0.062 2.1E-06 47.9 20.9 217 184-414 23-273 (306)
315 2p9w_A MAL S 1 allergenic prot 97.2 0.097 3.3E-06 46.5 25.2 199 207-413 11-265 (334)
316 2vpj_A Kelch-like protein 12; 97.2 0.021 7.3E-07 50.9 17.6 216 185-414 31-279 (301)
317 1tl2_A L10, protein (tachylect 97.2 0.065 2.2E-06 44.3 18.2 176 262-456 5-209 (236)
318 2vpj_A Kelch-like protein 12; 97.2 0.031 1.1E-06 49.8 18.3 215 231-457 31-280 (301)
319 2xn4_A Kelch-like protein 2; s 97.1 0.066 2.3E-06 47.6 19.8 216 185-414 30-277 (302)
320 3a9g_A Putative uncharacterize 97.0 0.19 6.5E-06 45.9 28.1 221 169-397 32-328 (354)
321 3ii7_A Kelch-like protein 7; p 97.0 0.091 3.1E-06 46.8 19.7 216 230-457 23-274 (306)
322 2xzh_A Clathrin heavy chain 1; 97.0 0.17 5.8E-06 44.7 27.8 195 174-380 75-300 (365)
323 4asc_A Kelch repeat and BTB do 96.9 0.12 4E-06 46.4 19.2 180 185-372 13-223 (315)
324 2xn4_A Kelch-like protein 2; s 96.7 0.13 4.5E-06 45.6 18.3 215 231-457 30-278 (302)
325 1zgk_A Kelch-like ECH-associat 96.7 0.084 2.9E-06 47.2 16.9 216 185-414 39-288 (308)
326 3s25_A Hypothetical 7-bladed b 96.7 0.32 1.1E-05 43.1 28.8 235 184-452 36-290 (302)
327 2woz_A Kelch repeat and BTB do 96.6 0.38 1.3E-05 43.0 20.7 178 185-372 24-233 (318)
328 1zgk_A Kelch-like ECH-associat 96.5 0.24 8.1E-06 44.1 18.6 227 219-457 24-289 (308)
329 3das_A Putative oxidoreductase 96.5 0.42 1.4E-05 43.1 29.3 230 207-443 30-326 (347)
330 2uvk_A YJHT; unknown function, 96.5 0.05 1.7E-06 49.8 14.1 64 219-282 19-97 (357)
331 3sbq_A Nitrous-oxide reductase 96.5 0.63 2.1E-05 44.3 23.8 232 222-456 71-409 (638)
332 2uvk_A YJHT; unknown function, 96.3 0.41 1.4E-05 43.7 19.3 85 183-270 29-128 (357)
333 1bpo_A Protein (clathrin); cla 96.3 0.67 2.3E-05 42.7 28.9 226 174-413 74-331 (494)
334 3sbq_A Nitrous-oxide reductase 96.3 0.83 2.8E-05 43.5 25.0 250 183-443 151-453 (638)
335 1cru_A Protein (soluble quinop 96.2 0.87 3E-05 43.0 28.8 103 209-312 27-163 (454)
336 2be1_A Serine/threonine-protei 96.2 0.11 3.9E-06 46.6 13.7 103 178-282 13-132 (339)
337 2g8s_A Glucose/sorbosone dehyd 95.9 0.93 3.2E-05 41.2 28.2 223 169-397 21-339 (353)
338 2be1_A Serine/threonine-protei 95.9 0.23 8E-06 44.5 14.8 185 221-418 11-236 (339)
339 1xi4_A Clathrin heavy chain; a 95.7 0.66 2.3E-05 49.6 18.7 222 177-413 78-331 (1630)
340 3ott_A Two-component system se 95.5 2.5 8.6E-05 43.1 33.3 261 167-451 23-303 (758)
341 2woz_A Kelch repeat and BTB do 95.5 1.3 4.4E-05 39.5 19.6 212 232-457 25-289 (318)
342 4asc_A Kelch repeat and BTB do 95.1 1.6 5.6E-05 38.7 20.7 183 263-457 7-223 (315)
343 2zwa_A Leucine carboxyl methyl 95.0 0.9 3.1E-05 45.7 17.0 186 185-373 412-638 (695)
344 3qhy_B Beta-lactamase inhibito 94.9 1.8 6.2E-05 37.8 20.4 227 209-460 24-251 (282)
345 2zwa_A Leucine carboxyl methyl 94.7 2.2 7.6E-05 42.9 19.1 194 218-416 396-638 (695)
346 1tl2_A L10, protein (tachylect 94.6 0.3 1E-05 40.4 10.0 102 337-449 41-157 (236)
347 1cru_A Protein (soluble quinop 94.2 3.7 0.00013 38.7 30.9 100 169-268 30-162 (454)
348 3das_A Putative oxidoreductase 93.7 3.7 0.00013 36.9 27.8 224 169-398 35-325 (347)
349 3ott_A Two-component system se 93.7 6.8 0.00023 39.9 36.1 267 167-454 147-447 (758)
350 3qhy_B Beta-lactamase inhibito 92.4 5.1 0.00017 34.9 22.9 221 168-414 26-247 (282)
351 2wg3_C Hedgehog-interacting pr 92.2 7.8 0.00027 36.5 24.5 241 209-454 14-370 (463)
352 2wg3_C Hedgehog-interacting pr 87.6 13 0.00046 35.0 14.3 107 337-446 14-160 (463)
353 3kci_A Probable E3 ubiquitin-p 86.3 20 0.00068 32.8 19.2 268 178-458 13-348 (389)
354 1suu_A DNA gyrase subunit A; t 81.1 28 0.00097 30.6 21.4 189 260-456 7-232 (312)
355 3kci_A Probable E3 ubiquitin-p 80.3 35 0.0012 31.2 25.7 233 170-412 57-344 (389)
356 3q6k_A 43.2 kDa salivary prote 79.5 36 0.0012 30.9 24.6 188 185-397 123-340 (381)
357 4hvt_A Ritya.17583.B, post-pro 71.2 88 0.003 31.3 24.3 236 211-454 131-429 (711)
358 4gq2_M Nucleoporin NUP120; bet 68.2 78 0.0027 33.1 13.9 38 381-420 236-273 (950)
359 4gq2_M Nucleoporin NUP120; bet 66.6 30 0.001 36.1 10.5 39 209-248 236-274 (950)
360 3zwu_A Alkaline phosphatase PH 64.2 22 0.00074 34.6 8.2 55 170-226 480-548 (592)
361 3mvd_K Regulator of chromosome 63.4 92 0.0032 28.6 30.2 268 174-457 32-376 (423)
362 3no0_A DNA gyrase subunit A; D 63.3 72 0.0025 27.4 18.7 154 209-369 24-195 (276)
363 1zi0_A DNA gyrase subunit A; b 63.2 78 0.0027 27.7 25.9 231 219-456 2-278 (307)
364 3b7f_A Glycosyl hydrolase, BNR 62.7 90 0.0031 28.3 30.7 205 178-397 25-295 (394)
365 3zwu_A Alkaline phosphatase PH 62.7 26 0.00089 34.1 8.4 61 338-398 477-548 (592)
366 4d9s_A UVB-resistance protein 61.3 99 0.0034 28.3 31.4 275 168-456 18-358 (406)
367 4a9v_A PHOX; hydrolase, beta-p 61.2 32 0.0011 33.2 8.5 57 168-226 478-548 (592)
368 4a9v_A PHOX; hydrolase, beta-p 59.5 43 0.0015 32.3 9.1 62 337-398 476-548 (592)
369 4fhn_B Nucleoporin NUP120; pro 58.1 5.6 0.00019 42.6 3.3 39 8-49 239-277 (1139)
370 1suu_A DNA gyrase subunit A; t 56.7 1E+02 0.0035 27.0 25.5 187 218-412 6-230 (312)
371 4fhn_B Nucleoporin NUP120; pro 56.7 39 0.0013 36.2 9.4 38 210-248 239-276 (1139)
372 3f7f_A Nucleoporin NUP120; nuc 56.0 7.9 0.00027 38.4 3.6 38 7-49 222-259 (729)
373 3q6k_A 43.2 kDa salivary prote 53.5 1.3E+02 0.0045 27.3 21.5 147 293-443 152-342 (381)
374 4hvt_A Ritya.17583.B, post-pro 50.8 2E+02 0.007 28.7 25.8 239 167-412 130-429 (711)
375 3no0_A DNA gyrase subunit A; D 47.2 1.4E+02 0.0047 25.6 20.5 187 261-456 35-247 (276)
376 1zi0_A DNA gyrase subunit A; b 47.0 1.5E+02 0.005 25.9 21.5 187 261-455 3-226 (307)
377 1wp5_A Topoisomerase IV; broke 46.3 1.5E+02 0.0053 26.0 20.8 188 261-455 5-225 (323)
378 3uc1_A DNA gyrase subunit A; D 44.3 1.7E+02 0.0057 25.9 23.0 225 178-412 6-278 (327)
379 3f7f_A Nucleoporin NUP120; nuc 42.1 1.7E+02 0.006 29.1 10.4 37 210-249 223-259 (729)
380 3mvd_K Regulator of chromosome 42.0 2.1E+02 0.007 26.2 29.3 108 168-280 77-207 (423)
381 3uc1_A DNA gyrase subunit A; D 35.4 2.3E+02 0.008 24.9 23.9 229 221-457 4-281 (327)
382 1a12_A RCC1, regulator of chro 30.8 3.1E+02 0.011 25.0 27.7 105 168-280 61-192 (413)
383 4d9s_A UVB-resistance protein 28.9 3.3E+02 0.011 24.7 23.9 152 167-322 122-305 (406)
384 3mez_B Mannose-specific lectin 28.3 1.6E+02 0.0055 20.9 9.2 26 296-322 59-84 (113)
385 1wp5_A Topoisomerase IV; broke 25.0 3.5E+02 0.012 23.7 23.2 230 218-455 3-277 (323)
386 1sqj_A OXG-RCBH, oligoxylogluc 24.6 5.6E+02 0.019 25.9 22.0 59 208-268 14-83 (789)
387 3b7f_A Glycosyl hydrolase, BNR 22.5 4.2E+02 0.014 23.7 28.3 255 167-432 56-390 (394)
388 2zux_A YESW protein; beta-prop 21.6 5.5E+02 0.019 24.8 25.6 246 187-459 231-536 (591)
389 1zvt_A Topoisomerase IV subuni 21.1 3.7E+02 0.013 22.6 16.5 146 262-413 3-163 (256)
No 1
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.2e-52 Score=397.53 Aligned_cols=380 Identities=37% Similarity=0.706 Sum_probs=291.5
Q ss_pred cCCccccccccccccccccC---chhHHHHHHhhhhhhcccccccccceeEecCCC-CCcccccccC-------------
Q psy8285 80 RSSYDSLCSHYLLQQANDET---ISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRT-VSPTQFLRTL------------- 142 (507)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------- 142 (507)
+..++++++.+.+.+..... ......+ ++.+...+.+.+....+++.|.+++ ..+.+....+
T Consensus 4 r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (420)
T 4gga_A 4 RSAAQMEVASFLLSKENQPENSQTPTKKEH-QKAWALNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSS 82 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCchhhhhccccccCCcccccCcchHHH-HHHHHhhccccccccceEEeccCCCCCCCcccccCcceecccccCCCCc
Confidence 34566777777776544331 1122333 4455555566565666888887765 2333222211
Q ss_pred CCCCccccCCchhhhcCCCcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCe
Q psy8285 143 GKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTD 222 (507)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 222 (507)
.+..|.++..|++++++|.+.++||++.|+||++++||++.|+.|+|||..+++....+.+.+ |...|++++|+|+|++
T Consensus 83 ~~~~r~i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~-~~~~V~sv~fspdg~~ 161 (420)
T 4gga_A 83 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNY 161 (420)
T ss_dssp ---CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSE
T ss_pred cCCCcccCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecC-CCCcEEEEEECCCCCE
Confidence 255688999999999999999999999999999999999999999999999999998888877 8899999999999999
Q ss_pred EEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC
Q psy8285 223 LAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP 302 (507)
Q Consensus 223 l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 302 (507)
|+++ +.||.|++||+.+++.+..+.+|...+.++++++..|++++.|+.+++||..........+.+|...+..+.++|
T Consensus 162 lasg-s~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 162 LAVG-TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp EEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EEEE-ECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence 9999 999999999999999999999999999999999999999999999999999987766778889999999999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCC-CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDA-KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
+++++++++ |+.+++|+...+.. ...+.....|...|.+++|+|++..++++++++.|++|++||+.++++...+..+
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~ 320 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS
T ss_pred CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc
Confidence 999999999 69999999987632 2345667779999999999999999998887778999999999999999999999
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccc
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 460 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 460 (507)
..+.++.|+|+++.+++++|..|+.|+|||+.+++++.++.+|.+.|++++|+|||++|+||+.|++|+|||+.+..+.+
T Consensus 321 ~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence 99999999999999998767789999999999999999999999999999999999999999999999999998876655
Q ss_pred ce
Q psy8285 461 KA 462 (507)
Q Consensus 461 ~~ 462 (507)
+.
T Consensus 401 ~~ 402 (420)
T 4gga_A 401 RR 402 (420)
T ss_dssp --
T ss_pred hh
Confidence 43
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-48 Score=393.48 Aligned_cols=388 Identities=13% Similarity=0.173 Sum_probs=299.1
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcc--eeeee-cCcccceeeccccccccccCCccC-CceeE
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE--KCHVK-TDSQVTSILWSEQYRESSRSKMVN-TDRYV 77 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~--~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~-~~~~~ 77 (507)
|.||.+.|++++|||||++ ||||+ .|++|+|||+.+++. ..++. |...|.+++|+|+++.+.+..... ....+
T Consensus 55 ~~~h~~~v~~~~~spdg~~-lasg~--~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v 131 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYY-CASGD--VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 131 (611)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEE--TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred ecCCCCceEEEEECCCCcE-EEEEe--CCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence 5799999999999999997 99999 899999999976654 34455 788999999999987655322110 00111
Q ss_pred eecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhh
Q psy8285 78 VDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERIL 157 (507)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (507)
.. |+... +...+
T Consensus 132 ~~----------wd~~~----------------------------------------------------------~~~~l 143 (611)
T 1nr0_A 132 FL----------FDTGT----------------------------------------------------------SNGNL 143 (611)
T ss_dssp EE----------TTTCC----------------------------------------------------------BCBCC
T ss_pred EE----------eeCCC----------------------------------------------------------Cccee
Confidence 11 11000 00000
Q ss_pred cCCCcccccceeeeeeCCCC---EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEE
Q psy8285 158 EAPSIINDFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYID 234 (507)
Q Consensus 158 ~~~~~~~~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~ 234 (507)
..+...|.+++|+|++ +++++.|+.|++||..+++... .+.+ |...|.+++|+|++++|+++ +.|++|+
T Consensus 144 ----~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~--~l~~-H~~~V~~v~fspdg~~las~-s~D~~i~ 215 (611)
T 1nr0_A 144 ----TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS--TFGE-HTKFVHSVRYNPDGSLFAST-GGDGTIV 215 (611)
T ss_dssp ----CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE--EECC-CSSCEEEEEECTTSSEEEEE-ETTSCEE
T ss_pred ----cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee--eecc-ccCceEEEEECCCCCEEEEE-ECCCcEE
Confidence 0122358899999985 6677899999999988776544 4455 99999999999999999999 9999999
Q ss_pred EEeCCCceeEEEEe-------ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC---------------------
Q psy8285 235 LWHEQEERLIQKLR-------THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY--------------------- 284 (507)
Q Consensus 235 iwd~~~~~~~~~~~-------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~--------------------- 284 (507)
+||+.+++.+..+. +|...|.+++| ++++|++++.|++|++||+++++..
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 295 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC
Confidence 99999999888884 79999999999 7899999999999999999875421
Q ss_pred ---------------------ceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeee-cCCCCCeeE
Q psy8285 285 ---------------------PTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNN-QCHLSAVKA 341 (507)
Q Consensus 285 ---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~ 341 (507)
...+.+|...|.+++|+|++++|++++ |+.|++||+.++ .....+ ..|...|.+
T Consensus 296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~---~~~~~~~~~h~~~v~~ 372 (611)
T 1nr0_A 296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG---ISNRVFPDVHATMITG 372 (611)
T ss_dssp CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEECSSCSCSSCEEE
T ss_pred EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC---ceeeecccCCcceEEE
Confidence 123457889999999999999999999 699999999987 444443 568999999
Q ss_pred EEEccCCCcEEEEEccCCCCeEEEEeCCCCCee-----------------------------------------eeeecC
Q psy8285 342 IAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK-----------------------------------------CHVKTD 380 (507)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-----------------------------------------~~~~~~ 380 (507)
++|++++ .+++.+. |+.+++|++..+... ..+...
T Consensus 373 ~~~s~~~-~l~s~s~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~ 448 (611)
T 1nr0_A 373 IKTTSKG-DLFTVSW---DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 448 (611)
T ss_dssp EEECTTS-CEEEEET---TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred EEECCCC-cEEEEEc---CCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC
Confidence 9999876 5655444 999999997653211 111223
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE--EEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC-CC
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL--IEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP-RD 457 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~ 457 (507)
..+.+++|+|+|++|++ |+.|+.|++||+.+++. +.. .+|...|++++|+|||++|++++.|++|++|++.+ .+
T Consensus 449 ~~v~~va~spdg~~las--gs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~ 525 (611)
T 1nr0_A 449 YNSSCVALSNDKQFVAV--GGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525 (611)
T ss_dssp SCEEEEEECTTSCEEEE--EETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred CCceEEEEeCCCCEEEE--eCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc
Confidence 46789999999999999 88999999999987643 334 67999999999999999999999999999999987 44
Q ss_pred cccc--ee-ecCCCcceEEeeccC
Q psy8285 458 KKRK--AR-QVGSGSSLEFAILKQ 478 (507)
Q Consensus 458 ~~~~--~~-~~~~~~~~~~~~~~~ 478 (507)
.... .. +...+.++.|+++..
T Consensus 526 ~~~~~~~~~H~~~V~~v~fspdg~ 549 (611)
T 1nr0_A 526 LAHTNSWTFHTAKVACVSWSPDNV 549 (611)
T ss_dssp ESCCCCCCCCSSCEEEEEECTTSS
T ss_pred eeeeeeeeecccceeEEEECCCCC
Confidence 3332 12 445566777777654
No 3
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.9e-47 Score=351.39 Aligned_cols=313 Identities=41% Similarity=0.763 Sum_probs=286.0
Q ss_pred CCCccccCCchhhhcCCCcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeE
Q psy8285 144 KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDL 223 (507)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 223 (507)
+..|++|..|++++++|.+.+++|+++|+||++++||++.|++|+|||+.+++..+.+...+ |...|++++|+|++++|
T Consensus 4 ~~~r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~-~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 4 KTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNYL 82 (318)
T ss_dssp --CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSEE
T ss_pred CCCcccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecC-CCCeEEEEEECCCCCEE
Confidence 34789999999999999999999999999999999999999999999999999988888877 89999999999999999
Q ss_pred EEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC
Q psy8285 224 AVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN 303 (507)
Q Consensus 224 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 303 (507)
+++ +.||.|++||+.+++.+..+.+|...+.++++++..+++++.++.+.+|+..........+.+|...+..+.++++
T Consensus 83 ~sg-s~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (318)
T 4ggc_A 83 AVG-TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161 (318)
T ss_dssp EEE-ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred EEE-ECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC
Confidence 999 9999999999999999999999999999999999999999999999999999877667788899999999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCC-CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC
Q psy8285 304 GRYLASGS-NNTVKIWDFRQLDA-KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381 (507)
Q Consensus 304 ~~~l~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 381 (507)
++++++++ |+.|++||+++++. .........+.+.|.++.++|++..++..++++.++.|++||..............
T Consensus 162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~ 241 (318)
T 4ggc_A 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 241 (318)
T ss_dssp SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS
T ss_pred CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee
Confidence 99999999 69999999987632 22345556688899999999999888877666679999999999999888888888
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
.+..+.|+|+++.+++++|+.|+.|++||+++++++.++.+|.+.|++++|+|++++|++|+.||+|+|||+.+.++
T Consensus 242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCCC
T ss_pred eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Confidence 99999999999999887677899999999999999999999999999999999999999999999999999987543
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-47 Score=383.90 Aligned_cols=440 Identities=21% Similarity=0.333 Sum_probs=313.8
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|+||++.|+||+|||||++ ||||+ .|++|+||| .+++++.++. |...|.+++|+|+++.+.+.. .|..+.+
T Consensus 12 L~GH~~~V~~~a~spdg~~-las~~--~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~---~d~~i~v- 83 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQT-IASAS--DDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS---DDKTVKL- 83 (577)
T ss_dssp ECCCSSCEEEEEECTTSSC-EEEEE--TTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSCEEE-
T ss_pred ECCCCCcEEEEEECCCCCE-EEEEe--CCCEEEEEE-CCCCEEEEEeCCCCCEEEEEECCCCCEEEEEe---CCCEEEE-
Confidence 7899999999999999997 89988 899999999 4788999988 889999999999998766532 2333333
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhc------ccccccccceeEecCCC----CCccccccc--CCCCCcc
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLL------HGFEIDRKKVLNQSKRT----VSPTQFLRT--LGKLPRK 148 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~ 148 (507)
|++............. .-..+.+.. .+...+..++|...... ......... ..+..+.
T Consensus 84 ---------Wd~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (577)
T 2ymu_A 84 ---------WNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 153 (577)
T ss_dssp ---------EETTSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred ---------EECCCCEEEEEECCCC-CEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCcc
Confidence 2221110000000000 000000000 01111111222211110 000000000 0000000
Q ss_pred c-cCCchh---hhc------CCCcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEE
Q psy8285 149 V-KAKPER---ILE------APSIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAW 216 (507)
Q Consensus 149 ~-~~~~~~---~~~------~~~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~ 216 (507)
+ ...... ... .........+.++.++|++ +++++.|+.|++|+.. ++..... .+ |...|.+++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~--~~-~~~~v~~~~~ 229 (577)
T 2ymu_A 154 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL--TG-HSSSVRGVAF 229 (577)
T ss_dssp EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEE--EC-CSSCEEEEEE
T ss_pred ceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEE--ec-CCCCEEEEEE
Confidence 0 000000 000 0001123347789999987 6777899999999964 4444333 34 8899999999
Q ss_pred ccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCc
Q psy8285 217 KPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDV 294 (507)
Q Consensus 217 ~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (507)
+|++++|+++ +.|+.|++||. +++.+..+.+|...|.+++| +++.|++++.|+.|++||.... ....+.+|...
T Consensus 230 s~dg~~l~~~-~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~--~~~~~~~h~~~ 305 (577)
T 2ymu_A 230 SPDGQTIASA-SDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSS 305 (577)
T ss_dssp CTTSSCEEEE-ETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCSSC
T ss_pred CCCCCEEEEE-eCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--EEEEEecCCCC
Confidence 9999999999 89999999996 46788889999999999999 7899999999999999997642 46677889999
Q ss_pred eEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 295 VCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
|.+++|+|+++++++++ |+.|++||... ..+..+.+|...+.+++|+|++..++ +++. |+.+++||. +++.
T Consensus 306 v~~~~~~~~~~~l~t~~~d~~i~~w~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~--dg~v~~~~~-~~~~ 377 (577)
T 2ymu_A 306 VWGVAFSPDGQTIASASDDKTVKLWNRNG----QHLQTLTGHSSSVWGVAFSPDGQTIA-SASD--DKTVKLWNR-NGQL 377 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTS----CEEEEECCCSSCEEEEEECTTSSEEE-EEET--TSEEEEEET-TCCE
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCC----CeeEEEeCCCCCEEEEEECCCCCEEE-EEeC--CCEEEEEcC-CCCE
Confidence 99999999999999999 69999999875 46777888999999999999996554 4444 999999995 5677
Q ss_pred eeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 374 KCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 374 ~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+..+..+ ..|.+++|+|++++|++ ++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++|+
T Consensus 378 ~~~~~~~~~~v~~~~~s~dg~~l~~--~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 378 LQTLTGHSSSVRGVAFSPDGQTIAS--ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEE--EETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEecCCCCCeEEEEECCCCCEEEE--EeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 7777766 78999999999999999 789999999995 6788889999999999999999999999999999999999
Q ss_pred cCCCCcccceeecCCCcceEEeeccC
Q psy8285 453 CFPRDKKRKARQVGSGSSLEFAILKQ 478 (507)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (507)
+..........+...+..+.|+++..
T Consensus 455 ~~~~~~~~~~~~~~~v~~~~~spd~~ 480 (577)
T 2ymu_A 455 RNGQLLQTLTGHSSSVRGVAFSPDGQ 480 (577)
T ss_dssp TTSCEEEEEECCSSCEEEEEECTTSC
T ss_pred CCCCEEEEEcCCCCCEEEEEEcCCCC
Confidence 75433322233445556667766544
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.4e-47 Score=383.53 Aligned_cols=374 Identities=15% Similarity=0.161 Sum_probs=287.5
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|.||.+.|++++|+|+++++|+||+ .|++|+|||..+++++.++. |...|.+++|+|+++.+.+.
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s~s--~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~------------ 208 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIISGS--DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST------------ 208 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEE--TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE------------
T ss_pred ecCCCCCceEEEECCCCCeEEEEEe--CCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE------------
Confidence 6799999999999999987799998 89999999999999998888 88899999999988765432
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
..|..++.|++.... .+..+.. . ...
T Consensus 209 -s~D~~i~lwd~~~g~---------------------------~~~~~~~---------------------~-----~~~ 234 (611)
T 1nr0_A 209 -GGDGTIVLYNGVDGT---------------------------KTGVFED---------------------D-----SLK 234 (611)
T ss_dssp -ETTSCEEEEETTTCC---------------------------EEEECBC---------------------T-----TSS
T ss_pred -ECCCcEEEEECCCCc---------------------------Eeeeecc---------------------c-----ccc
Confidence 122233333322110 0000000 0 000
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEE-------------------------------------
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLV------------------------------------- 201 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~------------------------------------- 201 (507)
...+...|.+++|+|++ +++++.|+.|++||+.+++....+
T Consensus 235 ~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~ 314 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG 314 (611)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT
T ss_pred ccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC
Confidence 01123357788999887 666778899999998876644322
Q ss_pred ----ecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE-eecCccEEEEEe-eCCEEEEEecCCeEEE
Q psy8285 202 ----EYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL-RTHMHQVIAMCW-NGNLLSCGTIGGNILH 275 (507)
Q Consensus 202 ----~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~-~~~~l~~~~~dg~i~i 275 (507)
.+.+ |...|.+++|+|++++|+++ +.|+.|++||+.+++....+ ..|...|.+++| .+..+++++.|+.+++
T Consensus 315 ~~~~~~~g-h~~~v~~l~~spdg~~l~s~-s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~ 392 (611)
T 1nr0_A 315 SIDQVRYG-HNKAITALSSSADGKTLFSA-DAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 392 (611)
T ss_dssp EEEEEECC-CSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred CcceEEcC-CCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEE
Confidence 2345 88999999999999999999 99999999999998877665 569999999999 5668899999999999
Q ss_pred EECCCCCcCc---------------------------------------eeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 276 YDVRTHSDYP---------------------------------------TAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 276 ~d~~~~~~~~---------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
|++....... .....|...+.+++|+||+++|++|+ |+.|
T Consensus 393 w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v 472 (611)
T 1nr0_A 393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV 472 (611)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred eecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeE
Confidence 9987532110 00012456688999999999999999 6999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-CCeeee--ee-cCCCeEEEEECCC
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-GKEKCH--VK-TDSQVTSILWSEQ 391 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~--~~-~~~~i~~~~~s~~ 391 (507)
++||+..... ..... .+|...|++++|+|+++.+++ ++. |++|++||+.+ ++.... +. +...|.+++|+|+
T Consensus 473 ~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las-~s~--d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspd 547 (611)
T 1nr0_A 473 HVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVA-TDQ--SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD 547 (611)
T ss_dssp EEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEE-EET--TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred EEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEE-EcC--CCCEEEEEcCCCCceeeeeeeeecccceeEEEECCC
Confidence 9999986410 11233 569999999999999965554 444 99999999987 555443 33 3478999999999
Q ss_pred CCeEEEEeccCCCeEEEEeCCCcc-EE-EEeecc-ccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLH-LI-EELKIH-QERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~-~~-~~~~~~-~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
|++|++ ++.|+.|++||+.+++ .+ ..+.+| ...|++++|+|+++ |++++.|++|++|++
T Consensus 548 g~~las--gs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 548 NVRLAT--GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp SSEEEE--EETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred CCEEEE--EECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 999999 8899999999998765 33 567789 89999999999998 999999999999997
No 6
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-46 Score=357.76 Aligned_cols=373 Identities=31% Similarity=0.608 Sum_probs=289.2
Q ss_pred ceeEeecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCccc-------ccccC----
Q psy8285 74 DRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQ-------FLRTL---- 142 (507)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---- 142 (507)
|||+|.+. +++...|.+..... ...| +..++.++.. +. ..|++.|...+..... .....
T Consensus 1 ~~~~~~~~--~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~-~~-~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (401)
T 4aez_A 1 DRFIPSRP--NTANAFVNSISSDV-----PFDY-SESVAEACGF-DL-NTRVLAFKLDAPEAKKPVDLRTQHNRPQRPVV 70 (401)
T ss_dssp ----------------------------------------------C-CEEEEEECSCCCCCCCCCC-------------
T ss_pred CCcCCCch--hhhHHHHhhcCCcc-----hHHH-HHHHHHHcCC-Cc-cCcEEeeCCCCCCCcCcccchhhcccccCCcc
Confidence 57888876 77777777765521 1234 4444444422 21 4588888776521110 00011
Q ss_pred CCCCccccCCchhhhcCCCcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCe
Q psy8285 143 GKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTD 222 (507)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 222 (507)
.+..|.++..|.++++.+...+++++.+++|+++.+++++.|+.|++|++.+++........ |...|.+++|+|++++
T Consensus 71 ~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~ 148 (401)
T 4aez_A 71 TPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETD--ESTYVASVKWSHDGSF 148 (401)
T ss_dssp ----CCCCCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECC--TTCCEEEEEECTTSSE
T ss_pred ccccCcCCCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCCCCE
Confidence 13468889999999999999999999999999988999999999999999999887776654 7889999999999999
Q ss_pred EEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC
Q psy8285 223 LAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP 302 (507)
Q Consensus 223 l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 302 (507)
|+++ +.||.|++||+.+++.+..+..|...|.+++|+++.|++++.||.|++||++........+..|...|.+++|+|
T Consensus 149 l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 227 (401)
T 4aez_A 149 LSVG-LGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227 (401)
T ss_dssp EEEE-ETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EEEE-CCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC
Confidence 9999 899999999999999999999999999999999999999999999999999966656778889999999999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 381 (507)
++++|++++ |+.|++||++++ .....+..|...|.+++|+|++..++++++++.|+.|++||+++++++..+..+.
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~ 304 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSS---IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS 304 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCS---SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS
T ss_pred CCCEEEEEeCCCeEEEccCCCC---CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 999999999 699999999987 7788888899999999999999999999875569999999999999999998888
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEE--EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLI--EELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
.+.+++|+|+++++++++|+.||.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++|++.+++..
T Consensus 305 ~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 999999999999999976668999999999986544 456789999999999999999999999999999999988776
Q ss_pred cce
Q psy8285 460 RKA 462 (507)
Q Consensus 460 ~~~ 462 (507)
...
T Consensus 385 ~~~ 387 (401)
T 4aez_A 385 KRP 387 (401)
T ss_dssp ---
T ss_pred ccc
Confidence 653
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.2e-46 Score=375.71 Aligned_cols=354 Identities=23% Similarity=0.399 Sum_probs=291.2
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
+.+|.+.|++++|+|+|++ |++++ .|+.|++||. +++++..+. +...|.++.|+|+++.+.+..
T Consensus 217 ~~~~~~~v~~~~~s~dg~~-l~~~~--~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~----------- 281 (577)
T 2ymu_A 217 LTGHSSSVRGVAFSPDGQT-IASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASAS----------- 281 (577)
T ss_dssp EECCSSCEEEEEECTTSSC-EEEEE--TTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEE-----------
T ss_pred EecCCCCEEEEEECCCCCE-EEEEe--CCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEe-----------
Confidence 4689999999999999997 88887 7999999995 567777776 788999999998876544321
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
.+..++.|..... ....+.
T Consensus 282 --~d~~i~~w~~~~~---------------------------------------------------------~~~~~~-- 300 (577)
T 2ymu_A 282 --DDKTVKLWNRNGQ---------------------------------------------------------LLQTLT-- 300 (577)
T ss_dssp --TTSCEEEEETTSC---------------------------------------------------------EEEEEC--
T ss_pred --CCCEEEEEeCCCc---------------------------------------------------------EEEEEe--
Confidence 1111122211100 000000
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
.....|.+++|+|++ +++++.|+.|++|+....... .+.+ |...+.+++|+|++++|+++ +.||.|++||.
T Consensus 301 --~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~---~~~~-~~~~v~~~~~s~~g~~l~~~-~~dg~v~~~~~ 373 (577)
T 2ymu_A 301 --GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ---TLTG-HSSSVWGVAFSPDGQTIASA-SDDKTVKLWNR 373 (577)
T ss_dssp --CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE---EECC-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEET
T ss_pred --cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE---EEeC-CCCCEEEEEECCCCCEEEEE-eCCCEEEEEcC
Confidence 012346789999987 666789999999998665433 3344 88999999999999999999 99999999995
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
+++.+..+..|...|.+++| ++++|++++.|+.|++||... .....+..|...|.+++|+|++++|++++ |+.|
T Consensus 374 -~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v 450 (577)
T 2ymu_A 374 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450 (577)
T ss_dssp -TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred -CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence 56888889999999999999 789999999999999999653 24677889999999999999999999999 6999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCe
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRE 394 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~ 394 (507)
++||... +.+..+.+|...|.+++|+|+++.++ +++. |+.|++||. +++++..+..+ ..|++++|+|++++
T Consensus 451 ~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~la-s~~~--d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 451 KLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTIA-SASD--DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp EEEETTS----CEEEEEECCSSCEEEEEECTTSCEEE-EEET--TSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred EEEECCC----CEEEEEcCCCCCEEEEEEcCCCCEEE-EEeC--CCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCE
Confidence 9999754 67788889999999999999996554 4443 999999995 67888888877 78999999999999
Q ss_pred EEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 395 LVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
|++ ++.|+.|++||. +++++..+.+|...|++++|+||+++|++++.|++|++||
T Consensus 523 l~s--~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 523 IAS--ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEE--EETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEE--EECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999 789999999995 6889999999999999999999999999999999999997
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.1e-44 Score=329.14 Aligned_cols=279 Identities=18% Similarity=0.346 Sum_probs=252.4
Q ss_pred cccceeeeeeCCC----C--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEe
Q psy8285 164 NDFYTSGLDWGYH----D--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 164 ~~~~i~~~~~s~~----~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd 237 (507)
+...|.+++|+|+ + +++++.|+.|++|+..+++......+.+ |...|.+++|+|++..++++ +.|+.|++||
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~g-h~~~v~~~~~~~~~~~l~s~-s~D~~i~lWd 108 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG-HQLGVVSVDISHTLPIAASS-SLDAHIRLWD 108 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECSSSSEEEEE-ETTSEEEEEE
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeecc-CCCCEEEEEECCCCCEEEEE-eCCCcEEEEE
Confidence 3456889999874 2 7778899999999998877666667778 99999999999999999999 9999999999
Q ss_pred CCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCc
Q psy8285 238 EQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNT 314 (507)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~ 314 (507)
+.+++.+..+..+...+.+++| ++++|++++.+|.|++|++++++ ....+..+...+.+++|+|++++|++++ |+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~ 187 (321)
T 3ow8_A 109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-KEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187 (321)
T ss_dssp TTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-EEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-eeEEecCCCceEEEEEECCCCCEEEEEcCCCe
Confidence 9999999999999999999999 78999999999999999999876 4566778888999999999999999999 699
Q ss_pred EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCC
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYR 393 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~ 393 (507)
|++||++++ +.+..+.+|..+|.+++|+|++. ++++++. |+.|++||+++++....+..+ ..|.+++|+|+++
T Consensus 188 i~iwd~~~~---~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 261 (321)
T 3ow8_A 188 INIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQ-LLVTASD--DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 261 (321)
T ss_dssp EEEEETTTT---EEEEEECCCSSCCCEEEECTTSC-EEEEECT--TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEEECCCC---cEEEEEcccCCceeEEEEcCCCC-EEEEEcC--CCeEEEEECCCcceeEEEcCCCCceEEEEECCCCC
Confidence 999999987 78888899999999999999985 5555554 999999999999998888877 6799999999999
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
+|++ ++.|+.|++||+.+++++..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 262 ~l~s--~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 262 HFVS--SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEE--EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEE--EeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999 889999999999999999999999999999999999999999999999999996
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.9e-43 Score=326.47 Aligned_cols=275 Identities=22% Similarity=0.349 Sum_probs=246.3
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE- 241 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~- 241 (507)
...|.+++|+|++ +++++.|+.|++||..+++....... |...|.+++|+|++++|+++ +.|+.+++|++.+.
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~-~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYAPSGNYVACG-GLDNICSIYNLKTRE 130 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC---SSSCEEEEEECTTSSEEEEE-ETTCEEEEEETTTCS
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec---CCccEEEEEECCCCCEEEEE-eCCCeEEEEECccCC
Confidence 3458899999987 67778999999999998887665554 88899999999999999999 89999999999865
Q ss_pred ---eeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 242 ---RLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 242 ---~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
+....+.+|...|.++.| ++..+++++.|+.|++||+++++ ....+.+|...|.+++|+|+++++++++ |+.|+
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~ 209 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCc-EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 456678889999999999 56779999999999999999876 5667888999999999999999999999 69999
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCC
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYR 393 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~ 393 (507)
+||++++ .....+.+|...|.+++|+|++..+ ++++. |++|++||+++++.+..+... ..+.+++|+|+++
T Consensus 210 ~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~~~l-~s~s~--d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 210 LWDVREG---MCRQTFTGHESDINAICFFPNGNAF-ATGSD--DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp EEETTTC---SEEEEECCCSSCEEEEEECTTSSEE-EEEET--TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred EEECCCC---eeEEEEcCCcCCEEEEEEcCCCCEE-EEEcC--CCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence 9999987 7888899999999999999998554 45544 999999999999888777654 3699999999999
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+|++ |+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||
T Consensus 284 ~l~~--g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 284 LLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEE--ECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999 88999999999999999999999999999999999999999999999999996
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-43 Score=338.73 Aligned_cols=278 Identities=19% Similarity=0.340 Sum_probs=252.6
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
...|++++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++++|+++ +.|++|++||+.+++
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--~-h~~~V~~v~~~~~~~~l~sg-s~D~~i~iwd~~~~~ 183 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--G-HTDSVQDISFDHSGKLLASC-SADMTIKLWDFQGFE 183 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC--C-CSSCEEEEEECTTSSEEEEE-ETTSCCCEEETTSSC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--c-cCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCc
Confidence 4468999999987 7777899999999999988765544 4 99999999999999999999 999999999999999
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
++..+.+|...|.+++| ++++|++++.|+.|++||++++. ....+.+|...|.++.|+|+++++++++ |+.|++||
T Consensus 184 ~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99999999999999999 68999999999999999999876 5677889999999999999999999999 69999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCC-------------------CcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWE-------------------PTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
++++ .....+..|...|.+++|+|++ ..++++++. |+.|++||+++++++..+..+
T Consensus 263 ~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~--D~~i~iwd~~~~~~~~~~~~h 337 (410)
T 1vyh_C 263 VATK---ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR--DKTIKMWDVSTGMCLMTLVGH 337 (410)
T ss_dssp TTTC---CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET--TSEEEEEETTTTEEEEEEECC
T ss_pred CCCC---ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC--CCeEEEEECCCCceEEEEECC
Confidence 9987 7788888999999999999973 235666665 999999999999999988877
Q ss_pred -CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 381 -SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 381 -~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
..|.+++|+|++++|++ ++.|+.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||+|++|+++
T Consensus 338 ~~~v~~v~~~~~g~~l~s--~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 338 DNWVRGVLFHSGGKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSCEEEEEECSSSSCEEE--EETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCcEEEEEEcCCCCEEEE--EeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 67999999999999999 8899999999999999999999999999999999999999999999999999863
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.1e-44 Score=390.22 Aligned_cols=424 Identities=16% Similarity=0.228 Sum_probs=314.1
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
+.+|.+.|++++|||+|++ |++|+ .|++|+|||+.+++++.++. |...|.+++|+|+++.+.+.. .+..+.+
T Consensus 611 ~~~h~~~v~~~~~s~~~~~-l~s~~--~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~---~d~~v~v- 683 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQR-IASCG--ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS---ADKKVKI- 683 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSEEEE-
T ss_pred EecccccEEEEEECCCCCE-EEEEe--CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEe---CCCeEEE-
Confidence 4689999999999999997 88888 89999999999999999988 889999999999987665432 2233333
Q ss_pred CCcccccccccccccccc--------Cch--hHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCcccc
Q psy8285 81 SSYDSLCSHYLLQQANDE--------TIS--YREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVK 150 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (507)
|++...... .+. .+.. .........+...+..++|......
T Consensus 684 ---------wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~sg~~d~~v~vwd~~~~~------------------ 734 (1249)
T 3sfz_A 684 ---------WDSATGKLVHTYDEHSEQVNCCHFTN--KSNHLLLATGSNDFFLKLWDLNQKE------------------ 734 (1249)
T ss_dssp ---------EETTTCCEEEEEECCSSCEEEEEECS--SSSCCEEEEEETTSCEEEEETTSSS------------------
T ss_pred ---------EECCCCceEEEEcCCCCcEEEEEEec--CCCceEEEEEeCCCeEEEEECCCcc------------------
Confidence 332221100 000 0000 0000001111112233444433211
Q ss_pred CCchhhhcCCCcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCce-------------------------------
Q psy8285 151 AKPERILEAPSIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT------------------------------- 197 (507)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~------------------------------- 197 (507)
....+. .....|.+++|+|++ +++++.|+.|++||+.+++.
T Consensus 735 --~~~~~~----~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 808 (1249)
T 3sfz_A 735 --CRNTMF----GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 808 (1249)
T ss_dssp --EEEEEC----CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred --hhheec----CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence 000000 112235556666655 44455566666666554432
Q ss_pred -----------------------eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccE
Q psy8285 198 -----------------------QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQV 254 (507)
Q Consensus 198 -----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 254 (507)
..... .+ |...|.+++|+|+++.++++ +.+|.|++||+.++..+..+.+|...|
T Consensus 809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~v~~~~~sp~~~~l~~~-~~dg~v~vwd~~~~~~~~~~~~h~~~v 885 (1249)
T 3sfz_A 809 DGDKIIVAAKNKVLLFDIHTSGLLAEIH-TG-HHSTIQYCDFSPYDHLAVIA-LSQYCVELWNIDSRLKVADCRGHLSWV 885 (1249)
T ss_dssp TSSEEEEEETTEEEEEETTTCCEEEEEE-CS-SSSCCCEEEECSSTTEEEEE-CSSSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEEcCCcEEEEEecCCCceeEEc-CC-CCCceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCceeeecCCCccce
Confidence 22221 13 78899999999999999999 999999999999999999999999999
Q ss_pred EEEEe--eCCEEEEEecCCeEEEEECCCC---------------------------------------------------
Q psy8285 255 IAMCW--NGNLLSCGTIGGNILHYDVRTH--------------------------------------------------- 281 (507)
Q Consensus 255 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~--------------------------------------------------- 281 (507)
.+++| +++.|++++.||.|++|++.+.
T Consensus 886 ~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 965 (1249)
T 3sfz_A 886 HGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS 965 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence 99999 6889999999999999985320
Q ss_pred ---------------------------CcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeec
Q psy8285 282 ---------------------------SDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQ 333 (507)
Q Consensus 282 ---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~ 333 (507)
......+.+|...|.+++|+|+++++++++ |+.|++||+.++ . .....
T Consensus 966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~---~-~~~~~ 1041 (1249)
T 3sfz_A 966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG---D-YVFLQ 1041 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTT---E-EECCB
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC---c-eEEEe
Confidence 012233456888899999999999999998 699999999886 3 33456
Q ss_pred CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 334 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 334 ~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
.|...+.++.|+|++ .+++.+. |+.|++||+.+++....+..+ ..+.+++|+|+++++++ ++.|+.|++||+.
T Consensus 1042 ~~~~~v~~~~~~~~~-~l~~~~~---dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s--~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1042 AHQETVKDFRLLQDS-RLLSWSF---DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSS--TSADKTAKIWSFD 1115 (1249)
T ss_dssp CCSSCEEEEEECSSS-EEEEEES---SSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEE--ECCSSCCCEECSS
T ss_pred cCCCcEEEEEEcCCC-cEEEEEC---CCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEE--EcCCCcEEEEECC
Confidence 799999999999976 5555444 999999999999999888876 78999999999999999 8899999999999
Q ss_pred CccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccce----------eecCCCcceEEeeccCcc
Q psy8285 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKA----------RQVGSGSSLEFAILKQPV 480 (507)
Q Consensus 413 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 480 (507)
+++++..+.+|...|++++|+|++++|++++.||.|++||+.+++..... .....+..+.|+++...+
T Consensus 1116 ~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 1193 (1249)
T 3sfz_A 1116 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTL 1193 (1249)
T ss_dssp SSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCE
T ss_pred CcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEE
Confidence 99999999999999999999999999999999999999999988876654 234556777887766543
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1e-43 Score=339.46 Aligned_cols=280 Identities=20% Similarity=0.334 Sum_probs=245.2
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|.||.++|++++|+|++++ |+||+ .|++|+|||+.+++++.++. |...|.
T Consensus 104 l~gh~~~V~~~~~~p~~~~-l~s~s--~Dg~i~vwd~~~~~~~~~l~~h~~~V~-------------------------- 154 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSV-MVSAS--EDATIKVWDYETGDFERTLKGHTDSVQ-------------------------- 154 (410)
T ss_dssp EECCSSCEEEEEECSSSSE-EEEEE--SSSCEEEEETTTCCCCEEECCCSSCEE--------------------------
T ss_pred ecccCCcEEEEEEcCCCCE-EEEEe--CCCeEEEEECCCCcEEEEEeccCCcEE--------------------------
Confidence 5799999999999999986 88888 89999999999998777665 444444
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 155 -------------------------------------------------------------------------------- 154 (410)
T 1vyh_C 155 -------------------------------------------------------------------------------- 154 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
+++|+|++ +++++.|+.|++||+.+++... .+.+ |...|.+++|+|++++|+++ +.|+.|++||+
T Consensus 155 ---------~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~--~~~~-h~~~V~~v~~~p~~~~l~s~-s~D~~i~~wd~ 221 (410)
T 1vyh_C 155 ---------DISFDHSGKLLASCSADMTIKLWDFQGFECIR--TMHG-HDHNVSSVSIMPNGDHIVSA-SRDKTIKMWEV 221 (410)
T ss_dssp ---------EEEECTTSSEEEEEETTSCCCEEETTSSCEEE--CCCC-CSSCEEEEEECSSSSEEEEE-ETTSEEEEEET
T ss_pred ---------EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--EEcC-CCCCEEEEEEeCCCCEEEEE-eCCCeEEEEEC
Confidence 45555554 6677899999999998877544 4455 99999999999999999999 99999999999
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC-------------
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN------------- 303 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~------------- 303 (507)
.+++++..+.+|...|.++.| ++.+|++++.|+.|++||+++.+ ....+..|...|.+++|+|+
T Consensus 222 ~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred CCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-eeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 999999999999999999999 68999999999999999999875 56678889999999999996
Q ss_pred -------CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee
Q psy8285 304 -------GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC 375 (507)
Q Consensus 304 -------~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 375 (507)
+.+|++|+ |+.|++||++++ .++..+.+|...|.+++|+|++..+++.+. |+.|++||+.+++++.
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~---D~~i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVGHDNWVRGVLFHSGGKFILSCAD---DKTLRVWDYKNKRCMK 374 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSSCEEEEET---TTEEEEECCTTSCCCE
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEECCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceEE
Confidence 67899999 699999999988 788889999999999999999976665544 9999999999999999
Q ss_pred eeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 376 HVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 376 ~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
.+..+ ..|++++|+|++++|++ |+.|+.|++|+++
T Consensus 375 ~~~~h~~~v~~l~~~~~~~~l~s--gs~D~~i~vW~~r 410 (410)
T 1vyh_C 375 TLNAHEHFVTSLDFHKTAPYVVT--GSVDQTVKVWECR 410 (410)
T ss_dssp EEECCSSCEEEEEECSSSSCEEE--EETTSEEEEEC--
T ss_pred EEcCCCCcEEEEEEcCCCCEEEE--EeCCCcEEEEeCC
Confidence 88877 68999999999999999 8899999999863
No 13
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-43 Score=335.77 Aligned_cols=273 Identities=15% Similarity=0.218 Sum_probs=240.0
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.|.+++|+|++ +++++.++.|++|+ .+++....+ .+ |...|.+++|+|++++|+++ +.||.|++||+.+++.+
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~--~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL--NF-HRAPIVSVKWNKDGTHIISM-DVENVTILWNVISGTVM 184 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEE--CC-CCSCEEEEEECTTSSEEEEE-ETTCCEEEEETTTTEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeec--cC-CCccEEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEE
Confidence 47789999987 66677999999999 455544443 34 89999999999999999999 89999999999999999
Q ss_pred EEEeecCcc---------------EEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEE
Q psy8285 245 QKLRTHMHQ---------------VIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLA 308 (507)
Q Consensus 245 ~~~~~~~~~---------------v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 308 (507)
..+..+... +.++.| .+..+++++.+|.|++||+++.+ ....+..|...|.+++|+|++++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT-PTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS-CSEEECCCSSCEEEEEEETTTTEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc-eeeeeccCCCceEEEEECCCCCEEE
Confidence 988877776 888888 57789999999999999999875 6667788999999999999999999
Q ss_pred EEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEE
Q psy8285 309 SGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSI 386 (507)
Q Consensus 309 ~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~ 386 (507)
+++ |+.|++||++.+ +....+..|...+.+++|+|++ ++++++. |+.|++||+++++.+..+..+ ..+.++
T Consensus 264 ~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~i~~~ 336 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNG---NSQNCFYGHSQSIVSASWVGDD--KVISCSM--DGSVRLWSLKQNTLLALSIVDGVPIFAG 336 (425)
T ss_dssp EEETTSCEEEECSSSB---SCSEEECCCSSCEEEEEEETTT--EEEEEET--TSEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred EEcCCCEEEEEECCCC---ccceEecCCCccEEEEEECCCC--EEEEEeC--CCcEEEEECCCCcEeEecccCCccEEEE
Confidence 999 699999999987 7778888899999999999998 4444443 999999999999998888875 789999
Q ss_pred EECCCCCeEEEEeccCCCeEEEEeCCCcc--------------------EEEEeecccc--ceeEEEECCCCCEEEEEeC
Q psy8285 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLH--------------------LIEELKIHQE--RILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 387 ~~s~~~~~l~~~~g~~d~~i~v~d~~~~~--------------------~~~~~~~~~~--~i~~~~~s~~~~~l~s~~~ 444 (507)
+|+|++++|++ ++.||.|++||+.+++ ++..+..|.. .|++++|+|++++|++++.
T Consensus 337 ~~s~~~~~l~~--~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 337 RISQDGQKYAV--AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp EECTTSSEEEE--EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred EEcCCCCEEEE--EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence 99999999999 7889999999999888 8899999976 9999999999999999999
Q ss_pred CCcEEEEecC
Q psy8285 445 DETISIWNCF 454 (507)
Q Consensus 445 dg~i~iw~~~ 454 (507)
||.|++|++.
T Consensus 415 dg~i~iw~~~ 424 (425)
T 1r5m_A 415 LQEGSVVAIP 424 (425)
T ss_dssp SSCCEEEECC
T ss_pred CceEEEEeec
Confidence 9999999985
No 14
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.4e-43 Score=325.66 Aligned_cols=240 Identities=18% Similarity=0.244 Sum_probs=202.1
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEE--ecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLV--EYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
.|.+++|+|++ +++++.||.|+|||+.+++..... ...+ |...|++++|+|++++|+++ +.|+.|++||+.+++.
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~-H~~~V~~v~~spdg~~l~sg-s~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYE-HDDIVSTVSVLSSGTQAVSG-SKDICIKVWDLAQQVV 161 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEEC-CSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccC-CCCCEEEEEECCCCCEEEEE-eCCCeEEEEECCCCcE
Confidence 37789999988 778889999999999988755433 3445 99999999999999999999 9999999999999999
Q ss_pred EEEEeecCccEEEEEe--eC-CEEEEEecCCeEEEEECCCCCcCceee--ecCCCceEEEEEcCC-CCEEEEEe-CCcEE
Q psy8285 244 IQKLRTHMHQVIAMCW--NG-NLLSCGTIGGNILHYDVRTHSDYPTAI--TREGDVVCGLKWSPN-GRYLASGS-NNTVK 316 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~-d~~i~ 316 (507)
+..+.+|...|.+++| ++ .+|++++.|+.|++||+++++ ....+ ..+...+.+++|+|+ +++|++|+ |+.|+
T Consensus 162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~ 240 (344)
T 4gqb_B 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS 240 (344)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-eeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence 9999999999999999 34 589999999999999999876 33333 345667999999995 56888888 69999
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEE
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELV 396 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (507)
+||++++ +++..+.+|...|++++|+|++..++++++. |++|++||+++++......+...|++++|+|+++.++
T Consensus 241 ~wd~~~~---~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~--D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 241 LVDTKST---SCVLSSAVHSQCVTGLVFSPHSVPFLASLSE--DCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLL 315 (344)
T ss_dssp EEESCC-----CCEEEECCSSCEEEEEECSSSSCCEEEEET--TSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEE
T ss_pred EEECCCC---cEEEEEcCCCCCEEEEEEccCCCeEEEEEeC--CCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEE
Confidence 9999988 7888999999999999999999778887775 9999999999988766544457899999999998766
Q ss_pred EEeccCCCeEEEEeCCCcc
Q psy8285 397 TSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~~~~ 415 (507)
++ ++.|+.|++|++.+..
T Consensus 316 as-~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 316 TT-VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EE-EETTSCEEEEECCC--
T ss_pred EE-EcCCCeEEEEECCCCC
Confidence 44 7899999999998653
No 15
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-43 Score=364.77 Aligned_cols=386 Identities=12% Similarity=0.077 Sum_probs=275.5
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeeecCcccceeeccccccccccCCccCCceeEeecC
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDRS 81 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 81 (507)
+.||.+.|+||+|+|+|++ ||+|+ .|++|+|||..+++++..+.+...|.+++|++ ++.+.+.
T Consensus 13 ~~gh~~~V~~lafspdg~~-lAsgs--~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~------------- 75 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNL-LAIAT--VTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVI------------- 75 (902)
T ss_dssp EEECSSCEEEEEEETTTTE-EEEEE--TTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEE-------------
T ss_pred ccCCCCCcEEEEECCCCCE-EEEEe--CCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEE-------------
Confidence 3589999999999999986 99998 89999999999988887777888999999998 5433321
Q ss_pred CccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCC
Q psy8285 82 SYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPS 161 (507)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (507)
..|..++.|++... +. ...+.
T Consensus 76 s~D~~v~lWd~~~~----------------------------~~----------------------------~~~~~--- 96 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQ----------------------------KV----------------------------LTTVF--- 96 (902)
T ss_dssp ETTCEEEEEETTTC----------------------------SE----------------------------EEEEE---
T ss_pred ECcCeEEEEECCCC----------------------------cE----------------------------EEEEc---
Confidence 12223333332221 00 00000
Q ss_pred cccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEE---------EecCCCCCCceEEEEEccCC-CeEEEEeCC
Q psy8285 162 IINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLL---------VEYPTYDNAYISCVAWKPRT-TDLAVTNTC 229 (507)
Q Consensus 162 ~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~ 229 (507)
....|.+++|+|++ +++++.|+.|++||+.+++.... ....+ |...|.+++|+|++ ..++++ +.
T Consensus 97 --~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~-h~~~V~sl~~sp~~~~~l~~g-~~ 172 (902)
T 2oaj_A 97 --VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAA-RLSPIVSIQWNPRDIGTVLIS-YE 172 (902)
T ss_dssp --CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSS-CCCCCCEEEEETTEEEEEEEE-CS
T ss_pred --CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccccc-CCCCeEEEEEccCCCCEEEEE-eC
Confidence 11247889999987 66677999999999998875321 22355 88999999999975 577777 99
Q ss_pred CCcEEEEeCCCceeEEEEeec------------------CccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCce-ee
Q psy8285 230 TEYIDLWHEQEERLIQKLRTH------------------MHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPT-AI 288 (507)
Q Consensus 230 dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~ 288 (507)
||.| +||+++++.+..+..| ...|.+++| ++++|++++.||.|++||+++++.... .+
T Consensus 173 dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l 251 (902)
T 2oaj_A 173 YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTV 251 (902)
T ss_dssp SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECS
T ss_pred CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEee
Confidence 9999 9999999998888765 477999999 789999999999999999988652211 11
Q ss_pred ---e-------------cCCCceEEEEEc----CCC-CEEEEEe-C-----CcEEEEEc---------------------
Q psy8285 289 ---T-------------REGDVVCGLKWS----PNG-RYLASGS-N-----NTVKIWDF--------------------- 320 (507)
Q Consensus 289 ---~-------------~~~~~v~~~~~~----~~~-~~l~~~~-d-----~~i~i~d~--------------------- 320 (507)
. .|...|.+++|+ |++ .++++|+ + ..+.+|++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~ 331 (902)
T 2oaj_A 252 FETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANP 331 (902)
T ss_dssp SCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSC
T ss_pred cccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCc
Confidence 1 134578999995 443 4566664 2 15666652
Q ss_pred --------------------------------------------------CCCCCCCC----eeeecCCCCCeeE-----
Q psy8285 321 --------------------------------------------------RQLDAKRP----QVNNQCHLSAVKA----- 341 (507)
Q Consensus 321 --------------------------------------------------~~~~~~~~----~~~~~~~~~~v~~----- 341 (507)
.++..... ...+..|...|++
T Consensus 332 ~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~ 411 (902)
T 2oaj_A 332 KQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS 411 (902)
T ss_dssp SEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE
T ss_pred cceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEE
Confidence 11100000 0001112233444
Q ss_pred -----------------------------EEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee--ee----------ecC
Q psy8285 342 -----------------------------IAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC--HV----------KTD 380 (507)
Q Consensus 342 -----------------------------~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~----------~~~ 380 (507)
++|+|++ .++++++. |++|++||+.+++... .+ .+.
T Consensus 412 ~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~--DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~ 488 (902)
T 2oaj_A 412 VPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHS--NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE 488 (902)
T ss_dssp EEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEET--TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS
T ss_pred cCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEEecC--CCcEEEEECCCccccCCceEEeechhhcCCCCC
Confidence 4456766 56666665 9999999998875321 11 223
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc---------------------------------------------c
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL---------------------------------------------H 415 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~---------------------------------------------~ 415 (507)
..|.+++|+|++++||+ |+.||+|+|||+.++ +
T Consensus 489 ~~V~svafspdg~~LAs--gs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 489 LAVDKISFAAETLELAV--SIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp CCEEEEEEETTTTEEEE--EETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CceeEEEecCCCCeEEE--EecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 68999999999999999 889999999998765 2
Q ss_pred EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccc-----e--eecCCCcceEEe
Q psy8285 416 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRK-----A--RQVGSGSSLEFA 474 (507)
Q Consensus 416 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~-----~--~~~~~~~~~~~~ 474 (507)
++..+.+|.+.|++++||||| +||+|+.|++|++||+.++..+.. . .+...+.+++|+
T Consensus 567 ~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 567 PSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFV 631 (902)
T ss_dssp EEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEE
T ss_pred eeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEE
Confidence 467788899999999999999 999999999999999987655421 1 123346778888
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-42 Score=319.33 Aligned_cols=232 Identities=18% Similarity=0.323 Sum_probs=206.8
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
|.+++|++++ +++++.|+.|++||+.+++....+.. +...+.+++|+|++++|+++ +.+|.|++||+.+++...
T Consensus 83 v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~~g-~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA---GPVDAWTLAFSPDSQYLATG-THVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC---CTTCCCCEEECTTSSEEEEE-CTTSEEEEEETTTCSEEE
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeC---CCccEEEEEECCCCCEEEEE-cCCCcEEEEEcCCCceeE
Confidence 4456777765 66678999999999999887665554 77889999999999999999 999999999999999999
Q ss_pred EEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q psy8285 246 KLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 246 ~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 322 (507)
.+..|...+.+++| ++++|++++.|+.|++||+++++ ....+.+|...|.+++|+|++++|++++ |+.|++||++.
T Consensus 159 ~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~ 237 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237 (321)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999999999 78999999999999999999875 5667888999999999999999999999 69999999998
Q ss_pred CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEecc
Q psy8285 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~ 401 (507)
+ .....+.+|...|.+++|+|++..+++ ++. |++|++||+++++++..+..+ ..|.+++|+|++++|++ ++
T Consensus 238 ~---~~~~~~~~h~~~v~~~~~sp~~~~l~s-~s~--D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s--~~ 309 (321)
T 3ow8_A 238 A---NLAGTLSGHASWVLNVAFCPDDTHFVS-SSS--DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS--VG 309 (321)
T ss_dssp C---CEEEEECCCSSCEEEEEECTTSSEEEE-EET--TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE--EE
T ss_pred c---ceeEEEcCCCCceEEEEECCCCCEEEE-EeC--CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE--Ee
Confidence 7 778888999999999999999965554 443 999999999999999988766 78999999999999999 78
Q ss_pred CCCeEEEEeCC
Q psy8285 402 QDCSLKMWEYP 412 (507)
Q Consensus 402 ~d~~i~v~d~~ 412 (507)
.|+.|++||.+
T Consensus 310 ~d~~i~vwd~p 320 (321)
T 3ow8_A 310 DDQEIHIYDCP 320 (321)
T ss_dssp TTCCEEEEECC
T ss_pred CCCeEEEEeCC
Confidence 99999999964
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.8e-43 Score=328.18 Aligned_cols=241 Identities=14% Similarity=0.219 Sum_probs=199.4
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEE--EecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLL--VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
|.+++|+|++ +++++.|+.|++||+.+++.... ....+ |...|++++|+|++++|+++ +.|+.|++||+.+++.+
T Consensus 97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~l~sg-s~dg~v~iwd~~~~~~~ 174 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSG-GKDFSVKVWDLSQKAVL 174 (357)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECC-CSSCEEEEEECSSSSEEEEE-ETTSCEEEEETTTTEEE
T ss_pred EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCC-CCCCEEEEEECCCCCEEEEE-eCCCeEEEEECCCCcEE
Confidence 6678999987 88889999999999988765432 23345 89999999999999999999 99999999999999999
Q ss_pred EEEeecCccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCce-eeecCCCceEEEEEcCCC-CEEEEEe-CCcEEEE
Q psy8285 245 QKLRTHMHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPT-AITREGDVVCGLKWSPNG-RYLASGS-NNTVKIW 318 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~ 318 (507)
..+.+|...|.+++| + ..++++++.|+.|++||+++++.... ....+...+.+++|+|++ .+|++|+ |+.|++|
T Consensus 175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w 254 (357)
T 4g56_B 175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV 254 (357)
T ss_dssp EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence 999999999999999 3 35899999999999999998763322 234567789999999974 6788888 6999999
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECC-CCCeEEE
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSE-QYRELVT 397 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~ 397 (507)
|++++ +.+..+.+|...|++++|+|++..++++++. |++|++||+++++++..+.+...|++++|+| ++++|++
T Consensus 255 d~~~~---~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~--D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 255 NIKNP---DSAQTSAVHSQNITGLAYSYHSSPFLASISE--DCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp ESSCG---GGCEEECCCSSCEEEEEECSSSSCCEEEEET--TSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred ECCCC---cEeEEEeccceeEEEEEEcCCCCCEEEEEeC--CCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEE
Confidence 99987 7888889999999999999999888887775 9999999999999888877668999999998 7888888
Q ss_pred EeccCCCeEEEEeCCCccEE
Q psy8285 398 SHGKQDCSLKMWEYPRLHLI 417 (507)
Q Consensus 398 ~~g~~d~~i~v~d~~~~~~~ 417 (507)
++.|+.|++|++.+....
T Consensus 330 --~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 330 --VGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp --EETTSCEEEEECC-----
T ss_pred --EcCCCeEEEEECCCCCcc
Confidence 789999999999764433
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.2e-42 Score=320.97 Aligned_cols=278 Identities=17% Similarity=0.198 Sum_probs=227.7
Q ss_pred cceeeeeeCCCC-EEEEEcCCeEEEEECCC------------CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCc
Q psy8285 166 FYTSGLDWGYHD-TLAVALDTSVYTWNTKT------------NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEY 232 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~ 232 (507)
..|.+++|+||| +++++.|+.+++||... +....... +...|.+++|+|++ .|+++ +.||.
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~d~-~l~~~-s~dg~ 104 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQ----TEAGVADLTWVGER-GILVA-SDSGA 104 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEE----ESSCEEEEEEETTT-EEEEE-ETTSE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeec----cCCCEEEEEEeCCC-eEEEE-ECCCE
Confidence 358899999999 77777788888886321 01111111 56789999999985 67777 89999
Q ss_pred EEEEeCCCceeEEE----EeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC-
Q psy8285 233 IDLWHEQEERLIQK----LRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR- 305 (507)
Q Consensus 233 i~iwd~~~~~~~~~----~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 305 (507)
|+|||+.+++.+.. ..+|...|.+++| ++++|++|+.|++|++||+++++ ....+.+|...|.+++|+|++.
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-VLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECSSCTT
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCcCCceEEEEecCCCCC
Confidence 99999998865443 4479999999999 79999999999999999999876 6778889999999999999885
Q ss_pred EEEEEe-CCcEEEEEcCCCCCCCCeeeec--CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-C
Q psy8285 306 YLASGS-NNTVKIWDFRQLDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-S 381 (507)
Q Consensus 306 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~ 381 (507)
+|++++ |++|++||++++ ++...+. .+...+.+++|+|++..++++++. |+.|++||+++++++..+..+ .
T Consensus 184 ~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~--dg~v~~wd~~~~~~~~~~~~h~~ 258 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCP---KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE--NGTVSLVDTKSTSCVLSSAVHSQ 258 (344)
T ss_dssp EEEEEETTSCEEEEETTSS---SCEEECC----CCCEEEEEECSSCTTEEEEEET--TSEEEEEESCC--CCEEEECCSS
T ss_pred ceeeecccccccccccccc---ceeeeeecceeeccceeeeecCCCCcceEEecc--CCcEEEEECCCCcEEEEEcCCCC
Confidence 788888 699999999987 5665553 356679999999988888888875 999999999999999999877 6
Q ss_pred CeEEEEECCCCC-eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEEecCCCCc
Q psy8285 382 QVTSILWSEQYR-ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT-CVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 382 ~i~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~ 458 (507)
.|++++|+|++. +|++ |+.|+.|+|||+.+++.+ .+.+|.+.|++++|+|+++ +|++++.|++|++|++.+...
T Consensus 259 ~v~~v~fsp~g~~~las--gs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 259 CVTGLVFSPHSVPFLAS--LSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp CEEEEEECSSSSCCEEE--EETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred CEEEEEEccCCCeEEEE--EeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 899999999985 6777 889999999999988755 5788999999999999986 567899999999999986543
No 19
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.5e-42 Score=319.37 Aligned_cols=279 Identities=18% Similarity=0.323 Sum_probs=236.4
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|+||.+.|++++|+||+++ |+||+ .|++|+|||+.+++++..+. +...
T Consensus 51 l~gH~~~v~~~~~s~d~~~-l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~~~---------------------------- 99 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRL-LLSAS--QDGKLIIWDSYTTNKVHAIPLRSSW---------------------------- 99 (340)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEE--TTTEEEEEETTTCCEEEEEECSSSC----------------------------
T ss_pred ecCCCCceEEEEECCCCCE-EEEEe--CCCcEEEEECCCCCcceEeecCCcc----------------------------
Confidence 6799999999999999987 88888 89999999999988766554 2222
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 100 -------------------------------------------------------------------------------- 99 (340)
T 1got_B 100 -------------------------------------------------------------------------------- 99 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCce--eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEE
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT--QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLW 236 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iw 236 (507)
|.+++|+|++ +++++.|+.|++|++.+++. .....+.+ |...|.++.|++++. ++++ +.|+.|++|
T Consensus 100 -------v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~-l~s~-s~d~~i~~w 169 (340)
T 1got_B 100 -------VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDNQ-IVTS-SGDTTCALW 169 (340)
T ss_dssp -------EEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEEC-CSSCEEEEEEEETTE-EEEE-ETTSCEEEE
T ss_pred -------EEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecC-CCccEEEEEECCCCc-EEEE-ECCCcEEEE
Confidence 3346666665 66678999999999987542 33344556 999999999998875 7777 899999999
Q ss_pred eCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CC
Q psy8285 237 HEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NN 313 (507)
Q Consensus 237 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~ 313 (507)
|+.+++.+..+.+|...|.+++| ++++|++++.|+.|++||++++. ....+.+|...|.+++|+|++++|++++ |+
T Consensus 170 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~ 248 (340)
T 1got_B 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence 99999999999999999999999 68899999999999999999875 5667888999999999999999999999 69
Q ss_pred cEEEEEcCCCCCCCCeeeec--CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECC
Q psy8285 314 TVKIWDFRQLDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSE 390 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~ 390 (507)
.|++||++.+ +.+..+. .+...|.+++|+|++..++ +++. |+.|++||+.+++.+..+..+ ..|.+++|+|
T Consensus 249 ~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~--d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~ 322 (340)
T 1got_B 249 TCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRLLL-AGYD--DFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322 (340)
T ss_dssp CEEEEETTTT---EEEEEECCTTCCSCEEEEEECTTSSEEE-EEET--TSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred cEEEEECCCC---cEEEEEccCCcccceEEEEECCCCCEEE-EECC--CCeEEEEEcccCcEeeEeecCCCcEEEEEEcC
Confidence 9999999876 4454443 2335799999999996554 4444 999999999999998888877 7899999999
Q ss_pred CCCeEEEEeccCCCeEEEEe
Q psy8285 391 QYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d 410 (507)
++++|++ |+.|+.|++||
T Consensus 323 dg~~l~s--~s~D~~i~iWd 340 (340)
T 1got_B 323 DGMAVAT--GSWDSFLKIWN 340 (340)
T ss_dssp TSSCEEE--EETTSCEEEEC
T ss_pred CCCEEEE--EcCCccEEecC
Confidence 9999999 88999999997
No 20
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.8e-41 Score=315.95 Aligned_cols=275 Identities=20% Similarity=0.319 Sum_probs=244.2
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE- 241 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~- 241 (507)
...|.+++|+|++ +++++.|+.|++||..+++....... |...|.+++|+|++..++++ +.|+.+++|++...
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~---~~~~v~~~~~sp~g~~lasg-~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM---PCTWVMACAYAPSGCAIACG-GLDNKCSVYPLTFDK 139 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSSCCCEEEECTTSSEEEEE-STTSEEEEEECCCCT
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec---CCCCEEEEEECCCCCEEEEe-eCCCCEEEEEEeccc
Confidence 3458999999987 77788999999999998887666655 77889999999999999999 99999999998643
Q ss_pred -----eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC--CCCEEEEEe-
Q psy8285 242 -----RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP--NGRYLASGS- 311 (507)
Q Consensus 242 -----~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~- 311 (507)
.....+..|...|.+++| ++..|++++.|++|++||+++++ ....+.+|...|.+++|+| ++++|++++
T Consensus 140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence 345677789999999999 67899999999999999999876 5677889999999999987 568999999
Q ss_pred CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEE
Q psy8285 312 NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILW 388 (507)
Q Consensus 312 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~ 388 (507)
|+.|++||++++ +++..+..|...|.+++|+|++. ++++++. |++|++||++.++.+..+..+ ..+.+++|
T Consensus 219 Dg~v~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~--D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 219 DKKAMVWDMRSG---QCVQAFETHESDVNSVRYYPSGD-AFASGSD--DATCRLYDLRADREVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp TSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEET--TSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred CCeEEEEECCCC---cEEEEecCCCCCeEEEEEeCCCC-EEEEEeC--CCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence 799999999988 78888899999999999999985 4555554 999999999998877766544 36899999
Q ss_pred CCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 389 SEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 389 s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+|++++|++ |+.|+.|++||+.+++.+..+.+|...|++++|+|++++|++++.|+.|++|+
T Consensus 293 s~~g~~l~~--g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 293 SLSGRLLFA--GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSEEEE--EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eCCCCEEEE--EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999 88999999999999999999999999999999999999999999999999996
No 21
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-41 Score=344.22 Aligned_cols=390 Identities=13% Similarity=0.127 Sum_probs=289.8
Q ss_pred Ccccccc-eeeeeecc--CcceeeeccccccccceeeecccCC--------cceeeee-cCcccceeeccccccccccCC
Q psy8285 2 NQCHLSA-VKAIAWCP--WEPTLLATGGGICDQTVRLWNSMNG--------KEKCHVK-TDSQVTSILWSEQYRESSRSK 69 (507)
Q Consensus 2 l~gH~~~-V~~l~fsp--~g~~llasg~~~~d~~i~iWd~~~g--------~~~~~~~-~~~~v~~~~~s~~~~~~~~~~ 69 (507)
|.+|.+. |++++|+| ++++ |++|+ .|++|+|||+.++ +++..+. +...|.+++|+|+++.+....
T Consensus 59 ~~~h~~~~v~~~~~sp~~~~~~-l~s~~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 135 (615)
T 1pgu_A 59 FTGHGSSVVTTVKFSPIKGSQY-LCSGD--ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135 (615)
T ss_dssp ECTTTTSCEEEEEECSSTTCCE-EEEEE--TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EecCCCceEEEEEECcCCCCCE-EEEec--CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec
Confidence 5789999 99999999 9987 88888 8999999999865 6666676 788999999999887654322
Q ss_pred ccCCceeEeecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccc
Q psy8285 70 MVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKV 149 (507)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (507)
... +. .. .++.++..
T Consensus 136 ~~~-~~--------~~--------------------------------------~v~~~d~~------------------ 150 (615)
T 1pgu_A 136 EGR-DN--------FG--------------------------------------VFISWDSG------------------ 150 (615)
T ss_dssp CCS-SC--------SE--------------------------------------EEEETTTC------------------
T ss_pred cCC-CC--------cc--------------------------------------EEEEEECC------------------
Confidence 110 00 00 11111100
Q ss_pred cCCchhhhcCCCcccccceeeeeeCCCC---EEEEEcCCeEEEEECCCCceeEEEecCCCCCC---ceEEEEEccC-CCe
Q psy8285 150 KAKPERILEAPSIINDFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA---YISCVAWKPR-TTD 222 (507)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~ 222 (507)
.+...+. .....|.+++|+|++ +++++.|+.|++||..+++....+. + |.. .|.+++|+|+ +++
T Consensus 151 --~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--~-~~~~~~~v~~~~~~~~~~~~ 221 (615)
T 1pgu_A 151 --NSLGEVS----GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR--T-HHKQGSFVRDVEFSPDSGEF 221 (615)
T ss_dssp --CEEEECC----SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC--S-SSCTTCCEEEEEECSTTCCE
T ss_pred --Ccceeee----cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec--c-cCCCCceEEEEEECCCCCCE
Confidence 0000000 123357889999986 6667799999999998887655544 4 777 8999999999 999
Q ss_pred EEEEeCCCCcEEEEeCCCceeEEEE-e---ecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecC----CC
Q psy8285 223 LAVTNTCTEYIDLWHEQEERLIQKL-R---THMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE----GD 293 (507)
Q Consensus 223 l~~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~ 293 (507)
|+++ +.||.|++||+.+++.+..+ . .|...|.+++| ++++|++++.|+.|++||+++.+ ....+..+ ..
T Consensus 222 l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 222 VITV-GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGN 299 (615)
T ss_dssp EEEE-ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE-EEEEEECCTTCGGG
T ss_pred EEEE-eCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCc-EEEEEcCCCCcccC
Confidence 9998 89999999999999999998 6 89999999999 89999999999999999999865 44445544 36
Q ss_pred ceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC-------------------------
Q psy8285 294 VVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW------------------------- 347 (507)
Q Consensus 294 ~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------- 347 (507)
.+.++.|. +++++++++ |+.|++||++.+ +.+..+.+|...|.+++| |+
T Consensus 300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~---~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~ 374 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHD---EVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNL 374 (615)
T ss_dssp CEEEEEEE-ETTEEEEEETTSCEEEEETTEE---EEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSC
T ss_pred ceeEEEeC-CCCeEEEEECCCCEEEEECCCC---cEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCc
Confidence 77888886 888999988 699999999875 455555555444444444 32
Q ss_pred --------CCcEEEEEc---------------------------------------------------------------
Q psy8285 348 --------EPTLLATGG--------------------------------------------------------------- 356 (507)
Q Consensus 348 --------~~~~~~~~~--------------------------------------------------------------- 356 (507)
+..+++.+.
T Consensus 375 v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (615)
T 1pgu_A 375 IVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL 454 (615)
T ss_dssp EEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred eEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEE
Confidence 333333222
Q ss_pred -------cCC-CCeEEEEeCCCCCee-eeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec-ccc
Q psy8285 357 -------GIC-DQTVRLWNSMNGKEK-CHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI-HQE 425 (507)
Q Consensus 357 -------~~~-d~~i~i~d~~~~~~~-~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~-~~~ 425 (507)
+.. |+.|++||+.+++.. ..+..+ ..+.+++|+|++++|++ ++.|+.|++||+.+++++..+.+ |..
T Consensus 455 ~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~h~~ 532 (615)
T 1pgu_A 455 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA--GDVMGKILLYDLQSREVKTSRWAFRTS 532 (615)
T ss_dssp CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEECCSCCCSS
T ss_pred cCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEE--cCCCCeEEEeeCCCCcceeEeecCCCC
Confidence 001 344444444443332 223333 67999999999999999 88999999999999999999988 999
Q ss_pred ceeEEEECC----------CCCEEEEEeCCCcEEEEecCCC-Cccccee-ecCCCcceEEeecc
Q psy8285 426 RILSAVLSP----------DQTCVAAASADETISIWNCFPR-DKKRKAR-QVGSGSSLEFAILK 477 (507)
Q Consensus 426 ~i~~~~~s~----------~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 477 (507)
.|++++|+| ++++|++++.||.|++|++.++ +....+. +...+..+.|.++.
T Consensus 533 ~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 596 (615)
T 1pgu_A 533 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS 596 (615)
T ss_dssp CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT
T ss_pred ceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC
Confidence 999999999 9999999999999999999987 4444332 34556667777654
No 22
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-43 Score=337.10 Aligned_cols=279 Identities=15% Similarity=0.268 Sum_probs=227.2
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCC--ceeEEEecCCCCCCceEEEEEccC-CCeEEEEeCCCCcEEEEeCCCce
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTN--KTQLLVEYPTYDNAYISCVAWKPR-TTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
|.+++|+|++ +++++.|+.|++|++.+. .......+.+ |...|.+++|+|+ +.+|+++ +.||.|++||+.+++
T Consensus 70 v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~ 147 (416)
T 2pm9_A 70 FNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN-HSSSVKTVKFNAKQDNVLASG-GNNGEIFIWDMNKCT 147 (416)
T ss_dssp EEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC-SSSCCCEEEECSSSTTBEEEE-CSSSCEEBCBTTTTS
T ss_pred eEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccC-CccceEEEEEcCCCCCEEEEE-cCCCeEEEEECCCCc
Confidence 5567888876 666678999999999872 1123445555 9999999999998 7888888 999999999999876
Q ss_pred ------eEE---EEeecCccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecC------CCceEEEEEcCCC
Q psy8285 243 ------LIQ---KLRTHMHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITRE------GDVVCGLKWSPNG 304 (507)
Q Consensus 243 ------~~~---~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~ 304 (507)
... ....|...|.+++| + +.+|++++.|+.|++||+++.+ ....+..+ ...+.+++|+|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-EVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp SCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-EEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred cccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-cceEEeccccccccCCceEEEEECCCC
Confidence 332 23578999999999 4 6799999999999999999875 34445444 7889999999997
Q ss_pred -CEEEEEe-CC---cEEEEEcCCCCCCCCeeeec-CCCCCeeEEEEcc-CCCcEEEEEccCCCCeEEEEeCCCCCeeeee
Q psy8285 305 -RYLASGS-NN---TVKIWDFRQLDAKRPQVNNQ-CHLSAVKAIAWCP-WEPTLLATGGGICDQTVRLWNSMNGKEKCHV 377 (507)
Q Consensus 305 -~~l~~~~-d~---~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 377 (507)
.++++++ |+ .|++||++.+. .+...+. +|...|.+++|+| ++. ++++++. |+.|++||+++++++..+
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~--dg~v~~wd~~~~~~~~~~ 301 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNAN--TPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGR--DNTVLLWNPESAEQLSQF 301 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTT--SCSBCCCSCCSSCEEEEEECSSCSS-CEEEEES--SSEEEEECSSSCCEEEEE
T ss_pred CCEEEEEECCCCCceEEEEeCCCCC--CCcEEeecCccCceeEEEeCCCCCC-eEEEEeC--CCCEEEeeCCCCccceee
Confidence 6888888 47 99999999752 4556666 7999999999999 664 5555544 999999999999999988
Q ss_pred ecC-CCeEEEEECCCC-CeEEEEeccCCCeEEEEeCCCccEEEEeec---------------------------------
Q psy8285 378 KTD-SQVTSILWSEQY-RELVTSHGKQDCSLKMWEYPRLHLIEELKI--------------------------------- 422 (507)
Q Consensus 378 ~~~-~~i~~~~~s~~~-~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--------------------------------- 422 (507)
..+ ..+.+++|+|++ .+|++ ++.|+.|++||+.+.+.......
T Consensus 302 ~~~~~~v~~~~~s~~~~~~l~s--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (416)
T 2pm9_A 302 PARGNWCFKTKFAPEAPDLFAC--ASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAP 379 (416)
T ss_dssp ECSSSCCCCEEECTTCTTEEEE--CCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCC
T ss_pred cCCCCceEEEEECCCCCCEEEE--EecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCC
Confidence 876 689999999999 78888 88999999999987654322211
Q ss_pred --cccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 423 --HQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 423 --~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
|..++.+++|+|+|++|++++.|+.|+||++.++
T Consensus 380 ~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 380 TWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp STTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 5677889999999999999999999999999864
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-41 Score=310.30 Aligned_cols=281 Identities=20% Similarity=0.296 Sum_probs=235.6
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|++|.+.|++|+|+|+|++ |++|+ .|++|+|||+.+++++..+. +...|.++.|+
T Consensus 9 ~~~h~~~V~~~~fsp~~~~-l~s~~--~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~--------------------- 64 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPW-VLTTL--YSGRVELWNYETQVEVRSIQVTETPVRAGKFI--------------------- 64 (304)
T ss_dssp EEEECSCEEEEEECSSSSE-EEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---------------------
T ss_pred ecCCCCceEEEEECCCCCE-EEEEc--CCCcEEEEECCCCceeEEeeccCCcEEEEEEe---------------------
Confidence 6799999999999999997 88888 79999999999998877665 44444444443
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 65 -------------------------------------------------------------------------------- 64 (304)
T 2ynn_A 65 -------------------------------------------------------------------------------- 64 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++++|+++ +.|++|++||+
T Consensus 65 --------------~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~l~sg-s~D~~v~lWd~ 126 (304)
T 2ynn_A 65 --------------ARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--A-HPDYIRSIAVHPTKPYVLSG-SDDLTVKLWNW 126 (304)
T ss_dssp --------------GGGTEEEEEETTSEEEEEETTTCCEEEEEE--C-CSSCEEEEEECSSSSEEEEE-ETTSCEEEEEG
T ss_pred --------------CCCCEEEEECCCCEEEEEECCCCcEEEEEe--C-CCCcEEEEEEcCCCCEEEEE-CCCCeEEEEEC
Confidence 433 6778899999999999988765544 4 99999999999999999999 99999999999
Q ss_pred CCc-eeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC--CCCEEEEEe-
Q psy8285 239 QEE-RLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP--NGRYLASGS- 311 (507)
Q Consensus 239 ~~~-~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~- 311 (507)
.++ .....+.+|...|.+++| ++..|++++.|+.|++||++...........+...+..+.|+| ++++|++++
T Consensus 127 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 206 (304)
T 2ynn_A 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (304)
T ss_dssp GGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred CCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence 887 556778899999999999 4679999999999999999887644444556778899999987 778999999
Q ss_pred CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECC
Q psy8285 312 NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSE 390 (507)
Q Consensus 312 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~ 390 (507)
|+.|++||++++ +++..+.+|...|.+++|+|+++ ++++++. |++|++||+++++.+..+..+ ..+.+++|+|
T Consensus 207 D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~--Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 207 DLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPTLP-IIISGSE--DGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp TSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSS-EEEEEET--TSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred CCeEEEEeCCCC---ccceeeCCCCCCEEEEEECCCCC-EEEEEcC--CCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 699999999987 78889999999999999999985 5555554 999999999999999998876 6899999999
Q ss_pred CCC--eEEEEeccCCCeEEEEeCCC
Q psy8285 391 QYR--ELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 391 ~~~--~l~~~~g~~d~~i~v~d~~~ 413 (507)
++. ++++ |+ ++.+.+|++.+
T Consensus 281 ~~~~~~~as--g~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 281 TGRKNYIAS--GF-DNGFTVLSLGN 302 (304)
T ss_dssp TCGGGCEEE--EE-TTEEEEEECC-
T ss_pred CCCceEEEE--ec-CCceEEEEecc
Confidence 886 3555 55 55577887754
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-40 Score=310.70 Aligned_cols=274 Identities=17% Similarity=0.240 Sum_probs=232.4
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCCce---eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTNKT---QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER- 242 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~- 242 (507)
|.+++|+|++ +++++.|+.|++|++.+++. .......+ |...|.+++|+|++++|+++ +.||.|++||+.+++
T Consensus 54 v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~ 131 (337)
T 1gxr_A 54 VCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLN-RDNYIRSCKLLPDGCTLIVG-GEASTLSIWDLAAPTP 131 (337)
T ss_dssp CCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSC-TTSBEEEEEECTTSSEEEEE-ESSSEEEEEECCCC--
T ss_pred eEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccC-CCCcEEEEEEcCCCCEEEEE-cCCCcEEEEECCCCCc
Confidence 4456677766 56655699999999987653 22333334 88999999999999999999 899999999999877
Q ss_pred -eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEE
Q psy8285 243 -LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIW 318 (507)
Q Consensus 243 -~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~ 318 (507)
....+..|...+.+++| ++++|++++.||.|++||+++.+ ....+..|...+.+++|+|+++++++++ |+.|++|
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 56677889999999999 68899999999999999999875 5667778999999999999999999999 6999999
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEE
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTS 398 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 398 (507)
|++++ +.+..+. +...+.+++|+|++..+++.+. ++.|++||+++++......+...+.+++|+|++++|++
T Consensus 211 d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~---~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~- 282 (337)
T 1gxr_A 211 DLREG---RQLQQHD-FTSQIFSLGYCPTGEWLAVGME---SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVS- 282 (337)
T ss_dssp ETTTT---EEEEEEE-CSSCEEEEEECTTSSEEEEEET---TSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEE-
T ss_pred ECCCC---ceEeeec-CCCceEEEEECCCCCEEEEEcC---CCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEE-
Confidence 99987 5555554 7889999999999966655443 99999999999887655555588999999999999999
Q ss_pred eccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 399 HGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 399 ~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++.
T Consensus 283 -~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 283 -TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp -EETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred -ecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 788999999999999887554 478899999999999999999999999999973
No 25
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.3e-41 Score=306.60 Aligned_cols=279 Identities=15% Similarity=0.254 Sum_probs=241.5
Q ss_pred cceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 166 FYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 166 ~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
..|.+++|+|++ +++++.|+.|++||+.+++....+.. |..+|.+++|+|++++|+++ +.|+.|++||+.+++.
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~-s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV---TETPVRAGKFIARKNWIIVG-SDDFRIRVFNYNTGEK 89 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEEEGGGTEEEEE-ETTSEEEEEETTTCCE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec---cCCcEEEEEEeCCCCEEEEE-CCCCEEEEEECCCCcE
Confidence 348899999998 77778999999999998887655554 88999999999999999999 9999999999999999
Q ss_pred EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CCCEEEEEe-CCcEEEEE
Q psy8285 244 IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d 319 (507)
+..+.+|...|.+++| ++++|++++.|++|++||+++.......+.+|...|.+++|+| ++.+|++++ |+.|++||
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd 169 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999 6889999999999999999887555667889999999999999 678999999 79999999
Q ss_pred cCCCCCCCCeeee-cCCCCCeeEEEEccCC-CcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEE
Q psy8285 320 FRQLDAKRPQVNN-QCHLSAVKAIAWCPWE-PTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELV 396 (507)
Q Consensus 320 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~ 396 (507)
++.. .+...+ ..|...+..+.|+|.. ..++++++. |++|++||+++++++..+..+ ..+.+++|+|++++|+
T Consensus 170 ~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~--D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 170 LGQS---TPNFTLTTGQERGVNYVDYYPLPDKPYMITASD--DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp TTCS---SCSEEEECCCTTCEEEEEECCSTTCCEEEEEET--TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred CCCC---CccceeccCCcCcEEEEEEEEcCCCCEEEEEcC--CCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence 9876 333333 4566889999998732 245666654 999999999999999999877 7899999999999999
Q ss_pred EEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC--EEEEEeCCCcEEEEecCCC
Q psy8285 397 TSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT--CVAAASADETISIWNCFPR 456 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~ 456 (507)
+ |+.||.|++||+.+++.+..+..|...+.+++|+|++. ++++|+.| .+.+|++...
T Consensus 245 s--~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 245 S--GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp E--EETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred E--EcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence 9 88999999999999999999999999999999999875 57777655 5788887653
No 26
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.9e-41 Score=309.32 Aligned_cols=279 Identities=16% Similarity=0.288 Sum_probs=241.2
Q ss_pred ccceeeeeeCCCC---EEEEEcCCeEEEEECCCCce---eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 165 DFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKT---QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 165 ~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
...|.+++|+|++ +++++.|+.|++|++..... .....+.+ |...|.+++|+|++++|+++ +.|++|++||+
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~-s~D~~v~~wd~ 94 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG-HSHIVQDCTLTADGAYALSA-SWDKTLRLWDV 94 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEET
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeC-CcccEEEEEECCCCCEEEEE-eCCCEEEEEEC
Confidence 4458899999853 77788999999999864321 23445666 99999999999999999999 99999999999
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC------CCEEEEE
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN------GRYLASG 310 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~ 310 (507)
.+++.+..+.+|...|.+++| ++.+|++++.|+.|++||++.. ....+.+|...|.++.|+|. +..++++
T Consensus 95 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 95 ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred CCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 999999999999999999999 6889999999999999999753 46677889999999999985 4478888
Q ss_pred e-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEEC
Q psy8285 311 S-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWS 389 (507)
Q Consensus 311 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s 389 (507)
+ |+.|++||++.. +....+.+|...|.+++|+|++.. +++++. |+.|++||+.+++++..+..+..+.+++|+
T Consensus 173 ~~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~sp~g~~-l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s 246 (319)
T 3frx_A 173 GNDKMVKAWNLNQF---QIEADFIGHNSNINTLTASPDGTL-IASAGK--DGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246 (319)
T ss_dssp ETTSCEEEEETTTT---EEEEEECCCCSCEEEEEECTTSSE-EEEEET--TCEEEEEETTTTEEEEEEECCSCEEEEEEC
T ss_pred eCCCEEEEEECCcc---hhheeecCCCCcEEEEEEcCCCCE-EEEEeC--CCeEEEEECCCCcEEEEecCCCcEEEEEEc
Confidence 8 699999999987 677788899999999999999954 455544 999999999999999999888899999999
Q ss_pred CCCCeEEEEeccCCCeEEEEeCCCccEEEEee--------ccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 390 EQYRELVTSHGKQDCSLKMWEYPRLHLIEELK--------IHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 390 ~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~--------~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
|++.++++ +. ++.+++|++.....+..+. .|...+.+++|+|||++|++|+.||.|++|++.+.
T Consensus 247 p~~~~la~--~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 247 PNRYWLAA--AT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SSSSEEEE--EE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CCCCEEEE--Ec-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99999988 44 4569999998877766654 34567899999999999999999999999998764
No 27
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.6e-41 Score=316.24 Aligned_cols=280 Identities=18% Similarity=0.314 Sum_probs=234.2
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|+||.+.|+||+|+|++++ |+||+ .|++|+|||..+++....+. +...
T Consensus 60 l~gH~~~V~~~~~s~d~~~-l~s~s--~Dg~v~vWd~~~~~~~~~~~~~~~~---------------------------- 108 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRR-IVSSS--QDGKVIVWDSFTTNKEHAVTMPCTW---------------------------- 108 (354)
T ss_dssp EECCSSCEEEEEECTTSSE-EEEEE--TTSEEEEEETTTCCEEEEEECSSSC----------------------------
T ss_pred ecCCCCeEEEEEECCCCCE-EEEEe--CCCeEEEEECCCCCcceEEecCCCC----------------------------
Confidence 6799999999999999986 89998 89999999998887655433 1111
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 109 -------------------------------------------------------------------------------- 108 (354)
T 2pbi_B 109 -------------------------------------------------------------------------------- 108 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCc----eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEE
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNK----TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYID 234 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~ 234 (507)
+.+++|+|++ +++++.|+.+++|++.... ......+.+ |...|.+++|+|++..|+++ +.|++|+
T Consensus 109 -------v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~-s~D~~v~ 179 (354)
T 2pbi_B 109 -------VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM-HTNYLSACSFTNSDMQILTA-SGDGTCA 179 (354)
T ss_dssp -------CCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEE-CSSCEEEEEECSSSSEEEEE-ETTSEEE
T ss_pred -------EEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeec-cCCcEEEEEEeCCCCEEEEE-eCCCcEE
Confidence 3356777776 5666799999999986532 111222334 89999999999999999999 9999999
Q ss_pred EEeCCCceeEEEEeecCccEEEEEe----eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEE
Q psy8285 235 LWHEQEERLIQKLRTHMHQVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASG 310 (507)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 310 (507)
+||+.+++.+..+.+|...|.+++| ++++|++++.||.|++||+++++ ....+..|...|.+++|+|++++|+++
T Consensus 180 lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~ 258 (354)
T 2pbi_B 180 LWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGDAFASG 258 (354)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCeEEEEEeCCCCEEEEE
Confidence 9999999999999999999999988 36899999999999999999876 566788899999999999999999999
Q ss_pred e-CCcEEEEEcCCCCCCCCeeeecC--CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEE
Q psy8285 311 S-NNTVKIWDFRQLDAKRPQVNNQC--HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSI 386 (507)
Q Consensus 311 ~-d~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~ 386 (507)
+ |++|++||++.. ..+..+.. +...+.+++|+|++..+ ++++. |+.|++||+.+++.+..+..+ ..|.++
T Consensus 259 s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~~~s~~g~~l-~~g~~--d~~i~vwd~~~~~~~~~l~~h~~~v~~l 332 (354)
T 2pbi_B 259 SDDATCRLYDLRAD---REVAIYSKESIIFGASSVDFSLSGRLL-FAGYN--DYTINVWDVLKGSRVSILFGHENRVSTL 332 (354)
T ss_dssp ETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECTTSSEE-EEEET--TSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred eCCCeEEEEECCCC---cEEEEEcCCCcccceeEEEEeCCCCEE-EEEEC--CCcEEEEECCCCceEEEEECCCCcEEEE
Confidence 9 699999999876 44444432 33578999999999554 44544 999999999999988888776 789999
Q ss_pred EECCCCCeEEEEeccCCCeEEEEe
Q psy8285 387 LWSEQYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 387 ~~s~~~~~l~~~~g~~d~~i~v~d 410 (507)
+|+|++++|++ |+.|+.|++|+
T Consensus 333 ~~spdg~~l~s--gs~D~~v~vW~ 354 (354)
T 2pbi_B 333 RVSPDGTAFCS--GSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSCEEE--EETTSEEEEEC
T ss_pred EECCCCCEEEE--EcCCCCEEecC
Confidence 99999999999 88999999996
No 28
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-42 Score=327.31 Aligned_cols=286 Identities=18% Similarity=0.312 Sum_probs=235.6
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|+||.+.|++++|+|+|++ |+||+ .|++|+|||+.+++++.++. |...|.
T Consensus 62 l~gH~~~V~~~~~sp~~~~-l~s~s--~D~~v~iWd~~~~~~~~~~~~h~~~v~-------------------------- 112 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNW-IVSAS--QDGRLIVWNALTSQKTHAIKLHCPWVM-------------------------- 112 (380)
T ss_dssp ECCCSSCEEEEEECTTSSC-EEEEE--TTSEEEEEETTTTEEEEEEECCCTTCC--------------------------
T ss_pred ccccccEEEEEEEcCCCCE-EEEEe--CCCeEEEEECCCCccceEEecCCCCEE--------------------------
Confidence 6899999999999999987 88998 89999999999998776655 333333
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 113 -------------------------------------------------------------------------------- 112 (380)
T 3iz6_a 113 -------------------------------------------------------------------------------- 112 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCc-----eeEEEecCCCCCCceEEEEEccCC-CeEEEEeCCCCc
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNK-----TQLLVEYPTYDNAYISCVAWKPRT-TDLAVTNTCTEY 232 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~dg~ 232 (507)
+++|+|++ +++++.|+.+++|++.+.. ......+.+ |.+.|.++.|+|++ ..|+++ +.|++
T Consensus 113 ---------~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~g-h~~~v~~~~~~~~~~~~l~s~-s~D~~ 181 (380)
T 3iz6_a 113 ---------ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTG-HKGYASSCQYVPDQETRLITG-SGDQT 181 (380)
T ss_dssp ---------CCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCC-CSSCCCCCBCCSSSSSCEEEE-CTTSC
T ss_pred ---------EEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccC-CCcceEEEEEecCCCCEEEEE-CCCCc
Confidence 35555655 5666799999999987532 112233456 99999999999975 467777 99999
Q ss_pred EEEEeCCCceeEEEE-----eecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC
Q psy8285 233 IDLWHEQEERLIQKL-----RTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG 304 (507)
Q Consensus 233 i~iwd~~~~~~~~~~-----~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 304 (507)
|++||+.+++.+..+ .+|...|.+++| ++++|++|+.|+.|++||++........+.+|...|.+++|+|++
T Consensus 182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence 999999999988877 578999999999 578999999999999999986555777888999999999999999
Q ss_pred CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCC-------CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee
Q psy8285 305 RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCH-------LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 376 (507)
Q Consensus 305 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 376 (507)
++|++++ |++|++||++++ ..+..+..+ ...|++++|+|++..+ ++++. |+.|++||+..++.+..
T Consensus 262 ~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~--dg~i~vwd~~~~~~~~~ 335 (380)
T 3iz6_a 262 QRFGTGSDDGTCRLFDMRTG---HQLQVYNREPDRNDNELPIVTSVAFSISGRLL-FAGYS--NGDCYVWDTLLAEMVLN 335 (380)
T ss_dssp SEEEEECSSSCEEEEETTTT---EEEEEECCCCSSSCCSSCSCSEEEECSSSSEE-EEECT--TSCEEEEETTTCCEEEE
T ss_pred CeEEEEcCCCeEEEEECCCC---cEEEEecccccccccccCceEEEEECCCCCEE-EEEEC--CCCEEEEECCCCceEEE
Confidence 9999999 699999999987 555544432 2348999999999654 45544 99999999999988776
Q ss_pred e----ecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 377 V----KTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 377 ~----~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
+ ..+ ..|.+++|+|+|++|++ |+.|+.|++|++...+
T Consensus 336 ~~~~~~~h~~~v~~l~~s~dg~~l~s--gs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 336 LGTLQNSHEGRISCLGLSSDGSALCT--GSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ECCSCSSCCCCCCEEEECSSSSEEEE--ECTTSCEEEEECCSSS
T ss_pred EecccCCCCCceEEEEECCCCCEEEE--eeCCCCEEEEecCCCc
Confidence 6 333 68999999999999999 8999999999987654
No 29
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.1e-42 Score=375.48 Aligned_cols=443 Identities=15% Similarity=0.191 Sum_probs=314.9
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
+.+|.+.|++++|+|+|++ |++|+ .|++|+|||+.+++++.++. |...|.++.|+++........ .
T Consensus 653 ~~~h~~~v~~~~~s~~~~~-l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-g--------- 719 (1249)
T 3sfz_A 653 IKAHEDEVLCCAFSSDDSY-IATCS--ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT-G--------- 719 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEE-E---------
T ss_pred eccCCCCEEEEEEecCCCE-EEEEe--CCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEE-E---------
Confidence 5689999999999999997 88888 79999999999999999988 889999999998654322111 1
Q ss_pred CCcccccccccccccccc--------Cch--hHHHHHHhhhhhhcccccccccceeEecCCCCCc-----------cccc
Q psy8285 81 SSYDSLCSHYLLQQANDE--------TIS--YREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSP-----------TQFL 139 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 139 (507)
..|..+..|++...... .+. .+... .. ....+...+..++|......... ....
T Consensus 720 -~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~-~~---~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 794 (1249)
T 3sfz_A 720 -SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD-DE---LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 794 (1249)
T ss_dssp -ETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS-TT---EEEEEESSSEEEEEEGGGTEEEEEEECCCCC-------
T ss_pred -eCCCeEEEEECCCcchhheecCCCCCEEEEEEecC-CC---EEEEEECCCeEEEEeCCCCcccceecccccccccCCcc
Confidence 12222333332221100 000 00000 00 11112222345666554321000 0000
Q ss_pred ccCCCCCccccCCchh------------hhcCC--------CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCce
Q psy8285 140 RTLGKLPRKVKAKPER------------ILEAP--------SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT 197 (507)
Q Consensus 140 ~~~~~~~~~~~~~~~~------------~~~~~--------~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~ 197 (507)
.........+...|.. +++.. .......+.+++|+|++ +++++.++.|++|++.++..
T Consensus 795 ~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~ 874 (1249)
T 3sfz_A 795 EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK 874 (1249)
T ss_dssp -CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE
T ss_pred ccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 0000000000000000 00000 00223457889999987 55667999999999998876
Q ss_pred eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC--------------------------------------
Q psy8285 198 QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ-------------------------------------- 239 (507)
Q Consensus 198 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~-------------------------------------- 239 (507)
.... .+ |...|.+++|+|+++.++++ +.||.|++||+.
T Consensus 875 ~~~~--~~-h~~~v~~v~~spdg~~l~s~-s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1249)
T 3sfz_A 875 VADC--RG-HLSWVHGVMFSPDGSSFLTA-SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950 (1249)
T ss_dssp EEEE--CC-CSSCEEEEEECTTSSEEEEE-ETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred eeec--CC-CccceEEEEECCCCCEEEEE-eCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence 5444 44 88899999999999888888 888888888743
Q ss_pred -----------------------------------------CceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEE
Q psy8285 240 -----------------------------------------EERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHY 276 (507)
Q Consensus 240 -----------------------------------------~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~ 276 (507)
+++....+.+|...|.+++| ++++|++++.||.|++|
T Consensus 951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030 (1249)
T ss_dssp ESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEE
T ss_pred cCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 22333445568888999999 78899999999999999
Q ss_pred ECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEc
Q psy8285 277 DVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 277 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
|+.+++ ......|...+.+++|+|++.+++.+.|+.|++||+.++ +....+.+|...|.+++|+|++..+++.+.
T Consensus 1031 d~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~ 1105 (1249)
T 3sfz_A 1031 NWQTGD--YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG---RIERDFTCHQGTVLSCAISSDATKFSSTSA 1105 (1249)
T ss_dssp ETTTTE--EECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT---CCCEEEECCSSCCCCEEECSSSSSCEEECC
T ss_pred ECCCCc--eEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC---ceeEEEcccCCcEEEEEECCCCCEEEEEcC
Confidence 999875 335668899999999999876555555899999999988 788888899999999999999976655443
Q ss_pred cCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEe---------eccccc
Q psy8285 357 GICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEEL---------KIHQER 426 (507)
Q Consensus 357 ~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~---------~~~~~~ 426 (507)
|++|++||+.+++++..+..+ ..|++++|+|++++|++ ++.||.|++||+.+++.+..+ ..|.+.
T Consensus 1106 ---d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1180 (1249)
T 3sfz_A 1106 ---DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLAT--GDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW 1180 (1249)
T ss_dssp ---SSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEE--EETTSCCCEEESSSSCCCCCCCCCC-------CCSC
T ss_pred ---CCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEE--EeCCCEEEEEECCCCceEEEeccccccccccccCce
Confidence 999999999999998888876 68999999999999999 889999999999998877665 578899
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee-ecCCCcceEEeeccC
Q psy8285 427 ILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR-QVGSGSSLEFAILKQ 478 (507)
Q Consensus 427 i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 478 (507)
|++++|+||+++|++++ |.|++||+.+++...... ....+..+.|+++..
T Consensus 1181 v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~ 1231 (1249)
T 3sfz_A 1181 VTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFR 1231 (1249)
T ss_dssp CCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSC
T ss_pred EEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCC
Confidence 99999999999999886 899999999988877654 334456666766543
No 30
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-41 Score=318.68 Aligned_cols=283 Identities=15% Similarity=0.219 Sum_probs=224.5
Q ss_pred ccceeeeeeCCCC-EE-EEEc------CCeEEEEECCCCceeEE--EecCCCCCCceEEEEEccCCCeEEEEeCCCCcEE
Q psy8285 165 DFYTSGLDWGYHD-TL-AVAL------DTSVYTWNTKTNKTQLL--VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYID 234 (507)
Q Consensus 165 ~~~i~~~~~s~~~-~~-~~~~------~~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~ 234 (507)
...|++++||||| +| +++. |+.|++|+..++..... ....+ |...|.+++|+|++.+ +++ +.||+|+
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~s~d~~~-l~~-s~dg~v~ 118 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQ-TEAGVTDVAWVSEKGI-LVA-SDSGAVE 118 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEE-CSSCEEEEEEETTTEE-EEE-ETTSCEE
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCC-CCCCEEEEEEcCCCCE-EEE-ECCCEEE
Confidence 4468999999999 44 4454 67899999877654221 11223 7889999999999855 455 6899999
Q ss_pred EEeCCCceeEE----EEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC-EE
Q psy8285 235 LWHEQEERLIQ----KLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR-YL 307 (507)
Q Consensus 235 iwd~~~~~~~~----~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 307 (507)
|||+.+++... ...+|...|.+++| ++++|++++.|+.|++||+++++ ....+..|...|++++|+|++. ++
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-VLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCcee
Confidence 99998876543 34479999999999 78999999999999999999875 6677889999999999999875 67
Q ss_pred EEEe-CCcEEEEEcCCCCCCCCeee--ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCe
Q psy8285 308 ASGS-NNTVKIWDFRQLDAKRPQVN--NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQV 383 (507)
Q Consensus 308 ~~~~-d~~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i 383 (507)
++++ |+.|++||++++ ++... ...+...+.+++|+|++..++++++. |+.|++||+++++++..+..+ ..|
T Consensus 198 ~s~~~dg~v~~wd~~~~---~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~--d~~i~~wd~~~~~~~~~~~~~~~~v 272 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKP---KPATRIDFCASDTIPTSVTWHPEKDDTFACGDE--TGNVSLVNIKNPDSAQTSAVHSQNI 272 (357)
T ss_dssp EEEETTSCEEECCTTSS---SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES--SSCEEEEESSCGGGCEEECCCSSCE
T ss_pred eeeccCCceEEEECCCC---ceeeeeeeccccccccchhhhhcccceEEEeec--ccceeEEECCCCcEeEEEeccceeE
Confidence 7777 699999999987 44333 34467789999999998888888875 999999999999999888876 689
Q ss_pred EEEEECCCCC-eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECC-CCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 384 TSILWSEQYR-ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP-DQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 384 ~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
++++|+|++. +|++ |+.|+.|+|||+++++.+..+ +|...|++++|+| ++++|++++.||+|++|++....+.
T Consensus 273 ~~l~~sp~~~~~las--gs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 273 TGLAYSYHSSPFLAS--ISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EEEEECSSSSCCEEE--EETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred EEEEEcCCCCCEEEE--EeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 9999999985 6777 889999999999998887655 7999999999998 7999999999999999999765443
No 31
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.1e-40 Score=311.30 Aligned_cols=241 Identities=17% Similarity=0.315 Sum_probs=211.2
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY 284 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 284 (507)
|...|.+++|+|++++|+++ +.|+.|++|+............+...+..+.+ ++..|++++.|+.+++||+......
T Consensus 85 h~~~V~~~~~s~dg~~l~s~-~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~ 163 (340)
T 4aow_A 85 HSHFVSDVVISSDGQFALSG-SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 163 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred CCCCEEEEEECCCCCEEEEE-cccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE
Confidence 88999999999999999999 99999999999999988888888888888888 6889999999999999999876645
Q ss_pred ceeeecCCCceEEEEEcCCC--CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 285 PTAITREGDVVCGLKWSPNG--RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 285 ~~~~~~~~~~v~~~~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
......|...+..++|++++ .++++++ |+.|++||++++ +....+.+|...|++++|+|+++. +++++. |+
T Consensus 164 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~--Dg 237 (340)
T 4aow_A 164 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---KLKTNHIGHTGYLNTVTVSPDGSL-CASGGK--DG 237 (340)
T ss_dssp EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSE-EEEEET--TC
T ss_pred EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---ceeeEecCCCCcEEEEEECCCCCE-EEEEeC--CC
Confidence 55667889999999999865 4677777 699999999987 788888899999999999999854 455544 99
Q ss_pred eEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee---------ccccceeEEEE
Q psy8285 362 TVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK---------IHQERILSAVL 432 (507)
Q Consensus 362 ~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~---------~~~~~i~~~~~ 432 (507)
.|++||+++.+++..+..+..+.+++|+|++.++++ +.|+.|++||++++..+..+. +|...|++++|
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 314 (340)
T 4aow_A 238 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA---ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 314 (340)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEE---EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEE
T ss_pred eEEEEEeccCceeeeecCCceEEeeecCCCCceeec---cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE
Confidence 999999999999999998899999999998876654 469999999999887766553 57889999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 433 SPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 433 s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
+|++++|++|+.||.|+|||+.+++
T Consensus 315 s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 315 SADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999999999875
No 32
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-41 Score=322.47 Aligned_cols=281 Identities=20% Similarity=0.311 Sum_probs=241.4
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
...|.+++|+|++ +++++.|+.|++||..+++....+.. |...|.+++|+|++++|+++ +.|+.+++||+.+..
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~---h~~~v~~~~~s~~g~~las~-~~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL---HCPWVMECAFAPNGQSVACG-GLDSACSIFNLSSQA 141 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC---CCTTCCCCEECTTSSEEEEC-CSSSCCEEEECCCCS
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec---CCCCEEEEEECCCCCEEEEe-eCCCcEEEEECCCCc
Confidence 4468999999987 77888999999999999887665554 88999999999999999999 999999999987532
Q ss_pred -------eEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceee-----ecCCCceEEEEEcC-CCCE
Q psy8285 243 -------LIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAI-----TREGDVVCGLKWSP-NGRY 306 (507)
Q Consensus 243 -------~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~ 306 (507)
....+.+|...+.++.| ++..|++++.|++|++||+++++. ...+ .+|...|.+++|++ ++++
T Consensus 142 ~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 220 (380)
T 3iz6_a 142 DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANM 220 (380)
T ss_dssp SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred cccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCCCE
Confidence 34457789999999999 356899999999999999998762 3333 57889999999987 8899
Q ss_pred EEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-----
Q psy8285 307 LASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----- 380 (507)
Q Consensus 307 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----- 380 (507)
|++|+ |+.|++||++.. ...+..+.+|...|.+++|+|++. ++++++. |++|++||+++++++..+..+
T Consensus 221 l~sgs~D~~v~~wd~~~~--~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~--D~~i~lwd~~~~~~~~~~~~~~~~~~ 295 (380)
T 3iz6_a 221 FISGSCDTTVRLWDLRIT--SRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSD--DGTCRLFDMRTGHQLQVYNREPDRND 295 (380)
T ss_dssp EEEEETTSCEEEEETTTT--CCCCEEECCCSSCCCEEEECTTSS-EEEEECS--SSCEEEEETTTTEEEEEECCCCSSSC
T ss_pred EEEEECCCeEEEEECCCC--CcceEEECCcCCCeEEEEEecCCC-eEEEEcC--CCeEEEEECCCCcEEEEecccccccc
Confidence 99999 799999999843 156778889999999999999985 5555554 999999999999988776543
Q ss_pred ---CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEe----eccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 381 ---SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEEL----KIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 381 ---~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
..+.+++|+|+|++|++ |+.||.|++||+.+++.+..+ .+|.+.|++++|+|+|++|++|+.|++|++|++
T Consensus 296 ~~~~~v~~~~~s~~g~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 296 NELPIVTSVAFSISGRLLFA--GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CSSCSCSEEEECSSSSEEEE--ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred cccCceEEEEECCCCCEEEE--EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 23889999999999999 889999999999999888777 679999999999999999999999999999999
Q ss_pred CCCC
Q psy8285 454 FPRD 457 (507)
Q Consensus 454 ~~~~ 457 (507)
...+
T Consensus 374 ~~~~ 377 (380)
T 3iz6_a 374 SGHR 377 (380)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 8654
No 33
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.7e-41 Score=312.54 Aligned_cols=287 Identities=20% Similarity=0.325 Sum_probs=232.5
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEe-cCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc--
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVE-YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-- 241 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-- 241 (507)
.+.+++|+|++ +++++.|+.|++|++.+++...... ..+ |...|.+++|+|++++|+++ +.|+.+++||+.++
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~-s~D~~v~iw~~~~~~~ 95 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEG-HQRTVRKVAWSPCGNYLASA-SFDATTCIWKKNQDDF 95 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSS-CSSCEEEEEECTTSSEEEEE-ETTSCEEEEEECCC-E
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccc-cCCcEEEEEECCCCCEEEEE-ECCCcEEEEEccCCCe
Confidence 47789999998 6677899999999998876543333 355 99999999999999999999 99999999998876
Q ss_pred eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc--CceeeecCCCceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 242 RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD--YPTAITREGDVVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
+.+..+.+|...|.+++| ++++|++++.|+.|++||++.... ....+..|...|.+++|+|++++|++++ |+.|+
T Consensus 96 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~ 175 (345)
T 3fm0_A 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK 175 (345)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEE
T ss_pred EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEE
Confidence 457788899999999999 689999999999999999987642 2446678999999999999999999999 69999
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC---------------Ceeeeeec--
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG---------------KEKCHVKT-- 379 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---------------~~~~~~~~-- 379 (507)
+||.+.+. ..+...+.+|...|++++|+|++..+ ++++. |++|++||.... +++..+..
T Consensus 176 ~w~~~~~~-~~~~~~~~~h~~~v~~l~~sp~g~~l-~s~s~--D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 251 (345)
T 3fm0_A 176 LYREEEDD-WVCCATLEGHESTVWSLAFDPSGQRL-ASCSD--DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251 (345)
T ss_dssp EEEEETTE-EEEEEEECCCSSCEEEEEECTTSSEE-EEEET--TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSC
T ss_pred EEEecCCC-EEEEEEecCCCCceEEEEECCCCCEE-EEEeC--CCeEEEeccccCCCCccceeeccCCccceeEEecCCC
Confidence 99998651 12346778899999999999999554 55544 999999996332 12223332
Q ss_pred CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc---------EEEEeeccccceeEEEECCCC-CEEEEEeCCCcEE
Q psy8285 380 DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH---------LIEELKIHQERILSAVLSPDQ-TCVAAASADETIS 449 (507)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~---------~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~dg~i~ 449 (507)
...|.+++|+|++..|++ ++.|+.|++|+..... ......+|...|++++|+|++ .+|++++.||+|+
T Consensus 252 ~~~v~~v~~~~~~~~l~s--~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~ 329 (345)
T 3fm0_A 252 SRTIYDIAWCQLTGALAT--ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVA 329 (345)
T ss_dssp SSCEEEEEECTTTCCEEE--EETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CCcEEEEEEecCCCEEEE--EeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEE
Confidence 367999999999999999 7889999999986542 122345799999999999987 5999999999999
Q ss_pred EEecCCCCcccc
Q psy8285 450 IWNCFPRDKKRK 461 (507)
Q Consensus 450 iw~~~~~~~~~~ 461 (507)
+|++.++++...
T Consensus 330 ~W~~~~~~~~~~ 341 (345)
T 3fm0_A 330 FWKYQRPEGLHH 341 (345)
T ss_dssp EEEECC------
T ss_pred EEEecCCCCccc
Confidence 999998776554
No 34
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-41 Score=352.31 Aligned_cols=384 Identities=13% Similarity=0.076 Sum_probs=267.2
Q ss_pred ccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeeecCcccceeeccccccccccCCccCCceeEeecCCc
Q psy8285 4 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDRSSY 83 (507)
Q Consensus 4 gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
.|...|++|+|+| |++ |++++ .|++|+|||+.+++++.++.+...|.++.|+|+++.+.+.. .
T Consensus 56 ~~~~~V~~l~fsp-g~~-L~S~s--~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs-------------~ 118 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIY-LVVIN--AKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGL-------------Q 118 (902)
T ss_dssp SSCCCEEEEEEET-TTE-EEEEE--TTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEE-------------T
T ss_pred CCCCCEEEEEEcC-CCE-EEEEE--CcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEc-------------C
Confidence 5888999999999 785 88888 89999999999999999998888999999999887654421 2
Q ss_pred cccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCCcc
Q psy8285 84 DSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSII 163 (507)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (507)
|..++.|++... .+..+. ++.. ...... ...
T Consensus 119 dg~V~lwd~~~~----------------------------~~~~~~-------------------i~~~-~~~~~~-~~~ 149 (902)
T 2oaj_A 119 NGSMIVYDIDRD----------------------------QLSSFK-------------------LDNL-QKSSFF-PAA 149 (902)
T ss_dssp TSCEEEEETTTT----------------------------EEEEEE-------------------ECCH-HHHHTC-SSS
T ss_pred CCcEEEEECCCC----------------------------ccccce-------------------eccc-cccccc-ccc
Confidence 233333433221 000000 0000 000000 001
Q ss_pred cccceeeeeeCCCC---EEEEEcCCeEEEEECCCCceeEEEecC---------------CCCCCceEEEEEccCCCeEEE
Q psy8285 164 NDFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKTQLLVEYP---------------TYDNAYISCVAWKPRTTDLAV 225 (507)
Q Consensus 164 ~~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~ 225 (507)
....|.+++|+|++ +++++.|+.| +||+.+++....+... ..|...|.+++|+|+|++|++
T Consensus 150 h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 228 (902)
T 2oaj_A 150 RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT 228 (902)
T ss_dssp CCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence 12347889999963 5666689999 9999998876655432 013578999999999999999
Q ss_pred EeCCCCcEEEEeCCCceeEEE--Ee---e-------------cCccEEEEEe----e---CCEEEEEecC----------
Q psy8285 226 TNTCTEYIDLWHEQEERLIQK--LR---T-------------HMHQVIAMCW----N---GNLLSCGTIG---------- 270 (507)
Q Consensus 226 ~~~~dg~i~iwd~~~~~~~~~--~~---~-------------~~~~v~~~~~----~---~~~l~~~~~d---------- 270 (507)
+ +.||.|++||+.+++++.. +. . |...|.+++| + +.+|++|+.+
T Consensus 229 g-s~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~ 307 (902)
T 2oaj_A 229 I-HEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTM 307 (902)
T ss_dssp E-ETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEE
T ss_pred E-ECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEE
Confidence 9 9999999999998877653 21 1 2346888887 1 1345555433
Q ss_pred ------------------------------------------------------------------CeEEEEECCCCCcC
Q psy8285 271 ------------------------------------------------------------------GNILHYDVRTHSDY 284 (507)
Q Consensus 271 ------------------------------------------------------------------g~i~i~d~~~~~~~ 284 (507)
+.|++||+.++...
T Consensus 308 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~ 387 (902)
T 2oaj_A 308 IDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFT 387 (902)
T ss_dssp EEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEE
T ss_pred EecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcc
Confidence 33444444332100
Q ss_pred ce------ee----------------------------------ecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q psy8285 285 PT------AI----------------------------------TREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 285 ~~------~~----------------------------------~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 323 (507)
.. .+ .+|...+.+++|+|++++|++|+ |++|++||+..+
T Consensus 388 ~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g 467 (902)
T 2oaj_A 388 DKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHG 467 (902)
T ss_dssp CCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCC
T ss_pred cccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCc
Confidence 00 01 12222333445578999999999 799999999886
Q ss_pred CCCC-Ceee--e-----cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-----------------------
Q psy8285 324 DAKR-PQVN--N-----QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK----------------------- 372 (507)
Q Consensus 324 ~~~~-~~~~--~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----------------------- 372 (507)
.... .... + .+|...|.+++|+|+++ ++++++. |++|++||+.+++
T Consensus 468 ~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs~--DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (902)
T 2oaj_A 468 DIQDNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSIE--TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN 544 (902)
T ss_dssp TTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEET--TSCEEEEEEEECCC---------------CCSCCGG
T ss_pred cccCCceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEec--CcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence 2211 1111 1 17889999999999995 5555554 9999999997663
Q ss_pred ----------------------eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE-----Eee-cc
Q psy8285 373 ----------------------EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE-----ELK-IH 423 (507)
Q Consensus 373 ----------------------~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~-----~~~-~~ 423 (507)
++..+..+ ..|++++|+|+| +||+ |+.|+.|++||+++...+. .+. +|
T Consensus 545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAs--gs~D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGI--AYAAGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEE--EETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEE--EeCCCcEEEEECCCCeEEEEeehhHhcccc
Confidence 24555545 789999999999 9988 8899999999998877654 233 88
Q ss_pred ccceeEEEEC-----CCC---CEEEEEeCCCcEEEEec---CCCCcccc
Q psy8285 424 QERILSAVLS-----PDQ---TCVAAASADETISIWNC---FPRDKKRK 461 (507)
Q Consensus 424 ~~~i~~~~~s-----~~~---~~l~s~~~dg~i~iw~~---~~~~~~~~ 461 (507)
...|++++|+ ||| ++|++++.|++|++||+ .+++....
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~ 670 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ 670 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence 9999999999 885 89999999999999999 55554443
No 35
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1e-40 Score=307.80 Aligned_cols=231 Identities=13% Similarity=0.227 Sum_probs=196.3
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
|.+++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++.+|+++ +.|+.|++||++ ++.+.
T Consensus 68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~l~s~-s~D~~i~vwd~~-~~~~~ 142 (319)
T 3frx_A 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--G-HKSDVMSVDIDKKASMIISG-SRDKTIKVWTIK-GQCLA 142 (319)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--C-CSSCEEEEEECTTSCEEEEE-ETTSCEEEEETT-SCEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc--c-CCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECC-CCeEE
Confidence 5567788876 6778899999999999988765544 4 99999999999999999999 999999999986 46778
Q ss_pred EEeecCccEEEEEee--------CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 246 KLRTHMHQVIAMCWN--------GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 246 ~~~~~~~~v~~~~~~--------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
.+.+|...+.++.|. +..|++++.|+.|++||+++.+ ....+.+|...|.+++|+|++++|++++ |+.|+
T Consensus 143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~ 221 (319)
T 3frx_A 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221 (319)
T ss_dssp EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 888999999999992 3489999999999999998865 5567788999999999999999999999 69999
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec---------CCCeEEEE
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT---------DSQVTSIL 387 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---------~~~i~~~~ 387 (507)
+||++.+ +.+..+. +...|.+++|+|++ .+++++. +..+++|++..+..+..+.. ...+.+++
T Consensus 222 iwd~~~~---~~~~~~~-~~~~v~~~~~sp~~-~~la~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 293 (319)
T 3frx_A 222 LWNLAAK---KAMYTLS-AQDEVFSLAFSPNR-YWLAAAT---ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA 293 (319)
T ss_dssp EEETTTT---EEEEEEE-CCSCEEEEEECSSS-SEEEEEE---TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEE
T ss_pred EEECCCC---cEEEEec-CCCcEEEEEEcCCC-CEEEEEc---CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEE
Confidence 9999987 6666666 45689999999998 4555565 67799999988776655532 24689999
Q ss_pred ECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 388 WSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 388 ~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
|+|+|++|++ |+.|+.|++||+.++
T Consensus 294 ~spdg~~l~s--g~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 294 WSADGQTLFA--GYTDNVIRVWQVMTA 318 (319)
T ss_dssp ECTTSSEEEE--EETTSCEEEEEEEEC
T ss_pred ECCCCCEEEE--eecCceEEEEEEeec
Confidence 9999999999 889999999998653
No 36
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.8e-40 Score=311.95 Aligned_cols=281 Identities=19% Similarity=0.315 Sum_probs=235.5
Q ss_pred ccceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCC---------------CCCCceEEEEEccCCCeEEEEeC
Q psy8285 165 DFYTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPT---------------YDNAYISCVAWKPRTTDLAVTNT 228 (507)
Q Consensus 165 ~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~ 228 (507)
...|.+++|+|++ +++.+.++.+++|++.+++....+.... .+...|.+++|+|++++|+++ +
T Consensus 64 ~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~-~ 142 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG-A 142 (393)
T ss_dssp SSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE-E
T ss_pred CCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE-c
Confidence 4468899999998 7777888999999999988765443210 022349999999999999999 9
Q ss_pred CCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CCC
Q psy8285 229 CTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NGR 305 (507)
Q Consensus 229 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 305 (507)
.|+.|++||+.+++.+..+.+|...|.+++| ++++|++++.|+.|++||+++++ .... ..+...+.+++|+| +++
T Consensus 143 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-~~~~-~~~~~~v~~~~~~~~~~~ 220 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLT-LSIEDGVTTVAVSPGDGK 220 (393)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE-EECSSCEEEEEECSTTCC
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-eEEE-EEcCCCcEEEEEECCCCC
Confidence 9999999999999999999999999999999 68999999999999999999875 2333 34667899999999 899
Q ss_pred EEEEEe-CCcEEEEEcCCCCCCCCeeee-------cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-----
Q psy8285 306 YLASGS-NNTVKIWDFRQLDAKRPQVNN-------QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK----- 372 (507)
Q Consensus 306 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----- 372 (507)
+|++++ |+.|++||++++ ..+..+ .+|...|.+++|+|++..+ ++++. |+.|++||+++..
T Consensus 221 ~l~~~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l-~s~s~--d~~v~~wd~~~~~~~~~~ 294 (393)
T 1erj_A 221 YIAAGSLDRAVRVWDSETG---FLVERLDSENESGTGHKDSVYSVVFTRDGQSV-VSGSL--DRSVKLWNLQNANNKSDS 294 (393)
T ss_dssp EEEEEETTSCEEEEETTTC---CEEEEEC------CCCSSCEEEEEECTTSSEE-EEEET--TSEEEEEEC---------
T ss_pred EEEEEcCCCcEEEEECCCC---cEEEeecccccCCCCCCCCEEEEEECCCCCEE-EEEeC--CCEEEEEECCCCCCcccc
Confidence 999999 699999999887 444444 5689999999999999655 45544 9999999997642
Q ss_pred -------eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECC------CCCE
Q psy8285 373 -------EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP------DQTC 438 (507)
Q Consensus 373 -------~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~------~~~~ 438 (507)
+...+..+ ..|.+++|+|++++|++ |+.|+.|++||..+++++..+.+|...|.+++|++ ++++
T Consensus 295 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~ 372 (393)
T 1erj_A 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372 (393)
T ss_dssp ------CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEE
T ss_pred cCCCCCcceEEEecccCcEEEEEECCCCCEEEE--EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCE
Confidence 34445555 67999999999999999 88999999999999999999999999999999986 6789
Q ss_pred EEEEeCCCcEEEEecCCC
Q psy8285 439 VAAASADETISIWNCFPR 456 (507)
Q Consensus 439 l~s~~~dg~i~iw~~~~~ 456 (507)
|++|+.||+|++|++...
T Consensus 373 l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 373 FATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEETTSEEEEEEEEEC
T ss_pred EEEECCCCcEEECccccc
Confidence 999999999999998654
No 37
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=310.03 Aligned_cols=246 Identities=19% Similarity=0.388 Sum_probs=194.5
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc---e
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE---R 242 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~---~ 242 (507)
|.+++|+|++ +++++.|+.+++|+...+.......+.+ |...|.+++|+|++++|+++ +.|+.|++||+.++ +
T Consensus 64 v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~-s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG-HENEVKSVAWAPSGNLLATC-SRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECC-CSSCEEEEEECTTSSEEEEE-ETTSCEEEEEECTTSCEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccC-CCCCceEEEEeCCCCEEEEE-ECCCeEEEEECCCCCCeE
Confidence 5678888877 6677899999999998887666677777 99999999999999999999 99999999999876 3
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc-CceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD-YPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIW 318 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~ 318 (507)
.+..+..|...|.+++| ++++|++++.|+.|++||.+..+. ....+.+|...|.+++|+|++++|++++ |++|++|
T Consensus 142 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW 221 (345)
T 3fm0_A 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221 (345)
T ss_dssp EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence 46677889999999999 688999999999999999987542 3456788999999999999999999999 6999999
Q ss_pred EcCCCCCCC------------CeeeecC-CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe----ee-----e
Q psy8285 319 DFRQLDAKR------------PQVNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE----KC-----H 376 (507)
Q Consensus 319 d~~~~~~~~------------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~-----~ 376 (507)
|........ ++..+.+ |...|++++|+|++..+++.+. |+.|++|+...+.. .. .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG---DDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET---TSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC---CCeEEEEEeCCCCCcceeeEEEEeee
Confidence 975432111 1223333 8889999999999976665554 99999999876531 11 1
Q ss_pred eecC-CCeEEEEECCCCC-eEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 377 VKTD-SQVTSILWSEQYR-ELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 377 ~~~~-~~i~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
...| ..|.+++|+|++. +|++ ++.||.|++|++.+.+.+..+
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS--~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLAS--CSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEE--EETTSCEEEEEECC-------
T ss_pred cccccCcEeEeEEeCCCceEEEE--cCCCCcEEEEEecCCCCcccc
Confidence 1233 6899999999985 7777 889999999999988766544
No 38
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.2e-39 Score=298.39 Aligned_cols=277 Identities=19% Similarity=0.343 Sum_probs=241.0
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
...|.+++|+|++ +++++.|+.|++|+..+++....+. + |...|.+++|+|++++|+++ +.|+.|++||+.+++
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~ 98 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--G-HKLGISDVAWSSDSNLLVSA-SDDKTLKIWDVSSGK 98 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--C-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCC
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc--c-CCCceEEEEEcCCCCEEEEE-CCCCEEEEEECCCCc
Confidence 4468899999987 6677899999999999888765544 4 89999999999999999999 999999999999999
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
.+..+.+|...|.+++| ++++|++++.|+.|++||+++++ ....+..|...|.+++|+|+++++++++ |+.|++||
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 177 (312)
T 4ery_A 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177 (312)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 99999999999999999 68899999999999999999875 5667788999999999999999999999 69999999
Q ss_pred cCCCCCCCCeeee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC-C---eEEEEECCCCCe
Q psy8285 320 FRQLDAKRPQVNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS-Q---VTSILWSEQYRE 394 (507)
Q Consensus 320 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~---i~~~~~s~~~~~ 394 (507)
++++ +.+..+ ..+...+..++|+|+++.+++.+. |+.|++||+++++++..+..+. . +......+++.+
T Consensus 178 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (312)
T 4ery_A 178 TASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATL---DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251 (312)
T ss_dssp TTTC---CEEEEECCSSCCCEEEEEECTTSSEEEEEET---TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCE
T ss_pred CCCC---ceeeEEeccCCCceEEEEECCCCCEEEEEcC---CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcE
Confidence 9987 555554 346678999999999966665544 9999999999999888887652 2 233334467888
Q ss_pred EEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEe--CCCcEEEEecC
Q psy8285 395 LVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAAS--ADETISIWNCF 454 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~dg~i~iw~~~ 454 (507)
|++ |+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|+.|++|+..
T Consensus 252 l~s--g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 252 IVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEE--CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEE--ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 888 89999999999999999999999999999999999999999987 69999999864
No 39
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.4e-40 Score=333.39 Aligned_cols=387 Identities=11% Similarity=0.132 Sum_probs=286.8
Q ss_pred cccccceeeeeeccCcceeeeccccccccceeeecccCC----cceeeee-cCcc-cceeeccc--cccccccCCccCCc
Q psy8285 3 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG----KEKCHVK-TDSQ-VTSILWSE--QYRESSRSKMVNTD 74 (507)
Q Consensus 3 ~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g----~~~~~~~-~~~~-v~~~~~s~--~~~~~~~~~~~~~~ 74 (507)
..|.+.|++++|||+|++ |++++ |+.|+|||+.++ +++..+. |... |.+++|+| +++.+.+.
T Consensus 15 ~~~~~~v~~~~~spdg~~-l~~~~---~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~------ 84 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNA-IAYPC---GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG------ 84 (615)
T ss_dssp CCCTTCCCCCEEETTTTE-EEEEE---TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE------
T ss_pred CCccCceeEEEECCCCCE-EEEec---CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEe------
Confidence 579999999999999997 77776 789999999999 8888888 7788 99999999 87755432
Q ss_pred eeEeecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCch
Q psy8285 75 RYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPE 154 (507)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (507)
..|..+..|++...... .. ... ..+..+
T Consensus 85 -------~~dg~v~vw~~~~~~~~------------~~--~~~-----~~~~~~-------------------------- 112 (615)
T 1pgu_A 85 -------DESGKVIVWGWTFDKES------------NS--VEV-----NVKSEF-------------------------- 112 (615)
T ss_dssp -------ETTSEEEEEEEEEEGGG------------TE--EEE-----EEEEEE--------------------------
T ss_pred -------cCCCEEEEEeCCCCccc------------cc--ccc-----cccchh--------------------------
Confidence 12233344443211000 00 000 000000
Q ss_pred hhhcCCCcccccceeeeeeCCCC--EEEEEcC----CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCC-eEEEEe
Q psy8285 155 RILEAPSIINDFYTSGLDWGYHD--TLAVALD----TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTT-DLAVTN 227 (507)
Q Consensus 155 ~~~~~~~~~~~~~i~~~~~s~~~--~~~~~~~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 227 (507)
. .....|.+++|+|++ +++++.+ +.|++|| .++.. ..+.+ |...|.+++|+|+++ .++++
T Consensus 113 ---~----~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~--~~~~~-~~~~v~~~~~~~~~~~~l~~~- 179 (615)
T 1pgu_A 113 ---Q----VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSL--GEVSG-HSQRINACHLKQSRPMRSMTV- 179 (615)
T ss_dssp ---E----CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEE--EECCS-CSSCEEEEEECSSSSCEEEEE-
T ss_pred ---h----cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcc--eeeec-CCccEEEEEECCCCCcEEEEE-
Confidence 0 012347889999998 5555555 6888888 34433 34455 999999999999998 57777
Q ss_pred CCCCcEEEEeCCCceeEEEEeecCc---cEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceee-e---cCCCceEE
Q psy8285 228 TCTEYIDLWHEQEERLIQKLRTHMH---QVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAI-T---REGDVVCG 297 (507)
Q Consensus 228 ~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~---~~~~~v~~ 297 (507)
+.|+.|++||+.+++.+..+..|.. .|.+++| + +++|++++.|+.|++||+++++ ....+ . .|...|.+
T Consensus 180 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEE
T ss_pred eCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-EeEEecccccccCCceEE
Confidence 9999999999999999999999999 9999999 5 8899999999999999999876 44445 5 89999999
Q ss_pred EEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCC----CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC
Q psy8285 298 LKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCH----LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 372 (507)
Q Consensus 298 ~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 372 (507)
++|+ ++++|++++ |+.|++||++++ +.+..+..+ ...+.++.|. ++..+++ ++. |+.|++||+.+++
T Consensus 259 ~~~~-~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~-~~~--~g~i~~~d~~~~~ 330 (615)
T 1pgu_A 259 LSWL-DSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIIS-LSL--DGTLNFYELGHDE 330 (615)
T ss_dssp EEES-SSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEE-EET--TSCEEEEETTEEE
T ss_pred EEEc-CCCEEEEEcCCCcEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEE-EEC--CCCEEEEECCCCc
Confidence 9999 999999999 699999999987 666666655 3678888886 5645554 443 9999999998776
Q ss_pred eeeeeecC-CCeEEEE---------------------------------EC-----------------------------
Q psy8285 373 EKCHVKTD-SQVTSIL---------------------------------WS----------------------------- 389 (507)
Q Consensus 373 ~~~~~~~~-~~i~~~~---------------------------------~s----------------------------- 389 (507)
++..+..+ ..+.+++ |+
T Consensus 331 ~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 410 (615)
T 1pgu_A 331 VLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPK 410 (615)
T ss_dssp EEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEE
T ss_pred EEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCce
Confidence 66555433 2333333 31
Q ss_pred -----CC--------------------------------------CCeEEEEeccC-CCeEEEEeCCCccEE-EEeeccc
Q psy8285 390 -----EQ--------------------------------------YRELVTSHGKQ-DCSLKMWEYPRLHLI-EELKIHQ 424 (507)
Q Consensus 390 -----~~--------------------------------------~~~l~~~~g~~-d~~i~v~d~~~~~~~-~~~~~~~ 424 (507)
|+ ++++++ ++. |+.|++||+.+++.. ..+.+|.
T Consensus 411 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~d~~i~~~~~~~~~~~~~~~~~~~ 488 (615)
T 1pgu_A 411 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV--GLEEGNTIQVFKLSDLEVSFDLKTPLR 488 (615)
T ss_dssp EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE--EETTTSCEEEEETTEEEEEEECSSCCS
T ss_pred EEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE--eecCCCeEEEEECCCccccccccCCcc
Confidence 11 333444 444 677777777666554 5667799
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee--ecCCCcceEEee
Q psy8285 425 ERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR--QVGSGSSLEFAI 475 (507)
Q Consensus 425 ~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~ 475 (507)
..|++++|+|++++|++++.||.|++|++.+++...... +...+..+.|++
T Consensus 489 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp 541 (615)
T 1pgu_A 489 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 541 (615)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcC
Confidence 999999999999999999999999999999988877655 555667777777
No 40
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.3e-40 Score=301.65 Aligned_cols=284 Identities=19% Similarity=0.373 Sum_probs=237.7
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|.||.+.|++++|+|+|++ |++|+ .|+.|+|||..+++....+. |...
T Consensus 19 ~~gh~~~v~~~~~s~~~~~-l~s~~--~dg~i~iw~~~~~~~~~~~~~h~~~---------------------------- 67 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEW-LASSS--ADKLIKIWGAYDGKFEKTISGHKLG---------------------------- 67 (312)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEETTTCCEEEEECCCSSC----------------------------
T ss_pred EcccCCcEEEEEECCCCCE-EEEee--CCCeEEEEeCCCcccchhhccCCCc----------------------------
Confidence 6799999999999999997 88888 89999999999888665443 2222
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 68 -------------------------------------------------------------------------------- 67 (312)
T 4ery_A 68 -------------------------------------------------------------------------------- 67 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
|.+++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++++|+++ +.|+.|++||+
T Consensus 68 -------v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~s~-~~d~~i~iwd~ 136 (312)
T 4ery_A 68 -------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK--G-HSNYVFCCNFNPQSNLIVSG-SFDESVRIWDV 136 (312)
T ss_dssp -------EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--C-CSSCEEEEEECSSSSEEEEE-ETTSCEEEEET
T ss_pred -------eEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc--C-CCCCEEEEEEcCCCCEEEEE-eCCCcEEEEEC
Confidence 3456677765 6677899999999999988765554 3 88999999999999999999 99999999999
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
.+++.+..+..|..+|.+++| ++++|++++.||.|++||+++.+........+...+..++|+|++++|++++ |+.|
T Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 216 (312)
T 4ery_A 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216 (312)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred CCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence 999999999999999999999 6889999999999999999987644444456677899999999999999999 6999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCee--EEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCC
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVK--AIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQY 392 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~ 392 (507)
++||++++ +.+..+.+|..... ...+++.+..++++++. |+.|++||+.+++.+..+..+ ..+.+++|+|++
T Consensus 217 ~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~ 291 (312)
T 4ery_A 217 KLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291 (312)
T ss_dssp EEEETTTT---EEEEEECSSCCSSSCCCEEEECSSSCEEEECCT--TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSS
T ss_pred EEEECCCC---cEEEEEEecCCceEEEEEEEEeCCCcEEEEECC--CCEEEEEECCCchhhhhhhccCCcEEEEeecCcC
Confidence 99999987 67777777766543 33455444466777665 999999999999999988877 689999999999
Q ss_pred CeEEEEeccCCCeEEEEeCC
Q psy8285 393 RELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~ 412 (507)
+++++++.+.|+.|++|+..
T Consensus 292 ~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 292 NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SEEEEEECTTTCCEEEEECC
T ss_pred CceEEEEccCCccEEEecCC
Confidence 99998533479999999864
No 41
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.2e-39 Score=313.81 Aligned_cols=265 Identities=16% Similarity=0.280 Sum_probs=231.4
Q ss_pred eeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeec
Q psy8285 171 LDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH 250 (507)
Q Consensus 171 ~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~ 250 (507)
++|+++.+++++.|+.|++||+.+++....+. + |...|.++.|+ ++.++++ +.||.|++||+.+++.+..+.+|
T Consensus 165 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~-h~~~v~~~~~~--~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~ 238 (445)
T 2ovr_B 165 SQMRDNIIISGSTDRTLKVWNAETGECIHTLY--G-HTSTVRCMHLH--EKRVVSG-SRDATLRVWDIETGQCLHVLMGH 238 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTTEEEEEEC--C-CSSCEEEEEEE--TTEEEEE-ETTSEEEEEESSSCCEEEEEECC
T ss_pred EEecCCEEEEEeCCCeEEEEECCcCcEEEEEC--C-CCCcEEEEEec--CCEEEEE-eCCCEEEEEECCCCcEEEEEcCC
Confidence 44444447888899999999999987665544 4 89999999996 5678888 99999999999999999999999
Q ss_pred CccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCe
Q psy8285 251 MHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 251 ~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~ 329 (507)
...+.+++|+++.+++++.||.|++||+++.+ ....+..|...|.+++| +++++++++ |+.|++||++++ +.+
T Consensus 239 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~ 312 (445)
T 2ovr_B 239 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCI 312 (445)
T ss_dssp SSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEE
T ss_pred cccEEEEEECCCEEEEEcCCCEEEEEECCCCc-EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEE
Confidence 99999999999999999999999999998875 56677889999999999 788999998 699999999988 788
Q ss_pred eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec----CCCeEEEEECCCCCeEEEEeccCCCe
Q psy8285 330 VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT----DSQVTSILWSEQYRELVTSHGKQDCS 405 (507)
Q Consensus 330 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~g~~d~~ 405 (507)
..+.+|...+.++.+++ . ++++++. |+.|++||+++++++..+.. ...+.+++|+ ++++++ |+.||.
T Consensus 313 ~~~~~~~~~v~~~~~~~--~-~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s--~~~dg~ 383 (445)
T 2ovr_B 313 HTLTGHQSLTSGMELKD--N-ILVSGNA--DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVIT--SSDDGT 383 (445)
T ss_dssp EEECCCCSCEEEEEEET--T-EEEEEET--TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEE--EETTSE
T ss_pred EEEcCCcccEEEEEEeC--C-EEEEEeC--CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEE--EeCCCe
Confidence 88889999999988853 3 5555554 99999999999999988874 3679999996 578888 789999
Q ss_pred EEEEeCCCccEEEEe-----eccccceeEEEECCCCCEEEEEeCCCc----EEEEecCCC
Q psy8285 406 LKMWEYPRLHLIEEL-----KIHQERILSAVLSPDQTCVAAASADET----ISIWNCFPR 456 (507)
Q Consensus 406 i~v~d~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~s~~~dg~----i~iw~~~~~ 456 (507)
|++||+.+++.+..+ ..|.+.|++++|+|++.++++++.||+ |.+||+...
T Consensus 384 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 384 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999998888 468889999999999999999999998 999999764
No 42
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.8e-40 Score=319.17 Aligned_cols=271 Identities=11% Similarity=0.143 Sum_probs=220.7
Q ss_pred eeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee
Q psy8285 172 DWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT 249 (507)
Q Consensus 172 ~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~ 249 (507)
.|++++ +++++.|+.|++||+.+++.... +.+ |...|.+++|+|++++|+++ +.|+.|++||+.+++.+..+.+
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~-h~~~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~ 179 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREI--DQA-HVSEITKLKFFPSGEALISS-SQDMQLKIWSVKDGSNPRTLIG 179 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEE--TTS-SSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCCCEEEEC
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeee--ccc-ccCccEEEEECCCCCEEEEE-eCCCeEEEEeCCCCcCceEEcC
Confidence 455555 66677999999999988776543 344 99999999999999999999 9999999999999999999999
Q ss_pred cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeec---CCCceE---------------------EEEEcCC
Q psy8285 250 HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITR---EGDVVC---------------------GLKWSPN 303 (507)
Q Consensus 250 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~---------------------~~~~~~~ 303 (507)
|...|.+++| ++++|++++.|+.|++||+++++ ....+.. +...+. +++|+|+
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 258 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY 258 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC
Confidence 9999999999 68899999999999999999875 3334432 333444 4555789
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCCCCeeee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe-eeeeec-
Q psy8285 304 GRYLASGS-NNTVKIWDFRQLDAKRPQVNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE-KCHVKT- 379 (507)
Q Consensus 304 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~- 379 (507)
+++|++++ |+.|++||++++ +....+ ..|...|.+++|+|++..++++++. |+.|++||+++++. +..+..
T Consensus 259 ~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~ 333 (420)
T 3vl1_A 259 GKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE--NGMLAQWDLRSPECPVGEFLIN 333 (420)
T ss_dssp TEEEEEEETTSCEEEEETTTC---CEEEEECCTTSSCEEEEEECSSCTTEEEEEET--TSEEEEEETTCTTSCSEEEEES
T ss_pred CCEEEEEcCCCeEEEEECCCC---ceeEEcccccCCCceeEEEeCCCCCEEEEEeC--CCeEEEEEcCCCcCchhhhhcc
Confidence 99999999 699999999987 555444 4578899999999999757777665 99999999998754 666664
Q ss_pred C-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc---------cEEEEeeccccceeEEEECCCCC---EEEEEeCCC
Q psy8285 380 D-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL---------HLIEELKIHQERILSAVLSPDQT---CVAAASADE 446 (507)
Q Consensus 380 ~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~---------~~~~~~~~~~~~i~~~~~s~~~~---~l~s~~~dg 446 (507)
+ ..+.++.+ +++++|++ ++.|+.|++|++... .....+..|...|.+++|+|+++ .+++++.+|
T Consensus 334 ~~~~v~~~~~-~~~~~l~s--~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g 410 (420)
T 3vl1_A 334 EGTPINNVYF-AAGALFVS--SGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN 410 (420)
T ss_dssp TTSCEEEEEE-ETTEEEEE--ETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred CCCCceEEEe-CCCCEEEE--ecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence 3 56777755 57888888 889999999998763 22234557888999999999999 788888899
Q ss_pred cEEEEecCC
Q psy8285 447 TISIWNCFP 455 (507)
Q Consensus 447 ~i~iw~~~~ 455 (507)
.+.+|++.+
T Consensus 411 ~~~~~~~~~ 419 (420)
T 3vl1_A 411 FCALYNLSN 419 (420)
T ss_dssp EEEEEESCC
T ss_pred eEEEEeccC
Confidence 999999875
No 43
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.6e-39 Score=300.84 Aligned_cols=277 Identities=14% Similarity=0.220 Sum_probs=229.8
Q ss_pred cceeeeee-----CC-CC--EEEEEcCCeEEEEECCCCc-----eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCc
Q psy8285 166 FYTSGLDW-----GY-HD--TLAVALDTSVYTWNTKTNK-----TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEY 232 (507)
Q Consensus 166 ~~i~~~~~-----s~-~~--~~~~~~~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~ 232 (507)
..|.+++| ++ ++ +++++.|+.|++||+.+.+ ......+.+ |...|.+++|+|++.+++++ +.|++
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~l~s~-s~D~~ 99 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-HNHFVSDLALSQENCFAISS-SWDKT 99 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-CSSCEEEEEECSSTTEEEEE-ETTSE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-CCCceEEEEECCCCCEEEEE-cCCCc
Confidence 45888988 65 55 7778899999999997643 223445666 99999999999999999999 99999
Q ss_pred EEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceee---ecCCCceEEEEEcCCC---
Q psy8285 233 IDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAI---TREGDVVCGLKWSPNG--- 304 (507)
Q Consensus 233 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~--- 304 (507)
|++||+.+++.+..+.+|...|.+++| ++++|++++.|+.|++||+.... .... ..|...|.+++|+|++
T Consensus 100 v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC--KFSSAEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp EEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE--EEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred EEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc--eeeeecccCCCceeeeeeeccccccc
Confidence 999999999999999999999999999 68899999999999999997432 2222 3688899999999987
Q ss_pred -------CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC-CCCeee
Q psy8285 305 -------RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM-NGKEKC 375 (507)
Q Consensus 305 -------~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~ 375 (507)
.++++++ |+.|++||.+. .....+.+|...|.+++|+|+++.+ ++++. |+.|++||+. ...+..
T Consensus 178 ~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~h~~~v~~~~~s~~g~~l-~sgs~--dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDGRLKVWNTNF----QIRYTFKAHESNVNHLSISPNGKYI-ATGGK--DKKLLIWDILNLTYPQR 250 (343)
T ss_dssp SCCCSSCCEEEEEETTSEEEEEETTT----EEEEEEECCSSCEEEEEECTTSSEE-EEEET--TCEEEEEESSCCSSCSE
T ss_pred cccCCCCCEEEEEcCCCEEEEEcCCC----ceeEEEcCccccceEEEECCCCCEE-EEEcC--CCeEEEEECCCCcccce
Confidence 6899998 69999999543 5667788899999999999999654 55544 9999999994 445555
Q ss_pred eeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE--Eee-----------ccccceeEEEECCCCCEEEEE
Q psy8285 376 HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE--ELK-----------IHQERILSAVLSPDQTCVAAA 442 (507)
Q Consensus 376 ~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~--~~~-----------~~~~~i~~~~~s~~~~~l~s~ 442 (507)
.+.....+.+++|+|+++++++ + .|+.|++||+.+++... .+. +|...|.+++|+|+|++|++|
T Consensus 251 ~~~~~~~v~~v~~sp~~~~la~--~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 251 EFDAGSTINQIAFNPKLQWVAV--G-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp EEECSSCEEEEEECSSSCEEEE--E-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred eecCCCcEEEEEECCCCCEEEE--E-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 5656678999999999988876 4 47889999998765433 333 677889999999999999999
Q ss_pred eCCCcEEEEecCCC
Q psy8285 443 SADETISIWNCFPR 456 (507)
Q Consensus 443 ~~dg~i~iw~~~~~ 456 (507)
+.||.|++|++.++
T Consensus 328 ~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 328 FTDGVIRTFSFETS 341 (343)
T ss_dssp ETTSEEEEEEEEEE
T ss_pred cCCceEEEEEEEcc
Confidence 99999999998754
No 44
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-39 Score=297.86 Aligned_cols=282 Identities=20% Similarity=0.279 Sum_probs=220.9
Q ss_pred cceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEec--CCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC---
Q psy8285 166 FYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEY--PTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE--- 240 (507)
Q Consensus 166 ~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~--- 240 (507)
..|.+++|+|+.+++++.|+.|++|++..+.......+ .+ |...|.+++|+|++++|+++ +.|+.|++||+..
T Consensus 15 ~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~las~-s~D~~v~iw~~~~~~~ 92 (330)
T 2hes_X 15 EKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETA-HKKAIRSVAWRPHTSLLAAG-SFDSTVSIWAKEESAD 92 (330)
T ss_dssp SCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTC-CCSCEEEEEECTTSSEEEEE-ETTSCEEEEEC-----
T ss_pred CceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCC-ccCCEEEEEECCCCCEEEEE-eCCCcEEEEEcccCcC
Confidence 35788999999677778999999999987643333323 33 88999999999999999999 9999999999853
Q ss_pred ----ceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC---cCceeeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 241 ----ERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS---DYPTAITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 241 ----~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
.+.+..+.+|...|.+++| ++++|++++.|+.|++||++... .....+.+|...|.+++|+|++++|++++
T Consensus 93 ~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 172 (330)
T 2hes_X 93 RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS 172 (330)
T ss_dssp --CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEc
Confidence 3567788899999999999 68999999999999999995432 23456778999999999999999999999
Q ss_pred -CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCC-cEEEEEccCCCCeEEEEeCCCC--------Ceeeeee--c
Q psy8285 312 -NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP-TLLATGGGICDQTVRLWNSMNG--------KEKCHVK--T 379 (507)
Q Consensus 312 -d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~--------~~~~~~~--~ 379 (507)
|++|++||...+. .+++..+.+|...|.+++|+|++. .++++++. |++|++||++.+ .+...+. +
T Consensus 173 ~D~~i~iW~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~--D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h 249 (330)
T 2hes_X 173 YDDTVRIWKDYDDD-WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD--DSTVRVWKYMGDDEDDQQEWVCEAILPDVH 249 (330)
T ss_dssp TTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCSSSSCEEEEEET--TSCEEEEEEEEECTTSCEEEEEEEECCSCC
T ss_pred CCCeEEEEECCCCC-eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC--CCeEEEEEecCCCccccceeEEeeeccccc
Confidence 6999999987531 135677889999999999999832 45666654 999999998754 2333443 3
Q ss_pred CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc--EEEE-eecccc-ceeEEEECC--CCCEEEEEeCCCcEEEEec
Q psy8285 380 DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH--LIEE-LKIHQE-RILSAVLSP--DQTCVAAASADETISIWNC 453 (507)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~--~~~~-~~~~~~-~i~~~~~s~--~~~~l~s~~~dg~i~iw~~ 453 (507)
...|.+++|++++ +|++ ++.||.|++||..+++ .+.. +.+|.. .|.+++|+| ++++|++++.||.|++|++
T Consensus 250 ~~~v~~v~~s~~~-~l~s--~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 250 KRQVYNVAWGFNG-LIAS--VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp SSCEEEEEECTTS-CEEE--EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ccceEEEEEcCCC-EEEE--EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 3689999999765 7777 7789999999998763 3333 356876 899999999 7899999999999999998
Q ss_pred CC
Q psy8285 454 FP 455 (507)
Q Consensus 454 ~~ 455 (507)
.+
T Consensus 327 ~~ 328 (330)
T 2hes_X 327 EK 328 (330)
T ss_dssp --
T ss_pred cc
Confidence 65
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-39 Score=305.03 Aligned_cols=238 Identities=19% Similarity=0.384 Sum_probs=198.3
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
..+|.+++|+|++ +++++.|+.|++||+.+++....+ .+ |...|.+++|+|++++|+++ +.|+.|++||+.+++
T Consensus 123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~--~~-h~~~v~~~~~~p~~~~l~s~-s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL--QG-HEQDIYSLDYFPSGDKLVSG-SGDRTVRIWDLRTGQ 198 (393)
T ss_dssp CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CC-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTE
T ss_pred ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--cc-CCCCEEEEEEcCCCCEEEEe-cCCCcEEEEECCCCe
Confidence 3457889999987 666789999999999988765544 45 99999999999999999999 999999999999998
Q ss_pred eEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceee-------ecCCCceEEEEEcCCCCEEEEEe-
Q psy8285 243 LIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAI-------TREGDVVCGLKWSPNGRYLASGS- 311 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~- 311 (507)
....+. +...+.+++| ++++|++++.|+.|++||++++. ....+ .+|...|.+++|+|++++|++++
T Consensus 199 ~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 276 (393)
T 1erj_A 199 CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276 (393)
T ss_dssp EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 877775 5677888888 57899999999999999998865 22222 57889999999999999999999
Q ss_pred CCcEEEEEcCCCCC---------CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-C
Q psy8285 312 NNTVKIWDFRQLDA---------KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-S 381 (507)
Q Consensus 312 d~~i~i~d~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~ 381 (507)
|+.|++||++.... ..+...+.+|...|.+++|+|++..++ +++. |+.|++||+.+++++..+..| .
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sgs~--D~~v~iwd~~~~~~~~~l~~h~~ 353 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSK--DRGVLFWDKKSGNPLLMLQGHRN 353 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEE-EEET--TSEEEEEETTTCCEEEEEECCSS
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEE-EEeC--CCeEEEEECCCCeEEEEECCCCC
Confidence 69999999986421 133456778999999999999986554 5544 999999999999999988877 6
Q ss_pred CeEEEEECC------CCCeEEEEeccCCCeEEEEeCCC
Q psy8285 382 QVTSILWSE------QYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 382 ~i~~~~~s~------~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
.|.+++|++ ++++|++ |+.||.|++|++..
T Consensus 354 ~v~~v~~~~~~~~~p~~~~l~s--gs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 354 SVISVAVANGSSLGPEYNVFAT--GSGDCKARIWKYKK 389 (393)
T ss_dssp CEEEEEECSSCTTCTTCEEEEE--EETTSEEEEEEEEE
T ss_pred CEEEEEecCCcCcCCCCCEEEE--ECCCCcEEECcccc
Confidence 899999886 6788888 88999999999754
No 46
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.9e-39 Score=300.59 Aligned_cols=232 Identities=21% Similarity=0.346 Sum_probs=188.2
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.|.+++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++++|+++ +.|+.|++||+... ..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~--~-h~~~v~~v~~sp~~~~l~s~-~~d~~i~~wd~~~~-~~ 152 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV--G-HQSEVYSVAFSPDNRQILSA-GAEREIKLWNILGE-CK 152 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE--C-CCSCEEEEEECSSTTEEEEE-ETTSCEEEEESSSC-EE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc--C-CCCcEEEEEECCCCCEEEEE-cCCCEEEEEeccCC-ce
Confidence 36678888877 6677899999999999988665544 4 99999999999999999999 89999999999843 33
Q ss_pred EEEe---ecCccEEEEEee--C----------CEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEE
Q psy8285 245 QKLR---THMHQVIAMCWN--G----------NLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 245 ~~~~---~~~~~v~~~~~~--~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 309 (507)
.... .|...|.+++|+ + .+|++++.|+.|++||... .....+..|...|.+++|+|++++|++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEECCCCCEEEE
Confidence 3333 688899999993 2 6899999999999999543 345677889999999999999999999
Q ss_pred Ee-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee--eee--------
Q psy8285 310 GS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC--HVK-------- 378 (507)
Q Consensus 310 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~-------- 378 (507)
++ |+.|++||++... .....+ .+...|.+++|+|++ .+++++. |+.|++||+.+++... .+.
T Consensus 231 gs~dg~v~iwd~~~~~--~~~~~~-~~~~~v~~v~~sp~~-~~la~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 303 (343)
T 2xzm_R 231 GGKDKKLLIWDILNLT--YPQREF-DAGSTINQIAFNPKL-QWVAVGT---DQGVKIFNLMTQSKAPVCTIEAEPITKAE 303 (343)
T ss_dssp EETTCEEEEEESSCCS--SCSEEE-ECSSCEEEEEECSSS-CEEEEEE---SSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred EcCCCeEEEEECCCCc--ccceee-cCCCcEEEEEECCCC-CEEEEEC---CCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence 99 6999999995441 233333 355679999999998 5666665 8899999998876543 332
Q ss_pred ---cC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 379 ---TD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 379 ---~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
.+ ..+.+++|+|+|++|++ |+.||.|++|++.++
T Consensus 304 ~~~~~~~~v~~~~~sp~g~~l~s--g~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 304 GQKGKNPQCTSLAWNALGKKLFA--GFTDGVIRTFSFETS 341 (343)
T ss_dssp TBCCSCCCEEEEEECSSSCCEEE--EETTSEEEEEEEEEE
T ss_pred hhcCCCCceEEEEECCCCCeEEE--ecCCceEEEEEEEcc
Confidence 22 57999999999999999 889999999998654
No 47
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-38 Score=332.60 Aligned_cols=342 Identities=19% Similarity=0.247 Sum_probs=273.8
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|++|.+.|++++|||+|++ ||+|+ .|+.|+|||+.+++++.++. +...|.++.
T Consensus 9 ~~~h~~~v~~i~~sp~~~~-la~~~--~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~----------------------- 62 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPW-VLTTL--YSGRVEIWNYETQVEVRSIQVTETPVRAGK----------------------- 62 (814)
T ss_dssp EEEECSCEEEEEECSSSSE-EEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEE-----------------------
T ss_pred eecCCCceEEEEECCCCCE-EEEEe--CCCEEEEEECCCCceEEEEecCCCcEEEEE-----------------------
Confidence 6799999999999999997 78887 79999999999998877665 444444444
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 63 -------------------------------------------------------------------------------- 62 (814)
T 3mkq_A 63 -------------------------------------------------------------------------------- 62 (814)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
|+|++ +++++.|+.|++||+.+++...... + |...|++++|+|++++|+++ +.||.|++||+
T Consensus 63 ------------~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~-~~~~v~~~~~s~~~~~l~~~-~~dg~i~vw~~ 126 (814)
T 3mkq_A 63 ------------FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--A-HPDYIRSIAVHPTKPYVLSG-SDDLTVKLWNW 126 (814)
T ss_dssp ------------EEGGGTEEEEEETTSEEEEEETTTCCEEEEEE--C-CSSCEEEEEECSSSSEEEEE-ETTSEEEEEEG
T ss_pred ------------EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--c-CCCCEEEEEEeCCCCEEEEE-cCCCEEEEEEC
Confidence 44444 6667799999999999988766554 3 88999999999999999999 99999999999
Q ss_pred CCc-eeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC--CCCEEEEEe-
Q psy8285 239 QEE-RLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP--NGRYLASGS- 311 (507)
Q Consensus 239 ~~~-~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~- 311 (507)
.++ .....+.+|...|.+++| +++.|++++.||.|++||+.+..........+...+.+++|+| +++++++++
T Consensus 127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 206 (814)
T 3mkq_A 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (814)
T ss_dssp GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence 987 777888899999999999 4679999999999999999887644444444558899999999 999999999
Q ss_pred CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECC
Q psy8285 312 NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSE 390 (507)
Q Consensus 312 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~ 390 (507)
|+.|++||++++ +.+..+.+|...|.+++|+|+++.+++ ++. |+.|++||+.+++.+..+..+ ..+.+++|+|
T Consensus 207 dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 280 (814)
T 3mkq_A 207 DLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPTLPIIIS-GSE--DGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (814)
T ss_dssp TSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSSEEEE-EET--TSCEEEEETTTCSEEEEECCSSSSEEEEEECT
T ss_pred CCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEE-EeC--CCeEEEEECCCCcEEEEeecCCCcEEEEEEcc
Confidence 599999999987 778888889999999999999965554 443 999999999999998888776 7899999999
Q ss_pred CCCeE-EEEeccCCCeEEEEeCCCccEEEE-------------------------------------------eeccccc
Q psy8285 391 QYREL-VTSHGKQDCSLKMWEYPRLHLIEE-------------------------------------------LKIHQER 426 (507)
Q Consensus 391 ~~~~l-~~~~g~~d~~i~v~d~~~~~~~~~-------------------------------------------~~~~~~~ 426 (507)
+++.+ ++ .+.++.+.+|++........ +..+...
T Consensus 281 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (814)
T 3mkq_A 281 TGRKNYIA--SGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVF 358 (814)
T ss_dssp TCGGGEEE--EEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSC
T ss_pred CCCceEEE--EEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccC
Confidence 99853 33 23477788888754322111 1223446
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEeeccC
Q psy8285 427 ILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQ 478 (507)
Q Consensus 427 i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (507)
+.+++|+|+|+++++++ |+.+.+|++...... ..+.+..+.|+++..
T Consensus 359 ~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~----~~~~i~~~~~spdg~ 405 (814)
T 3mkq_A 359 PQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK----AFGKCQDFVWGPDSN 405 (814)
T ss_dssp CSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE----EEEECSEEEECTTSS
T ss_pred CceeEECCCCCEEEEec-CCEEEEEECcccccc----CCCceEEEEEeCCCC
Confidence 78999999999999988 899999997543221 223344555555443
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-38 Score=310.25 Aligned_cols=267 Identities=17% Similarity=0.271 Sum_probs=225.5
Q ss_pred eeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEc--cCCCeEEEEeCCCCcEEEEeCCCcee--
Q psy8285 169 SGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWK--PRTTDLAVTNTCTEYIDLWHEQEERL-- 243 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~dg~i~iwd~~~~~~-- 243 (507)
.+++|++++ +++++.|+.|++||+.+++....+ .+ |...|.+++|+ +++.+++++ +.||.|++||+.++..
T Consensus 166 ~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~-h~~~v~~l~~~~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 166 WALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVF--EG-HNSTVRCLDIVEYKNIKYIVTG-SRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp EEEEECSTTEEEEEETTSCEEEEETTTTEEEEEE--CC-CSSCEEEEEEEESSSCEEEEEE-ETTSCEEEEECCCCCCC-
T ss_pred EEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEE--CC-CCCccEEEEEecCCCCCEEEEE-cCCCcEEEeeCCCCcccc
Confidence 345555655 677889999999999998865554 44 89999999998 467888888 9999999999987652
Q ss_pred ---------------------EEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC
Q psy8285 244 ---------------------IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP 302 (507)
Q Consensus 244 ---------------------~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 302 (507)
+..+.+|...+.++..+++++++++.|+.|++||+++.+ ....+.+|...|.+++|+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~ 320 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDH 320 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEET
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCEEEEEEcC
Confidence 556778999999999999999999999999999999875 5667788999999999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 381 (507)
+++++++++ |+.|++||++++ +.+..+.+|...|.++.|++ ..+++++. |+.|++||+.+++.........
T Consensus 321 ~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~---~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~ 392 (464)
T 3v7d_B 321 ERKRCISASMDTTIRIWDLENG---ELMYTLQGHTALVGLLRLSD---KFLVSAAA--DGSIRGWDANDYSRKFSYHHTN 392 (464)
T ss_dssp TTTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECS---SEEEEEET--TSEEEEEETTTCCEEEEEECTT
T ss_pred CCCEEEEEeCCCcEEEEECCCC---cEEEEEeCCCCcEEEEEEcC---CEEEEEeC--CCcEEEEECCCCceeeeecCCC
Confidence 999999999 699999999988 78889999999999999984 35555554 9999999999998887777777
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEE-eeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEE-LKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
.+..++|+|+++++++ |+ ||.|++||+.+++.+.. +..|...|.+++|+ +..++++++.||.+.+|-
T Consensus 393 ~~~~~~~~~~~~~l~~--~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 393 LSAITTFYVSDNILVS--GS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CCCEEEEEECSSEEEE--EE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CccEEEEEeCCCEEEE--ec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 8888999999999998 66 89999999999999886 66789999999997 344555666777655543
No 49
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-38 Score=295.10 Aligned_cols=285 Identities=13% Similarity=0.149 Sum_probs=249.3
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
...|.+++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++++|+++ +.||.|++||+.+++
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~ 107 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD--G-HTGTIWSIDVDCFTKYCVTG-SADYSIKLWDVSNGQ 107 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC--C-CSSCEEEEEECTTSSEEEEE-ETTTEEEEEETTTCC
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh--h-cCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCc
Confidence 4458899999987 6666789999999999888765544 4 89999999999999999999 899999999999999
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecC-----CeEEEEECCCCCc----------CceeeecCCC--ceEEEEEcCC
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIG-----GNILHYDVRTHSD----------YPTAITREGD--VVCGLKWSPN 303 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~d-----g~i~i~d~~~~~~----------~~~~~~~~~~--~v~~~~~~~~ 303 (507)
.+..+. +...+.+++| +++++++++.+ +.|.+||+..... ....+..|.. .+.+++|+|+
T Consensus 108 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (369)
T 3zwl_B 108 CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK 186 (369)
T ss_dssp EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence 988887 8899999999 78999999998 9999999987642 2334445555 8999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCC
Q psy8285 304 GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQ 382 (507)
Q Consensus 304 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 382 (507)
+++|++++ |+.|++||+++. ...+..+..|...|.+++|+|++..+++.+. |+.|++||+++++.+..+.....
T Consensus 187 ~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~ 261 (369)
T 3zwl_B 187 GKYIIAGHKDGKISKYDVSNN--YEYVDSIDLHEKSISDMQFSPDLTYFITSSR---DTNSFLVDVSTLQVLKKYETDCP 261 (369)
T ss_dssp GCEEEEEETTSEEEEEETTTT--TEEEEEEECCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTCCEEEEEECSSC
T ss_pred CCEEEEEcCCCEEEEEECCCC--cEeEEEEecCCCceeEEEECCCCCEEEEecC---CceEEEEECCCCceeeeecCCCC
Confidence 99999998 699999999872 1677788889999999999999866655444 99999999999999999998889
Q ss_pred eEEEEECCCCCeEEEEeccCCC--------------eEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcE
Q psy8285 383 VTSILWSEQYRELVTSHGKQDC--------------SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETI 448 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~--------------~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i 448 (507)
+..++|+|+++++++ ++.++ .+++||..+++++..+.+|...|++++|+|++++|++++.||.|
T Consensus 262 ~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 339 (369)
T 3zwl_B 262 LNTAVITPLKEFIIL--GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFI 339 (369)
T ss_dssp EEEEEECSSSSEEEE--EECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceeEEecCCCceEEE--eecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeE
Confidence 999999999999999 55666 89999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcccc
Q psy8285 449 SIWNCFPRDKKRK 461 (507)
Q Consensus 449 ~iw~~~~~~~~~~ 461 (507)
++|++.++.....
T Consensus 340 ~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 340 RLHHFEKSYFDFK 352 (369)
T ss_dssp EEEEECHHHHTCC
T ss_pred EEEECccccchhH
Confidence 9999987654443
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-40 Score=320.11 Aligned_cols=263 Identities=9% Similarity=0.077 Sum_probs=196.7
Q ss_pred EEEEEcCCeEEEEECCCCcee---------EEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-eEEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQ---------LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-LIQKL 247 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-~~~~~ 247 (507)
+++++.|+.|++||+.+++.. ....+.+ |...|++++|++++ .|+++ +.||+|++||+.+++ +...+
T Consensus 228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~-h~~~v~sv~~s~~~-~lasg-s~DgtV~lWD~~~~~~~~~~~ 304 (524)
T 2j04_B 228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL-ADSLITTFDFLSPT-TVVCG-FKNGFVAEFDLTDPEVPSFYD 304 (524)
T ss_dssp EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC-TTTCEEEEEESSSS-EEEEE-ETTSEEEEEETTBCSSCSEEE
T ss_pred EEEEecCCeEEEEEcCCCccccccceeecCceEEEEc-CCCCEEEEEecCCC-eEEEE-eCCCEEEEEECCCCCCceEEe
Confidence 555789999999999876421 1234556 88999999999864 78888 999999999999763 45668
Q ss_pred eecCccEEEE--Ee--eC-CEEEEEecCCeEEEEECCCCCcCceeeecCCC--ceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 248 RTHMHQVIAM--CW--NG-NLLSCGTIGGNILHYDVRTHSDYPTAITREGD--VVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 248 ~~~~~~v~~~--~~--~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
.+|...|.++ .| ++ .+|++++.|++|++||+++.+ ....+.+|.. .|.+++|+|+++.+++++ |++|++||
T Consensus 305 ~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~-~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd 383 (524)
T 2j04_B 305 QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA-TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVP 383 (524)
T ss_dssp ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH-HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEE
T ss_pred ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC-cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEE
Confidence 8999999999 45 45 799999999999999998765 3334444442 478999999999999988 59999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec----C--CCeEEEEECCCCC
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT----D--SQVTSILWSEQYR 393 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~--~~i~~~~~s~~~~ 393 (507)
++.+ ..+..+.+|.+.|++++|+|+++.++ +++. |++|++||+..+ .+..... . ..+.+++|+|+++
T Consensus 384 ~~~~---~~~~~l~gH~~~V~sva~Sp~g~~l~-Sgs~--Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~ 456 (524)
T 2j04_B 384 SRAA---FAVHPLVSRETTITAIGVSRLHPMVL-AGSA--DGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDD 456 (524)
T ss_dssp TTCT---TCCEEEEECSSCEEEEECCSSCCBCE-EEET--TTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSC
T ss_pred Cccc---ccceeeecCCCceEEEEeCCCCCeEE-EEEC--CCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCC
Confidence 9987 66677888999999999999997555 4444 999999998654 3322211 1 2467999999998
Q ss_pred eEEEEeccCCCeEEEEeCC-CccEEEEeeccccceeEEEECCCCC---EEEEEeCCCcEEEEecCCC
Q psy8285 394 ELVTSHGKQDCSLKMWEYP-RLHLIEELKIHQERILSAVLSPDQT---CVAAASADETISIWNCFPR 456 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~---~l~s~~~dg~i~iw~~~~~ 456 (507)
.+.. .. ...+|+.. ++..+..+.+|...|.+++|+|+++ ++++|+.||.|+||++.-.
T Consensus 457 ~~~~---~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 457 KYRI---DS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp EEEE---CC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred eEEc---cC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 5543 22 23344433 4677888999999999999999954 9999999999999998643
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-39 Score=309.71 Aligned_cols=286 Identities=16% Similarity=0.315 Sum_probs=242.9
Q ss_pred ceeeeeeCCCC--EEEE-----------EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcE
Q psy8285 167 YTSGLDWGYHD--TLAV-----------ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYI 233 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~-----------~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i 233 (507)
.+.+++|+|++ +++. +.|+.|++|++.+++..+...... |...|.+++|+|++++|+++ +.||.|
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~dg~v 91 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ-VDSKFNDLDWSHNNKIIAGA-LDNGSL 91 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC-CSSCEEEEEECSSSSCEEEE-ESSSCE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe-cCCceEEEEECCCCCeEEEE-ccCCeE
Confidence 46789999986 4554 478899999998876432222223 78899999999999999999 899999
Q ss_pred EEEeCCC----ceeEEEEeecCccEEEEEe--e-CCEEEEEecCCeEEEEECCCCC------cCc--eeeecCCCceEEE
Q psy8285 234 DLWHEQE----ERLIQKLRTHMHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHS------DYP--TAITREGDVVCGL 298 (507)
Q Consensus 234 ~iwd~~~----~~~~~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~------~~~--~~~~~~~~~v~~~ 298 (507)
++||+.+ .+.+..+..|...|.+++| + +++|++++.|+.|++||+++.+ ... .....|...|.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999987 4578888899999999999 4 7899999999999999999865 221 2245788899999
Q ss_pred EEcCC-CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCC------CCCeeEEEEccCCCcEEEEEccCCCC---eEEEEe
Q psy8285 299 KWSPN-GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCH------LSAVKAIAWCPWEPTLLATGGGICDQ---TVRLWN 367 (507)
Q Consensus 299 ~~~~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~d~---~i~i~d 367 (507)
+|+|+ +.++++++ |+.|++||++.+ +.+..+..+ ...+.+++|+|++..++++++. |+ .|++||
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~~~~i~~~d 246 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAK---KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG--SDNDPSILIWD 246 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTT---EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC--CSSSCCCCEEE
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCC---CcceEEeccccccccCCceEEEEECCCCCCEEEEEEC--CCCCceEEEEe
Confidence 99999 78899988 699999999987 666666655 7889999999998777777765 77 999999
Q ss_pred CCCC-Ceeeeee-cC-CCeEEEEECC-CCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCC-CEEEEE
Q psy8285 368 SMNG-KEKCHVK-TD-SQVTSILWSE-QYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQ-TCVAAA 442 (507)
Q Consensus 368 ~~~~-~~~~~~~-~~-~~i~~~~~s~-~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~ 442 (507)
++++ +++..+. .+ ..+.+++|+| ++++|++ ++.|+.|++||+++++++..+.+|...|.+++|+|++ .+|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s--~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS--SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACA 324 (416)
T ss_dssp TTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE--EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEEC
T ss_pred CCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE--EeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEE
Confidence 9986 5666676 44 7899999999 8999999 7899999999999999999999999999999999998 899999
Q ss_pred eCCCcEEEEecCCCCcccc
Q psy8285 443 SADETISIWNCFPRDKKRK 461 (507)
Q Consensus 443 ~~dg~i~iw~~~~~~~~~~ 461 (507)
+.|+.|++|++.+......
T Consensus 325 ~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 325 SFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp CSSSEEEEEESCCCCCSSC
T ss_pred ecCCcEEEEEccCCCCCcc
Confidence 9999999999988765443
No 52
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-38 Score=290.55 Aligned_cols=238 Identities=19% Similarity=0.339 Sum_probs=180.9
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCc-----eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNK-----TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
|.+++|+|++ +++++.|+.|++|+..... ......+.+ |...|.+++|+|++++|+++ +.|+.|++||+..
T Consensus 61 v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~g~~las~-s~D~~v~iwd~~~ 138 (330)
T 2hes_X 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG-HENEVKGVAWSNDGYYLATC-SRDKSVWIWETDE 138 (330)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEE-ETTSCEEEEECCT
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC-CCCcEEEEEECCCCCEEEEE-eCCCEEEEEeccC
Confidence 5678888877 6667799999999985421 223445566 99999999999999999999 9999999999943
Q ss_pred ----ceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC-cCceeeecCCCceEEEEEcCC--CCEEEEEe
Q psy8285 241 ----ERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS-DYPTAITREGDVVCGLKWSPN--GRYLASGS 311 (507)
Q Consensus 241 ----~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~ 311 (507)
.+++..+.+|...|.+++| ++.+|++++.|+.|++||..+.. .....+.+|...|.+++|+|+ +.+|++++
T Consensus 139 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 218 (330)
T 2hes_X 139 SGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS 218 (330)
T ss_dssp TCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE
T ss_pred CCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe
Confidence 2567788899999999999 68899999999999999987652 245677899999999999998 67899998
Q ss_pred -CCcEEEEEcCCCCCC-----CCeeeecC-CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--eeeee-ecC-
Q psy8285 312 -NNTVKIWDFRQLDAK-----RPQVNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EKCHV-KTD- 380 (507)
Q Consensus 312 -d~~i~i~d~~~~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~-~~~- 380 (507)
|++|++||++..... .....+.. |...|.+++|++++ .+ ++++. |+.|++||..+++ ..... ..+
T Consensus 219 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l-~s~~~--dg~v~iw~~~~~~~~~~~~~~~~h~ 294 (330)
T 2hes_X 219 DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LI-ASVGA--DGVLAVYEEVDGEWKVFAKRALCHG 294 (330)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CE-EEEET--TSCEEEEEEETTEEEEEEEESCTTT
T ss_pred CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EE-EEEeC--CCEEEEEEcCCCceEEEeccccccc
Confidence 699999999764211 12233333 88999999999765 44 45544 9999999998774 23222 334
Q ss_pred C-CeEEEEECC--CCCeEEEEeccCCCeEEEEeCCC
Q psy8285 381 S-QVTSILWSE--QYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 381 ~-~i~~~~~s~--~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
. .+.+++|+| ++++|++ |+.||.|++||+..
T Consensus 295 ~~~v~~v~~~~~~~~~~las--~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILAT--GGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEC-----CCEEE--EETTSEEEEEEC--
T ss_pred cceEEEEEEecCCCceEEEE--ecCCCcEEEEEecc
Confidence 3 799999999 6888998 88999999999864
No 53
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.9e-38 Score=297.76 Aligned_cols=281 Identities=15% Similarity=0.192 Sum_probs=241.5
Q ss_pred ccceeeeeeCCCCEEEEEcCCeEEEEECCCCc----eeEEEecCCCCCCceEEEEEccC----C---CeEEEEeCCCCcE
Q psy8285 165 DFYTSGLDWGYHDTLAVALDTSVYTWNTKTNK----TQLLVEYPTYDNAYISCVAWKPR----T---TDLAVTNTCTEYI 233 (507)
Q Consensus 165 ~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~----~---~~l~~~~~~dg~i 233 (507)
...|.+++|+|+.+++++.|+.|++|++.+++ ......+.+ |...|.+++|+|+ + ++|+++ +.||.|
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~-~~dg~i 93 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATT-SFSGDL 93 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEE-ETTSCE
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEE-cCCCCE
Confidence 44688999999558888899999999999887 112233334 8999999999999 8 899998 899999
Q ss_pred EEEeCCCcee-----EEEEeec-----CccEEEEEee------CCE-EEEEecCCeEEEEECCC------CCcCce----
Q psy8285 234 DLWHEQEERL-----IQKLRTH-----MHQVIAMCWN------GNL-LSCGTIGGNILHYDVRT------HSDYPT---- 286 (507)
Q Consensus 234 ~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~------~~~-l~~~~~dg~i~i~d~~~------~~~~~~---- 286 (507)
++||+.+++. +..+..| ...|.+++|. ++. |++++.||.|++||+++ .+ ...
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 172 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-TLNWSPT 172 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT-TTCCCCE
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc-eeeccCc
Confidence 9999998876 8888888 5899999997 778 99999999999999987 44 233
Q ss_pred -ee-------ecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecC---C---CCCeeEEEEccCCCcE
Q psy8285 287 -AI-------TREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQC---H---LSAVKAIAWCPWEPTL 351 (507)
Q Consensus 287 -~~-------~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~ 351 (507)
.+ ..|...|.+++|+|++ ++++++ |+.|++||++++ +.+..+.. | ...|.+++|+|++..+
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l 248 (397)
T 1sq9_A 173 LELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKFSPQGSLL 248 (397)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT---EEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred ceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC---ceeEEEeccccccccCCccceEEECCCCCEE
Confidence 44 4478899999999999 999988 699999999987 77788887 8 9999999999998655
Q ss_pred EEEEccCCC---CeEEEEeCCCCCeeeeeec-------------C-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 352 LATGGGICD---QTVRLWNSMNGKEKCHVKT-------------D-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 352 ~~~~~~~~d---~~i~i~d~~~~~~~~~~~~-------------~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
++.+. | +.|++||+++++.+..+.. + ..+.+++|+|++++|++ ++.|+.|++||+.++
T Consensus 249 ~~~~~---d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 249 AIAHD---SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS--AGWDGKLRFWDVKTK 323 (397)
T ss_dssp EEEEE---ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE--EETTSEEEEEETTTT
T ss_pred EEEec---CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE--EeCCCeEEEEEcCCC
Confidence 55443 8 9999999999999888875 4 78999999999999999 789999999999999
Q ss_pred cEEEEee------cc---------------ccceeEEEECCCC----------CEEEEEeCCCcEEEEecCCCC
Q psy8285 415 HLIEELK------IH---------------QERILSAVLSPDQ----------TCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 415 ~~~~~~~------~~---------------~~~i~~~~~s~~~----------~~l~s~~~dg~i~iw~~~~~~ 457 (507)
+++..+. +| ...|++++|+|++ ++|++++.||.|++|++.+++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9999999 88 8999999999998 799999999999999998753
No 54
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2e-37 Score=316.64 Aligned_cols=279 Identities=18% Similarity=0.305 Sum_probs=236.3
Q ss_pred ccceeeeeeCCCC---EEEEEcCCeEEEEECCCCce---eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 165 DFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKT---QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 165 ~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
...|.+++|+|++ +++++.|+.|++|++.+... .....+.+ |...|.+++|+|++++|+++ +.||.|++||+
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~sg-s~Dg~v~vwd~ 459 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG-HSHFVEDVVLSSDGQFALSG-SWDGELRLWDL 459 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEET
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC-CCCcEEEEEECCCCCEEEEE-eCCCcEEEEEC
Confidence 4458999999864 66788999999999976432 22344556 99999999999999999999 99999999999
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC--ceeeecCCCceEEEEEcCCC--CEEEEEe-
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY--PTAITREGDVVCGLKWSPNG--RYLASGS- 311 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~--~~l~~~~- 311 (507)
.+++.+..+.+|...|.+++| ++++|++++.|++|++||....... .....+|...|.+++|+|++ ..+++++
T Consensus 460 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 539 (694)
T 3dm0_A 460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539 (694)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence 999999999999999999999 6889999999999999998654311 11124688899999999987 5788888
Q ss_pred CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCC
Q psy8285 312 NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQ 391 (507)
Q Consensus 312 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~ 391 (507)
|+.|++||++.. +....+.+|.+.|++++|+|++. ++++++. |+.|++||+++++.+..+..+..+.+++|+|+
T Consensus 540 d~~v~vwd~~~~---~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~--Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~ 613 (694)
T 3dm0_A 540 DKTVKVWNLSNC---KLRSTLAGHTGYVSTVAVSPDGS-LCASGGK--DGVVLLWDLAEGKKLYSLEANSVIHALCFSPN 613 (694)
T ss_dssp TSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEET--TSBCEEEETTTTEEEECCBCSSCEEEEEECSS
T ss_pred CCeEEEEECCCC---cEEEEEcCCCCCEEEEEEeCCCC-EEEEEeC--CCeEEEEECCCCceEEEecCCCcEEEEEEcCC
Confidence 699999999987 77888899999999999999985 5555554 99999999999999988888889999999999
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccEEEEeeccc-------------------cceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ-------------------ERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~-------------------~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+.++++ + .++.|++||+.+++.+..+..+. ..+++++|+|+|++|++|+.||.|++|+
T Consensus 614 ~~~l~~--~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 614 RYWLCA--A-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp SSEEEE--E-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CcEEEE--E-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence 988887 4 36679999999998887765321 1378899999999999999999999999
Q ss_pred cC
Q psy8285 453 CF 454 (507)
Q Consensus 453 ~~ 454 (507)
+.
T Consensus 691 i~ 692 (694)
T 3dm0_A 691 IG 692 (694)
T ss_dssp C-
T ss_pred cc
Confidence 85
No 55
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.8e-37 Score=290.88 Aligned_cols=277 Identities=16% Similarity=0.186 Sum_probs=229.7
Q ss_pred ccceeeeeeCCCC---EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc-CCCeEEEEeCCCCcEEEEeCCC
Q psy8285 165 DFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP-RTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 165 ~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
...|.+++|+|++ +++++.|+.|++||+.+++........+ |...|.+++|+| ++.+|+++ +.|+.|++||+.+
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~ 150 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMG-PGDAITGMKFNQFNTNQLFVS-SIRGATTLRDFSG 150 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCS-TTCBEEEEEEETTEEEEEEEE-ETTTEEEEEETTS
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCC-cCCceeEEEeCCCCCCEEEEE-eCCCEEEEEECCC
Confidence 3458899999986 6667799999999999988887777666 999999999999 67888888 9999999999986
Q ss_pred ceeEEEEee---cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC-EEEEEe-CC
Q psy8285 241 ERLIQKLRT---HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR-YLASGS-NN 313 (507)
Q Consensus 241 ~~~~~~~~~---~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~ 313 (507)
+.+..+.. |...|.+++| ++++|++++.|+.|++||++. .....+..|...|.+++|+|+++ ++++++ |+
T Consensus 151 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 227 (383)
T 3ei3_B 151 -SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA 227 (383)
T ss_dssp -CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--CEEEEEECSSSCEEEEEECSSCTTEEEEEETTS
T ss_pred -CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC
Confidence 55555554 3478999999 689999999999999999953 35677888999999999999999 899988 69
Q ss_pred cEEEEEcCCCCCC-CCeeeecCCCCCeeEEEEcc-CCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-----------
Q psy8285 314 TVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCP-WEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----------- 380 (507)
Q Consensus 314 ~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----------- 380 (507)
.|++||+++.... ..+..+ +|...|.+++|+| ++..+++ ++. |+.|++||+++++....+..+
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~-~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 303 (383)
T 3ei3_B 228 TVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLT-TDQ--RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPI 303 (383)
T ss_dssp EEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEE-EES--SSEEEEEETTBTTSCSEEEECCBCCCTTSCCC
T ss_pred EEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEE-EcC--CCcEEEEECCCCccccccccccccccccccce
Confidence 9999999985332 334444 6999999999999 8865554 443 999999999988776655432
Q ss_pred -------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec--cccceeEEEECCCCCEEEEEeCCCcEEEE
Q psy8285 381 -------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI--HQERILSAVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 381 -------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 451 (507)
..+..++|+|++++ + ++.|+.|++||+.+++.+..+.+ |...+..++|+|++++|++++ |+.|++|
T Consensus 304 ~~~~~p~~~~~~~~~s~dg~~--s--~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw 378 (383)
T 3ei3_B 304 KATWHPMYDLIVAGRYPDDQL--L--LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIW 378 (383)
T ss_dssp CCEECSSSSEEEEECBCCTTT--C--TTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEE
T ss_pred EEeccCCCCceEEEecCCccc--c--cCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEE
Confidence 24555777788777 4 78999999999999999999987 456788889999999999997 9999999
Q ss_pred ecCC
Q psy8285 452 NCFP 455 (507)
Q Consensus 452 ~~~~ 455 (507)
|+.+
T Consensus 379 ~~~~ 382 (383)
T 3ei3_B 379 NRED 382 (383)
T ss_dssp ECC-
T ss_pred ecCC
Confidence 9875
No 56
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4e-38 Score=328.71 Aligned_cols=380 Identities=13% Similarity=0.174 Sum_probs=293.8
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
+.+|.+.|++++|+|+|++ |++|+ .|+.|+|||+.+++++.++. |...|.+++|+|+++.+.+.
T Consensus 51 ~~~~~~~v~~~~~s~~~~~-l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~------------ 115 (814)
T 3mkq_A 51 IQVTETPVRAGKFIARKNW-IIVGS--DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG------------ 115 (814)
T ss_dssp EECCSSCEEEEEEEGGGTE-EEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE------------
T ss_pred EecCCCcEEEEEEeCCCCE-EEEEe--CCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEE------------
Confidence 4689999999999999997 88887 79999999999999999988 88899999999988754432
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
..+..+..|.+... . .. ...+.
T Consensus 116 -~~dg~i~vw~~~~~-------------~--------------~~----------------------------~~~~~-- 137 (814)
T 3mkq_A 116 -SDDLTVKLWNWENN-------------W--------------AL----------------------------EQTFE-- 137 (814)
T ss_dssp -ETTSEEEEEEGGGT-------------S--------------EE----------------------------EEEEE--
T ss_pred -cCCCEEEEEECCCC-------------c--------------eE----------------------------EEEEc--
Confidence 11222333332211 0 00 00000
Q ss_pred CcccccceeeeeeCC-CC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc--CCCeEEEEeCCCCcEEE
Q psy8285 161 SIINDFYTSGLDWGY-HD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP--RTTDLAVTNTCTEYIDL 235 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~-~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~dg~i~i 235 (507)
.....+.+++|+| ++ +++++.|+.|++||+.+++........ +...+.+++|+| ++++++++ +.||.|++
T Consensus 138 --~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~~ 212 (814)
T 3mkq_A 138 --GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITA-SDDLTIKI 212 (814)
T ss_dssp --CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC--CTTCCCEEEECCSTTCCEEEEE-CTTSEEEE
T ss_pred --CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC--CCCCEEEEEEEECCCCCEEEEE-eCCCEEEE
Confidence 1123477899999 55 667789999999999887765554432 558899999999 89999999 99999999
Q ss_pred EeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC--EEEEEe
Q psy8285 236 WHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR--YLASGS 311 (507)
Q Consensus 236 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~ 311 (507)
||+.+++.+..+..|...|.+++| ++.+|++++.||.|++||+.+.+ ....+..+...+.+++|+|+++ +++++.
T Consensus 213 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK-VEKTLNVGLERSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS-EEEEECCSSSSEEEEEECTTCGGGEEEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEeecCCCcEEEEEEccCCCceEEEEEe
Confidence 999999999999999999999999 68899999999999999999876 5667778889999999999987 577777
Q ss_pred CCcEEEEEcCCCCCC----------------------------------------CCeeeecCCCCCeeEEEEccCCCcE
Q psy8285 312 NNTVKIWDFRQLDAK----------------------------------------RPQVNNQCHLSAVKAIAWCPWEPTL 351 (507)
Q Consensus 312 d~~i~i~d~~~~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~ 351 (507)
++.+.+|++...... ........+...+.+++|+|+++ +
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~ 370 (814)
T 3mkq_A 292 DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR-F 370 (814)
T ss_dssp TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS-E
T ss_pred CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCC-E
Confidence 888999987643100 00011233455689999999995 5
Q ss_pred EEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEE
Q psy8285 352 LATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 431 (507)
Q Consensus 352 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~ 431 (507)
+++++ ++.+.+|++....... .+.+.+++|+|+++++++ ++.++.|++|+ .+.+|...+.++.
T Consensus 371 la~~~---~~~~~i~~~~~~~~~~----~~~i~~~~~spdg~~la~--~~~~g~v~l~~--------~~~~~~~~v~~~~ 433 (814)
T 3mkq_A 371 VTVVG---DGEYVIYTALAWRNKA----FGKCQDFVWGPDSNSYAL--IDETGQIKYYK--------NFKEVTSWSVPMH 433 (814)
T ss_dssp EEEEE---TTEEEEEETTTTEEEE----EEECSEEEECTTSSCEEE--ECTTCCEEEEE--------TTEECTTCCCCCS
T ss_pred EEEec---CCEEEEEECccccccC----CCceEEEEEeCCCCeEEE--EeCCCcEEEEE--------CCCCccceEEcCC
Confidence 55565 8999999986543322 246789999999999999 78899999996 3456888899999
Q ss_pred ECCCC---CEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEeeccCcc
Q psy8285 432 LSPDQ---TCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQPV 480 (507)
Q Consensus 432 ~s~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (507)
|+|++ .+|++++.|+.|++||+.+++.......... .+.|+++...+
T Consensus 434 ~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~--~v~~s~dg~~l 483 (814)
T 3mkq_A 434 SAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK--DVIWSDNGELV 483 (814)
T ss_dssp SCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE--EEEECTTSSEE
T ss_pred cCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC--EEEEcCCCCEE
Confidence 99998 6889999999999999998887766543332 66777665443
No 57
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.2e-38 Score=303.46 Aligned_cols=287 Identities=16% Similarity=0.215 Sum_probs=224.9
Q ss_pred ccceeeeeeCCCC---EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc-CCCeEEEEeCCCCcEEEEeCCC
Q psy8285 165 DFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP-RTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 165 ~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
+..|++|+|+|.+ +++++.||.|+|||+.+++......+.+ |.+.|++++|+| ++.+|+++ +.||+|++||+++
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~g-H~~~V~~l~f~p~~~~~l~s~-s~D~~v~iwd~~~ 196 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIG-AGGSITGLKFNPLNTNQFYAS-SMEGTTRLQDFKG 196 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCS-SSCCCCEEEECSSCTTEEEEE-CSSSCEEEEETTS
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccC-CCCCEEEEEEeCCCCCEEEEE-eCCCEEEEeeccC
Confidence 3459999999843 5566799999999999888777777777 999999999998 57888888 9999999999987
Q ss_pred ceeEEEEee--cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC-EEEEEe-CCc
Q psy8285 241 ERLIQKLRT--HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR-YLASGS-NNT 314 (507)
Q Consensus 241 ~~~~~~~~~--~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~ 314 (507)
+........ +...+.+++| ++.+|++|+.||.|++||++.. ....+..|...|.+++|+|+++ ++++++ |+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~ 274 (435)
T 4e54_B 197 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQT 274 (435)
T ss_dssp CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB
T ss_pred CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcce
Confidence 654443333 3345677888 7899999999999999999764 3566788999999999999886 677887 699
Q ss_pred EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC-------CeEEEE
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS-------QVTSIL 387 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~i~~~~ 387 (507)
|++||++.......+....+|...|++++|+|++..+++.+ . |+.|++||+.+++....+..+. .+..+.
T Consensus 275 v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~--D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-Q--KSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-S--SSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred eeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-C--CCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 99999998754455555567999999999999996555544 3 9999999999988766554321 234456
Q ss_pred ECCCCCeEEEEe----------ccCCCeEEEEeCCCccEEEEee-ccccceeEE-EECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 388 WSEQYRELVTSH----------GKQDCSLKMWEYPRLHLIEELK-IHQERILSA-VLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 388 ~s~~~~~l~~~~----------g~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~-~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
|+|++..++++. +..++.|++||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+||++++
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 666666666531 2345689999999999988864 678888887 6999999999876 78999999998
Q ss_pred CCcc
Q psy8285 456 RDKK 459 (507)
Q Consensus 456 ~~~~ 459 (507)
++..
T Consensus 431 gk~r 434 (435)
T 4e54_B 431 ARTR 434 (435)
T ss_dssp ----
T ss_pred Ceee
Confidence 7653
No 58
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=280.35 Aligned_cols=278 Identities=14% Similarity=0.149 Sum_probs=238.2
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE- 241 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~- 241 (507)
...|.+++| +++ +++++.|+.|++||+.+++....... |...|.+++|+|++++|+++ +.||.|++|++...
T Consensus 18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~~~~~~~ 92 (313)
T 3odt_A 18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT---GQGFLNSVCYDSEKELLLFG-GKDTMINGVPLFATS 92 (313)
T ss_dssp SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE---CSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTCCT
T ss_pred CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec---CCccEEEEEECCCCCEEEEe-cCCCeEEEEEeeecC
Confidence 345888999 654 77778999999999988876665554 88999999999999999999 99999999998754
Q ss_pred --eeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CCCEEEEEe-CCcEEE
Q psy8285 242 --RLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NGRYLASGS-NNTVKI 317 (507)
Q Consensus 242 --~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i 317 (507)
+.+..+..|...|.+++|+++.+++++.|+.|++|| .. .....+..|...+.+++|+| +++++++++ |+.|++
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 93 GEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG-SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp TSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT-EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC-cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 567778889999999999999999999999999999 22 35667788999999999998 899999999 699999
Q ss_pred EEcCCCCCCCCeeeecC-CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeE
Q psy8285 318 WDFRQLDAKRPQVNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYREL 395 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l 395 (507)
||.. .....+.. |...+.+++|+|++. +++ ++. |+.|++||+++++++..+..+ ..+.+++|+|++ .+
T Consensus 170 ~d~~-----~~~~~~~~~~~~~i~~~~~~~~~~-~~~-~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 239 (313)
T 3odt_A 170 WQND-----KVIKTFSGIHNDVVRHLAVVDDGH-FIS-CSN--DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DI 239 (313)
T ss_dssp EETT-----EEEEEECSSCSSCEEEEEEEETTE-EEE-EET--TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CE
T ss_pred EecC-----ceEEEEeccCcccEEEEEEcCCCe-EEE-ccC--CCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CE
Confidence 9943 45556665 889999999999985 544 443 999999999999999988866 789999999999 57
Q ss_pred EEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
++ ++.||.|++||+.+++++..+..|...|.+++|+|+++ +++++.||.|++|++.+++......
T Consensus 240 ~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 240 VS--CGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EE--EETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred EE--EecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 77 77899999999999999999999999999999999998 6679999999999999877665543
No 59
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-37 Score=291.53 Aligned_cols=287 Identities=15% Similarity=0.274 Sum_probs=242.1
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|.+|++.|++|+|+|+|++ |++|+ .|+.|+|||+.+++++..+. |...|
T Consensus 28 l~~h~~~v~~~~~s~~~~~-l~~~~--~dg~i~vwd~~~~~~~~~~~~h~~~v--------------------------- 77 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDL-LFSCS--KDSSASVWYSLNGERLGTLDGHTGTI--------------------------- 77 (369)
T ss_dssp EECCSSCEEEEEECTTSCE-EEEEE--SSSCEEEEETTTCCEEEEECCCSSCE---------------------------
T ss_pred EEEeeceEEEEEEcCCCCE-EEEEe--CCCEEEEEeCCCchhhhhhhhcCCcE---------------------------
Confidence 6899999999999999997 78887 79999999999998776654 33333
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 78 -------------------------------------------------------------------------------- 77 (369)
T 3zwl_B 78 -------------------------------------------------------------------------------- 77 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC-----CcE
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT-----EYI 233 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i 233 (507)
.+++|+|++ +++++.|+.|++||+.+++...... +...+.+++|+|++++++++ +.+ |.|
T Consensus 78 --------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~-~~~~~~~~g~i 144 (369)
T 3zwl_B 78 --------WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK----SPVPVKRVEFSPCGNYFLAI-LDNVMKNPGSI 144 (369)
T ss_dssp --------EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSSEEEEE-ECCBTTBCCEE
T ss_pred --------EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee----cCCCeEEEEEccCCCEEEEe-cCCccCCCCEE
Confidence 345566654 6677899999999999998877766 67789999999999999998 777 999
Q ss_pred EEEeCCCce-----------eEEEEeecCc--cEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEE
Q psy8285 234 DLWHEQEER-----------LIQKLRTHMH--QVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGL 298 (507)
Q Consensus 234 ~iwd~~~~~-----------~~~~~~~~~~--~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 298 (507)
++||+.... ....+..|.. .+.+++| ++++|++++.||.|++||+++.......+..|...|.++
T Consensus 145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 224 (369)
T 3zwl_B 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224 (369)
T ss_dssp EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence 999987653 3344555666 8999999 688999999999999999998555677788899999999
Q ss_pred EEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC--------------eE
Q psy8285 299 KWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ--------------TV 363 (507)
Q Consensus 299 ~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~--------------~i 363 (507)
+|+|++++|++++ |+.|++||++++ +.+..+. +...+..++|+|++..+++.+. ++ .+
T Consensus 225 ~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~i 297 (369)
T 3zwl_B 225 QFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKYE-TDCPLNTAVITPLKEFIILGGG---QEAKDVTTTSANEGKFEA 297 (369)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSSSEEEEEEC---CC-------------CEE
T ss_pred EECCCCCEEEEecCCceEEEEECCCC---ceeeeec-CCCCceeEEecCCCceEEEeec---CCCceEEEEecCCCccee
Confidence 9999999999998 699999999987 6666666 7889999999999976666554 55 89
Q ss_pred EEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 364 RLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 364 ~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
++||..+++.+..+..+ ..|.+++|+|++++|++ ++.||.|++|++..+.....+
T Consensus 298 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 298 RFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYAS--GGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE--EETTSEEEEEEECHHHHTCCC
T ss_pred EEEecCCCcchhheecccCcEEEEEECCCCCEEEE--EcCCCeEEEEECccccchhHH
Confidence 99999999999988876 78999999999999999 789999999999876544333
No 60
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=291.49 Aligned_cols=282 Identities=16% Similarity=0.235 Sum_probs=233.9
Q ss_pred ccceeeeeeCCCC--EEEEE-c---CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC---CCeEEEEeCCCCcEEE
Q psy8285 165 DFYTSGLDWGYHD--TLAVA-L---DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR---TTDLAVTNTCTEYIDL 235 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~-~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~dg~i~i 235 (507)
...|.+++|+|++ +++++ . |+.|++|++.+++........ |...|.+++|+|+ +.+|+++ +.||.|++
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~i 94 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE--KAKPIKCGTFGATSLQQRYLATG-DFGGNLHI 94 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEE--ESSCEEEEECTTCCTTTCCEEEE-ETTSCEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeec--ccCcEEEEEEcCCCCCCceEEEe-cCCCeEEE
Confidence 4468899999987 55555 3 899999999998876555443 8899999999999 6899998 99999999
Q ss_pred EeCCCce-eEEEEeecCccEEEEEe--------eCCEEEEEecCCeEEEEECCCCCcCceeeecCCC----ceEEEE---
Q psy8285 236 WHEQEER-LIQKLRTHMHQVIAMCW--------NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD----VVCGLK--- 299 (507)
Q Consensus 236 wd~~~~~-~~~~~~~~~~~v~~~~~--------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~v~~~~--- 299 (507)
||+.+++ .+..+.+|...|.++.| ++++|++++.||.|++||+++.......+..+.. .+.+++
T Consensus 95 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN 174 (357)
T ss_dssp ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC
T ss_pred EeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEe
Confidence 9999988 88899999999999965 5789999999999999999987655666655544 788888
Q ss_pred -EcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEcc---CCCcEEEEEccCCCCeEEEEeCCCCCee
Q psy8285 300 -WSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP---WEPTLLATGGGICDQTVRLWNSMNGKEK 374 (507)
Q Consensus 300 -~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 374 (507)
|+|+++++++++ |+.|++||++++ +. .....|...|.+++|+| ++..+++.+. |+.|++||+++++..
T Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~---~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 175 AYNQEERVVCAGYDNGDIKLFDLRNM---AL-RWETNIKNGVCSLEFDRKDISMNKLVATSL---EGKFHVFDMRTQHPT 247 (357)
T ss_dssp CCC-CCCEEEEEETTSEEEEEETTTT---EE-EEEEECSSCEEEEEESCSSSSCCEEEEEES---TTEEEEEEEEEEETT
T ss_pred ccCCCCCEEEEEccCCeEEEEECccC---ce-eeecCCCCceEEEEcCCCCCCCCEEEEECC---CCeEEEEeCcCCCcc
Confidence 788999999999 599999999986 33 44456889999999999 7765555443 999999999887766
Q ss_pred eeee-----cC-CCeEEEEECCCCC-eEEEEeccCCCeEEEEeCCCc-------------------cEEEEeecccccee
Q psy8285 375 CHVK-----TD-SQVTSILWSEQYR-ELVTSHGKQDCSLKMWEYPRL-------------------HLIEELKIHQERIL 428 (507)
Q Consensus 375 ~~~~-----~~-~~i~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~~-------------------~~~~~~~~~~~~i~ 428 (507)
..+. .+ ..+.+++|+|+++ ++++ ++.||.|++||++++ +.+..+.+|...|+
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLT--AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEE--EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEE--EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence 5553 44 7899999999999 6777 789999999998753 46777889999999
Q ss_pred EEEECCCCCEEE-EEeCCCcEEEEecCCCCc
Q psy8285 429 SAVLSPDQTCVA-AASADETISIWNCFPRDK 458 (507)
Q Consensus 429 ~~~~s~~~~~l~-s~~~dg~i~iw~~~~~~~ 458 (507)
+++|+|++++|+ +++.||.|++|++.+.+.
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 999999999998 899999999999987653
No 61
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2e-37 Score=292.90 Aligned_cols=286 Identities=15% Similarity=0.210 Sum_probs=236.8
Q ss_pred cceeeeeeCCCC-EE-EEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 166 FYTSGLDWGYHD-TL-AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~-~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
..|.+++|+|++ ++ +++.++.|++|++.+++......+.+ |...|.+++|+|++++|+++ +.||.|++||+.+++.
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTC-GTDRNAYVWTLKGRTW 86 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEE-ETTSCEEEEEEETTEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEE-cCCCeEEEEECCCCee
Confidence 357899999998 44 45589999999999887444555555 99999999999999999999 8999999999988875
Q ss_pred EEEE--eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc---CceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 244 IQKL--RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD---YPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 244 ~~~~--~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
...+ ..|...|.+++| ++++|++++.|+.|++||++.... .......|...|.+++|+|++++|++++ |+.|
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 166 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 166 (372)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCE
Confidence 5544 568999999999 688999999999999999987652 2233356889999999999999999999 6999
Q ss_pred EEEEcCCC---------------CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 316 KIWDFRQL---------------DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 316 ~i~d~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
++||++.. ...+.+..+..|...|.+++|+|++..+++.+ . |+.|++||+++++++..+..+
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~--d~~i~i~d~~~~~~~~~~~~~ 243 (372)
T 1k8k_C 167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-H--DSTVCLADADKKMAVATLASE 243 (372)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-T--TTEEEEEEGGGTTEEEEEECS
T ss_pred EEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe-C--CCEEEEEECCCCceeEEEccC
Confidence 99996521 01266777778999999999999986555544 3 999999999999999988877
Q ss_pred -CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC--cc--------------------------------EE------EE
Q psy8285 381 -SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR--LH--------------------------------LI------EE 419 (507)
Q Consensus 381 -~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~--~~--------------------------------~~------~~ 419 (507)
..+.+++|+|+++++++ | .|+.|++|++.+ ++ .. ..
T Consensus 244 ~~~v~~~~~~~~~~~l~~--~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (372)
T 1k8k_C 244 TLPLLAVTFITESSLVAA--G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG 320 (372)
T ss_dssp SCCEEEEEEEETTEEEEE--E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred CCCeEEEEEecCCCEEEE--E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccc
Confidence 58999999999998887 6 799999999987 32 10 23
Q ss_pred e-eccccceeEEEEC-CCC---CEEEEEeCCCcEEEEecCCCCcc
Q psy8285 420 L-KIHQERILSAVLS-PDQ---TCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 420 ~-~~~~~~i~~~~~s-~~~---~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
+ .+|...|++++|. ++| .+|++++.||.|++|++.+.+..
T Consensus 321 ~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 321 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred ccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 3 4899999999976 566 99999999999999999876544
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.2e-37 Score=314.24 Aligned_cols=230 Identities=16% Similarity=0.275 Sum_probs=192.8
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
|.+++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++++|+++ +.|++|++||........
T Consensus 433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~--~-h~~~v~~~~~s~~~~~l~s~-s~D~~i~iwd~~~~~~~~ 508 (694)
T 3dm0_A 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV--G-HTKDVLSVAFSLDNRQIVSA-SRDRTIKLWNTLGECKYT 508 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--C-CSSCEEEEEECTTSSCEEEE-ETTSCEEEECTTSCEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe--C-CCCCEEEEEEeCCCCEEEEE-eCCCEEEEEECCCCccee
Confidence 5678888877 6677899999999999887665544 4 99999999999999999999 999999999987654433
Q ss_pred EE---eecCccEEEEEee--C--CEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEE
Q psy8285 246 KL---RTHMHQVIAMCWN--G--NLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKI 317 (507)
Q Consensus 246 ~~---~~~~~~v~~~~~~--~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i 317 (507)
.. .+|...|.+++|+ + ..|++++.|+.|++||+++.+ ....+.+|...|++++|+|++++|++++ |+.|++
T Consensus 509 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~i 587 (694)
T 3dm0_A 509 ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLL 587 (694)
T ss_dssp ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEE
T ss_pred eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 32 3588899999993 2 589999999999999999875 5667889999999999999999999999 699999
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-----------------
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----------------- 380 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----------------- 380 (507)
||++++ +.+..+. +...+.+++|+|++ .+++++. ++.|++||+++++.+..+..+
T Consensus 588 wd~~~~---~~~~~~~-~~~~v~~~~~sp~~-~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (694)
T 3dm0_A 588 WDLAEG---KKLYSLE-ANSVIHALCFSPNR-YWLCAAT---EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK 659 (694)
T ss_dssp EETTTT---EEEECCB-CSSCEEEEEECSSS-SEEEEEE---TTEEEEEETTTTEEEEEECCCCC---------------
T ss_pred EECCCC---ceEEEec-CCCcEEEEEEcCCC-cEEEEEc---CCCEEEEECCCCCChhhhccccccccccccccccccCC
Confidence 999987 5666655 45689999999987 5666665 788999999999877765422
Q ss_pred ---CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 381 ---SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 381 ---~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
..+++++|+|+|++|++ |+.||.|++|++.
T Consensus 660 ~~~~~~~~l~~spdg~~l~s--gs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 660 RKVIYCTSLNWSADGSTLFS--GYTDGVIRVWGIG 692 (694)
T ss_dssp -CCCCEEEEEECTTSSEEEE--EETTSEEEEEEC-
T ss_pred ceeEEeeeEEEcCCCCEEEE--EcCCCeEEEEecc
Confidence 13688999999999999 8899999999985
No 63
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=291.31 Aligned_cols=286 Identities=15% Similarity=0.274 Sum_probs=228.4
Q ss_pred CcccccceeeeeeccCcceeeecccccc---ccceeeecccCCcceeee--ecCcccceeeccccccccccCCccCCcee
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGKEKCHV--KTDSQVTSILWSEQYRESSRSKMVNTDRY 76 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~---d~~i~iWd~~~g~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~~~~ 76 (507)
+++|.+.|++++|+|++++++++|+ . |+.|+|||+.+++..... .+...|.+
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s--~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~--------------------- 70 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGN--FARGTGVIQLYEIQHGDLKLLREIEKAKPIKC--------------------- 70 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC----CCCEEEEEEEECSSSEEEEEEEEESSCEEE---------------------
T ss_pred ccCCCCceEEEEEcCCCceEEEecC--ccCCCcEEEEEeCCCCcccceeeecccCcEEE---------------------
Confidence 3689999999999999988888887 6 999999999988764432 23334444
Q ss_pred EeecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhh
Q psy8285 77 VVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERI 156 (507)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
T Consensus 71 -------------------------------------------------------------------------------- 70 (357)
T 3i2n_A 71 -------------------------------------------------------------------------------- 70 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCcccccceeeeeeCCC----C-EEEEEcCCeEEEEECCCCc-eeEEEecCCCCCCceEEEEE------ccCCCeEE
Q psy8285 157 LEAPSIINDFYTSGLDWGYH----D-TLAVALDTSVYTWNTKTNK-TQLLVEYPTYDNAYISCVAW------KPRTTDLA 224 (507)
Q Consensus 157 ~~~~~~~~~~~i~~~~~s~~----~-~~~~~~~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~------~~~~~~l~ 224 (507)
++|+|+ . +++++.|+.|++||+.+++ .... +.+ |...|.++.| +|++++|+
T Consensus 71 --------------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 71 --------------GTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS--VKG-HKEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp --------------EECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE--ECC-CSSCEEEEEEESGGGCC-CCCEEE
T ss_pred --------------EEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE--EEe-cccceEEEeeccccccCCCccEEE
Confidence 445444 2 6777899999999999877 4433 344 8999999955 68899999
Q ss_pred EEeCCCCcEEEEeCCCce-eEEEEeecCc----cEEEEE----e--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCC
Q psy8285 225 VTNTCTEYIDLWHEQEER-LIQKLRTHMH----QVIAMC----W--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD 293 (507)
Q Consensus 225 ~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~~----~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 293 (507)
++ +.||.|++||+.+++ .+..+..|.. .+.++. | ++++|++++.||.|++||+++.+ ......|..
T Consensus 134 ~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~ 210 (357)
T 3i2n_A 134 TG-SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA--LRWETNIKN 210 (357)
T ss_dssp EE-ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE--EEEEEECSS
T ss_pred EE-eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc--eeeecCCCC
Confidence 99 999999999999887 6777766554 788988 3 78999999999999999999876 345567889
Q ss_pred ceEEEEEcC---CCCEEEEEe-CCcEEEEEcCCCCCCCCeeee-----cCCCCCeeEEEEccCCCcEEEEEccCCCCeEE
Q psy8285 294 VVCGLKWSP---NGRYLASGS-NNTVKIWDFRQLDAKRPQVNN-----QCHLSAVKAIAWCPWEPTLLATGGGICDQTVR 364 (507)
Q Consensus 294 ~v~~~~~~~---~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~ 364 (507)
.|.+++|+| +++++++++ |+.|++||++.+ +....+ ..|...|++++|+|++..++++++. |+.|+
T Consensus 211 ~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~ 285 (357)
T 3i2n_A 211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ---HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG--AGGLH 285 (357)
T ss_dssp CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE---ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET--TSEEE
T ss_pred ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC---CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC--CCcEE
Confidence 999999999 999999999 699999999886 333333 3899999999999999757777765 99999
Q ss_pred EEeCCCCC-------------------eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 365 LWNSMNGK-------------------EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 365 i~d~~~~~-------------------~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
+||++.+. .+..+..+ ..|.+++|+|++++|+++ ++.|+.|++||+.+.+.
T Consensus 286 iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s-~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 286 LWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVC-SSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEE-EETTSEEEEEEECC---
T ss_pred EeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEE-ecCCCcEEEEECCCccc
Confidence 99997653 34455555 689999999999999833 78899999999987654
No 64
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.5e-37 Score=289.74 Aligned_cols=281 Identities=14% Similarity=0.205 Sum_probs=222.4
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee---cCcccceeeccccccccccCCccCCceeEe
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK---TDSQVTSILWSEQYRESSRSKMVNTDRYVV 78 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~---~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 78 (507)
|.+|.+.|++++|+|+++.+|++|+ .|+.|+|||+.+++....+. +..
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~h~~--------------------------- 119 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGS--KGGDIILWDYDVQNKTSFIQGMGPGD--------------------------- 119 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEE--BTSCEEEEETTSTTCEEEECCCSTTC---------------------------
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEc--CCCeEEEEeCCCcccceeeecCCcCC---------------------------
Confidence 5689999999999999944599998 89999999999887655432 222
Q ss_pred ecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhc
Q psy8285 79 DRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILE 158 (507)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (507)
T Consensus 120 -------------------------------------------------------------------------------- 119 (383)
T 3ei3_B 120 -------------------------------------------------------------------------------- 119 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccceeeeeeCC-CC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEE
Q psy8285 159 APSIINDFYTSGLDWGY-HD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDL 235 (507)
Q Consensus 159 ~~~~~~~~~i~~~~~s~-~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~i 235 (507)
.|.+++|+| ++ +++++.|+.|++||+.+..........+ +...|.+++|+|++++|+++ +.|+.|++
T Consensus 120 --------~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~i 189 (383)
T 3ei3_B 120 --------AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS-WDYWYCCVDVSVSRQMLATG-DSTGRLLL 189 (383)
T ss_dssp --------BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCC-SSCCEEEEEEETTTTEEEEE-ETTSEEEE
T ss_pred --------ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCC-CCCCeEEEEECCCCCEEEEE-CCCCCEEE
Confidence 244566777 33 6677899999999998755444444333 56889999999999999999 99999999
Q ss_pred EeCCCceeEEEEeecCccEEEEEe--eCC-EEEEEecCCeEEEEECCCCCc--CceeeecCCCceEEEEEcC-CCCEEEE
Q psy8285 236 WHEQEERLIQKLRTHMHQVIAMCW--NGN-LLSCGTIGGNILHYDVRTHSD--YPTAITREGDVVCGLKWSP-NGRYLAS 309 (507)
Q Consensus 236 wd~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~ 309 (507)
||+ +++.+..+..|...|.+++| +++ +|++++.|+.|++||+++.+. .......|...|.+++|+| ++++|++
T Consensus 190 ~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~ 268 (383)
T 3ei3_B 190 LGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLT 268 (383)
T ss_dssp EET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEE
T ss_pred EEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEE
Confidence 999 57888899999999999999 466 999999999999999997431 1223337899999999999 9999999
Q ss_pred Ee-CCcEEEEEcCCCCCCCCeeeecCC-------C----------CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC
Q psy8285 310 GS-NNTVKIWDFRQLDAKRPQVNNQCH-------L----------SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG 371 (507)
Q Consensus 310 ~~-d~~i~i~d~~~~~~~~~~~~~~~~-------~----------~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 371 (507)
++ |+.|++||++++ .....+..| . ..+..++|+|++.. +++ .|+.|++||+.++
T Consensus 269 ~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s--~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 269 TDQRNEIRVYSSYDW---SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLN--DKRTIDIYDANSG 340 (383)
T ss_dssp EESSSEEEEEETTBT---TSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTT--CCCCEEEEETTTC
T ss_pred EcCCCcEEEEECCCC---ccccccccccccccccccceEEeccCCCCceEEEecCCccc---ccC--CCCeEEEEecCCC
Confidence 99 699999999987 343333322 2 23444666666644 333 4999999999999
Q ss_pred CeeeeeecC---CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 372 KEKCHVKTD---SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 372 ~~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
+++..+..+ ..+..++|+|++++|++ ++ |+.|++||+++
T Consensus 341 ~~~~~l~~~~~~~~~~~~~~s~~g~~l~s--~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 341 GLVHQLRDPNAAGIISLNKFSPTGDVLAS--GM-GFNILIWNRED 382 (383)
T ss_dssp CEEEEECBTTBCSCCCEEEECTTSSEEEE--EE-TTEEEEEECC-
T ss_pred ceeeeecCCCCCceEEEEEEecCccEEEE--ec-CCcEEEEecCC
Confidence 999988753 45777799999999998 65 89999999864
No 65
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5e-37 Score=285.96 Aligned_cols=297 Identities=13% Similarity=0.168 Sum_probs=245.4
Q ss_pred ceeeeeeCCCC-EEEE-EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee-
Q psy8285 167 YTSGLDWGYHD-TLAV-ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL- 243 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~- 243 (507)
.+.+++|+|++ +++. ..++.+..|...... ......+ |...|.+++|+|++++++++ + ||.|++||+.+++.
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-h~~~v~~~~~~~~~~~l~~~-~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHA--RQINTLN-HGEVVCAVTISNPTRHVYTG-G-KGCVKVWDISHPGNK 85 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEE--EEEEEEC-CSSCCCEEEECSSSSEEEEE-C-BSEEEEEETTSTTCC
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCcc--ccceecc-CCCceEEEEEecCCcEEEEc-C-CCeEEEEECCCCCce
Confidence 36789999998 5544 345556555443322 2222224 89999999999999999998 6 99999999987653
Q ss_pred --EEEEe--ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc-CceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 244 --IQKLR--THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD-YPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 244 --~~~~~--~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
+..+. .|...+.+++| ++++|++++.|+.|++||+++.+. ....+..|...+.+++|+|+++++++++ |+.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 33333 68999999999 688999999999999999988652 3445677889999999999999999998 6999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeE
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYREL 395 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (507)
++||++++ +.+..+..|...+.+++|+|++..+++.+. |+.|++||+++++.+..+.....+.+++|+|+++++
T Consensus 166 ~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l 239 (337)
T 1gxr_A 166 AVWDLHNQ---TLVRQFQGHTDGASCIDISNDGTKLWTGGL---DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL 239 (337)
T ss_dssp EEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEE
T ss_pred EEEeCCCC---ceeeeeecccCceEEEEECCCCCEEEEEec---CCcEEEEECCCCceEeeecCCCceEEEEECCCCCEE
Confidence 99999987 778888889999999999999865555443 999999999999999888888899999999999999
Q ss_pred EEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEee
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAI 475 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 475 (507)
++ ++.++.|++||+.+++.. .+..|...|.+++|+|++++|++++.||.|++|++.+++..........+..+.|.+
T Consensus 240 ~~--~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~ 316 (337)
T 1gxr_A 240 AV--GMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316 (337)
T ss_dssp EE--EETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECT
T ss_pred EE--EcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECC
Confidence 99 788999999999987754 567899999999999999999999999999999999988876655555666666665
Q ss_pred cc
Q psy8285 476 LK 477 (507)
Q Consensus 476 ~~ 477 (507)
+.
T Consensus 317 ~~ 318 (337)
T 1gxr_A 317 DD 318 (337)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 66
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=292.30 Aligned_cols=279 Identities=14% Similarity=0.282 Sum_probs=232.8
Q ss_pred ceeeeeeCCCC---EEEEEcCCeEEEEEC----CCCc------eeEEEec--CCC-----CCCceEEEEEccCCCeEEEE
Q psy8285 167 YTSGLDWGYHD---TLAVALDTSVYTWNT----KTNK------TQLLVEY--PTY-----DNAYISCVAWKPRTTDLAVT 226 (507)
Q Consensus 167 ~i~~~~~s~~~---~~~~~~~~~i~iw~~----~~~~------~~~~~~~--~~~-----~~~~v~~~~~~~~~~~l~~~ 226 (507)
.|.+++|+|++ +++++.|+.|++|++ .+++ ....... .+. |...|++++|+|++++|+++
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 57899999985 455678999999999 8877 2333221 110 46699999999999999999
Q ss_pred eCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCc----------
Q psy8285 227 NTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDV---------- 294 (507)
Q Consensus 227 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------- 294 (507)
+.||.|++|| .+++.+..+..|...|.+++| ++++|++++.|+.|++||+.+++ ....+..+...
T Consensus 127 -~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 127 -VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-VMQHFELKETGGSSINAENHS 203 (425)
T ss_dssp -ETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-EEEEECCC-------------
T ss_pred -eCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-EEEEeeccccCccceeecccc
Confidence 8999999999 677888899999999999999 68899999999999999998875 44555555555
Q ss_pred -----eEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC
Q psy8285 295 -----VCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM 369 (507)
Q Consensus 295 -----v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 369 (507)
+.+++|+|++.+++.+.++.|++||++.+ +.+..+..|...|.+++|+|++..+++.+ . |+.|++||++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~--d~~i~i~d~~ 277 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK---TPTGKLIGHHGPISVLEFNDTNKLLLSAS-D--DGTLRIWHGG 277 (425)
T ss_dssp --CCCBSCCEEEETTEEEEECGGGCEEEEETTCS---SCSEEECCCSSCEEEEEEETTTTEEEEEE-T--TSCEEEECSS
T ss_pred CCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC---ceeeeeccCCCceEEEEECCCCCEEEEEc-C--CCEEEEEECC
Confidence 88999999876444444799999999987 77778888999999999999986555544 3 9999999999
Q ss_pred CCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcE
Q psy8285 370 NGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETI 448 (507)
Q Consensus 370 ~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i 448 (507)
+++.+..+..+ ..+.+++|+|++ ++++ ++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|
T Consensus 278 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 278 NGNSQNCFYGHSQSIVSASWVGDD-KVIS--CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQV 354 (425)
T ss_dssp SBSCSEEECCCSSCEEEEEEETTT-EEEE--EETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCccceEecCCCccEEEEEECCCC-EEEE--EeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeE
Confidence 99988888755 789999999999 7777 7889999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC
Q psy8285 449 SIWNCFPRD 457 (507)
Q Consensus 449 ~iw~~~~~~ 457 (507)
++|++.+.+
T Consensus 355 ~i~~~~~~~ 363 (425)
T 1r5m_A 355 NVYDLKKLN 363 (425)
T ss_dssp EEEECHHHH
T ss_pred EEEECCCCc
Confidence 999998766
No 67
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=288.58 Aligned_cols=273 Identities=16% Similarity=0.299 Sum_probs=190.4
Q ss_pred ceeeeeeCC-CC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCC---CeEEEEeCCCCcEEEEeCCC
Q psy8285 167 YTSGLDWGY-HD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRT---TDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 167 ~i~~~~~s~-~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~dg~i~iwd~~~ 240 (507)
.|.+++|+| ++ +++++.|+.|++||+.+++...... +...+.++.|+|.+ .+++++ +.+|.|++||+.+
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~d~~~ 175 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVG-TRGPKVQLCDLKS 175 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEE-ESSSSEEEEESSS
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEE-cCCCeEEEEeCCC
Confidence 477899998 44 7777889999999999998877776 56789999999855 478888 9999999999999
Q ss_pred ceeEEEEeecCccEEEEEe--eCC-EEEEEecCCeEEEEECCCCCcCceee---------------ecCCCceEEEEEcC
Q psy8285 241 ERLIQKLRTHMHQVIAMCW--NGN-LLSCGTIGGNILHYDVRTHSDYPTAI---------------TREGDVVCGLKWSP 302 (507)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~~v~~~~~~~ 302 (507)
++.+..+..|...|.+++| +++ +|++++.||.|++||++........+ ..|...|.+++|+|
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 9999999999999999999 455 69999999999999998765333333 57888999999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCC-----CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCH-----LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 376 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 376 (507)
++++|++++ |+.|++||++++. .......+ ...+........+..+++++. ++.|++||+.+++++..
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~~ 329 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGE---NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY---GSTIAVYTVYSGEQITM 329 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCC---BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE---TTEEEEEETTTCCEEEE
T ss_pred CCCEEEEecCCCeEEEEECCCCc---cceeccccccccccccceeEEecCCCceEEEEec---CCEEEEEECcCCcceee
Confidence 999999999 6999999999873 22222111 112222222233445666655 99999999999999999
Q ss_pred eecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECC-CCCEEEEEeCCCcEEEEecC
Q psy8285 377 VKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP-DQTCVAAASADETISIWNCF 454 (507)
Q Consensus 377 ~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~dg~i~iw~~~ 454 (507)
+..+ ..|.+++|+|++++|++ ++.||.|++||+.+++++.....+... ..+.+ ....+.+.+.++.+++|+..
T Consensus 330 ~~~~~~~v~~~~~s~~~~~l~s--~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 330 LKGHYKTVDCCVFQSNFQELYS--GSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ECCCSSCEEEEEEETTTTEEEE--EETTSCEEEEEECC------------------------------------------
T ss_pred eccCCCeEEEEEEcCCCCEEEE--ECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCc
Confidence 9876 78999999999999999 889999999999998887665543322 23444 33455667788999999865
Q ss_pred C
Q psy8285 455 P 455 (507)
Q Consensus 455 ~ 455 (507)
.
T Consensus 405 ~ 405 (408)
T 4a11_B 405 Q 405 (408)
T ss_dssp -
T ss_pred c
Confidence 3
No 68
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.8e-37 Score=290.23 Aligned_cols=278 Identities=16% Similarity=0.254 Sum_probs=231.0
Q ss_pred ccceeeeeeCCC----C--EEEEEcCCeEEEEECCCCceeEEEe---cCCCCCCceEEEEEccC----CCeEEEEeCCCC
Q psy8285 165 DFYTSGLDWGYH----D--TLAVALDTSVYTWNTKTNKTQLLVE---YPTYDNAYISCVAWKPR----TTDLAVTNTCTE 231 (507)
Q Consensus 165 ~~~i~~~~~s~~----~--~~~~~~~~~i~iw~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~----~~~l~~~~~~dg 231 (507)
...|.+++|+|+ . +++++.++.|++|+..+++...... ... |...|.+++|+|+ +++|+++ +.||
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~-~~dg 95 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDAD-ADENFYTCAWTYDSNTSHPLLAVA-GSRG 95 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSC-TTCCEEEEEEEECTTTCCEEEEEE-ETTC
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccC-CCCcEEEEEeccCCCCCCCEEEEe-cCCC
Confidence 446889999983 2 7777888899999999776544333 222 6688999999999 5688888 9999
Q ss_pred cEEEEeCCCceeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceee---ecCCCceEEEEEcCCCC
Q psy8285 232 YIDLWHEQEERLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAI---TREGDVVCGLKWSPNGR 305 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 305 (507)
.|++||+.+++.+..+.+|...|.+++| ++++|++++.||.|++||+++++ ....+ ..|...|.+++|+|+++
T Consensus 96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (366)
T 3k26_A 96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-LVAIFGGVEGHRDEVLSADYDLLGE 174 (366)
T ss_dssp EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-EEEEECSTTSCSSCEEEEEECTTSS
T ss_pred EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-EEEEecccccccCceeEEEECCCCC
Confidence 9999999999999999999999999999 57899999999999999999875 34444 57999999999999999
Q ss_pred EEEEEe-CCcEEEEEcCCCCCCCCee----------------------------eecCCCCCeeEEEEccCCCcEEEEEc
Q psy8285 306 YLASGS-NNTVKIWDFRQLDAKRPQV----------------------------NNQCHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 306 ~l~~~~-d~~i~i~d~~~~~~~~~~~----------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
+|++++ |+.|++||++++ +... ....|...|.+++|+ + .++++++
T Consensus 175 ~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~ 248 (366)
T 3k26_A 175 KIMSCGMDHSLKLWRINSK---RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKS 248 (366)
T ss_dssp EEEEEETTSCEEEEESCSH---HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEEC
T ss_pred EEEEecCCCCEEEEECCCC---ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEe
Confidence 999999 699999999875 2222 223389999999998 4 3555655
Q ss_pred cCCCCeEEEEeCCCCCe--------------eeeeecC-CCeEEEEECCC--CCeEEEEeccCCCeEEEEeCCCcc----
Q psy8285 357 GICDQTVRLWNSMNGKE--------------KCHVKTD-SQVTSILWSEQ--YRELVTSHGKQDCSLKMWEYPRLH---- 415 (507)
Q Consensus 357 ~~~d~~i~i~d~~~~~~--------------~~~~~~~-~~i~~~~~s~~--~~~l~~~~g~~d~~i~v~d~~~~~---- 415 (507)
. |+.|++||+++++. +..+..+ ..+.+++|+|+ +++|++ ++.||.|++||+.+++
T Consensus 249 ~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~ 324 (366)
T 3k26_A 249 C--ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL--GNQVGKLYVWDLEVEDPHKA 324 (366)
T ss_dssp S--SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE--ECTTSCEEEEECCSSSGGGC
T ss_pred c--CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE--EecCCcEEEEECCCCCCccc
Confidence 4 99999999987754 4555555 67999999999 999999 8899999999999875
Q ss_pred EEEEeecc--ccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 416 LIEELKIH--QERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 416 ~~~~~~~~--~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
....+.+| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 325 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 325 KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 44477777 78999999999999999999999999999853
No 69
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.8e-36 Score=273.05 Aligned_cols=246 Identities=17% Similarity=0.332 Sum_probs=206.8
Q ss_pred cCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC--ceeEEEEeecCccEEEEEee----CCEEEEEecCCeEEEE
Q psy8285 203 YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE--ERLIQKLRTHMHQVIAMCWN----GNLLSCGTIGGNILHY 276 (507)
Q Consensus 203 ~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~ 276 (507)
+.+ |...|.+++|+|++++|+++ +.|++|+|||+.+ .+.+..+.+|..+|.+++|. +++|++++.|++|++|
T Consensus 5 ~~~-h~~~V~~~~~s~~g~~las~-s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 5 ANA-HNEMIHDAVMDYYGKRMATC-SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp CCS-CSSCEEEEEECTTSSEEEEE-ETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred ccC-CcCceEEEEECCCCCEEEEE-eCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 455 99999999999999999999 9999999999974 46788899999999999992 7899999999999999
Q ss_pred ECCCCC-cCceeeecCCCceEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCC----
Q psy8285 277 DVRTHS-DYPTAITREGDVVCGLKWSPN--GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWE---- 348 (507)
Q Consensus 277 d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---- 348 (507)
|++++. .....+..|...|.+++|+|+ +.+|++++ |+.|++||++..... ....+.+|...|.+++|+|++
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-SPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-CCEEEECCSSCEEEEEECCCC----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-eeeeeecccCccceEeecCCccccc
Confidence 998764 244566789999999999997 88999999 699999999875221 235667899999999999973
Q ss_pred --------CcEEEEEccCCCCeEEEEeCCCCC----eeeeeecC-CCeEEEEECCCC---CeEEEEeccCCCeEEEEeCC
Q psy8285 349 --------PTLLATGGGICDQTVRLWNSMNGK----EKCHVKTD-SQVTSILWSEQY---RELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 349 --------~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~-~~i~~~~~s~~~---~~l~~~~g~~d~~i~v~d~~ 412 (507)
..++++++. |++|++||+++++ ....+..| ..|.+++|+|++ ++|++ ++.|+.|++||+.
T Consensus 162 ~~~~~~~~~~~l~sgs~--D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las--~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA--DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS--VSQDRTCIIWTQD 237 (297)
T ss_dssp --------CCEEEEEET--TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEEEEES
T ss_pred ccCCCCCCcceEEEEcC--CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE--EECCCcEEEEEeC
Confidence 246666665 9999999998776 45566666 689999999995 77888 8899999999997
Q ss_pred Ccc---EEEEe--eccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 413 RLH---LIEEL--KIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 413 ~~~---~~~~~--~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
+.. ....+ ..|...|.+++|+|++++|++++.|+.|++|+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 643 22233 46788999999999999999999999999999864
No 70
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.2e-37 Score=295.04 Aligned_cols=276 Identities=13% Similarity=0.182 Sum_probs=227.5
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
++.++|+|++ +++++.|+.|++||..+++...... . + ..+....|+|++++|+++ +.||.|++||+.+++...
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~--~-~-~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK--R-A-DYTAVDTAKLQMRRFILG-TTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC--S-C-CEEEEEEECSSSCEEEEE-ETTSCEEEECTTSCEEEE
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe--c-C-CceEEEEEecCCCEEEEE-ECCCCEEEEeCCCcceee
Confidence 3468899987 7788899999999998766543332 2 3 445556789999999999 999999999999999888
Q ss_pred EEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q psy8285 246 KLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 246 ~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 322 (507)
.+..|...|.+++| ++++|++++.|+.|++||+++++ ....+.+|...|.+++|+|++++|++++ |+.|++||+++
T Consensus 134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 212 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212 (420)
T ss_dssp ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence 88899999999999 68899999999999999999876 5677889999999999999999999999 69999999998
Q ss_pred CCCCCCeeeecC---CCCCeeEE---------------------EEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee
Q psy8285 323 LDAKRPQVNNQC---HLSAVKAI---------------------AWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK 378 (507)
Q Consensus 323 ~~~~~~~~~~~~---~~~~v~~~---------------------~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 378 (507)
+ +.+..+.. +...+.++ +|+|++. ++++++. |+.|++||+++++.+..+.
T Consensus 213 ~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~--dg~i~i~d~~~~~~~~~~~ 286 (420)
T 3vl1_A 213 G---TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHV--SGVITVHNVFSKEQTIQLP 286 (420)
T ss_dssp T---EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEET--TSCEEEEETTTCCEEEEEC
T ss_pred C---ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcC--CCeEEEEECCCCceeEEcc
Confidence 7 55555543 34444444 4567774 4555544 9999999999998877775
Q ss_pred cC--CCeEEEEECCCCC-eEEEEeccCCCeEEEEeCCCccE-EEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 379 TD--SQVTSILWSEQYR-ELVTSHGKQDCSLKMWEYPRLHL-IEELKI-HQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 379 ~~--~~i~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~~~~-~~~~~~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
.. ..+.+++|+|+++ +|++ |+.||.|++||+++++. +..+.. |...|.++.| +++++|++++.|+.|++|++
T Consensus 287 ~~~~~~v~~~~~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 287 SKFTCSCNSLTVDGNNANYIYA--GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp CTTSSCEEEEEECSSCTTEEEE--EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEE
T ss_pred cccCCCceeEEEeCCCCCEEEE--EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEec
Confidence 43 6899999999999 8888 88999999999998754 677776 6677888855 57889999999999999999
Q ss_pred CCCCc
Q psy8285 454 FPRDK 458 (507)
Q Consensus 454 ~~~~~ 458 (507)
...+.
T Consensus 364 ~~~~~ 368 (420)
T 3vl1_A 364 SDPES 368 (420)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 87543
No 71
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.3e-37 Score=291.37 Aligned_cols=224 Identities=13% Similarity=0.183 Sum_probs=187.0
Q ss_pred EEEEEcCCeEEEEECCCCce-----eEEEecCCCC-----CCceEEEEEc----cCCCe-EEEEeCCCCcEEEEeCCC--
Q psy8285 178 TLAVALDTSVYTWNTKTNKT-----QLLVEYPTYD-----NAYISCVAWK----PRTTD-LAVTNTCTEYIDLWHEQE-- 240 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~-----~~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~~dg~i~iwd~~~-- 240 (507)
+++++.|+.|++|++.+++. ..... + | ...|.+++|+ |++++ |+++ +.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLD--L-LDSDMKKHSFWALKWGASNDRLLSHRLVAT-DVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEEC--C-SCTTGGGSCEEEEEEECCC----CEEEEEE-ETTSCEEEEEEESSS
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeec--c-cccccCCCcEEEEEEeeccCCCCceEEEEE-eCCCcEEEEeCCccc
Confidence 56677999999999988774 33333 3 5 5899999999 99999 8888 8999999999998
Q ss_pred ----ceeEE-----EEe-------ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeec---C---CCceE
Q psy8285 241 ----ERLIQ-----KLR-------THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITR---E---GDVVC 296 (507)
Q Consensus 241 ----~~~~~-----~~~-------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~---~~~v~ 296 (507)
++.+. .+. .|...+.+++| ++ .|++++.|+.|++||+++.+ ....+.. | ...|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~h~~~~~~i~ 237 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-PLYNFESQHSMINNSNSIR 237 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-EEEEEECCC---CCCCCEE
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc-eeEEEeccccccccCCccc
Confidence 66655 664 38889999999 57 99999999999999999865 5566777 8 89999
Q ss_pred EEEEcCCCCEEEEEe-C---CcEEEEEcCCCCCCCCeeeecC-------------CCCCeeEEEEccCCCcEEEEEccCC
Q psy8285 297 GLKWSPNGRYLASGS-N---NTVKIWDFRQLDAKRPQVNNQC-------------HLSAVKAIAWCPWEPTLLATGGGIC 359 (507)
Q Consensus 297 ~~~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~~~ 359 (507)
+++|+|++++|++++ | +.|++||++++ +.+..+.. |...|.+++|+|++..+++ ++.
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~-- 311 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS-AGW-- 311 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE-EET--
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEE-EeC--
Confidence 999999999999998 7 89999999987 77888887 9999999999999865555 443
Q ss_pred CCeEEEEeCCCCCeeeeee------c----------------CCCeEEEEECCCC----------CeEEEEeccCCCeEE
Q psy8285 360 DQTVRLWNSMNGKEKCHVK------T----------------DSQVTSILWSEQY----------RELVTSHGKQDCSLK 407 (507)
Q Consensus 360 d~~i~i~d~~~~~~~~~~~------~----------------~~~i~~~~~s~~~----------~~l~~~~g~~d~~i~ 407 (507)
|+.|++||+++++++..+. . ...|.+++|+|++ ++|++ ++.||.|+
T Consensus 312 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s--~~~dg~i~ 389 (397)
T 1sq9_A 312 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC--VCLDRSIR 389 (397)
T ss_dssp TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE--EETTTEEE
T ss_pred CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE--ecCCCcEE
Confidence 9999999999999998887 4 4689999999998 68888 78999999
Q ss_pred EEeCCCcc
Q psy8285 408 MWEYPRLH 415 (507)
Q Consensus 408 v~d~~~~~ 415 (507)
+||+.+++
T Consensus 390 iw~~~~g~ 397 (397)
T 1sq9_A 390 WFREAGGK 397 (397)
T ss_dssp EEEEEC--
T ss_pred EEEcCCCC
Confidence 99987753
No 72
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.9e-37 Score=297.64 Aligned_cols=241 Identities=14% Similarity=0.187 Sum_probs=182.0
Q ss_pred eeeeeeCC-CC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGY-HD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~-~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
|++++|+| ++ +++++.|+.|++||++++.......... +...+.+++|+|++.+|+++ +.||.|++||+.. +.+
T Consensus 167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g-~~dg~i~~wd~~~-~~~ 243 (435)
T 4e54_B 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDT-INIWFCSLDVSASSRMVVTG-DNVGNVILLNMDG-KEL 243 (435)
T ss_dssp CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSS-CSCCCCCEEEETTTTEEEEE-CSSSBEEEEESSS-CBC
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCC-CCccEEEEEECCCCCEEEEE-eCCCcEeeeccCc-cee
Confidence 44566665 23 6777899999999998776555554443 56678999999999999999 9999999999864 566
Q ss_pred EEEeecCccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcC--ceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEE
Q psy8285 245 QKLRTHMHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDY--PTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIW 318 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~ 318 (507)
..+.+|...|.+++| + ..+|++++.|+.|++||+++.+.. .....+|...|++++|+|++++|++++ |+.|++|
T Consensus 244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iw 323 (435)
T 4e54_B 244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323 (435)
T ss_dssp CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEE
Confidence 778899999999999 3 458899999999999999876532 233457899999999999999999999 7999999
Q ss_pred EcCCCCCCCCeeeecCCCC------CeeEEEEccCCCcEEEEEc---------cCCCCeEEEEeCCCCCeeeeeec-C-C
Q psy8285 319 DFRQLDAKRPQVNNQCHLS------AVKAIAWCPWEPTLLATGG---------GICDQTVRLWNSMNGKEKCHVKT-D-S 381 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~---------~~~d~~i~i~d~~~~~~~~~~~~-~-~ 381 (507)
|++++ .....+..|.. .+....|+|++..+++... +..++.|++||..+++.+..+.. + .
T Consensus 324 d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~ 400 (435)
T 4e54_B 324 SASQW---DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS 400 (435)
T ss_dssp ESSSS---SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCC
T ss_pred ECCCC---ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCC
Confidence 99987 55554444432 2334566666644444321 11256899999999998887653 3 5
Q ss_pred CeEEE-EECCCCCeEEEEeccCCCeEEEEeCCCccEE
Q psy8285 382 QVTSI-LWSEQYRELVTSHGKQDCSLKMWEYPRLHLI 417 (507)
Q Consensus 382 ~i~~~-~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~ 417 (507)
.|.++ +|+|+|++|++ |+ |+.|+|||+++++..
T Consensus 401 ~v~s~~~fspdg~~las--g~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 401 GISSLNEFNPMGDTLAS--AM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCCCEEEECTTSSCEEE--EC-SSEEEECCCC-----
T ss_pred cEEEEEEECCCCCEEEE--Ec-CCcEEEEECCcCeee
Confidence 67776 69999999988 65 789999999987653
No 73
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.9e-36 Score=286.24 Aligned_cols=238 Identities=19% Similarity=0.279 Sum_probs=194.3
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee--
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-- 243 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~-- 243 (507)
|.+++|+|++ +++++.|+.|++||+.+++........+ |...|.+++|+|++++|+++ +.|+.|++||+..++.
T Consensus 55 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~~~~ 132 (372)
T 1k8k_C 55 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-INRAARCVRWAPNEKKFAVG-SGSRVISICYFEQENDWW 132 (372)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC-CSSCEEEEEECTTSSEEEEE-ETTSSEEEEEEETTTTEE
T ss_pred ccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeec-CCCceeEEEECCCCCEEEEE-eCCCEEEEEEecCCCcce
Confidence 3445666655 6677899999999999888776666666 89999999999999999999 8999999999988763
Q ss_pred -EEEE-eecCccEEEEEe--eCCEEEEEecCCeEEEEECCC-----------------CCcCceeeecCCCceEEEEEcC
Q psy8285 244 -IQKL-RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRT-----------------HSDYPTAITREGDVVCGLKWSP 302 (507)
Q Consensus 244 -~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~-----------------~~~~~~~~~~~~~~v~~~~~~~ 302 (507)
...+ ..|...|.+++| ++++|++++.||.|++||++. .......+..|...|.+++|+|
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 212 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence 3333 468899999999 688999999999999999742 1124556668899999999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC--CCe------
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN--GKE------ 373 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~------ 373 (507)
++++|++++ |+.|++||++++ +.+..+..|..++.+++|+|++ .+++++. |+.|++|++.+ ++.
T Consensus 213 ~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~---d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 213 NGSRVAWVSHDSTVCLADADKK---MAVATLASETLPLLAVTFITES-SLVAAGH---DCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp SSSEEEEEETTTEEEEEEGGGT---TEEEEEECSSCCEEEEEEEETT-EEEEEET---TSSCEEEEEETTTTEEEECCCC
T ss_pred CCCEEEEEeCCCEEEEEECCCC---ceeEEEccCCCCeEEEEEecCC-CEEEEEe---CCeEEEEEccCcCceEEEeecc
Confidence 999999999 699999999988 7888888999999999999998 5666665 99999999987 420
Q ss_pred --------------------------e------eee-ecC-CCeEEEEEC-CCC---CeEEEEeccCCCeEEEEeCCCcc
Q psy8285 374 --------------------------K------CHV-KTD-SQVTSILWS-EQY---RELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 374 --------------------------~------~~~-~~~-~~i~~~~~s-~~~---~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
. ..+ ..+ ..|++++|. ++| ++|++ ++.||.|++||+++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s--~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT--TGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEE--EETTSEEEEEEHHHHH
T ss_pred CccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEE--ecCCCceEEEEecChh
Confidence 0 222 133 689999966 666 89998 8899999999987654
Q ss_pred E
Q psy8285 416 L 416 (507)
Q Consensus 416 ~ 416 (507)
.
T Consensus 364 ~ 364 (372)
T 1k8k_C 364 S 364 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 74
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8e-36 Score=287.77 Aligned_cols=282 Identities=16% Similarity=0.357 Sum_probs=233.1
Q ss_pred ceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 167 YTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 167 ~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
.|.++++..+.+++++.|+.|++||..+++....+. + |...|.+++| ++++|+++ +.||.|++||+.+++.+..
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~-h~~~v~~l~~--~~~~l~sg-~~dg~i~vwd~~~~~~~~~ 208 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT--G-HTGSVLCLQY--DERVIITG-SSDSTVRVWDVNTGEMLNT 208 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC--C-CSSCEEEEEC--CSSEEEEE-ETTSCEEEEESSSCCEEEE
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc--C-CCCcEEEEEE--CCCEEEEE-cCCCeEEEEECCCCcEEEE
Confidence 477788865558888999999999999888765544 4 9999999999 67899988 9999999999999999999
Q ss_pred EeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCc--eeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q psy8285 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYP--TAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 247 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 323 (507)
+..|...|.+++|+++.+++++.||.|++||+++..... ..+.+|...|.+++| +++++++++ |+.|++||++++
T Consensus 209 ~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~ 286 (435)
T 1p22_A 209 LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC 286 (435)
T ss_dssp ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred EcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC
Confidence 999999999999999999999999999999999876332 567789999999999 678999998 699999999988
Q ss_pred CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccC
Q psy8285 324 DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~ 402 (507)
+.+..+.+|...|.++.|+ + .++++++. |+.|++||+++++++..+..+ ..+.+++| ++++|++ |+.
T Consensus 287 ---~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s--g~~ 354 (435)
T 1p22_A 287 ---EFVRTLNGHKRGIACLQYR--D-RLVVSGSS--DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS--GAY 354 (435)
T ss_dssp ---CEEEEEECCSSCEEEEEEE--T-TEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE--EET
T ss_pred ---cEEEEEcCCCCcEEEEEeC--C-CEEEEEeC--CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE--EeC
Confidence 7888899999999999995 3 35555554 999999999999999998876 68999999 7888998 889
Q ss_pred CCeEEEEeCCCcc---------EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcc
Q psy8285 403 DCSLKMWEYPRLH---------LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSS 470 (507)
Q Consensus 403 d~~i~v~d~~~~~---------~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 470 (507)
||.|++||+.+++ .+..+.+|...|.+++| ++.+|++++.||.|++||+.+...........+...
T Consensus 355 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 429 (435)
T 1p22_A 355 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRT 429 (435)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------------------
T ss_pred CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccc
Confidence 9999999997766 78889999999999999 788999999999999999998776655444433333
No 75
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-36 Score=285.59 Aligned_cols=234 Identities=13% Similarity=0.186 Sum_probs=191.6
Q ss_pred eeeeeeCCC----C--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc-CCCeEEEEeCCCCcEEEEeCCC
Q psy8285 168 TSGLDWGYH----D--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP-RTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 168 i~~~~~s~~----~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
|.+++|+|+ + +++++.|+.|++||+.+++....+. + |...|.+++|+| ++.+|+++ +.||.|++||+.+
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~ 147 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--G-HGNAINELKFHPRDPNLLLSV-SKDHALRLWNIQT 147 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE--S-CCSCEEEEEECSSCTTEEEEE-ETTSCEEEEETTT
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec--C-CCCcEEEEEECCCCCCEEEEE-eCCCeEEEEEeec
Confidence 445566655 3 6677899999999999888765554 4 899999999999 88899988 8999999999999
Q ss_pred ceeEEEE---eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC---------------------------ceee
Q psy8285 241 ERLIQKL---RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY---------------------------PTAI 288 (507)
Q Consensus 241 ~~~~~~~---~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~---------------------------~~~~ 288 (507)
++.+..+ ..|...|.+++| ++++|++++.||.|++||+++.+.. ....
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 9998888 679999999999 6889999999999999999875411 1112
Q ss_pred ecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC-----------CCCeeeecCCCCCeeEEEEccC--CCcEEEE
Q psy8285 289 TREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDA-----------KRPQVNNQCHLSAVKAIAWCPW--EPTLLAT 354 (507)
Q Consensus 289 ~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~ 354 (507)
..|...|.+++|+ ++++++++ |+.|++||+++... ...+..+..|...|.+++|+|+ +. ++++
T Consensus 228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~ 304 (366)
T 3k26_A 228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLAL 304 (366)
T ss_dssp SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEE
T ss_pred cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEE
Confidence 2388999999999 67899888 69999999987621 0226667789999999999999 74 5555
Q ss_pred EccCCCCeEEEEeCCCCCeee----eeecC---CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 355 GGGICDQTVRLWNSMNGKEKC----HVKTD---SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 355 ~~~~~d~~i~i~d~~~~~~~~----~~~~~---~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
++. |+.|++||+.++++.. .+..+ ..|.+++|+|++++|++ ++.||.|++||+.
T Consensus 305 ~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~i~iwd~~ 365 (366)
T 3k26_A 305 GNQ--VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIA--VCDDASIWRWDRL 365 (366)
T ss_dssp ECT--TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEE--EETTSEEEEEEC-
T ss_pred Eec--CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEE--EeCCCEEEEEEec
Confidence 554 9999999999886443 55554 68999999999999999 7899999999975
No 76
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-37 Score=292.55 Aligned_cols=278 Identities=14% Similarity=0.240 Sum_probs=215.3
Q ss_pred ceeeeeeCCCC-EE-EEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce--
Q psy8285 167 YTSGLDWGYHD-TL-AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-- 242 (507)
Q Consensus 167 ~i~~~~~s~~~-~~-~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-- 242 (507)
.|.+++|+|++ ++ +++.|+.|++|++.++.......+.+ |...|.+++|+|++++|+++ +.|+.|++||+.+++
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~-s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSNRIVTC-SQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTCCEEEE-ETTSSEEEC------CC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCCEEEEE-eCCCeEEEEEcCCCCce
Confidence 47889999988 44 45589999999999885455556666 99999999999999999999 899999999999877
Q ss_pred -eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc--Cceeeec-CCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 243 -LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD--YPTAITR-EGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 243 -~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
....+..|...|.+++| ++++|++++.|+.|++||+++.+. ....+.. |...|.+++|+|++++|++++ |+.|
T Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i 170 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKA 170 (377)
T ss_dssp CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCE
T ss_pred eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEE
Confidence 66777889999999999 688999999999999999998653 3556666 999999999999999999999 6999
Q ss_pred EEEEcCCCCC---------------CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe----eee
Q psy8285 316 KIWDFRQLDA---------------KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE----KCH 376 (507)
Q Consensus 316 ~i~d~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~ 376 (507)
++||++.... .+.+..+ .|...|.+++|+|+++.+++.+. |+.|++||+++++. +..
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH---DSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET---TTEEC-CEECSTTSCEEECCC
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC---CCcEEEEECCCCCCcceeeEe
Confidence 9999963210 1234445 79999999999999976655544 99999999999987 667
Q ss_pred eecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc------------------------------EE------EE
Q psy8285 377 VKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH------------------------------LI------EE 419 (507)
Q Consensus 377 ~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~------------------------------~~------~~ 419 (507)
+..+ ..+.+++|+|++++|++ ++.++.+ +|+..... .+ ..
T Consensus 247 ~~~~~~~v~~~~~s~~~~~l~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (377)
T 3dwl_C 247 VKLSQLPLRSLLWANESAIVAA--GYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRST 323 (377)
T ss_dssp EECSSSCEEEEEEEETTEEEEE--ESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------------
T ss_pred ecCCCCceEEEEEcCCCCEEEE--EcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccccc
Confidence 7766 67999999999999988 6656555 77654211 00 00
Q ss_pred e----------------eccccceeEEEECCCC-C---EEEEEeCCCcEEEEec
Q psy8285 420 L----------------KIHQERILSAVLSPDQ-T---CVAAASADETISIWNC 453 (507)
Q Consensus 420 ~----------------~~~~~~i~~~~~s~~~-~---~l~s~~~dg~i~iw~~ 453 (507)
+ ..|...|+++++.+.. . .|+|++.||.|++||+
T Consensus 324 ~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 324 FRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 1 1288999999976643 3 6999999999999985
No 77
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=272.68 Aligned_cols=280 Identities=18% Similarity=0.185 Sum_probs=229.9
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|++|.+.|++++| |++++ |++|+ .|+.|+|||+.+++....+. +...
T Consensus 14 l~~h~~~v~~~~~-~~~~~-l~s~~--~dg~v~vw~~~~~~~~~~~~~~~~~---------------------------- 61 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSK-VASVS--RDGTVRLWSKDDQWLGTVVYTGQGF---------------------------- 61 (313)
T ss_dssp ECCCSSCEEEEEE-EETTE-EEEEE--TTSEEEEEEESSSEEEEEEEECSSC----------------------------
T ss_pred hhCCCCCcEEEEe-cCCCE-EEEEE--cCCcEEEEECCCCEEEEEeecCCcc----------------------------
Confidence 6899999999999 98887 88888 89999999998887665444 3333
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 62 -------------------------------------------------------------------------------- 61 (313)
T 3odt_A 62 -------------------------------------------------------------------------------- 61 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCce-eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEe
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT-QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd 237 (507)
+.+++|+|++ +++++.|+.|++|++..... .....+.+ |...|.++.| ++++++++ +.||.|++||
T Consensus 62 -------v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~l~~~-~~d~~i~~~d 130 (313)
T 3odt_A 62 -------LNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIG-HQGNVCSLSF--QDGVVISG-SWDKTAKVWK 130 (313)
T ss_dssp -------EEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECC-CSSCEEEEEE--ETTEEEEE-ETTSEEEEEE
T ss_pred -------EEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhh-cccCEEEEEe--cCCEEEEE-eCCCCEEEEc
Confidence 3345566655 66778999999999876532 22334455 8999999999 56788888 9999999999
Q ss_pred CCCceeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeec-CCCceEEEEEcCCCCEEEEEe-C
Q psy8285 238 EQEERLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITR-EGDVVCGLKWSPNGRYLASGS-N 312 (507)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-d 312 (507)
.++....+..|...+.++.| +++.+++++.|+.|++||... ....+.. |...+.+++|+|++. +++++ |
T Consensus 131 --~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d 204 (313)
T 3odt_A 131 --EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK---VIKTFSGIHNDVVRHLAVVDDGH-FISCSND 204 (313)
T ss_dssp --TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE---EEEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred --CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc---eEEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence 67888889999999999998 689999999999999999432 3444555 889999999999998 66776 6
Q ss_pred CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCC
Q psy8285 313 NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQ 391 (507)
Q Consensus 313 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~ 391 (507)
+.|++||++++ +.+..+..|...|.+++|+|++ .+++.+. |+.|++||+++++++..+..+ ..+.+++|+|+
T Consensus 205 g~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 277 (313)
T 3odt_A 205 GLIKLVDMHTG---DVLRTYEGHESFVYCIKLLPNG-DIVSCGE---DRTVRIWSKENGSLKQVITLPAISIWSVDCMSN 277 (313)
T ss_dssp SEEEEEETTTC---CEEEEEECCSSCEEEEEECTTS-CEEEEET---TSEEEEECTTTCCEEEEEECSSSCEEEEEECTT
T ss_pred CeEEEEECCch---hhhhhhhcCCceEEEEEEecCC-CEEEEec---CCEEEEEECCCCceeEEEeccCceEEEEEEccC
Confidence 99999999987 7888888999999999999998 5655444 999999999999999988877 58999999999
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
++ +++ ++.||.|++||+.+++.+...
T Consensus 278 ~~-~~~--~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 278 GD-IIV--GSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp SC-EEE--EETTSCEEEEESCGGGCCC--
T ss_pred CC-EEE--EeCCCcEEEEeCCCCceeehh
Confidence 98 555 578999999999987665443
No 78
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.3e-34 Score=280.30 Aligned_cols=275 Identities=15% Similarity=0.198 Sum_probs=237.7
Q ss_pred eeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 168 TSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 168 i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
+.++.++++.+++++.|+.|++||+.+++....+. + |...|.+++|+|++ .++++ +.||.|++||+.+++.+..+
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~--~-h~~~V~~l~~~~~~-~l~s~-s~dg~i~vwd~~~~~~~~~~ 199 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS--G-HDGGVWALKYAHGG-ILVSG-STDRTVRVWDIKKGCCTHVF 199 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC--C-CSSCEEEEEECSTT-EEEEE-ETTSCEEEEETTTTEEEEEE
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe--C-CCcCEEEEEEcCCC-EEEEE-eCCCCEEEEECCCCcEEEEE
Confidence 56788877668888999999999999988665544 5 99999999999988 88888 99999999999999999999
Q ss_pred eecCccEEEEEe----eCCEEEEEecCCeEEEEECCCCCcC----------------------ceeeecCCCceEEEEEc
Q psy8285 248 RTHMHQVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDY----------------------PTAITREGDVVCGLKWS 301 (507)
Q Consensus 248 ~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~----------------------~~~~~~~~~~v~~~~~~ 301 (507)
.+|...|.+++| ++.++++++.|+.|++||+++.... ...+.+|...+.++ +
T Consensus 200 ~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~ 277 (464)
T 3v7d_B 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--S 277 (464)
T ss_dssp CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--E
T ss_pred CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--c
Confidence 999999999998 3589999999999999999876522 33566788888776 5
Q ss_pred CCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 302 PNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 302 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
++++++++++ |+.|++||++++ +.+..+.+|...|.+++|+|++..+++ ++. |+.|++||+++++++..+..+
T Consensus 278 ~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s-g~~--dg~i~vwd~~~~~~~~~~~~h 351 (464)
T 3v7d_B 278 GHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERKRCIS-ASM--DTTIRIWDLENGELMYTLQGH 351 (464)
T ss_dssp EETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEETTTTEEEE-EET--TSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCCCCEEEEEEcCCCCEEEE-EeC--CCcEEEEECCCCcEEEEEeCC
Confidence 7789999999 699999999987 788888899999999999999865555 443 999999999999999998876
Q ss_pred -CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 381 -SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 381 -~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
..+.+++|+ ++++++ ++.||.|++||+.+++...... |...+..++|+|++++|++++ ||.|++||+.+++..
T Consensus 352 ~~~v~~~~~~--~~~l~s--~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 352 TALVGLLRLS--DKFLVS--AAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp SSCEEEEEEC--SSEEEE--EETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred CCcEEEEEEc--CCEEEE--EeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence 789999997 578888 7899999999999988766664 667788899999999999998 899999999998877
Q ss_pred cc
Q psy8285 460 RK 461 (507)
Q Consensus 460 ~~ 461 (507)
..
T Consensus 426 ~~ 427 (464)
T 3v7d_B 426 HA 427 (464)
T ss_dssp ES
T ss_pred eh
Confidence 64
No 79
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-36 Score=289.90 Aligned_cols=274 Identities=16% Similarity=0.206 Sum_probs=220.0
Q ss_pred ceeeeeeCC-CC--EEEEEcCCeEEEEECCC---Ccee-EEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC
Q psy8285 167 YTSGLDWGY-HD--TLAVALDTSVYTWNTKT---NKTQ-LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ 239 (507)
Q Consensus 167 ~i~~~~~s~-~~--~~~~~~~~~i~iw~~~~---~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~ 239 (507)
.|.+++|+| ++ +++++.|+.|++||+.+ +... ....+ + |...|.+++|+|++++|+++ +.||.|++||+.
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~l~s~-s~dg~i~vwd~~ 141 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-D-CSSTVTQITMIPNFDAFAVS-SKDGQIIVLKVN 141 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-E-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-c-CCCCEEEEEEeCCCCEEEEE-eCCCEEEEEEec
Confidence 366777888 65 66778999999999876 4311 12222 2 88999999999999999999 999999999994
Q ss_pred ---CceeEEEEee------------cCccEEEEEe----eCCEEEEEecCCeEEEEECCCCCcCceeeec--CCCceEEE
Q psy8285 240 ---EERLIQKLRT------------HMHQVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDYPTAITR--EGDVVCGL 298 (507)
Q Consensus 240 ---~~~~~~~~~~------------~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~ 298 (507)
+++....... +...+.++.+ ++.+|++++.|+.|++||+++.+ ....+.. |...|+++
T Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~~ 220 (437)
T 3gre_A 142 HYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-RLQIIENSPRHGAVSSI 220 (437)
T ss_dssp EEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-EEEEEECCGGGCCEEEE
T ss_pred cccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-eeEEEccCCCCCceEEE
Confidence 4444443332 4455666664 48899999999999999999876 4556666 78999999
Q ss_pred EEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeec-CCCCCeeEEEEccC---CCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 299 KWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQ-CHLSAVKAIAWCPW---EPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 299 ~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
+|+|++++|++++ |+.|++||++.+ +++..+. .|..+|.+++|+|. ...++++++. |+.|++||++++++
T Consensus 221 ~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~ 295 (437)
T 3gre_A 221 CIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS--KTFLTIWNFVKGHC 295 (437)
T ss_dssp EECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST--TEEEEEEETTTTEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEEEEeccccCCCccEEEEEcC--CCcEEEEEcCCCcE
Confidence 9999999999999 699999999987 6777665 67889999977763 2246666665 99999999999987
Q ss_pred eeeeecC---------------------------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec----
Q psy8285 374 KCHVKTD---------------------------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI---- 422 (507)
Q Consensus 374 ~~~~~~~---------------------------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~---- 422 (507)
+..+..+ ..|.+++|+ ++++|++ ++.|+.|++||+.+++.+..+.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s--~~~d~~i~~wd~~~~~~~~~~~~~~~~ 372 (437)
T 3gre_A 296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT--DEATSSIVMFSLNELSSSKAVISPSRF 372 (437)
T ss_dssp EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE--EGGGTEEEEEETTCGGGCEEEECC--C
T ss_pred EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe--cCCCCeEEEEECCCcccceEEeccccc
Confidence 7766532 347888999 7788888 88999999999999887776665
Q ss_pred ---------------------------------cccceeEEEECCC--CCEEEEEeCCCcEEEEe
Q psy8285 423 ---------------------------------HQERILSAVLSPD--QTCVAAASADETISIWN 452 (507)
Q Consensus 423 ---------------------------------~~~~i~~~~~s~~--~~~l~s~~~dg~i~iw~ 452 (507)
|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 373 SDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 7889999999998 77999999999999995
No 80
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.9e-36 Score=279.31 Aligned_cols=279 Identities=13% Similarity=0.091 Sum_probs=212.4
Q ss_pred ccceeeeeeCCCC-EEEE-Ec-------CCeEEEEECCCCce--------eEEEecCCCCCCceEEEEEccCCCeEEEE-
Q psy8285 165 DFYTSGLDWGYHD-TLAV-AL-------DTSVYTWNTKTNKT--------QLLVEYPTYDNAYISCVAWKPRTTDLAVT- 226 (507)
Q Consensus 165 ~~~i~~~~~s~~~-~~~~-~~-------~~~i~iw~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 226 (507)
.+.|.+++|+||+ ++++ |. ++.|++|++..+.. .....+.+ |...+.+++++ ++.++++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~-~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALED-NDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCT-TSCCCCEEEEE--TTEEEEEC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccC-CCCceEEEEeC--CCEEEEEE
Confidence 4568999999998 4444 33 23599999876532 12344566 78888888775 4566654
Q ss_pred ---------eCCCCcEEEEeCCCceeE----EEEe-----ecCccEEEEEe--eCCEEEEEe--cCCeEEEEECCCCCcC
Q psy8285 227 ---------NTCTEYIDLWHEQEERLI----QKLR-----THMHQVIAMCW--NGNLLSCGT--IGGNILHYDVRTHSDY 284 (507)
Q Consensus 227 ---------~~~dg~i~iwd~~~~~~~----~~~~-----~~~~~v~~~~~--~~~~l~~~~--~dg~i~i~d~~~~~~~ 284 (507)
++.|+.+++|++...... .... .+...+.+++| ||+++++++ .|++|++||+++.+ .
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~-~ 169 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT-E 169 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE-E
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc-E
Confidence 145778999998654321 1111 23445778888 788876554 68999999999876 3
Q ss_pred ceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCe--eeecCCCCCeeEEEEccCCCcEEEEEccCCCC-
Q psy8285 285 PTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQ--VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ- 361 (507)
Q Consensus 285 ~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~- 361 (507)
...+ .|...|.+++|+|||+++++++++.+.+|+..++ ... .....|...|.+++|+|++..+++.+. |+
T Consensus 170 ~~~~-~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~---d~~ 242 (365)
T 4h5i_A 170 KFEI-ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTG---SCIARKTDFDKNWSLSKINFIADDTVLIAASL---KKG 242 (365)
T ss_dssp EEEE-ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTC---CEEEEECCCCTTEEEEEEEEEETTEEEEEEEE---SSS
T ss_pred EEEe-CCCCceEEEEEccCCceEEeccceeEEEEEeccC---cceeeeecCCCCCCEEEEEEcCCCCEEEEEec---CCc
Confidence 3333 4778899999999999999999878888888776 333 234568889999999999966655544 54
Q ss_pred ---eEEEEeCCCCCe----eeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEe-eccccceeEEEE
Q psy8285 362 ---TVRLWNSMNGKE----KCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEEL-KIHQERILSAVL 432 (507)
Q Consensus 362 ---~i~i~d~~~~~~----~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~ 432 (507)
.+++|++..... ...+..+ ..|++++|+|+|++|++ |+.|+.|+|||+.+++++..+ .+|...|++++|
T Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las--gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 243 KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL--ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI 320 (365)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE--EETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred ceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE--EcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE
Confidence 688899877653 2334444 68999999999999999 889999999999999999875 789999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 433 SPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 433 s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+|||++|+++|.|++|+||++.+.
T Consensus 321 Spdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 321 SPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999643
No 81
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-34 Score=279.27 Aligned_cols=273 Identities=17% Similarity=0.282 Sum_probs=238.7
Q ss_pred ceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 167 YTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 167 ~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
.+.++.++.+.+++++.|+.|++||+.+++.... +.+ |...|.+++|+ ++.++++ +.||.|++||+.+++.+..
T Consensus 121 v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~--~~~-h~~~v~~~~~~--~~~l~s~-~~dg~i~vwd~~~~~~~~~ 194 (445)
T 2ovr_B 121 VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT--LVG-HTGGVWSSQMR--DNIIISG-STDRTLKVWNAETGECIHT 194 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE--CCC-CSSCEEEEEEE--TTEEEEE-ETTSCEEEEETTTTEEEEE
T ss_pred cEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE--EcC-CCCCEEEEEec--CCEEEEE-eCCCeEEEEECCcCcEEEE
Confidence 3567777766688889999999999998886544 445 99999999998 5688888 9999999999999999999
Q ss_pred EeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q psy8285 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDA 325 (507)
Q Consensus 247 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~ 325 (507)
+.+|...|.++.|+++.+++++.||.|++||+++++ ....+..|...+.+++| +++++++++ |+.|++||++++
T Consensus 195 ~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-- 269 (445)
T 2ovr_B 195 LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-- 269 (445)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT--
T ss_pred ECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC--
Confidence 999999999999999999999999999999999876 56677889999999999 678899988 699999999987
Q ss_pred CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCC
Q psy8285 326 KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
+.+..+.+|...|.++.| ++.. +++++. |+.|++||+++++++..+..+ ..+.++.+ +++++++ ++.||
T Consensus 270 -~~~~~~~~~~~~v~~~~~--~~~~-l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~--~~~dg 339 (445)
T 2ovr_B 270 -TCLHTLQGHTNRVYSLQF--DGIH-VVSGSL--DTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVS--GNADS 339 (445)
T ss_dssp -EEEEEECCCSSCEEEEEE--CSSE-EEEEET--TSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEE--EETTS
T ss_pred -cEeEEecCCCCceEEEEE--CCCE-EEEEeC--CCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEE--EeCCC
Confidence 788888899999999999 5544 445544 999999999999999888776 56777776 4678888 78999
Q ss_pred eEEEEeCCCccEEEEeec---cccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccce
Q psy8285 405 SLKMWEYPRLHLIEELKI---HQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKA 462 (507)
Q Consensus 405 ~i~v~d~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 462 (507)
.|++||+++++.+..+.. |...|.+++|+ +++|++++.||.|++||+.+++.....
T Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 340 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 999999999999999886 88899999995 579999999999999999998877765
No 82
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.4e-36 Score=276.33 Aligned_cols=246 Identities=18% Similarity=0.355 Sum_probs=202.0
Q ss_pred CCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce--eEEEEeecCccEEEEEee----CCEEEEEecCCeEEEEE
Q psy8285 204 PTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER--LIQKLRTHMHQVIAMCWN----GNLLSCGTIGGNILHYD 277 (507)
Q Consensus 204 ~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d 277 (507)
.+ |.+.|++++|+|++++|+++ +.|++|++||+.+++ .+..+.+|...|.+++|. +++|++++.|++|++||
T Consensus 10 ~~-H~~~V~~v~~s~~g~~lasg-s~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 10 TS-HEDMIHDAQMDYYGTRLATC-SSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEE-ETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred cc-ccCeEEEeeEcCCCCEEEEE-eCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 34 99999999999999999999 999999999998764 467788999999999992 78999999999999999
Q ss_pred CCCCC-cCceeeecCCCceEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCC-----
Q psy8285 278 VRTHS-DYPTAITREGDVVCGLKWSPN--GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWE----- 348 (507)
Q Consensus 278 ~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 348 (507)
++++. .....+.+|...|.+++|+|+ +.+|++++ |+.|++||++..........+.+|...+.+++|+|+.
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98764 234456789999999999998 78999998 6999999998752212234566799999999999973
Q ss_pred -----------CcEEEEEccCCCCeEEEEeCCCC---CeeeeeecC-CCeEEEEECCCC----CeEEEEeccCCCeEEEE
Q psy8285 349 -----------PTLLATGGGICDQTVRLWNSMNG---KEKCHVKTD-SQVTSILWSEQY----RELVTSHGKQDCSLKMW 409 (507)
Q Consensus 349 -----------~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~-~~i~~~~~s~~~----~~l~~~~g~~d~~i~v~ 409 (507)
..++++++. |++|++||++.. +++..+..| ..|.+++|+|++ ++|++ ++.|+.|++|
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~--D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las--~s~D~~v~iw 243 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGC--DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS--CSQDGRVFIW 243 (316)
T ss_dssp ---CCSCCCCCCCBEECCBT--TSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE--EETTCEEEEE
T ss_pred cccccccCccccceEEEecC--CCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE--EcCCCeEEEE
Confidence 145666654 999999999765 355566666 689999999987 77888 8899999999
Q ss_pred eCCCcc----EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 410 EYPRLH----LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 410 d~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
++.+.. ....+..|...|.+++|+|++++|++++.|+.|++|+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 987631 2234567889999999999999999999999999999863
No 83
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=274.32 Aligned_cols=287 Identities=18% Similarity=0.248 Sum_probs=228.1
Q ss_pred ccceeeeeeCC-CC--EEEEEcCCeEEEEECCCCceeEEEec-----------CCCCCCceEEEEEcc-CCCeEEEEeCC
Q psy8285 165 DFYTSGLDWGY-HD--TLAVALDTSVYTWNTKTNKTQLLVEY-----------PTYDNAYISCVAWKP-RTTDLAVTNTC 229 (507)
Q Consensus 165 ~~~i~~~~~s~-~~--~~~~~~~~~i~iw~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~-~~~~l~~~~~~ 229 (507)
...|++++|+| ++ +++++.|+.|++|++.+++....... .+ |...|.+++|+| ++.+|+++ +.
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~-~~ 120 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV-HRYSVETVQWYPHDTGMFTSS-SF 120 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTC-CSSCEEEEEECTTCTTCEEEE-ET
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccccccc-CCCcEEEEEEccCCCcEEEEE-eC
Confidence 34588999999 76 66777999999999998765443321 23 889999999999 66788888 89
Q ss_pred CCcEEEEeCCCceeEEEEeecCccEEEEEe-----eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC
Q psy8285 230 TEYIDLWHEQEERLIQKLRTHMHQVIAMCW-----NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG 304 (507)
Q Consensus 230 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 304 (507)
||.|++||+.+++....+. +...+.++.+ ++.++++++.++.|++||+++++ ....+..|...|.+++|+|++
T Consensus 121 d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~ 198 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-CSHILQGHRQEILAVSWSPRY 198 (408)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-CCEEECCCCSCEEEEEECSSC
T ss_pred CCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-eeeeecCCCCcEEEEEECCCC
Confidence 9999999999998887776 7788889888 34599999999999999999875 667788899999999999999
Q ss_pred C-EEEEEe-CCcEEEEEcCCCCCCCCeee---------------ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEe
Q psy8285 305 R-YLASGS-NNTVKIWDFRQLDAKRPQVN---------------NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 305 ~-~l~~~~-d~~i~i~d~~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
+ ++++++ |+.|++||++... ..+.. ...|...|.+++|+|++..+++.+. |+.|++||
T Consensus 199 ~~ll~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd 273 (408)
T 4a11_B 199 DYILATASADSRVKLWDVRRAS--GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT---DNRMRLWN 273 (408)
T ss_dssp TTEEEEEETTSCEEEEETTCSS--CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred CcEEEEEcCCCcEEEEECCCCC--cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC---CCeEEEEE
Confidence 8 588888 6999999998752 12222 2568899999999999866655544 99999999
Q ss_pred CCCCCeeeeeecC------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEE
Q psy8285 368 SMNGKEKCHVKTD------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAA 441 (507)
Q Consensus 368 ~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 441 (507)
+.+++........ ..+........+..+++ ++.++.|++||+.+++++..+.+|...|++++|+|++++|++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF--VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE--EEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred CCCCccceeccccccccccccceeEEecCCCceEEE--EecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 9998766544322 12222223334455555 567899999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEecCCCCcccce
Q psy8285 442 ASADETISIWNCFPRDKKRKA 462 (507)
Q Consensus 442 ~~~dg~i~iw~~~~~~~~~~~ 462 (507)
++.||.|++|++.+.++....
T Consensus 352 ~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 352 GSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp EETTSCEEEEEECC-------
T ss_pred ECCCCeEEEEeCCCCCccCCC
Confidence 999999999999988776543
No 84
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-36 Score=283.45 Aligned_cols=316 Identities=11% Similarity=0.087 Sum_probs=238.5
Q ss_pred ccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeeecCcccceeeccccccccccCCccCCceeEeecCCc
Q psy8285 4 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDRSSY 83 (507)
Q Consensus 4 gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
+-..+|.+|+|||||++ +||++ .|++|+ |...++++. .|...|.++.|+|++..
T Consensus 13 ~~~~~v~sv~~SpDG~~-iASas--~D~TV~--d~~~~~~l~--gh~~~v~~V~FsPdg~~------------------- 66 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTL-YLTTF--PDISIG--QPKYAKDIN--CNSKNLFHVKEFPLEFE------------------- 66 (588)
T ss_dssp CCSSSSCCEEECTTSCE-EEECS--SSEEEE--EECCCSCCS--SBGGGTEEEEEECCCCC-------------------
T ss_pred HhhccEEEEEECCCCCE-EEEEc--CCceee--cccccceec--CCCccEEEEEECCCCCc-------------------
Confidence 34688999999999996 99999 899999 766666552 38889999999987721
Q ss_pred cccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCCcc
Q psy8285 84 DSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSII 163 (507)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (507)
..|.+... . ....+. +.
T Consensus 67 ----~~~~~~~~---------------------------------~-----------------------~~~~~~---~~ 83 (588)
T 2j04_A 67 ----NKLDFELA---------------------------------Q-----------------------QNGLLN---SQ 83 (588)
T ss_dssp ----CTTTTSCC---------------------------------C-----------------------SSCSST---TS
T ss_pred ----ceEEEEeC---------------------------------C-----------------------CceEee---cC
Confidence 11111110 0 000000 01
Q ss_pred cccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCC----CCceEEEEEccCCCeEEEEeCCCCcEEEEe
Q psy8285 164 NDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYD----NAYISCVAWKPRTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 164 ~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd 237 (507)
..-+|.+++|||++ +++++.||.|++|+.++ ...... . + ...+.+++|+|+|++|+++ +.||+|++||
T Consensus 84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~--~-~~~~~~~sv~svafSPDG~~LAsg-s~DGtVkIWd 157 (588)
T 2j04_A 84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD--S-KGNLSSRTYHCFEWNPIESSIVVG-NEDGELQFFS 157 (588)
T ss_dssp CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC--C-SSCSTTTCEEEEEECSSSSCEEEE-ETTSEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc--C-CCccccccEEEEEEcCCCCEEEEE-cCCCEEEEEE
Confidence 13468899999998 66677999999999644 222222 1 2 2369999999999999999 9999999999
Q ss_pred CCCce-------eEEEE----eecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcC--ceee-ecCCCceEEEEEcCC
Q psy8285 238 EQEER-------LIQKL----RTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDY--PTAI-TREGDVVCGLKWSPN 303 (507)
Q Consensus 238 ~~~~~-------~~~~~----~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~-~~~~~~v~~~~~~~~ 303 (507)
+.+++ .+..+ .+|...|.+++|..+-+++++.|+.|++||+.+.... ...+ .+|...|.+++|+
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-- 235 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-- 235 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence 99875 35666 5677899999994222889999999999999886621 2345 4788899999999
Q ss_pred CCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEE--ccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC
Q psy8285 304 GRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAW--CPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381 (507)
Q Consensus 304 ~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 381 (507)
++.||++++++|++||+..+ +......+|...+..++| +|++ ..++++.+ ||+ ++|...
T Consensus 236 g~~LASa~~~tIkLWd~~~~---~~~~~~~gh~~~V~~va~~~s~d~-~~La~a~e--dG~-klw~~d------------ 296 (588)
T 2j04_A 236 DYKVVLTCPGYVHKIDLKNY---SISSLKTGSLENFHIIPLNHEKES-TILLMSNK--TSY-KVLLED------------ 296 (588)
T ss_dssp TTEEEEECSSEEEEEETTTT---EEEEEECSCCSCCCEEEETTCSSC-EEEEECSS--CEE-EEEESS------------
T ss_pred CCEEEEEeCCeEEEEECCCC---eEEEEEcCCCceEEEEEeeeCCCC-CEEEEEcC--CCC-EEEeec------------
Confidence 68999998999999999875 442333379999999999 9998 45555554 899 999976
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeC
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
.++++|++..++. . |+.+++|+..... +..+.+ ...|.+++|||||+.+|+++.
T Consensus 297 ---~~~~spd~~l~a~--~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ---ELHVTADNIIAPY--L--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ---SEEEECCCSSHHH--H--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred ---cEEECCCceEEEE--c--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 2669999988876 3 9999999975443 445554 677999999999999998873
No 85
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-36 Score=283.39 Aligned_cols=232 Identities=14% Similarity=0.261 Sum_probs=173.6
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCc-eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce--
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNK-TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-- 242 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-- 242 (507)
|.+++|+|++ +++++.|+.|++||+.+++ ......+.+ |...|.+++|+|++++|+++ +.|+.|++||+.+++
T Consensus 58 v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~ 135 (377)
T 3dwl_C 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLR-LNRAATFVRWSPNEDKFAVG-SGARVISVCYFEQENDW 135 (377)
T ss_dssp EEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCC-CSSCEEEEECCTTSSCCEEE-ESSSCEEECCC-----C
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecc-cCCceEEEEECCCCCEEEEE-ecCCeEEEEEECCcccc
Confidence 4456777765 7777899999999999877 344455555 89999999999999999999 899999999999887
Q ss_pred -eEEEEee-cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC-----------------cCceeeecCCCceEEEEEc
Q psy8285 243 -LIQKLRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS-----------------DYPTAITREGDVVCGLKWS 301 (507)
Q Consensus 243 -~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~~~~~v~~~~~~ 301 (507)
....+.. |...|.+++| ++++|++++.|+.|++||++... .....+ .|...|.+++|+
T Consensus 136 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s 214 (377)
T 3dwl_C 136 WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS 214 (377)
T ss_dssp CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC
T ss_pred eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC
Confidence 4677777 9999999999 68899999999999999986322 122233 788999999999
Q ss_pred CCCCEEEEEe-CCcEEEEEcCCCCCCCC----eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--ee
Q psy8285 302 PNGRYLASGS-NNTVKIWDFRQLDAKRP----QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EK 374 (507)
Q Consensus 302 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~ 374 (507)
|++++|++++ |+.|++||++++ .. +..+..|...|.+++|+|++ .++++++ ++.+.+|+..... ..
T Consensus 215 p~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~---~~~~~~~~~~~~~~~~~ 287 (377)
T 3dwl_C 215 PSGNALAYAGHDSSVTIAYPSAP---EQPPRALITVKLSQLPLRSLLWANES-AIVAAGY---NYSPILLQGNESGWAHT 287 (377)
T ss_dssp TTSSCEEEEETTTEEC-CEECST---TSCEEECCCEECSSSCEEEEEEEETT-EEEEEES---SSSEEEECCCC---CCS
T ss_pred CCCCEEEEEeCCCcEEEEECCCC---CCcceeeEeecCCCCceEEEEEcCCC-CEEEEEc---CCcEEEEEeCCCceEEE
Confidence 9999999999 699999999987 55 67788899999999999998 5667776 5555577765211 00
Q ss_pred ----------------------------------eeee-----------------cCCCeEEEEECCCCC----eEEEEe
Q psy8285 375 ----------------------------------CHVK-----------------TDSQVTSILWSEQYR----ELVTSH 399 (507)
Q Consensus 375 ----------------------------------~~~~-----------------~~~~i~~~~~s~~~~----~l~~~~ 399 (507)
..+. +...|+++++.+... .+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s-- 365 (377)
T 3dwl_C 288 RDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTS-- 365 (377)
T ss_dssp BCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEE--
T ss_pred eeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEe--
Confidence 0010 336789998766543 4777
Q ss_pred ccCCCeEEEEeC
Q psy8285 400 GKQDCSLKMWEY 411 (507)
Q Consensus 400 g~~d~~i~v~d~ 411 (507)
++.||.|++||+
T Consensus 366 ~g~Dg~i~iWdl 377 (377)
T 3dwl_C 366 SGTDGRVVLWTL 377 (377)
T ss_dssp EETTSEEEEECC
T ss_pred ecCCCcEEEecC
Confidence 789999999985
No 86
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=281.02 Aligned_cols=281 Identities=12% Similarity=0.214 Sum_probs=221.1
Q ss_pred cccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCce---------eEEEecCCCCC------------CceEEEEEcc
Q psy8285 162 IINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT---------QLLVEYPTYDN------------AYISCVAWKP 218 (507)
Q Consensus 162 ~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~---------~~~~~~~~~~~------------~~v~~~~~~~ 218 (507)
+.+.-.|.+++|+|++ +++++.|+.|++|++.+++. .....+.+ |. ..|.+++|+|
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-ccccccccccccccCceEEEEEcC
Confidence 3445579999999988 56667999999999987652 12334445 87 8899999999
Q ss_pred CC--CeEEEEeCCCCcEEEEeCCCceeE---------------------------------------EE-EeecCccEEE
Q psy8285 219 RT--TDLAVTNTCTEYIDLWHEQEERLI---------------------------------------QK-LRTHMHQVIA 256 (507)
Q Consensus 219 ~~--~~l~~~~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~ 256 (507)
++ ..|+++ +.|+.|++||+.+++.. .. ..+|...|.+
T Consensus 104 ~~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 104 QKNAAQFLLS-TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCSSSEEEEE-ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCcceEEEe-CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 98 788888 89999999998765432 12 3579999999
Q ss_pred EEe--eCCEEEEEecCCeEEEEECCCCCcCce-------eeecCCCceEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCC
Q psy8285 257 MCW--NGNLLSCGTIGGNILHYDVRTHSDYPT-------AITREGDVVCGLKWSPNG-RYLASGS-NNTVKIWDFRQLDA 325 (507)
Q Consensus 257 ~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~ 325 (507)
++| ++++|+++ .|+.|++||++....... .+..|...|.+++|+|++ ++|++++ |+.|++||++++..
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 999 68899998 799999999985332222 356889999999999998 9999999 69999999998721
Q ss_pred -CCCeeeecCCCC------------CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-CCeeeeeecCCC---------
Q psy8285 326 -KRPQVNNQCHLS------------AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-GKEKCHVKTDSQ--------- 382 (507)
Q Consensus 326 -~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~--------- 382 (507)
......+..|.. .|.+++|+|++. ++++++ ++.|++||+++ ++++..+..+..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRD---YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEE---SSEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEee---CCeEEEEeCCCCccccceeeccccccccccccc
Confidence 112677777775 899999999985 555665 59999999997 888888876643
Q ss_pred -------eEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec---------------------------------
Q psy8285 383 -------VTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI--------------------------------- 422 (507)
Q Consensus 383 -------i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--------------------------------- 422 (507)
+..++|+|++++|++ |+.||.|++||+.+++.+. +..
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s--~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMT--GSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLD 414 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEE--ECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCC
T ss_pred cccccccceEEEECCCCCEEEE--eccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccc
Confidence 334999999999998 8899999999999887653 222
Q ss_pred cccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 423 HQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 423 ~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
+...|..++|+|++.+|++++.++ +++|.-
T Consensus 415 ~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 415 FNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 235688999999999999998875 788864
No 87
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.4e-35 Score=279.68 Aligned_cols=281 Identities=16% Similarity=0.209 Sum_probs=228.5
Q ss_pred eeeeeeCCCCE--EE-EEcCCeEEEEECCCCcee--EEEecCCCCCCceEEEEEcc-CCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 168 TSGLDWGYHDT--LA-VALDTSVYTWNTKTNKTQ--LLVEYPTYDNAYISCVAWKP-RTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 168 i~~~~~s~~~~--~~-~~~~~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
.+.++++|+.. ++ ++.+|.|++|++...... ....+.+ |...|.+++|+| ++++|+++ +.||.|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~~l~s~-s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCG-HTAPVLDIAWCPHNDNVIASG-SEDCTVMVWEIPDG 114 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCC-CSSCEEEEEECTTCTTEEEEE-ETTSEEEEEECCTT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEec-CCCCEEEEEeCCCCCCEEEEE-eCCCeEEEEEccCC
Confidence 44588888872 22 468999999998664321 2333556 999999999999 88999998 99999999999987
Q ss_pred -------eeEEEEeecCccEEEEEe--eC-CEEEEEecCCeEEEEECCCCCcCceee--ecCCCceEEEEEcCCCCEEEE
Q psy8285 242 -------RLIQKLRTHMHQVIAMCW--NG-NLLSCGTIGGNILHYDVRTHSDYPTAI--TREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 242 -------~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~ 309 (507)
+.+..+.+|...|.+++| ++ ++|++++.|+.|++||+++++ ....+ ..|...|.+++|+|++++|++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 193 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGALICT 193 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCCEEEE
Confidence 567888999999999999 44 699999999999999999876 45556 679999999999999999999
Q ss_pred Ee-CCcEEEEEcCCCCCCCCeeee-cCCCCC-eeEEEEccCCCcEEEEE-ccCCCCeEEEEeCCCCCe-ee--eeecCCC
Q psy8285 310 GS-NNTVKIWDFRQLDAKRPQVNN-QCHLSA-VKAIAWCPWEPTLLATG-GGICDQTVRLWNSMNGKE-KC--HVKTDSQ 382 (507)
Q Consensus 310 ~~-d~~i~i~d~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~-~~--~~~~~~~ 382 (507)
++ |+.|++||++++ +.+..+ ..|.+. +.++.|+|++ .+++++ ..+.|+.|++||+++++. +. .+.+...
T Consensus 194 ~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 269 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKG---TVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG 269 (402)
T ss_dssp EETTSEEEEEETTTT---EEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS
T ss_pred EecCCcEEEEeCCCC---ceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc
Confidence 99 699999999987 677776 677765 8999999998 566665 111399999999998765 33 3334578
Q ss_pred eEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE-EEEeec--cccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 383 VTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL-IEELKI--HQERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~-~~~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
+.+++|+|++++|+++ |+.|+.|++||+.++++ +..+.. |...|.+++|+|++.++++ .++.+++|++.+++.
T Consensus 270 v~~~~~s~~~~~l~~~-g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 270 VLLPFFDPDTNIVYLC-GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp CEEEEEETTTTEEEEE-ETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred eeEEEEcCCCCEEEEE-EcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 9999999999999764 67899999999998874 555544 4589999999999998764 567999999987543
No 88
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=287.06 Aligned_cols=284 Identities=10% Similarity=0.091 Sum_probs=209.6
Q ss_pred EEcCCeEEEEECCCCceeE--EEecCCCCCCceEEEEEccC------CCeEEEEeCCCCcEEEEeCCCcee---------
Q psy8285 181 VALDTSVYTWNTKTNKTQL--LVEYPTYDNAYISCVAWKPR------TTDLAVTNTCTEYIDLWHEQEERL--------- 243 (507)
Q Consensus 181 ~~~~~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~~dg~i~iwd~~~~~~--------- 243 (507)
++.|+.|+||++.+++... ...+.+ |.+.|.+++|+|+ +.+||++ +.||+|++||+.+++.
T Consensus 179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~-~~~~V~~v~wsp~~~~~~~~~~LAs~-s~DgtvrlWd~~~~~~~~~~~~~~~ 256 (524)
T 2j04_B 179 EKHSSCIQIFKMNTSTLHCVKVQTIVH-SFGEVWDLKWHEGCHAPHLVGCLSFV-SQEGTINFLEIIDNATDVHVFKMCE 256 (524)
T ss_dssp ---CEEEEEEEEETTTCCEEEEEEEEE-CCCSEEEEEECSSCCCSSSSCEEEEE-ETTSCEEEEECCCCSSSSSEEECCC
T ss_pred CCCCceEEEEEccCCCCCceEEEEEEe-cCCcEEEEEECCCCCCCCCCceEEEE-ecCCeEEEEEcCCCccccccceeec
Confidence 3467899999998776422 222333 7788999999997 4688888 9999999999986632
Q ss_pred --EEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEE--EEcCCC-CEEEEEe-CCcEE
Q psy8285 244 --IQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGL--KWSPNG-RYLASGS-NNTVK 316 (507)
Q Consensus 244 --~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~-d~~i~ 316 (507)
...+.+|...|.+++| .+..|++|+.||+|++||++++..+...+..|...|.++ +|+|++ ++|++++ |++|+
T Consensus 257 ~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 257 KPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp SCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred CceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 2467789999999999 567999999999999999997755566788999999999 578887 8999999 79999
Q ss_pred EEEcCCCCCCCCeeeecCCCC--CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCC
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLS--AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYR 393 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~ 393 (507)
+||++++ +....+.+|.. .|.+++|+|++..+ ++++. |++|++||++++.++..+..+ ..|.+++|+|+++
T Consensus 337 lWD~~~~---~~~~~~~~~~~~~~v~~v~fsp~~~~l-~s~~~--d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~ 410 (524)
T 2j04_B 337 IFNPKDI---ATTKTTVSRFRGSNLVPVVYCPQIYSY-IYSDG--ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP 410 (524)
T ss_dssp EECGGGH---HHHCEEEEECSCCSCCCEEEETTTTEE-EEECS--SSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCC
T ss_pred EEECCCC---CcccccccccccCcccceEeCCCcCeE-EEeCC--CCcEEEEECcccccceeeecCCCceEEEEeCCCCC
Confidence 9999986 55555555543 58899999998654 44444 999999999999987777766 7899999999999
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEeec-----cccceeEEEECCCCCEEEEEeCCCcEEEEecC-CCCccc-ceeecC
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKI-----HQERILSAVLSPDQTCVAAASADETISIWNCF-PRDKKR-KARQVG 466 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~-~~~~~~-~~~~~~ 466 (507)
+|++ |+.|+.|++||+... .+..+.. +...+.+++|+|+++.+. ...+ +.+|+.. ++.... ......
T Consensus 411 ~l~S--gs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~gh~~ 484 (524)
T 2j04_B 411 MVLA--GSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDAHGI 484 (524)
T ss_dssp BCEE--EETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC-------------CCC
T ss_pred eEEE--EECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecCCCc
Confidence 9999 889999999998653 2222111 112578999999998552 3222 3344332 222222 233456
Q ss_pred CCcceEEeeccC
Q psy8285 467 SGSSLEFAILKQ 478 (507)
Q Consensus 467 ~~~~~~~~~~~~ 478 (507)
.+.++.|.|+..
T Consensus 485 ~V~~Vafsp~~~ 496 (524)
T 2j04_B 485 NITCTKWNETSA 496 (524)
T ss_dssp SCCCEEECCSTT
T ss_pred eEEEEECCCCCC
Confidence 778888888653
No 89
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.9e-33 Score=260.90 Aligned_cols=303 Identities=18% Similarity=0.275 Sum_probs=236.6
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccC-CCeEEEEeCCCCcEEEEeCCCc-----eeEEEEeecCccEEEEEe
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR-TTDLAVTNTCTEYIDLWHEQEE-----RLIQKLRTHMHQVIAMCW 259 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~ 259 (507)
.++++.....+.....++.| |.+.|++++|+|+ +++|+++ +.|++|+|||+.+. .+...+.+|...|.+++|
T Consensus 17 ~~~~~~~~~~~~~l~~tL~G-H~~~V~~v~~sp~~~~~l~S~-s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKG-HNGWVTQIATTPQFPDMILSA-SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 94 (340)
T ss_dssp ---------CEEEEEEEECC-CSSCEEEEEECTTCTTEEEEE-ETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEE
T ss_pred cEEEEEccCCceEEEEEECC-ccCCEEEEEEeCCCCCEEEEE-cCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEE
Confidence 35555555555555566888 9999999999998 5678888 99999999998764 356778899999999999
Q ss_pred --eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCC
Q psy8285 260 --NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHL 336 (507)
Q Consensus 260 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~ 336 (507)
++++|++++.|+.|++|+..... .......+...+....+++++++|++++ |+.+++||+... ........+|.
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~--~~~~~~~~~~~ 171 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV--CKYTVQDESHS 171 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--EEEEECSSSCS
T ss_pred CCCCCEEEEEcccccceEEeecccc-eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC--ceEEEEecccc
Confidence 78999999999999999998865 4556667788899999999999999999 699999998764 12344556789
Q ss_pred CCeeEEEEccCCCc-EEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 337 SAVKAIAWCPWEPT-LLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 337 ~~v~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
..+..++|++++.. ++++++. |+.|++||+++++.+..+..+ ..|.+++|+|++++|++ |+.|+.|++||+++.
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~~~--d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSCGW--DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS--GGKDGQAMLWDLNEG 247 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE--EETTCEEEEEETTTT
T ss_pred CcccceEEccCCCCcEEEEEcC--CCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE--EeCCCeEEEEEeccC
Confidence 99999999987644 5555554 999999999999998888776 78999999999999999 889999999999999
Q ss_pred cEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceee----------cCCCcceEEeeccCccccce
Q psy8285 415 HLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQ----------VGSGSSLEFAILKQPVSLTA 484 (507)
Q Consensus 415 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 484 (507)
+++..+.. ...|..+.|+|++.+ ++++.|+.|++||+.+......... ...+.++.|.+ ++
T Consensus 248 ~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-------dg 318 (340)
T 4aow_A 248 KHLYTLDG-GDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-------DG 318 (340)
T ss_dssp EEEEEEEC-SSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-------TS
T ss_pred ceeeeecC-CceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-------CC
Confidence 99988875 467999999998765 5566799999999987765544321 22333444444 34
Q ss_pred eeeecccccccceeEEeeeccc
Q psy8285 485 LLRSRAVEKQQHAIAYTVFGEA 506 (507)
Q Consensus 485 ~~~~~~~~~~~~~i~~~~~g~~ 506 (507)
...+.+..+..+.+.-+++|++
T Consensus 319 ~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 319 QTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp SEEEEEETTSCEEEEEEEC---
T ss_pred CEEEEEeCCCEEEEEeCCCcCC
Confidence 4556677788888888888875
No 90
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-33 Score=264.63 Aligned_cols=252 Identities=16% Similarity=0.320 Sum_probs=211.3
Q ss_pred CCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc----eeEEEEeecCccEEEEEe----eCCEEEEEecCCeEEE
Q psy8285 204 PTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE----RLIQKLRTHMHQVIAMCW----NGNLLSCGTIGGNILH 275 (507)
Q Consensus 204 ~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i 275 (507)
.+ |.+.|++++|+|++++|+++ +.||.|++||+.++ +....+.+|...|.+++| ++++|++++.||.|++
T Consensus 8 ~g-H~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 8 SG-HDDLVHDVVYDFYGRHVATC-SSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp CC-CSSCEEEEEECSSSSEEEEE-ETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cc-cccceeEEEEcCCCCEEEEe-eCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 44 99999999999999999999 99999999999876 467778899999999999 3789999999999999
Q ss_pred EECCCCC--------cCceeeecCCCceEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCCCCee----------eecC
Q psy8285 276 YDVRTHS--------DYPTAITREGDVVCGLKWSPN--GRYLASGS-NNTVKIWDFRQLDAKRPQV----------NNQC 334 (507)
Q Consensus 276 ~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~----------~~~~ 334 (507)
||++.+. .....+..|...|.+++|+|+ ++++++++ |+.|++||++++....... ....
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence 9998764 235566789999999999999 99999998 6999999999873322221 1125
Q ss_pred CCCCeeEEEEccC---CCcEEEEEccCCCCeEEEEeCCCCCe--eeeeecC-CCeEEEEECCCC----CeEEEEeccCCC
Q psy8285 335 HLSAVKAIAWCPW---EPTLLATGGGICDQTVRLWNSMNGKE--KCHVKTD-SQVTSILWSEQY----RELVTSHGKQDC 404 (507)
Q Consensus 335 ~~~~v~~~~~~~~---~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~-~~i~~~~~s~~~----~~l~~~~g~~d~ 404 (507)
|...+.+++|+|+ + .++++++. ++.+.+|+...++. +..+..+ ..|.+++|+|++ ++|++ ++.||
T Consensus 166 ~~~~~~~~~~~p~~~~~-~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s--~~~dg 240 (351)
T 3f3f_A 166 HLQSDFCLSWCPSRFSP-EKLAVSAL--EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT--GCKDG 240 (351)
T ss_dssp CSCCCEEEEECCCSSSC-CEEEEEET--TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE--EETTS
T ss_pred cccceeEEEeccCCCCC-cEEEEecC--CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE--EcCCC
Confidence 7889999999997 5 45555554 89998888877765 4555554 689999999998 78888 88999
Q ss_pred eEEEEeCCCc----------------------------------------------cEEEEeeccccceeEEEECCCCCE
Q psy8285 405 SLKMWEYPRL----------------------------------------------HLIEELKIHQERILSAVLSPDQTC 438 (507)
Q Consensus 405 ~i~v~d~~~~----------------------------------------------~~~~~~~~~~~~i~~~~~s~~~~~ 438 (507)
.|++||++++ +.+..+.+|...|++++|+|++++
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 9999999764 667778889999999999999999
Q ss_pred EEEEeCCCcEEEEecCCCCcccce
Q psy8285 439 VAAASADETISIWNCFPRDKKRKA 462 (507)
Q Consensus 439 l~s~~~dg~i~iw~~~~~~~~~~~ 462 (507)
|++++.||.|++|++.+++....+
T Consensus 321 l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEecCCCcEEEEecCcCcchhhe
Confidence 999999999999999987765543
No 91
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.9e-33 Score=262.42 Aligned_cols=271 Identities=14% Similarity=0.131 Sum_probs=226.3
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCc----eeEEEecCCCCCCceEEEEEccCCC-eEEEEeCCCCcEEEEe
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNK----TQLLVEYPTYDNAYISCVAWKPRTT-DLAVTNTCTEYIDLWH 237 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd 237 (507)
...|.+++|+|++ +++++.|+.|++|++.+++ ..... + |...|.+++|+|+++ +|+++ +.||.|++||
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~~-~~dg~i~~wd 85 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL---R-YKHPLLCCNFIDNTDLQIYVG-TVQGEILKVD 85 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE---E-CSSCEEEEEEEESSSEEEEEE-ETTSCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee---e-cCCceEEEEECCCCCcEEEEE-cCCCeEEEEE
Confidence 3458899999987 6677799999999998877 33222 3 889999999999999 89998 8999999999
Q ss_pred C-CCceeEEEEee--cCccEEEEEee-CCEEEEEecCCeEEEEECCC---------CCcCceeeecCCCceEEEEEcCCC
Q psy8285 238 E-QEERLIQKLRT--HMHQVIAMCWN-GNLLSCGTIGGNILHYDVRT---------HSDYPTAITREGDVVCGLKWSPNG 304 (507)
Q Consensus 238 ~-~~~~~~~~~~~--~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~v~~~~~~~~~ 304 (507)
+ .+++. ..+.. |...|.+++|. ++.|++++.|+.|++||+++ .+ +...+. |...+.+++|+|++
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NSNNTK-VKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES-CSSSSS-SCCCEEEEEECSSE
T ss_pred eccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCC-eeeEEe-eCCceEEEEecCCc
Confidence 9 77654 67778 99999999996 89999999999999999986 44 333343 88899999999987
Q ss_pred CEEEEEe-CCcEEEEEcCC-CCCCCCeeeecCCCCCeeEEEEcc-CCCcEEEEEccCCCCeEEEEeCCCC------Ceee
Q psy8285 305 RYLASGS-NNTVKIWDFRQ-LDAKRPQVNNQCHLSAVKAIAWCP-WEPTLLATGGGICDQTVRLWNSMNG------KEKC 375 (507)
Q Consensus 305 ~~l~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~------~~~~ 375 (507)
+++++ ++.|++||++. +.. ........|...+.+++|+| ++..+++ ++. |+.|++|+++.. +...
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~-~~~--dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRDVALLPKEQEGYAC-SSI--DGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTC-CCEEEECSCSSCEEEEEECSGGGCEEEE-EET--TSEEEEEECCTTCCSTTCTTCE
T ss_pred --EEEEeCCCeEEEEECCccccc-cceeeecCCCCceeEEEECCCCCCEEEE-Eec--CCcEEEEEEcCCCcccccccce
Confidence 66666 69999999987 421 23334456888999999999 8865554 443 999999999887 6677
Q ss_pred eeecC-C---------CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc-ccceeEEEECCCCCEEEEEeC
Q psy8285 376 HVKTD-S---------QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-QERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 376 ~~~~~-~---------~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~~~ 444 (507)
.+..+ . .+.+++|+|++++|++ ++.||.|++||+.+++.+..+.+| ...|.+++ |++++|++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~ 312 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATS 312 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEE
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEE--ecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEec
Confidence 77655 2 8999999999999999 789999999999999999999998 99999999 99999999999
Q ss_pred CCc-EEEEec
Q psy8285 445 DET-ISIWNC 453 (507)
Q Consensus 445 dg~-i~iw~~ 453 (507)
||. .+.|..
T Consensus 313 Dg~~~~~~~~ 322 (342)
T 1yfq_A 313 DDTFKTNAAI 322 (342)
T ss_dssp CTHHHHCSSS
T ss_pred CCcccccccc
Confidence 998 555553
No 92
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3e-33 Score=268.41 Aligned_cols=252 Identities=17% Similarity=0.292 Sum_probs=198.2
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-eeE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-RLI 244 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-~~~ 244 (507)
|++++|+|++ +++++.|+.|++||+.+++..... .+ |...+.++.++ +..|+++ +.|+.+++||.... ..+
T Consensus 150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~--~~-h~~~v~~~s~~--~~~l~sg-s~d~~i~~~d~~~~~~~~ 223 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM--TS-HSARVGSLSWN--SYILSSG-SRSGHIHHHDVRVAEHHV 223 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CC-CSSCEEEEEEE--TTEEEEE-ETTSEEEEEETTSSSCEE
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE--eC-CCCceEEEeeC--CCEEEEE-eCCCceeEeeecccceee
Confidence 5567777776 666789999999999998876554 44 89999998875 5688888 99999999998864 456
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc---CceeeecCCCceEEEEEcCCC-CEEEEEe---CCcE
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD---YPTAITREGDVVCGLKWSPNG-RYLASGS---NNTV 315 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~---d~~i 315 (507)
..+.+|...+..+.| ++.++++++.|+.+++|+...++. .......|...|.+++|+|++ .++++++ |+.|
T Consensus 224 ~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred EEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence 778899999999999 789999999999999999987652 345667889999999999965 4555543 6999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCe
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRE 394 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~ 394 (507)
++||++++ .....+. +...+.++.|+|++..++++++ ..|+.|++||+.+++++..+.+| ..|.+++|+|+|++
T Consensus 304 ~iwd~~t~---~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg-~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~ 378 (420)
T 4gga_A 304 RIWNVCSG---ACLSAVD-AHSQVCSILWSPHYKELISGHG-FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 378 (420)
T ss_dssp EEEETTTT---EEEEEEE-CSSCEEEEEEETTTTEEEEEEC-TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred EEEeCCcc---ccceeec-cccceeeeeecCCCCeEEEEEe-cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 99999987 6666666 4567899999999977766543 35899999999999999999887 78999999999999
Q ss_pred EEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEE
Q psy8285 395 LVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVL 432 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 432 (507)
|++ |+.|++|+|||+....+......+...+....+
T Consensus 379 l~S--~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 379 VAS--AAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EEE--EETTTEEEEECCSCSSCC---------------
T ss_pred EEE--EecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 999 889999999999877666665555544433333
No 93
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.4e-34 Score=269.83 Aligned_cols=224 Identities=9% Similarity=0.053 Sum_probs=174.3
Q ss_pred EcCCeEEEEECCCCcee-E-E--Ee---cCCCCCCceEEEEEccCCCeEEEE-eCCCCcEEEEeCCCceeEEEEeecCcc
Q psy8285 182 ALDTSVYTWNTKTNKTQ-L-L--VE---YPTYDNAYISCVAWKPRTTDLAVT-NTCTEYIDLWHEQEERLIQKLRTHMHQ 253 (507)
Q Consensus 182 ~~~~~i~iw~~~~~~~~-~-~--~~---~~~~~~~~v~~~~~~~~~~~l~~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~ 253 (507)
+.|+.+++|++...+.. . . .. ... +...+.+++|+|||++++++ ++.|++|+|||+.+++.+..+. |...
T Consensus 101 ~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~ 178 (365)
T 4h5i_A 101 KGNKHLRKFKYDKVNDQLEFLTSVDFDASTN-ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGE 178 (365)
T ss_dssp SCCCCEEEEEEETTTTEEEEEEEECSSCCCC-TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSC
T ss_pred cCCCcEEEEEecCCCceEEEeeeeceeecCC-cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCc
Confidence 35778999987654321 1 1 11 112 45668999999999998765 2578999999999999988876 7788
Q ss_pred EEEEEe--eCCEEEEEecCCeEEEEECCCCCcC-ceeeecCCCceEEEEEcCCCCEEEEEe-CC----cEEEEEcCCCCC
Q psy8285 254 VIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY-PTAITREGDVVCGLKWSPNGRYLASGS-NN----TVKIWDFRQLDA 325 (507)
Q Consensus 254 v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~----~i~i~d~~~~~~ 325 (507)
|.+++| +++++++++.+ .+.+|+..++... ......|...|.+++|+|+++++++++ ++ .+++|++.....
T Consensus 179 V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~ 257 (365)
T 4h5i_A 179 VKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT 257 (365)
T ss_dssp CCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE
T ss_pred eEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee
Confidence 999999 78999998855 5666666655432 234456888999999999999999988 54 578888876411
Q ss_pred -CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee-ecC-CCeEEEEECCCCCeEEEEeccC
Q psy8285 326 -KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV-KTD-SQVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 326 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~-~~i~~~~~s~~~~~l~~~~g~~ 402 (507)
......+.+|...|++++|+|+|+ ++++++. |++|+|||+++++++..+ ..| ..|++++|+|||++|++ ++.
T Consensus 258 ~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~--D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS--~S~ 332 (365)
T 4h5i_A 258 SVLRSKQVTNRFKGITSMDVDMKGE-LAVLASN--DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS--VSA 332 (365)
T ss_dssp EEEEEEEEESSCSCEEEEEECTTSC-EEEEEET--TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE--EET
T ss_pred cceeeeeecCCCCCeEeEEECCCCC-ceEEEcC--CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE--EeC
Confidence 112345677999999999999995 5566654 999999999999998875 455 78999999999999999 889
Q ss_pred CCeEEEEeCCC
Q psy8285 403 DCSLKMWEYPR 413 (507)
Q Consensus 403 d~~i~v~d~~~ 413 (507)
|++|+|||++.
T Consensus 333 D~tvrvw~ip~ 343 (365)
T 4h5i_A 333 ANTIHIIKLPL 343 (365)
T ss_dssp TSEEEEEECCT
T ss_pred CCeEEEEEcCC
Confidence 99999999964
No 94
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-33 Score=269.02 Aligned_cols=240 Identities=18% Similarity=0.308 Sum_probs=195.0
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC-CceeE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ-EERLI 244 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~-~~~~~ 244 (507)
|.+++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+ +..++++ +.||.|++||+. ....+
T Consensus 137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~-~~~~v~~~~~~--~~~l~~~-~~dg~i~i~d~~~~~~~~ 210 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA--G-HQARVGCLSWN--RHVLSSG-SRSGAIHHHDVRIANHQI 210 (401)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--C-CSSCEEEEEEE--TTEEEEE-ETTSEEEEEETTSSSCEE
T ss_pred EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--C-CCCceEEEEEC--CCEEEEE-cCCCCEEEEecccCccee
Confidence 4567777776 5666789999999999888665554 4 89999999994 5688888 999999999998 56778
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC-CEEEEEe---CCcEEEE
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG-RYLASGS---NNTVKIW 318 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~---d~~i~i~ 318 (507)
..+..|...|.+++| ++++|++++.|+.|++||+++.. ....+..|...|.+++|+|++ .++++++ |+.|++|
T Consensus 211 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 888899999999999 68899999999999999999865 556677899999999999976 5666664 6999999
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee--eecC-CCeEEEEECCCCCeE
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH--VKTD-SQVTSILWSEQYREL 395 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~--~~~~-~~i~~~~~s~~~~~l 395 (507)
|++++ +.+..+. +...+.+++|+|++..++++++ ..|+.|++||+.+++.... +..+ ..+.+++|+|++++|
T Consensus 290 d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g-~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (401)
T 4aez_A 290 NAATG---ARVNTVD-AGSQVTSLIWSPHSKEIMSTHG-FPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRIL 364 (401)
T ss_dssp ETTTC---CEEEEEE-CSSCEEEEEECSSSSEEEEEEC-TTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEE
T ss_pred ECCCC---CEEEEEe-CCCcEEEEEECCCCCeEEEEee-cCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEE
Confidence 99987 6666665 6788999999999976666542 3499999999998765554 4444 689999999999999
Q ss_pred EEEeccCCCeEEEEeCCCccEEEEee
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHLIEELK 421 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~~~~~~ 421 (507)
++ ++.||.|++||+.+++.+....
T Consensus 365 ~s--~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 365 ST--AASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EE--ECTTSEEEEEECCC--------
T ss_pred EE--EeCCCcEEEEECCCCccccccc
Confidence 99 7899999999999988776543
No 95
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.9e-33 Score=256.42 Aligned_cols=242 Identities=19% Similarity=0.331 Sum_probs=197.8
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC--CCeEEEEeCCCCcEEEEeCCC
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR--TTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~dg~i~iwd~~~ 240 (507)
...|.+++|+|++ +++++.|+.|++|++.+........+.+ |.++|.+++|+|+ +++|+++ +.|++|++||+.+
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~~l~s~-s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASC-SYDGKVMIWKEEN 86 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEE-ETTTEEEEEEBSS
T ss_pred cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCCEEEEE-cCCCEEEEEEcCC
Confidence 3458899999987 6677899999999997654344455666 9999999999864 7889998 9999999999988
Q ss_pred ce--eEEEEeecCccEEEEEe--e--CCEEEEEecCCeEEEEECCCCCc-CceeeecCCCceEEEEEcCC----------
Q psy8285 241 ER--LIQKLRTHMHQVIAMCW--N--GNLLSCGTIGGNILHYDVRTHSD-YPTAITREGDVVCGLKWSPN---------- 303 (507)
Q Consensus 241 ~~--~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~---------- 303 (507)
++ .+..+..|...|.+++| + +.+|++++.|+.|++||++.... ....+..|...|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---------
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCC
Confidence 74 56677889999999999 3 78999999999999999987632 24567889999999999997
Q ss_pred ---CCEEEEEe-CCcEEEEEcCCCCCC-CCeeeecCCCCCeeEEEEccCC--CcEEEEEccCCCCeEEEEeCCCCCe---
Q psy8285 304 ---GRYLASGS-NNTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWE--PTLLATGGGICDQTVRLWNSMNGKE--- 373 (507)
Q Consensus 304 ---~~~l~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~--- 373 (507)
+++|++++ |+.|++||++.+... .....+.+|...|.+++|+|++ ..++++++. |++|++||+++...
T Consensus 167 ~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~--D~~v~iWd~~~~~~~~~ 244 (297)
T 2pm7_B 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ--DRTCIIWTQDNEQGPWK 244 (297)
T ss_dssp ---CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET--TSCEEEEEESSTTSCCE
T ss_pred CCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC--CCcEEEEEeCCCCCccc
Confidence 57899998 799999999876211 1456778899999999999986 467777765 99999999977531
Q ss_pred eeee---ecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 374 KCHV---KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 374 ~~~~---~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
...+ .+...+.+++|+|++++|++ ++.|+.|++|+..
T Consensus 245 ~~~~~~~~~~~~v~~~~~s~~g~~las--~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 245 KTLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKEN 284 (297)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEE--EETTSCEEEEEEC
T ss_pred eeeeecccCCCcEEEEEECCCCCEEEE--EcCCCcEEEEEEC
Confidence 1222 22367999999999999999 7889999999976
No 96
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=278.66 Aligned_cols=245 Identities=12% Similarity=0.192 Sum_probs=204.7
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-----------eEEEEeecC------------ccEEEEEe--eC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-----------LIQKLRTHM------------HQVIAMCW--NG 261 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~--~~ 261 (507)
+.+.|++++|+|++++|+++ +.||.|+|||+.+++ ....+.+|. ..|.+++| ++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATG-DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEE-ETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCCCCEEEEE-cCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 57899999999999999999 999999999998876 577888998 88999999 44
Q ss_pred --CEEEEEecCCeEEEEECCCCCcC--------------------------------------c-eeeecCCCceEEEEE
Q psy8285 262 --NLLSCGTIGGNILHYDVRTHSDY--------------------------------------P-TAITREGDVVCGLKW 300 (507)
Q Consensus 262 --~~l~~~~~dg~i~i~d~~~~~~~--------------------------------------~-~~~~~~~~~v~~~~~ 300 (507)
..|++++.|+.|++||+.+.... . ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 68999999999999998753210 0 113579999999999
Q ss_pred cCCCCEEEEEeCCcEEEEEcCCCCCCCCee-------eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 301 SPNGRYLASGSNNTVKIWDFRQLDAKRPQV-------NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 301 ~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
+|++++|+++.|+.|++||++... ..+. .+.+|...|.+++|+|++..++++++. |+.|++||+++++.
T Consensus 186 ~~~~~~l~s~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 186 NSDYETYLSADDLRINLWHLEITD--RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS--KGTIRLCDMRASAL 261 (447)
T ss_dssp CTTSSEEEEECSSEEEEEETTEEE--EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET--TSCEEEEETTTCSS
T ss_pred cCCCCEEEEeCCCeEEEEECCCCC--ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC--CCeEEEEECcCCcc
Confidence 999999999977999999998431 2222 356799999999999998566666665 99999999999886
Q ss_pred ----eeeeecCC-------------CeEEEEECCCCCeEEEEeccCCCeEEEEeCCC-ccEEEEeeccccc---------
Q psy8285 374 ----KCHVKTDS-------------QVTSILWSEQYRELVTSHGKQDCSLKMWEYPR-LHLIEELKIHQER--------- 426 (507)
Q Consensus 374 ----~~~~~~~~-------------~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~~--------- 426 (507)
...+..+. .+.+++|+|++++|++ ++. +.|++||+++ ++++..+.+|...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT--RDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE--EES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE--eeC-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 66776663 8999999999999998 666 9999999997 8888888888642
Q ss_pred ------eeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 427 ------ILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 427 ------i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
+..++|+|++++|++++.||.|++||+.+++..
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999987764
No 97
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-33 Score=271.93 Aligned_cols=242 Identities=13% Similarity=0.224 Sum_probs=186.2
Q ss_pred eeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE---EE
Q psy8285 170 GLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI---QK 246 (507)
Q Consensus 170 ~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~---~~ 246 (507)
+++|.++.+++++.||.|++||+.+++...... + |...|.+++|++ ..++++ +.||.|++||+.+++.. ..
T Consensus 178 ~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~-h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~~~~~~~~ 251 (435)
T 1p22_A 178 CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI--H-HCEAVLHLRFNN--GMMVTC-SKDRSIAVWDMASPTDITLRRV 251 (435)
T ss_dssp EEECCSSEEEEEETTSCEEEEESSSCCEEEEEC--C-CCSCEEEEECCT--TEEEEE-ETTSCEEEEECSSSSCCEEEEE
T ss_pred EEEECCCEEEEEcCCCeEEEEECCCCcEEEEEc--C-CCCcEEEEEEcC--CEEEEe-eCCCcEEEEeCCCCCCceeeeE
Confidence 344433337788899999999999988765544 4 899999999974 588888 99999999999987655 66
Q ss_pred EeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q psy8285 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDA 325 (507)
Q Consensus 247 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~ 325 (507)
+.+|...|.+++|+++++++++.||.|++||+++++ ....+..|...|.++.|+ ++++++++ |+.|++||++++
T Consensus 252 ~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~-- 326 (435)
T 1p22_A 252 LVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-- 326 (435)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC--
T ss_pred ecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-EEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC--
Confidence 778999999999999999999999999999999876 567788899999999994 67899988 699999999988
Q ss_pred CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC---------eeeeeecC-CCeEEEEECCCCCeE
Q psy8285 326 KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK---------EKCHVKTD-SQVTSILWSEQYREL 395 (507)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---------~~~~~~~~-~~i~~~~~s~~~~~l 395 (507)
+.+..+.+|...|.+++| ++ .++++++. |+.|++||+.+++ ++..+..+ ..|.+++| ++++|
T Consensus 327 -~~~~~~~~h~~~v~~~~~--~~-~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l 398 (435)
T 1p22_A 327 -ACLRVLEGHEELVRCIRF--DN-KRIVSGAY--DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQI 398 (435)
T ss_dssp -CEEEEECCCSSCEEEEEC--CS-SEEEEEET--TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCE
T ss_pred -CEEEEEeCCcCcEEEEEe--cC-CEEEEEeC--CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEE
Confidence 888899999999999999 45 45555554 9999999997665 66677666 68999999 78889
Q ss_pred EEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEEC
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLS 433 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s 433 (507)
++ ++.||.|++||+.+........ ...+...+.|.
T Consensus 399 ~s--~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 399 VS--SSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp EE--CCSSSEEEEEC-----------------------
T ss_pred EE--EeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence 98 8899999999998876554433 23344555554
No 98
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-35 Score=281.38 Aligned_cols=232 Identities=14% Similarity=0.145 Sum_probs=182.3
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECC---CCceeEEEe--------cCC-CCCCceEEEE--EccCCCeEEEEeCCCC
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTK---TNKTQLLVE--------YPT-YDNAYISCVA--WKPRTTDLAVTNTCTE 231 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~---~~~~~~~~~--------~~~-~~~~~v~~~~--~~~~~~~l~~~~~~dg 231 (507)
|.+++|+|++ +++++.|+.|++||+. +++...... +.. .+...+.++. +++++.+|+++ +.||
T Consensus 114 v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~ 192 (437)
T 3gre_A 114 VTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL-TNLS 192 (437)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE-ETTS
T ss_pred EEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE-eCCC
Confidence 5567888865 6777899999999994 444333221 110 0345677777 56788899998 9999
Q ss_pred cEEEEeCCCceeEEEEee--cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeee-cCCCceEEEEEcC----
Q psy8285 232 YIDLWHEQEERLIQKLRT--HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAIT-REGDVVCGLKWSP---- 302 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~--~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~---- 302 (507)
.|++||+.+++.+..+.. |...|.+++| ++++|++++.||.|++||+++++ ....+. .|...|.+++|+|
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGK 271 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEEEECTTTCT
T ss_pred eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEEEeccccCC
Confidence 999999999999999988 8999999999 78999999999999999999865 444443 7788999996654
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecC--------------------------CCCCeeEEEEccCCCcEEEEE
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQC--------------------------HLSAVKAIAWCPWEPTLLATG 355 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~~~~~~ 355 (507)
++++|++++ |+.|++||++++ +.+..+.+ |...|++++|+ ++ .+++++
T Consensus 272 ~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~ 346 (437)
T 3gre_A 272 NSVIVVGGSSKTFLTIWNFVKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTD 346 (437)
T ss_dssp TEEEEEEESTTEEEEEEETTTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEE
T ss_pred CccEEEEEcCCCcEEEEEcCCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEec
Confidence 677999998 699999999876 33333332 66678899999 55 566666
Q ss_pred ccCCCCeEEEEeCCCCCeeeeeec--------------------------------------CCCeEEEEECCC--CCeE
Q psy8285 356 GGICDQTVRLWNSMNGKEKCHVKT--------------------------------------DSQVTSILWSEQ--YREL 395 (507)
Q Consensus 356 ~~~~d~~i~i~d~~~~~~~~~~~~--------------------------------------~~~i~~~~~s~~--~~~l 395 (507)
+. |+.|++||+.+++....+.. ...|.+++|+++ +.+|
T Consensus 347 ~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l 424 (437)
T 3gre_A 347 EA--TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLL 424 (437)
T ss_dssp GG--GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEE
T ss_pred CC--CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEE
Confidence 65 99999999999887766653 367999999998 6678
Q ss_pred EEEeccCCCeEEEEe
Q psy8285 396 VTSHGKQDCSLKMWE 410 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d 410 (507)
++ |+.||.|+||+
T Consensus 425 ~s--~~~dG~I~iw~ 437 (437)
T 3gre_A 425 VA--CDNSGLIGIFQ 437 (437)
T ss_dssp EE--EETTSCEEEEC
T ss_pred EE--EcCCceEEEeC
Confidence 87 88999999995
No 99
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=251.77 Aligned_cols=235 Identities=17% Similarity=0.308 Sum_probs=191.1
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-eeE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-RLI 244 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-~~~ 244 (507)
|.+++|+|++ +++++.|+.|++|++++++...... + |...+.++.+ ++..++++ +.++.+++|+.... ..+
T Consensus 70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~--~-h~~~~~~~~~--~~~~l~s~-~~~~~~~~~~~~~~~~~~ 143 (318)
T 4ggc_A 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--S-HSARVGSLSW--NSYILSSG-SRSGHIHHHDVRVAEHHV 143 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--C-CSSCEEEEEE--ETTEEEEE-ETTSEEEEEETTSSSCEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec--C-ccceEEEeec--CCCEEEEE-ecCCceEeeecCCCceeE
Confidence 4456777765 6777899999999999998766554 3 8888877655 46688888 99999999998875 456
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc---CceeeecCCCceEEEEEcCCCCEE-E--EEe-CCcE
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD---YPTAITREGDVVCGLKWSPNGRYL-A--SGS-NNTV 315 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l-~--~~~-d~~i 315 (507)
..+.+|...+..+.+ ++++|++++.|+.|++||+++++. .......+...|.++.++|++..+ . +++ ++.|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i 223 (318)
T 4ggc_A 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223 (318)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEE
T ss_pred EEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEE
Confidence 678889999999999 689999999999999999987652 234556778899999999976543 3 334 4999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCe
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRE 394 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~ 394 (507)
++||.+.. ... ....+...+..+.|+|++..+++++ +..|+.|++||+++++++..+.+| ..|++++|+|++++
T Consensus 224 ~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~~s-g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~ 298 (318)
T 4ggc_A 224 RIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELISGH-GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 298 (318)
T ss_dssp EEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEEEE-CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred EEEecccc---ccc-ccccceeeeeeeeecccccceEEEE-EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 99999875 333 3445778899999999997776654 235999999999999999999877 78999999999999
Q ss_pred EEEEeccCCCeEEEEeCCCcc
Q psy8285 395 LVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~~~~ 415 (507)
|++ ++.|+.|+|||+....
T Consensus 299 l~S--~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 299 VAS--AAADETLRLWRCFELD 317 (318)
T ss_dssp EEE--EETTTEEEEECCSCCC
T ss_pred EEE--EecCCeEEEEECCCCC
Confidence 999 8899999999997654
No 100
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.4e-32 Score=261.76 Aligned_cols=275 Identities=10% Similarity=0.041 Sum_probs=226.1
Q ss_pred eeeeCCCC-EEEEE-cCCeEEEEECCCCceeEEEe---cCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 170 GLDWGYHD-TLAVA-LDTSVYTWNTKTNKTQLLVE---YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 170 ~~~~s~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
+++|+|++ +++++ .++.|++||+.+++...... +.+ |...|.+++|+|++..++++ +.|+.|++||+.+++.+
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~s~-~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKK-KLGFVETISIPEHNELWVSQ-MQANAVHVFDLKTLAYK 204 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHT-TCCEEEEEEEGGGTEEEEEE-GGGTEEEEEETTTCCEE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccc-cCCceeEEEEcCCCEEEEEE-CCCCEEEEEECCCceEE
Confidence 57788866 44443 67789999999988765432 335 88899999999999888888 89999999999999999
Q ss_pred EEEeecCccEEEEEe--eCCEEE-EEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe---------C
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLS-CGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS---------N 312 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------d 312 (507)
..+..|...+.+++| +++.++ +++.++.|++||+++++ ....+. ....+.+++|+|+++++++++ |
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 205 ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL-EIRKTD-KIGLPRGLLLSKDGKELYIAQFSASNQESGG 282 (433)
T ss_dssp EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-EEEECC-CCSEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-EEEEec-CCCCceEEEEcCCCCEEEEEECCCCccccCC
Confidence 999889999999999 567664 55579999999998765 333333 345689999999999988877 4
Q ss_pred CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCC
Q psy8285 313 NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQY 392 (507)
Q Consensus 313 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (507)
+.|++||++++ +..... .+...+.+++|+|+++.+++++.. ++.|++||+.+++.+..+.....+.+++|+|++
T Consensus 283 g~i~~~d~~~~---~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~--~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg 356 (433)
T 3bws_A 283 GRLGIYSMDKE---KLIDTI-GPPGNKRHIVSGNTENKIYVSDMC--CSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDG 356 (433)
T ss_dssp EEEEEEETTTT---EEEEEE-EEEECEEEEEECSSTTEEEEEETT--TTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred CeEEEEECCCC---cEEeec-cCCCCcceEEECCCCCEEEEEecC--CCEEEEEECCCCcEEEEecCCCCCCeEEEcCCC
Confidence 68999999876 444443 466688999999999888888765 999999999999988888877889999999999
Q ss_pred CeEEEEeccC-------------CCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeC-CCcEEEEecCC
Q psy8285 393 RELVTSHGKQ-------------DCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-DETISIWNCFP 455 (507)
Q Consensus 393 ~~l~~~~g~~-------------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-dg~i~iw~~~~ 455 (507)
++++++.... ||.|++||+.+++.+..+.. ...+.+++|+|++++|++++. |+.|++|++..
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 9988842111 57999999999999888876 457899999999999988875 99999999863
No 101
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-33 Score=262.19 Aligned_cols=245 Identities=19% Similarity=0.352 Sum_probs=206.8
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC--CceeEEEEeecCccEEEEEee----CCEEEEEecCCeEEEEECCC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ--EERLIQKLRTHMHQVIAMCWN----GNLLSCGTIGGNILHYDVRT 280 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~ 280 (507)
|...|++++|+|++++|+++ +.||.|++||+. +++.+..+.+|...|.+++|. +++|++++.||.|++||+.+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATC-SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEE-ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CcccEEEEEEcCCCCEEEEE-ECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 99999999999999999999 899999999998 667778888999999999993 89999999999999999988
Q ss_pred CC-cCceeeecCCCceEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEcc----------
Q psy8285 281 HS-DYPTAITREGDVVCGLKWSPN--GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP---------- 346 (507)
Q Consensus 281 ~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~---------- 346 (507)
++ .....+..|...|.+++|+|+ ++++++++ |+.|++||++.... .....+..|...|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 167 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEEDGEHN 167 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-CCEEEEECCTTCEEEEEECCCC--------
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-eeeEEecCCCCceEEEEEcCcccccccccc
Confidence 64 135566778999999999999 99999999 69999999987632 33445667999999999999
Q ss_pred ---CCCcEEEEEccCCCCeEEEEeCCCCCe----eeeeecC-CCeEEEEECCC---CCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 347 ---WEPTLLATGGGICDQTVRLWNSMNGKE----KCHVKTD-SQVTSILWSEQ---YRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 347 ---~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~-~~i~~~~~s~~---~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
++. ++++++. |+.|++||+++++. ...+..+ ..|.+++|+|+ +++|++ ++.||.|++||+++++
T Consensus 168 ~~~~~~-~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s--~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 168 GTKESR-KFVTGGA--DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp --CTTC-EEEEEET--TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEEEEESSTT
T ss_pred CCCCCC-EEEEEeC--CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE--EeCCCEEEEEeCCCCC
Confidence 464 5555554 99999999987753 3444544 78999999999 888888 7899999999998864
Q ss_pred -----EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 416 -----LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 416 -----~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
.+.....|...|++++|+|++++|++++.||.|++|++.....
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 2222334888999999999999999999999999999986543
No 102
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-33 Score=259.99 Aligned_cols=242 Identities=19% Similarity=0.340 Sum_probs=197.6
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc--CCCeEEEEeCCCCcEEEEeCCC
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP--RTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
...|.+++|+|++ +++++.|+.|++||+.+++......+.+ |...|.+++|+| ++++|+++ +.|++|++||+.+
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~-s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILASC-SYDRKVIIWREEN 90 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEE-ETTSCEEEECCSS
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEE-ECCCEEEEEECCC
Confidence 4468899999987 6677899999999998876555666777 999999999986 47899998 9999999999988
Q ss_pred c--eeEEEEeecCccEEEEEe--e--CCEEEEEecCCeEEEEECCCCCc--CceeeecCCCceEEEEEcCC---------
Q psy8285 241 E--RLIQKLRTHMHQVIAMCW--N--GNLLSCGTIGGNILHYDVRTHSD--YPTAITREGDVVCGLKWSPN--------- 303 (507)
Q Consensus 241 ~--~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~--------- 303 (507)
+ +....+.+|...|.+++| + +.+|++++.|+.|++||++.... ....+..|...+.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 170 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDH 170 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccc
Confidence 7 356677889999999999 3 67999999999999999987532 13455678889999999997
Q ss_pred --------CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCC---CcEEEEEccCCCCeEEEEeCCCC
Q psy8285 304 --------GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWE---PTLLATGGGICDQTVRLWNSMNG 371 (507)
Q Consensus 304 --------~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~d~~i~i~d~~~~ 371 (507)
+++|++++ |+.|++||++..........+.+|...|.+++|+|++ ..++++++. |++|++||+.+.
T Consensus 171 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~--D~~v~iw~~~~~ 248 (316)
T 3bg1_A 171 PSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ--DGRVFIWTCDDA 248 (316)
T ss_dssp CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET--TCEEEEEECSST
T ss_pred ccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC--CCeEEEEEccCc
Confidence 46899988 7999999997542223566788899999999999986 256666665 999999998763
Q ss_pred C----eeeeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 372 K----EKCHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 372 ~----~~~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
. ....+.. ...+.+++|+|++++|++ ++.|+.|++|+..
T Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~las--~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 249 SSNTWSPKLLHKFNDVVWHVSWSITANILAV--SGGDNKVTLWKES 292 (316)
T ss_dssp TCCCCBCCEEEECSSCEEEEEECTTTCCEEE--EESSSCEEEEEEC
T ss_pred cccchhhhhhhcCCCcEEEEEEcCCCCEEEE--EcCCCeEEEEEEC
Confidence 1 1223333 478999999999999999 7899999999975
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-32 Score=262.47 Aligned_cols=279 Identities=11% Similarity=0.115 Sum_probs=225.3
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCc---eeEEEec---------------------------------------
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNK---TQLLVEY--------------------------------------- 203 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~---~~~~~~~--------------------------------------- 203 (507)
.+++++|++++ +++++.++.|++||+.+++ .......
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 36789999998 7888889999999999888 3332221
Q ss_pred -------------CCCCCCceEEEEEccCCCeE-EEEeCCCCcEEEEeCC--CceeEEEEe--ecCccEEEEEe--eCCE
Q psy8285 204 -------------PTYDNAYISCVAWKPRTTDL-AVTNTCTEYIDLWHEQ--EERLIQKLR--THMHQVIAMCW--NGNL 263 (507)
Q Consensus 204 -------------~~~~~~~v~~~~~~~~~~~l-~~~~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~--~~~~ 263 (507)
++ |...|.+++|+|++++| +++ +.||.|++||+. +++.+..+. .|...|.+++| ++++
T Consensus 86 ~~~~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPP-IYSYIRNLRLTSDESRLIACA-DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp --------------C-CCCCEEEEEECTTSSEEEEEE-GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccCccccCCCCCCCc-cCCceEEEEEcCCCCEEEEEE-CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 11 34479999999999997 566 899999999999 888888876 56789999999 6889
Q ss_pred EEEEecCCeEEEEECCCCCc---CceeeecCCCceEEEEEcCC---CCEEEEEe-CCcEEEEEcCCCCCCCCeee-ecCC
Q psy8285 264 LSCGTIGGNILHYDVRTHSD---YPTAITREGDVVCGLKWSPN---GRYLASGS-NNTVKIWDFRQLDAKRPQVN-NQCH 335 (507)
Q Consensus 264 l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~ 335 (507)
|++++.+|.|++|++.+... ....+.+|...|.+++|+|+ +++|++++ |+.|++||++++ ..+.. +.+|
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~h 240 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC---FIVDKWLFGH 240 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT---TCEEEECCCC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC---ceeeeeecCC
Confidence 99999999999999987652 22366789999999999999 99999999 699999999987 66666 5589
Q ss_pred CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec--------------------------CCCeEEEEEC
Q psy8285 336 LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT--------------------------DSQVTSILWS 389 (507)
Q Consensus 336 ~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--------------------------~~~i~~~~~s 389 (507)
...|.+++|+ ++.. +++++. |+.|++||+++++++..+.. ...+.+++|+
T Consensus 241 ~~~v~~~~~s-d~~~-l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 241 KHFVSSICCG-KDYL-LLSAGG--DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp SSCEEEEEEC-STTE-EEEEES--SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred CCceEEEEEC-CCCE-EEEEeC--CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 9999999999 7754 445544 99999999999998877752 1468999999
Q ss_pred CCCCeEEEEeccCCCeEEEEeC--CCc---cEEEEeeccccceeEEEECCCCCEEEEEeC------CCcEEEEecCCC
Q psy8285 390 EQYRELVTSHGKQDCSLKMWEY--PRL---HLIEELKIHQERILSAVLSPDQTCVAAASA------DETISIWNCFPR 456 (507)
Q Consensus 390 ~~~~~l~~~~g~~d~~i~v~d~--~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~ 456 (507)
|++++|+++ +..++.|++|++ .++ +.+..+..| ..|.+++|+|++.++++++. +..|.+|.+...
T Consensus 317 ~~~~~l~~~-~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 317 KNLPFVAFF-VEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSSSEEEEE-ETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCCCEEEEE-ECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 999999994 237999999999 555 677778877 88999999996433333332 556899988654
No 104
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=257.24 Aligned_cols=281 Identities=12% Similarity=0.154 Sum_probs=221.5
Q ss_pred ccceeeeeeCCC---C--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC
Q psy8285 165 DFYTSGLDWGYH---D--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ 239 (507)
Q Consensus 165 ~~~i~~~~~s~~---~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~ 239 (507)
...|++++|+|+ + +++++.|+.|++|++.+........+.+ |...|.+++|+|++++|+++ +.||.|++||+.
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~ 116 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTA-SCDKTAKMWDLS 116 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEETT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCCEEEEE-cCCCcEEEEEcC
Confidence 456899999998 4 6667789999999998733333233444 89999999999999999999 999999999999
Q ss_pred CceeEEEEeecCccEEEEEe----eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCc
Q psy8285 240 EERLIQKLRTHMHQVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNT 314 (507)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~ 314 (507)
+++.+. +..|...|.+++| ++++|++++.||.|++||+++.+ ....+..+ ..+.++.+.++ .+++++ ++.
T Consensus 117 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~ 191 (368)
T 3mmy_A 117 SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQLP-ERCYCADVIYP--MAVVATAERG 191 (368)
T ss_dssp TTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEEECS-SCEEEEEEETT--EEEEEEGGGC
T ss_pred CCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEEecC-CCceEEEecCC--eeEEEeCCCc
Confidence 988766 5669999999999 46789999999999999999876 45555544 45666776644 566666 699
Q ss_pred EEEEEcCCCCCCCCeee-ecCCCCCeeEEEEccCCCc---EEEEEccCCCCeEEEEeCCCC---CeeeeeecCC------
Q psy8285 315 VKIWDFRQLDAKRPQVN-NQCHLSAVKAIAWCPWEPT---LLATGGGICDQTVRLWNSMNG---KEKCHVKTDS------ 381 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~---~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~------ 381 (507)
+.+|+++... ..... ...+...+.++.+.++... .+++++. |+.|++||++.. +.+..+..+.
T Consensus 192 i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (368)
T 3mmy_A 192 LIVYQLENQP--SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI--EGRVAIHYINPPNPAKDNFTFKCHRSNGTNT 267 (368)
T ss_dssp EEEEECSSSC--EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET--TSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred EEEEEecccc--chhhhccccccCCCceEEEcccCCCCCCeEEEecC--CCcEEEEecCCCCccccceeeeeeecccccc
Confidence 9999998751 11111 1224455667776665533 2444443 999999999887 4455665553
Q ss_pred -------CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 382 -------QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 382 -------~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
.+.+++|+|++++|++ ++.||.|++||+.+++++..+.+|...|++++|+|++++|++++.|+..+.|++.
T Consensus 268 ~~~~~~~~v~~~~~sp~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 268 SAPQDIYAVNGIAFHPVHGTLAT--VGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CCCEEECCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred cccccccceEEEEEecCCCEEEE--EccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 6999999999999999 8899999999999999999999999999999999999999999999877777765
Q ss_pred CCCc
Q psy8285 455 PRDK 458 (507)
Q Consensus 455 ~~~~ 458 (507)
+.+.
T Consensus 346 ~~~~ 349 (368)
T 3mmy_A 346 NPQK 349 (368)
T ss_dssp CTTS
T ss_pred CCCc
Confidence 5443
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.3e-33 Score=266.33 Aligned_cols=245 Identities=20% Similarity=0.379 Sum_probs=211.3
Q ss_pred CCCceEEEEEccC-CCeEEEEeCCCCcEEEEeCCC----------ceeEEEEeecCccEEEEEe--eCC-EEEEEecCCe
Q psy8285 207 DNAYISCVAWKPR-TTDLAVTNTCTEYIDLWHEQE----------ERLIQKLRTHMHQVIAMCW--NGN-LLSCGTIGGN 272 (507)
Q Consensus 207 ~~~~v~~~~~~~~-~~~l~~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~ 272 (507)
|.+.|++++|+|+ +.+|+++ +.+|.|++||+.+ .+.+..+.+|...+.+++| ++. +|++++.||.
T Consensus 127 h~~~v~~l~~~p~~~~~lat~-~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATK-TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEE-CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred CCCcEEEEEECCCCCcEEEEE-CCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 8899999999998 5677777 9999999999986 5778888999999999999 455 9999999999
Q ss_pred EEEEECCCCCc------CceeeecCCCceEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEE
Q psy8285 273 ILHYDVRTHSD------YPTAITREGDVVCGLKWSP-NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAW 344 (507)
Q Consensus 273 i~i~d~~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 344 (507)
|++|++..... ....+..|...|.+++|+| ++.+|++++ |+.|++||++.......+..+..|...|++++|
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 285 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEe
Confidence 99999987432 1445668999999999999 678888888 699999999986444567777789999999999
Q ss_pred ccCCCcEEEEEccCCCCeEEEEeCCC-CCeeeeeecC-CCeEEEEECCCCCe-EEEEeccCCCeEEEEeCCC--------
Q psy8285 345 CPWEPTLLATGGGICDQTVRLWNSMN-GKEKCHVKTD-SQVTSILWSEQYRE-LVTSHGKQDCSLKMWEYPR-------- 413 (507)
Q Consensus 345 ~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~-~~i~~~~~s~~~~~-l~~~~g~~d~~i~v~d~~~-------- 413 (507)
+|++.+++++++. |+.|++||+++ .+++..+..+ ..+.+++|+|+++. |++ ++.|+.|++||+..
T Consensus 286 ~p~~~~~l~tg~~--dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 286 NPYSEFILATGSA--DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS--SGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp CSSCTTEEEEEET--TSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE--EETTSCCEEEEGGGTTCCCCHH
T ss_pred CCCCCCEEEEEeC--CCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE--EeCCCcEEEEeCCCCccccCcc
Confidence 9999888888775 99999999998 5667777755 78999999999976 555 77899999999986
Q ss_pred ------ccEEEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEEecCCC
Q psy8285 414 ------LHLIEELKIHQERILSAVLSPDQT-CVAAASADETISIWNCFPR 456 (507)
Q Consensus 414 ------~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~ 456 (507)
.+.+..+.+|...|++++|+|+++ +|++++.||.|++|++...
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 367778888999999999999999 8999999999999999754
No 106
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=263.14 Aligned_cols=232 Identities=14% Similarity=0.211 Sum_probs=183.2
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEE--ccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAW--KPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
|.+++|+|++ +++++.|+.|++||+.+++...... |...|.+++| +|++.+|+++ +.||.|++||+.+++.
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ----HDAPVKTIHWIKAPNYSCVMTG-SWDKTLKFWDTRSSNP 163 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEEEECSSCEEEEEE-ETTSEEEEECSSCSSC
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeecc----ccCceEEEEEEeCCCCCEEEEc-cCCCcEEEEECCCCcE
Confidence 4456777765 6677899999999999988766443 8899999999 8999999998 9999999999999998
Q ss_pred EEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceee-ecCCCceEEEEEcCCCCE----EEEEe-CCcEEE
Q psy8285 244 IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAI-TREGDVVCGLKWSPNGRY----LASGS-NNTVKI 317 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~----l~~~~-d~~i~i 317 (507)
+..+..+. .+.++.+....+++++.++.+.+|+++......... ..+...+.++.+.++... +++++ |+.|++
T Consensus 164 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 164 MMVLQLPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp SEEEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred EEEEecCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 88888664 678888888899999999999999998764322222 233455666776665543 88888 699999
Q ss_pred EEcCCCCCCCCeeeecCCCC------------CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeE
Q psy8285 318 WDFRQLDAKRPQVNNQCHLS------------AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVT 384 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~ 384 (507)
||++..........+..|.. .|.+++|+|++..+++.+. |+.|++||+.+++++..+..+ ..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~ 319 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS---DGRFSFWDKDARTKLKTSEQLDQPIS 319 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET---TSCEEEEETTTTEEEEECCCCSSCEE
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc---CCeEEEEECCCCcEEEEecCCCCCce
Confidence 99987632234555666665 7999999999966655544 999999999999999888876 7899
Q ss_pred EEEECCCCCeEEEEeccCCCeEEEEe
Q psy8285 385 SILWSEQYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 385 ~~~~s~~~~~l~~~~g~~d~~i~v~d 410 (507)
+++|+|++++|++ ++.|+..+.|+
T Consensus 320 ~~~~s~~g~~l~~--~s~d~~~~~~~ 343 (368)
T 3mmy_A 320 ACCFNHNGNIFAY--ASSYDWSKGHE 343 (368)
T ss_dssp EEEECTTSSCEEE--EECCCSTTCGG
T ss_pred EEEECCCCCeEEE--Eeccccccccc
Confidence 9999999999999 66666444444
No 107
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=4.6e-31 Score=251.05 Aligned_cols=277 Identities=13% Similarity=0.093 Sum_probs=215.1
Q ss_pred eeeeCCCC--EEEE-EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 170 GLDWGYHD--TLAV-ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 170 ~~~~s~~~--~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
+++|+|++ ++++ +.++.|++||+.+++....... ...+.+++|+|++++|++++..++.|++||+.+++.+..
T Consensus 36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~ 111 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA----GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT 111 (391)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC----CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE
Confidence 35566665 3233 3799999999999988776663 348999999999999877757789999999999998887
Q ss_pred EeecCccEEEEEe--eCCEE-EEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEE-EEe-CCcEEEEEcC
Q psy8285 247 LRTHMHQVIAMCW--NGNLL-SCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLA-SGS-NNTVKIWDFR 321 (507)
Q Consensus 247 ~~~~~~~v~~~~~--~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~ 321 (507)
+..+ ..+.+++| +++.+ ++++.++.|++||+.+++ ....+.. ...+.+++|+|+++.++ ++. ++.|++||++
T Consensus 112 ~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~ 188 (391)
T 1l0q_A 112 VKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (391)
T ss_dssp EECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 7754 46789999 57766 688889999999998875 3444444 35679999999999885 444 5999999998
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEecc
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~ 401 (507)
++ +....+. +...+.+++|+|+++.+++++....++.|++||+.+++.+..+..+..+.+++|+|++++++++ ++
T Consensus 189 ~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s-~~ 263 (391)
T 1l0q_A 189 TN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVA-LS 263 (391)
T ss_dssp TT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE-ET
T ss_pred CC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEE-cC
Confidence 86 5555554 5678999999999987777764112899999999999999888888889999999999988654 67
Q ss_pred CCCeEEEEeCCCccEEEEeecccccee---EEEECC------------CC----------CEEEEEeCCCcEEEEecCCC
Q psy8285 402 QDCSLKMWEYPRLHLIEELKIHQERIL---SAVLSP------------DQ----------TCVAAASADETISIWNCFPR 456 (507)
Q Consensus 402 ~d~~i~v~d~~~~~~~~~~~~~~~~i~---~~~~s~------------~~----------~~l~s~~~dg~i~iw~~~~~ 456 (507)
.|+.|++||+.+++.+..+..|..+.. .+.+.| +. ..+...+.|..+++|++.++
T Consensus 264 ~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g 343 (391)
T 1l0q_A 264 FXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDG 343 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSS
T ss_pred CCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCC
Confidence 899999999999999888876654421 122222 11 23555667889999999876
Q ss_pred Cc
Q psy8285 457 DK 458 (507)
Q Consensus 457 ~~ 458 (507)
..
T Consensus 344 ~~ 345 (391)
T 1l0q_A 344 SS 345 (391)
T ss_dssp CE
T ss_pred cc
Confidence 64
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.6e-32 Score=253.69 Aligned_cols=242 Identities=17% Similarity=0.184 Sum_probs=207.6
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce---eEEEEeecCccEEEEEe--eCC-EEEEEecCCeEEEEEC-C
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER---LIQKLRTHMHQVIAMCW--NGN-LLSCGTIGGNILHYDV-R 279 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~i~d~-~ 279 (507)
|.+.|++++|+|++++|+++ +.||.|++||+.+++ ....+..|...|.+++| +++ +|++++.||.|++||+ .
T Consensus 10 h~~~v~~~~~s~~~~~l~~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLIT-SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEE-ETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCcEEEEEEcCCCCEEEEE-cCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 89999999999999999999 899999999998876 34556689999999999 688 9999999999999999 7
Q ss_pred CCCcCceeeec--CCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC---------CCCCCCeeeecCCCCCeeEEEEccC
Q psy8285 280 THSDYPTAITR--EGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ---------LDAKRPQVNNQCHLSAVKAIAWCPW 347 (507)
Q Consensus 280 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~ 347 (507)
+.. ...+.. |...|.+++|+| ++++++++ |+.|++||++. . +++..+. |...+.+++|+|+
T Consensus 89 ~~~--~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 89 SPS--FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN---LNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp SSS--EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEE---SCSSSSS-SCCCEEEEEECSS
T ss_pred CCc--eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccC---CeeeEEe-eCCceEEEEecCC
Confidence 764 466777 999999999999 99999998 69999999987 5 5555555 8899999999997
Q ss_pred CCcEEEEEccCCCCeEEEEeCCC-CCee---eeeecCCCeEEEEECC-CCCeEEEEeccCCCeEEEEeCCCc------cE
Q psy8285 348 EPTLLATGGGICDQTVRLWNSMN-GKEK---CHVKTDSQVTSILWSE-QYRELVTSHGKQDCSLKMWEYPRL------HL 416 (507)
Q Consensus 348 ~~~~~~~~~~~~d~~i~i~d~~~-~~~~---~~~~~~~~i~~~~~s~-~~~~l~~~~g~~d~~i~v~d~~~~------~~ 416 (507)
+ +++ ++. |+.|++||+++ +... ........+.+++|+| +++++++ ++.||.|++|+++.. +.
T Consensus 162 ~--l~~-~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~--~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 162 R--LIV-GMN--NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC--SSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp E--EEE-EES--TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE--EETTSEEEEEECCTTCCSTTCTT
T ss_pred c--EEE-EeC--CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEE--EecCCcEEEEEEcCCCccccccc
Confidence 6 444 443 99999999988 5532 2222346899999999 9999999 788999999999887 77
Q ss_pred EEEeecccc---------ceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee
Q psy8285 417 IEELKIHQE---------RILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 417 ~~~~~~~~~---------~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
...+..|.. .|.+++|+|++++|++++.||.|++||+.+++....+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence 888888765 99999999999999999999999999999887766544
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.7e-32 Score=261.77 Aligned_cols=239 Identities=14% Similarity=0.251 Sum_probs=193.4
Q ss_pred eeeeeeCC-CC--EEEEEcCCeEEEEECCCCce-----eEEEecCCCCCCceEEEEEccCC-CeEEEEeCCCCcEEEEeC
Q psy8285 168 TSGLDWGY-HD--TLAVALDTSVYTWNTKTNKT-----QLLVEYPTYDNAYISCVAWKPRT-TDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 168 i~~~~~s~-~~--~~~~~~~~~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~dg~i~iwd~ 238 (507)
|.+++|+| ++ +++++.|+.|++|++.++.. .....+.+ |...|.+++|+|++ ..|+++ +.||.|++||+
T Consensus 84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd~ 161 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLLSA-GCDNVILVWDV 161 (402)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEE-ETTSCEEEEET
T ss_pred EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC-CCCeEEEEEECcCCCCEEEEE-cCCCEEEEEEC
Confidence 56788888 55 66677999999999988742 22334445 99999999999998 577777 99999999999
Q ss_pred CCceeEEEE--eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceee-ecCCCc-eEEEEEcCCCCEEEEE--
Q psy8285 239 QEERLIQKL--RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAI-TREGDV-VCGLKWSPNGRYLASG-- 310 (507)
Q Consensus 239 ~~~~~~~~~--~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~-- 310 (507)
.+++.+..+ ..|...|.+++| ++++|++++.|+.|++||+++++ ....+ ..|... +.++.|+|++++|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 240 (402)
T 2aq5_A 162 GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-VVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 (402)
T ss_dssp TTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-EEEEEECSSCSSSCCEEEECSTTEEEEEEEC
T ss_pred CCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-eeeeeccCCCCCcceEEEEcCCCcEEEEecc
Confidence 999999999 789999999999 68999999999999999999876 34444 567665 8999999999999998
Q ss_pred -e-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe-eeee---ecCCCeE
Q psy8285 311 -S-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE-KCHV---KTDSQVT 384 (507)
Q Consensus 311 -~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~---~~~~~i~ 384 (507)
+ |+.|++||++......... ...|...+.+++|+|++..++++++. |+.|++||+.++++ +..+ .+...+.
T Consensus 241 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~g~~--dg~i~i~d~~~~~~~~~~l~~~~~~~~v~ 317 (402)
T 2aq5_A 241 RMSERQVALWDTKHLEEPLSLQ-ELDTSSGVLLPFFDPDTNIVYLCGKG--DSSIRYFEITSEAPFLHYLSMFSSKESQR 317 (402)
T ss_dssp TTCCEEEEEEETTBCSSCSEEE-ECCCCSSCEEEEEETTTTEEEEEETT--CSCEEEEEECSSTTCEEEEEEECCSSCCS
T ss_pred CCCCceEEEEcCccccCCceEE-eccCCCceeEEEEcCCCCEEEEEEcC--CCeEEEEEecCCCcceEeecccccCCccc
Confidence 4 6999999999863211122 22477889999999999888777765 99999999998874 3333 3347899
Q ss_pred EEEECCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 385 SILWSEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 385 ~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
+++|+|++.++++ .++.+++|++.+++.
T Consensus 318 ~~~~sp~~~~~~s----~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 318 GMGYMPKRGLEVN----KCEIARFYKLHERKC 345 (402)
T ss_dssp EEEECCGGGSCGG----GTEEEEEEEEETTEE
T ss_pred ceEEeccccccee----cceeEEEEEcCCCcE
Confidence 9999999998765 356999999987543
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=4.5e-31 Score=246.87 Aligned_cols=279 Identities=14% Similarity=0.142 Sum_probs=216.0
Q ss_pred ccceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 165 DFYTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 165 ~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
...|.+++|+|++ +++++.+..+++|+..+++....... ..+..+++.++++.++++++.|+.|++||..+++.
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM-----RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC-----SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred CCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec-----CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 3458899999998 78888777899999987765544332 24788899999988876658889999999999999
Q ss_pred EEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEE--e-CCcEEEEEc
Q psy8285 244 IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASG--S-NNTVKIWDF 320 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~-d~~i~i~d~ 320 (507)
+..+. +...|.++.++.+.++++. ++.|++||+.+.......+.. ....+++++ .+++++ + +|.|++||+
T Consensus 94 ~~~~~-~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~ 166 (355)
T 3vu4_A 94 VSRIK-VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKL 166 (355)
T ss_dssp EEEEE-CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEEC
T ss_pred EEEEE-CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEEC
Confidence 88886 6779999999888777765 789999999987223333333 444566777 666664 4 599999999
Q ss_pred CCCCC------------CCC-eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCe-EEEEeCCCCCeeeeee---cCCCe
Q psy8285 321 RQLDA------------KRP-QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQT-VRLWNSMNGKEKCHVK---TDSQV 383 (507)
Q Consensus 321 ~~~~~------------~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~~~~~~~~---~~~~i 383 (507)
+++.. ..+ +..+.+|...|.+++|+|++. ++++++. |++ |++||+++++++..+. +...|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~--d~~~v~iwd~~~~~~~~~~~~g~h~~~v 243 (355)
T 3vu4_A 167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQ--DGTIIRVFKTEDGVLVREFRRGLDRADV 243 (355)
T ss_dssp CC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEET--TCSEEEEEETTTCCEEEEEECTTCCSCE
T ss_pred CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeC--CCCEEEEEECCCCcEEEEEEcCCCCCcE
Confidence 87520 012 677889999999999999985 5555554 998 9999999999999998 34789
Q ss_pred EEEEECCCCCeEEEEeccCCCeEEEEeCCCccE--EEEee---------------------ccccceeEEEECCCCCEEE
Q psy8285 384 TSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL--IEELK---------------------IHQERILSAVLSPDQTCVA 440 (507)
Q Consensus 384 ~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~--~~~~~---------------------~~~~~i~~~~~s~~~~~l~ 440 (507)
.+++|+|++++|++ ++.|+.|++||++.... ...+. .+......++|++++++|+
T Consensus 244 ~~~~~s~~~~~l~s--~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~ 321 (355)
T 3vu4_A 244 VDMKWSTDGSKLAV--VSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVV 321 (355)
T ss_dssp EEEEECTTSCEEEE--EETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEE
T ss_pred EEEEECCCCCEEEE--EECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEE
Confidence 99999999999999 88999999999976431 11111 1122346789999999999
Q ss_pred EEeCCCcEEEEecCCCCccc
Q psy8285 441 AASADETISIWNCFPRDKKR 460 (507)
Q Consensus 441 s~~~dg~i~iw~~~~~~~~~ 460 (507)
+++.||.+++|++.+.+...
T Consensus 322 ~~~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 322 VWPHTRMIETFKVVFDDEME 341 (355)
T ss_dssp EETTTTEEEEEEEEEETTTT
T ss_pred EEeCCCeEEEEEEEcCCCCc
Confidence 99999999999998765443
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.4e-30 Score=247.78 Aligned_cols=271 Identities=13% Similarity=0.138 Sum_probs=222.6
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAM 257 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 257 (507)
+++++.++.|++||+.+++...... +...+.+++|+|++++++++++.++.|++||+.+++.+..+..+. .+.++
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKVTATIP----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEee----cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 4555689999999999998776665 334689999999999886554799999999999999988887655 89999
Q ss_pred Ee--eCCEEEE-EecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEE-EEEe-CCcEEEEEcCCCCCCCCeeee
Q psy8285 258 CW--NGNLLSC-GTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYL-ASGS-NNTVKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 258 ~~--~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~-d~~i~i~d~~~~~~~~~~~~~ 332 (507)
+| +++.|++ +..++.|++||+.+++ ....+. +...+.+++|+|+++.+ ++++ ++.|++||++++ +.+..+
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK---AVINTV 154 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEE
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCe-EEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEE
Confidence 99 5777654 4567999999999875 333343 45578999999999987 5555 599999999887 566666
Q ss_pred cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEecc--CCCeEEEEe
Q psy8285 333 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGK--QDCSLKMWE 410 (507)
Q Consensus 333 ~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~--~d~~i~v~d 410 (507)
..+ ..+.+++|+|+++.+++++.. ++.|++||+++++....+..+..+.+++|+|++++++++ +. .++.|++||
T Consensus 155 ~~~-~~~~~~~~~~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~~~~v~~~d 230 (391)
T 1l0q_A 155 SVG-RSPKGIAVTPDGTKVYVANFD--SMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVT-NVDKYFNTVSMID 230 (391)
T ss_dssp ECC-SSEEEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEE-EECSSCCEEEEEE
T ss_pred ecC-CCcceEEECCCCCEEEEEeCC--CCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEE-ecCcCCCcEEEEE
Confidence 544 567999999999888777765 899999999999988888888889999999999999984 22 689999999
Q ss_pred CCCccEEEEeeccccceeEEEECCCCCEE-EEEeCCCcEEEEecCCCCccccee
Q psy8285 411 YPRLHLIEELKIHQERILSAVLSPDQTCV-AAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 411 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++....+.
T Consensus 231 ~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 231 TGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp TTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 99999988888765 47899999999987 667889999999999887665543
No 112
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-30 Score=247.21 Aligned_cols=246 Identities=20% Similarity=0.317 Sum_probs=202.8
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC--CCeEEEEeCCCCcEEEEeCCC
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR--TTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~dg~i~iwd~~~ 240 (507)
...|.+++|+|++ +++++.|+.|++|++..........+.+ |...|++++|+|+ +++|+++ +.||.|++||+.+
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASC-SYDGKVLIWKEEN 88 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEE-ETTSCEEEEEEET
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCCCCCCEEEEe-ccCCEEEEEEcCC
Confidence 3458899999988 5566689999999998666556666666 9999999999987 8999998 9999999999999
Q ss_pred ce--eEEEEeecCccEEEEEe--e--CCEEEEEecCCeEEEEECCCCCc-CceeeecCCCceEEEEEcC-----------
Q psy8285 241 ER--LIQKLRTHMHQVIAMCW--N--GNLLSCGTIGGNILHYDVRTHSD-YPTAITREGDVVCGLKWSP----------- 302 (507)
Q Consensus 241 ~~--~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~----------- 302 (507)
++ .+..+..|...|.+++| + +.+|++++.|+.|++||++.... ....+..|...|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 168 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 168 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---------
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccC
Confidence 87 67778889999999999 4 78999999999999999998742 3445678999999999999
Q ss_pred --CCCEEEEEe-CCcEEEEEcCCCCCC-CCeeeecCCCCCeeEEEEccCC--CcEEEEEccCCCCeEEEEeCCCCCe---
Q psy8285 303 --NGRYLASGS-NNTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWE--PTLLATGGGICDQTVRLWNSMNGKE--- 373 (507)
Q Consensus 303 --~~~~l~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~--- 373 (507)
+++++++++ |+.|++||++.+... .....+.+|...|.+++|+|++ ..++++++. |+.|++||+++++.
T Consensus 169 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~ 246 (379)
T 3jrp_A 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ--DRTCIIWTQDNEQGPWK 246 (379)
T ss_dssp -CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET--TSCEEEEEESSTTSCCE
T ss_pred CCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC--CCEEEEEeCCCCCccce
Confidence 689999999 699999999876221 2345677899999999999993 356666654 99999999988742
Q ss_pred eeeee---cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 374 KCHVK---TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 374 ~~~~~---~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
...+. +...+.+++|+|++++|++ ++.||.|++|++.....
T Consensus 247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 247 KTLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENLEGK 290 (379)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEE--EESSSSEEEEEEEETTE
T ss_pred eeeeccccCCCcEEEEEEcCCCCEEEE--ecCCCcEEEEeCCCCCc
Confidence 12222 3368999999999999999 77899999999975443
No 113
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-31 Score=245.18 Aligned_cols=224 Identities=10% Similarity=0.045 Sum_probs=168.5
Q ss_pred EEEEEcCCeEEEEE---------CCCCceeEEEecCCCCCCceEEEEEcc--CCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 178 TLAVALDTSVYTWN---------TKTNKTQLLVEYPTYDNAYISCVAWKP--RTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 178 ~~~~~~~~~i~iw~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
+++++.|+.|++|+ ..+++........ |...|.+++|+| ++++++++ +.||.|++||+.+++....
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~ 164 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD--SANEIIYMYGHNEVNTEYFIWA-DNRGTIGFQSYEDDSQYIV 164 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC--CSSCEEEEECCC---CCEEEEE-ETTCCEEEEESSSSCEEEE
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC--CCCCEEEEEcCCCCCCCEEEEE-eCCCcEEEEECCCCcEEEE
Confidence 55555666666665 4455544444432 778899999999 99999999 9999999999999988776
Q ss_pred Eee-cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeec-CCCceEEEEEcCCCCEEEEEeCCcEEEEEcCC
Q psy8285 247 LRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITR-EGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQ 322 (507)
Q Consensus 247 ~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~ 322 (507)
... +...+.+++| ++.+|++|+.||.|++||+++++.....+.. |...|.+++|+|++++|++++++.|++||+++
T Consensus 165 ~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~ 244 (343)
T 3lrv_A 165 HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRK 244 (343)
T ss_dssp ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTS
T ss_pred EecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCC
Confidence 644 5568999999 7899999999999999999998754366777 99999999999999999999988999999998
Q ss_pred CCCCCCeeeecCCCCCee--EEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECC---CCCeEEE
Q psy8285 323 LDAKRPQVNNQCHLSAVK--AIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSE---QYRELVT 397 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~ 397 (507)
......+..+..|...+. +++|+|+++++++.+++ |+.+++|++.+....... .++..+.|.| +.+.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~--d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE--SNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp STTCBSSCCCBC-----CCEEEEECTTSSEEEEEETT--TTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEEE
T ss_pred CCcceeecccccccccccceEEEECCCCCEEEEecCC--CCcEEEEEEcccccceEe---cCceeEecCccccccceeEE
Confidence 733333333333444444 69999999766665544 899999999766543333 4577888988 8888988
Q ss_pred EeccCCCeEEEEeC
Q psy8285 398 SHGKQDCSLKMWEY 411 (507)
Q Consensus 398 ~~g~~d~~i~v~d~ 411 (507)
++.|+.+.++-.
T Consensus 320 --~~~d~~~~~~~~ 331 (343)
T 3lrv_A 320 --VCGDGGIAAILK 331 (343)
T ss_dssp --EEETTEEEEEEE
T ss_pred --EecCCceEEEEe
Confidence 678888888753
No 114
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.9e-30 Score=241.21 Aligned_cols=249 Identities=16% Similarity=0.269 Sum_probs=201.6
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCce--eEEEecCCCCCCceEEEEEcc--CCCeEEEEeCCCCcEEEEeC
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT--QLLVEYPTYDNAYISCVAWKP--RTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~dg~i~iwd~ 238 (507)
...|.+++|+|++ +++++.|+.|++|++.++.. .....+.+ |...|.+++|+| ++++|+++ +.||.|++||+
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~-~~dg~v~vwd~ 88 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA-HDSSIVAIDWASPEYGRIIASA-SYDKTVKLWEE 88 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEE-ETTSCEEEEEE
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceecc-CCCcEEEEEEcCCCCCCEEEEE-cCCCeEEEEec
Confidence 3458999999987 66677999999999986532 23444555 999999999999 58899998 99999999999
Q ss_pred CCc---------eeEEEEeecCccEEEEEe--e--CCEEEEEecCCeEEEEECCCCCcCcee------------eecCCC
Q psy8285 239 QEE---------RLIQKLRTHMHQVIAMCW--N--GNLLSCGTIGGNILHYDVRTHSDYPTA------------ITREGD 293 (507)
Q Consensus 239 ~~~---------~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~~~~ 293 (507)
.++ +.+..+..|...|.+++| + +++|++++.||.|++||+++.+..... ...+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ 168 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSC
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccc
Confidence 887 567888899999999999 4 889999999999999999887632211 125778
Q ss_pred ceEEEEEcCC---CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCC---cEEEEEccCCCCeEEEE
Q psy8285 294 VVCGLKWSPN---GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP---TLLATGGGICDQTVRLW 366 (507)
Q Consensus 294 ~v~~~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~d~~i~i~ 366 (507)
.+.+++|+|+ +.++++++ ++.+.+|+...+ ....+..+.+|...|++++|+|++. .++++++. |+.|++|
T Consensus 169 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~--dg~i~iw 245 (351)
T 3f3f_A 169 SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG-KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK--DGRIRIF 245 (351)
T ss_dssp CCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS-CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET--TSCEEEE
T ss_pred ceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC-ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC--CCeEEEE
Confidence 8999999997 88999998 588877766654 1223677788999999999999973 56666664 9999999
Q ss_pred eCCCC----------------------------------------------CeeeeeecC-CCeEEEEECCCCCeEEEEe
Q psy8285 367 NSMNG----------------------------------------------KEKCHVKTD-SQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 367 d~~~~----------------------------------------------~~~~~~~~~-~~i~~~~~s~~~~~l~~~~ 399 (507)
|++.+ +.+..+..+ ..|++++|+|++++|++
T Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-- 323 (351)
T 3f3f_A 246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS-- 323 (351)
T ss_dssp EEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE--
T ss_pred eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE--
Confidence 99875 344555555 68999999999999999
Q ss_pred ccCCCeEEEEeCCCccEEEEe
Q psy8285 400 GKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 400 g~~d~~i~v~d~~~~~~~~~~ 420 (507)
++.||.|++||+.+++.+..+
T Consensus 324 ~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EETTSCEEEEEECTTSCEEEE
T ss_pred ecCCCcEEEEecCcCcchhhe
Confidence 889999999999987655544
No 115
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=7.8e-30 Score=250.49 Aligned_cols=281 Identities=11% Similarity=0.068 Sum_probs=218.7
Q ss_pred eeeCCCC--EEEEEcCCeEEEEEC--CCCceeEEEecCCCCCCceEEEEEcc----CCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 171 LDWGYHD--TLAVALDTSVYTWNT--KTNKTQLLVEYPTYDNAYISCVAWKP----RTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 171 ~~~s~~~--~~~~~~~~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
++++|++ +++++.++.|.+||+ .+++....+. +...+..++|+| +|+++++++..+++|.+||..+++
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~----~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK----IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 5556665 666778899999999 7777665554 445689999999 999999984468999999999999
Q ss_pred eEEEEeec----------C-ccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEE
Q psy8285 243 LIQKLRTH----------M-HQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLA 308 (507)
Q Consensus 243 ~~~~~~~~----------~-~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 308 (507)
++..+..+ . ..+..+.+ + +.++++...++.|.+||+.+.+........+...+.++.|+|++++++
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence 98887642 2 26788888 3 456777778899999999876533322334566788899999999887
Q ss_pred EEe--CCcEEEEEcCCCCCCCCeeeecC----CCCCeeEEEEccCCCcEEEEEc-cCCCCeEEEEeCCC-------CCee
Q psy8285 309 SGS--NNTVKIWDFRQLDAKRPQVNNQC----HLSAVKAIAWCPWEPTLLATGG-GICDQTVRLWNSMN-------GKEK 374 (507)
Q Consensus 309 ~~~--d~~i~i~d~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~-------~~~~ 374 (507)
+++ +++|.+||..++ +.+..+.. |.+....+ ++|++..+++++. + |++|.+||+.+ .+++
T Consensus 340 va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~--d~~V~v~d~~~~~~~~~~~~~v 413 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLG--DGSISLIGTDPKNHPQYAWKKV 413 (543)
T ss_dssp EEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEE
T ss_pred EEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCC--CceEEEEEeCCCCCchhcCeEE
Confidence 766 499999999987 55555543 54443333 5787667777764 3 89999999998 8889
Q ss_pred eeeecC-CCeEEEEECCCCCeEEEEecc-------CCCeEEEEeCCCccEE-EEe--------eccccceeEEEECCCCC
Q psy8285 375 CHVKTD-SQVTSILWSEQYRELVTSHGK-------QDCSLKMWEYPRLHLI-EEL--------KIHQERILSAVLSPDQT 437 (507)
Q Consensus 375 ~~~~~~-~~i~~~~~s~~~~~l~~~~g~-------~d~~i~v~d~~~~~~~-~~~--------~~~~~~i~~~~~s~~~~ 437 (507)
+.+..+ ..+..++++|++++|++ ++ .+++|.+||+.+++.. ..+ ..+...+..++|+|+|+
T Consensus 414 ~~l~~~g~~~~~v~~~pdg~~l~v--~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~ 491 (543)
T 1nir_A 414 AELQGQGGGSLFIKTHPKSSHLYV--DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD 491 (543)
T ss_dssp EEEECSCSCCCCEECCTTCCEEEE--CCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSS
T ss_pred EEEEcCCCCceEEEcCCCCCcEEE--ecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCC
Confidence 999877 56788999999999999 44 2679999999998876 443 34567899999999999
Q ss_pred EEEEEe-----CCCcEEEEecCCCCccccee
Q psy8285 438 CVAAAS-----ADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 438 ~l~s~~-----~dg~i~iw~~~~~~~~~~~~ 463 (507)
.++++. .|+.|.|||..+.+.+..++
T Consensus 492 ~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 492 EVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 988663 47999999999998877655
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-31 Score=273.88 Aligned_cols=247 Identities=18% Similarity=0.341 Sum_probs=207.8
Q ss_pred cCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC--CceeEEEEeecCccEEEEEe--e--CCEEEEEecCCeEEEE
Q psy8285 203 YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ--EERLIQKLRTHMHQVIAMCW--N--GNLLSCGTIGGNILHY 276 (507)
Q Consensus 203 ~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i~ 276 (507)
+.+ |.+.|++++|+|++++|+++ +.||.|++||+. +++.+..+.+|..+|.+++| + +++|++++.||.|++|
T Consensus 5 l~g-H~~~V~~l~~s~dg~~latg-~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 5 ANA-HNELIHDAVLDYYGKRLATC-SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEE-ETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred ccc-CcceeEEEEECCCCCeEEEE-ECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 345 99999999999999999999 899999999998 56778888999999999999 3 8899999999999999
Q ss_pred ECCCCC-cCceeeecCCCceEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC-----
Q psy8285 277 DVRTHS-DYPTAITREGDVVCGLKWSPN--GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW----- 347 (507)
Q Consensus 277 d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 347 (507)
|+.++. .....+..|...|.+++|+|+ ++++++++ |+.|++||++.... .....+.+|...|.+++|+|.
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-CCCEEEECCSSCEEEEEECCCC----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-cceeEeecCCCceEEEEecCcccccc
Confidence 998764 135566789999999999999 99999999 69999999987633 234456679999999999994
Q ss_pred --------CCcEEEEEccCCCCeEEEEeCCCCC----eeeeeecC-CCeEEEEECCC---CCeEEEEeccCCCeEEEEeC
Q psy8285 348 --------EPTLLATGGGICDQTVRLWNSMNGK----EKCHVKTD-SQVTSILWSEQ---YRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 348 --------~~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~-~~i~~~~~s~~---~~~l~~~~g~~d~~i~v~d~ 411 (507)
+..++ +++. |+.|++||++++. ....+..+ ..|.+++|+|+ ++++++ ++.||.|++||+
T Consensus 162 ~~~~~~~d~~~l~-sgs~--dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s--~s~Dg~I~iwd~ 236 (753)
T 3jro_A 162 GEHNGTKESRKFV-TGGA--DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQ 236 (753)
T ss_dssp -----CGGGCCEE-EEET--TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EESSSCEEEEEE
T ss_pred cccccCCCCCEEE-EEEC--CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE--EecCCEEEEecC
Confidence 54444 4444 9999999998874 44455555 78999999999 888988 789999999999
Q ss_pred CCcc-----EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 412 PRLH-----LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 412 ~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
.+++ .+.....|...|++++|+|++++|++++.||.|++|++.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 8864 333445688899999999999999999999999999998644
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-32 Score=255.11 Aligned_cols=255 Identities=11% Similarity=0.092 Sum_probs=200.3
Q ss_pred ceeeeeeCCCC-E-EEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD-T-LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~-~-~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.|.+++||||| + ++++.|++|+ |...++.. .+ |...|.+++|+|+| .++.+.+|+.+... .
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l-----~g-h~~~v~~V~FsPdg--------~~~~~~~~~~~~~~-~ 79 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI-----NC-NSKNLFHVKEFPLE--------FENKLDFELAQQNG-L 79 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE--EECCCSCC-----SS-BGGGTEEEEEECCC--------CCCTTTTSCCCSSC-S
T ss_pred cEEEEEECCCCCEEEEEcCCceee--ccccccee-----cC-CCccEEEEEECCCC--------CcceEEEEeCCCce-E
Confidence 47789999999 4 4456888998 75555422 45 99999999999998 46666666543222 2
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCC-----ceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD-----VVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
..+ .|...|.+++| +|+.||+++.||.|++||... ....+. |.. .+.+++|||||++|++|+ ||+|+
T Consensus 80 ~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 80 LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 122 45788999999 799999999999999999543 344444 554 599999999999999999 69999
Q ss_pred EEEcCCCCCCC----Ceeee----cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee---eeee-cC-CCe
Q psy8285 317 IWDFRQLDAKR----PQVNN----QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK---CHVK-TD-SQV 383 (507)
Q Consensus 317 i~d~~~~~~~~----~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~-~~-~~i 383 (507)
+||+..+.... .+.++ .+|...|.+++|+|+| +++++. |++|++||+.+++.. ..+. .+ ..|
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~---D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS---NNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET---TCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC---CCeEEEEECCCCccccceeeecccccCcE
Confidence 99998862211 24554 6678899999999998 555554 999999999887742 4553 44 689
Q ss_pred EEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEE--CCCCCEEEEEeCCCcEEEEecC
Q psy8285 384 TSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVL--SPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 384 ~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
.+++|+ |+.|++ ++ ++.|++||+.+++......+|...|..++| +|++..|++++.||+ ++|...
T Consensus 230 ~svaFs--g~~LAS--a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 230 TDLKIV--DYKVVL--TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCEEEE--TTEEEE--EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEEE--CCEEEE--Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 999999 688888 44 699999999987774444489999999999 999999999999999 999985
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.3e-30 Score=239.10 Aligned_cols=251 Identities=10% Similarity=0.104 Sum_probs=182.3
Q ss_pred EEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEE-EEE
Q psy8285 189 TWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLL-SCG 267 (507)
Q Consensus 189 iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l-~~~ 267 (507)
+|++.+.+... ...+ |...|.+++|+|++++|+++ +.+ .+++||+.+++.......+...+..+.++++.+ +++
T Consensus 3 i~s~~~~~~~~--~~~~-h~~~V~~v~fs~dg~~la~g-~~~-~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 3 LGSMITRNPIV--PENH-VSNPVTDYEFNQDQSCLILS-TLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp -------------------CCCCCEEEECTTSSEEEEE-CSS-EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEEC
T ss_pred cccccccCCcc--cccc-CCCceEEEEECCCCCEEEEE-cCC-EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEE
Confidence 34444444332 2344 89999999999999999988 655 478999998776655443333334444466666 567
Q ss_pred ecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC
Q psy8285 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW 347 (507)
Q Consensus 268 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 347 (507)
+.|+.|++||+.+++ ....+. +...|.+++|+++ .++++.++.|++||+.+. .+.+..+.. +...+++++
T Consensus 78 ~~d~~v~iWd~~~~~-~~~~~~-~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~--~~~~~~~~~---~~~~~~~s~- 147 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQ-DVSRIK-VDAPVKDLFLSRE--FIVVSYGDVISVFKFGNP--WKRITDDIR---FGGVCEFSN- 147 (355)
T ss_dssp SSTTEEEEEETTTTE-EEEEEE-CSSCEEEEEECSS--EEEEEETTEEEEEESSTT--CCBSSCCEE---EEEEEEEET-
T ss_pred CCccEEEEEECCCCc-EEEEEE-CCCceEEEEEcCC--EEEEEEcCEEEEEECCCC--ceeeEEecc---CCceEEEEc-
Confidence 788999999999876 334443 6778999999876 466667899999999875 123333332 445566777
Q ss_pred CCcEEEEEccCCCCeEEEEeCCCCC----------------eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCe-EEEE
Q psy8285 348 EPTLLATGGGICDQTVRLWNSMNGK----------------EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCS-LKMW 409 (507)
Q Consensus 348 ~~~~~~~~~~~~d~~i~i~d~~~~~----------------~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~-i~v~ 409 (507)
..++++ ++..||.|++||+.+++ .+..+..| ..|.+++|+|++++|++ ++.|+. |++|
T Consensus 148 -~~la~~-sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s--~s~d~~~v~iw 223 (355)
T 3vu4_A 148 -GLLVYS-NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT--CSQDGTIIRVF 223 (355)
T ss_dssp -TEEEEE-ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE--EETTCSEEEEE
T ss_pred -cEEEEe-CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE--EeCCCCEEEEE
Confidence 344443 22359999999999865 15666666 78999999999999999 889998 9999
Q ss_pred eCCCccEEEEee-c-cccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 410 EYPRLHLIEELK-I-HQERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 410 d~~~~~~~~~~~-~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
|+++++++..+. + |...|++++|+|++++|++++.|++|++||+.....
T Consensus 224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 224 KTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp ETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred ECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 999999999998 5 999999999999999999999999999999987643
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.2e-31 Score=251.50 Aligned_cols=245 Identities=12% Similarity=0.055 Sum_probs=176.0
Q ss_pred EEEEEcCCeEEEEECCCCceeE---EEecCCCCCCceEEEEEcc--------CCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQL---LVEYPTYDNAYISCVAWKP--------RTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~---~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
+++++.|++|++||..+++... ...+.| |.+.|.+++|+| ++++|+++ +.|++|+|||+.++..+..
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~g-H~~~v~~v~~~p~~~~~~~~d~~~las~-s~D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSG-HHNFVNDIDIADVYSADNRLAEQVIASV-GDDCTLIIWRLTDEGPILA 181 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTS-CSSCEEEEEEEEEECTTCSEEEEEEEEE-ETTSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCC-CCCceEEEEEccccccccCCCCCEEEEE-ECCCeEEEEECCCCceeee
Confidence 5567799999999999887543 234667 999999999998 78899998 9999999999999888888
Q ss_pred EeecCccEEEEEee---CCEEEEEecCCeEEEEECCCCCcCce------------------------eeecCCCceEEEE
Q psy8285 247 LRTHMHQVIAMCWN---GNLLSCGTIGGNILHYDVRTHSDYPT------------------------AITREGDVVCGLK 299 (507)
Q Consensus 247 ~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~------------------------~~~~~~~~v~~~~ 299 (507)
+..|...+.+++|. +.+|++++.|++|++||+++++.... ...+|...+.++.
T Consensus 182 ~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~ 261 (393)
T 4gq1_A 182 GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR 261 (393)
T ss_dssp EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE
T ss_pred ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee
Confidence 88999999999993 45899999999999999987642111 1235677788899
Q ss_pred Ec-CCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee
Q psy8285 300 WS-PNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV 377 (507)
Q Consensus 300 ~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 377 (507)
|+ |+++.+++++ |+++++||+..+ +....+..|...+..+.+.|+.... ..
T Consensus 262 ~~~~dg~~l~s~s~d~~i~vwd~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~-~~----------------------- 314 (393)
T 4gq1_A 262 WIGSDGSGILAMCKSGAWLRWNLFAN---NDYNEISDSTMKLGPKNLLPNVQGI-SL----------------------- 314 (393)
T ss_dssp EETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEE-CS-----------------------
T ss_pred eecCCCCEEEEEeCCCCEEEEECccC---CCCceEeeecCccccEEEccccccc-cc-----------------------
Confidence 87 7999999999 699999999887 5556666677777777766654211 10
Q ss_pred ecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 378 KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 378 ~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
....+..+.+.+.+..++++ |+.||.|++||+.+++++..+..|..+|++++|+|||++||+++.+| +.+|.+.
T Consensus 315 -~~~~~~~~~~~~~~~~~~~s-gs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 315 -FPSLLGACPHPRYMDYFATA-HSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp -SCCSSCCEECSSCTTEEEEE-ETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred -cCcceeEEEccCCCCEEEEE-ECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 00112222233344444443 88999999999999999888888999999999999999999999776 6667654
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.4e-30 Score=248.66 Aligned_cols=258 Identities=12% Similarity=0.047 Sum_probs=206.3
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce---eEEEEee------------------------------------
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER---LIQKLRT------------------------------------ 249 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~---~~~~~~~------------------------------------ 249 (507)
.++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~--~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI--IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSSEEEEE--ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE--eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 468899999999966655 68899999999888 5555543
Q ss_pred ------------------cCccEEEEEe--eCCEE-EEEecCCeEEEEECC--CCCcCceeee--cCCCceEEEEEcCCC
Q psy8285 250 ------------------HMHQVIAMCW--NGNLL-SCGTIGGNILHYDVR--THSDYPTAIT--REGDVVCGLKWSPNG 304 (507)
Q Consensus 250 ------------------~~~~v~~~~~--~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~~--~~~~~v~~~~~~~~~ 304 (507)
|...|.+++| ++++| ++++.||.|++||+. ++. ....+. .+...|++++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-VLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-CEEEEEEEECSSCEEEEEECTTS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-eeeeeecccCCCCceEEEEcCCC
Confidence 2236999999 67885 889999999999998 554 444444 677899999999999
Q ss_pred CEEEEEe-CCcEEEEEcCCCCCCC-CeeeecCCCCCeeEEEEccC---CCcEEEEEccCCCCeEEEEeCCCCCeeeeee-
Q psy8285 305 RYLASGS-NNTVKIWDFRQLDAKR-PQVNNQCHLSAVKAIAWCPW---EPTLLATGGGICDQTVRLWNSMNGKEKCHVK- 378 (507)
Q Consensus 305 ~~l~~~~-d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~- 378 (507)
++|++++ ++.|++|++..+.... ....+.+|...|.+++|+|+ + .++++++. |+.|++||+++++.+..+.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~--d~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDR--DEHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEET--TSCEEEEEESCTTCEEEECC
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcC--CCcEEEEECCCCceeeeeec
Confidence 9999999 5999999998874333 44467789999999999999 6 45555554 9999999999998887633
Q ss_pred cC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc-------------------------ccceeEEEE
Q psy8285 379 TD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-------------------------QERILSAVL 432 (507)
Q Consensus 379 ~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-------------------------~~~i~~~~~ 432 (507)
.+ ..|.+++|+ ++++|++ ++.|+.|++||+.+++++..+..+ ...|.+++|
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s--~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLS--AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEE--EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred CCCCceEEEEEC-CCCEEEE--EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 44 789999999 9999999 789999999999999988887632 346899999
Q ss_pred CCCCCEEEEEe-CCCcEEEEec--CCC---CcccceeecCCCcceEEee
Q psy8285 433 SPDQTCVAAAS-ADETISIWNC--FPR---DKKRKARQVGSGSSLEFAI 475 (507)
Q Consensus 433 s~~~~~l~s~~-~dg~i~iw~~--~~~---~~~~~~~~~~~~~~~~~~~ 475 (507)
+|++++|++++ .|+.|++|++ .+. +....+.....+.++.|.+
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~ 364 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHN 364 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEET
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecC
Confidence 99999999998 8999999999 444 3333333334555666665
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.9e-30 Score=241.92 Aligned_cols=255 Identities=11% Similarity=0.054 Sum_probs=199.7
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC---------CceeEEEEe
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ---------EERLIQKLR 248 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~---------~~~~~~~~~ 248 (507)
+++++.|+.|++||+.+++....+. ...|.++.|+|+ ++++ +.|+.|++|+.. +++.+..+.
T Consensus 51 l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~-s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 51 CMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISR-GPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEE-CSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEe-cCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 7778899999999999988765554 245778888887 7777 999999999765 444444444
Q ss_pred -ecCccEEEEEe----eCCEEEEEecCCeEEEEECCCCCcCceee-ecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q psy8285 249 -THMHQVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDYPTAI-TREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR 321 (507)
Q Consensus 249 -~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~ 321 (507)
.|..+|.+++| +++++++++.||.|++||+++++. .... ..+...+.+++|+|++++|++|+ |+.|++||++
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 57788999999 468999999999999999998763 3333 34566799999999999999988 6999999999
Q ss_pred CCCCCCCe-eeecC-CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec---C-CCe--EEEEECCCCC
Q psy8285 322 QLDAKRPQ-VNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT---D-SQV--TSILWSEQYR 393 (507)
Q Consensus 322 ~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~-~~i--~~~~~s~~~~ 393 (507)
++ +.. ..+.. |..+|++++|+|++. ++++++ ++.|++||+++++....+.. + ..+ .+++|+|+++
T Consensus 201 ~~---~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 201 SP---DQASSRFPVDEEAKIKEVKFADNGY-WMVVEC---DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp CT---TSCCEECCCCTTSCEEEEEECTTSS-EEEEEE---SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred CC---CCCccEEeccCCCCEEEEEEeCCCC-EEEEEe---CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence 87 555 66776 999999999999985 555555 55999999999887665543 1 222 4699999999
Q ss_pred eEEEEeccC-CCeEEEEeCCCccEEEEeeccccceeEEEECC---CCCEEEEEeCCCcEEEEecCC
Q psy8285 394 ELVTSHGKQ-DCSLKMWEYPRLHLIEELKIHQERILSAVLSP---DQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 394 ~l~~~~g~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~s~~~dg~i~iw~~~~ 455 (507)
+|++ ++. |+.|++|++.+....... .++..+.|++ +.+.+++++.||.+.++-...
T Consensus 274 ~l~~--~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 274 NMIA--YSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEE--EETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEEE--ecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 9999 555 999999999766543333 5678889998 888999999999999886543
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=5.9e-29 Score=221.40 Aligned_cols=275 Identities=9% Similarity=0.036 Sum_probs=192.6
Q ss_pred eeeeeeCCCC----EEEEEcCCeEEEEECCCC-ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC---CcEEEEeCC
Q psy8285 168 TSGLDWGYHD----TLAVALDTSVYTWNTKTN-KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT---EYIDLWHEQ 239 (507)
Q Consensus 168 i~~~~~s~~~----~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d---g~i~iwd~~ 239 (507)
+.++-|-..+ .+..+....|++|+..++ +..+..+..+ |..+|..+.+.|+...|+..+-.+ +.|+..-+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHF-AEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEEC-CSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEec-cCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 5667775543 455567889999999987 2344555555 888999999999765555431111 112222111
Q ss_pred Cc----eeEEEEeecCccEEEEEeeCCEEEEEe--cCCeEEEEECCCCCcCceeeecCCCceEEEEEcC---CCCEEEEE
Q psy8285 240 EE----RLIQKLRTHMHQVIAMCWNGNLLSCGT--IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP---NGRYLASG 310 (507)
Q Consensus 240 ~~----~~~~~~~~~~~~v~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~ 310 (507)
.. .......+|...+..+ -+++++.+++ .|+.|++|++.........+..|...++.++|+| ++.+|+++
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg 199 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT 199 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred CCccccccEEEeCCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence 11 1222223444445443 1444454433 5999999999654445667778999999999999 78999999
Q ss_pred e-CCcEEEEEcCCCCCCCCeeeecCCC---CCeeEEEEccCCCcEE-----------EEEccCCCCeEEEEeCCCCCeee
Q psy8285 311 S-NNTVKIWDFRQLDAKRPQVNNQCHL---SAVKAIAWCPWEPTLL-----------ATGGGICDQTVRLWNSMNGKEKC 375 (507)
Q Consensus 311 ~-d~~i~i~d~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~-----------~~~~~~~d~~i~i~d~~~~~~~~ 375 (507)
+ |++|+|||++++ +.+.++.+|. ..+.+++|+|++..++ +++ +.|++|++||..+++.+.
T Consensus 200 S~D~TIkIWDl~TG---k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG--s~D~tIklWd~~tgk~l~ 274 (356)
T 2w18_A 200 TIMNNIVIWNLKTG---QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR--SPVFQLIVINPKTTLSVG 274 (356)
T ss_dssp ETTSEEEEEETTTC---CEEEEEECCC---CCCEEEEEEETTEEEEEEC--------------CCEEEEEEETTTTEEEE
T ss_pred cCCCcEEEEECCCC---cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc--CCCcEEEEEECCCCEEEE
Confidence 9 799999999998 7888887654 3677889999986543 333 459999999999998876
Q ss_pred eee-----cC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccccee-EEEECCCCCEEEEEeCCCcE
Q psy8285 376 HVK-----TD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERIL-SAVLSPDQTCVAAASADETI 448 (507)
Q Consensus 376 ~~~-----~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~s~~~dg~i 448 (507)
.+. ++ ..+.+..++ +..+++ ++.|++|+|||+.+++.+.++.+|...+. .++|+|||++|++|+.|++|
T Consensus 275 v~~~~~p~Gh~~~~lsg~~s--g~~lAS--gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 275 VMLYCLPPGQAGRFLEGDVK--DHCAAA--ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp EEEECCCTTCCCCEEEEEEE--TTEEEE--EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred EEEeeccCCCcceeEccccC--CCEEEE--EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 552 22 234333333 667777 88999999999999999999999987655 58999999999999999999
Q ss_pred EEEec
Q psy8285 449 SIWNC 453 (507)
Q Consensus 449 ~iw~~ 453 (507)
+|||+
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99996
No 123
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.3e-29 Score=243.65 Aligned_cols=242 Identities=17% Similarity=0.308 Sum_probs=198.2
Q ss_pred ccceeeeeeCCC-C--EEEEEcCCeEEEEECCC--------CceeEEEecCCCCCCceEEEEEccCCC-eEEEEeCCCCc
Q psy8285 165 DFYTSGLDWGYH-D--TLAVALDTSVYTWNTKT--------NKTQLLVEYPTYDNAYISCVAWKPRTT-DLAVTNTCTEY 232 (507)
Q Consensus 165 ~~~i~~~~~s~~-~--~~~~~~~~~i~iw~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~dg~ 232 (507)
...|++++|+|+ + +++++.+|.|++|++.. +.......+.+ |...|.+++|+|++. +|+++ +.||.
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~-~~dg~ 205 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSA-SDDHT 205 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEE-CTTSC
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEE-eCCCe
Confidence 345888999997 3 44456899999999976 22333444455 899999999999998 88888 99999
Q ss_pred EEEEeCCCcee-------EEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCC--cCceeeecCCCceEEEEE
Q psy8285 233 IDLWHEQEERL-------IQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHS--DYPTAITREGDVVCGLKW 300 (507)
Q Consensus 233 i~iwd~~~~~~-------~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~ 300 (507)
|++||+.++.. ...+..|...|.+++| ++.+|++++.||.|++||+++.. .....+..|...|++++|
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 285 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEe
Confidence 99999987322 4566789999999999 47899999999999999999863 356677789999999999
Q ss_pred cCCCC-EEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC--------
Q psy8285 301 SPNGR-YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-------- 370 (507)
Q Consensus 301 ~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------- 370 (507)
+|+++ ++++++ |+.|++||++.. ..++..+..|...|.+++|+|+++.++++++. |+.|++||+..
T Consensus 286 ~p~~~~~l~tg~~dg~v~vwd~~~~--~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 286 NPYSEFILATGSADKTVALWDLRNL--KLKLHSFESHKDEIFQVQWSPHNETILASSGT--DRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCT--TSCSEEEECCSSCEEEEEECSSCTTEEEEEET--TSCCEEEEGGGTTCCCCHH
T ss_pred CCCCCCEEEEEeCCCeEEEEeCCCC--CCCeEEeecCCCCEEEEEECCCCCCEEEEEeC--CCcEEEEeCCCCccccCcc
Confidence 99987 688888 699999999974 15677888899999999999999888888775 99999999987
Q ss_pred ------CCeeeeeecC-CCeEEEEECCCCC-eEEEEeccCCCeEEEEeCCCc
Q psy8285 371 ------GKEKCHVKTD-SQVTSILWSEQYR-ELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 371 ------~~~~~~~~~~-~~i~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~~ 414 (507)
.+.+..+..+ ..|.+++|+|+++ ++++ ++.||.|++|++...
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s--~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE--EETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE--EECCCCEEEeEcccc
Confidence 2445555555 5799999999999 5666 789999999998653
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=6.2e-29 Score=239.69 Aligned_cols=282 Identities=8% Similarity=0.067 Sum_probs=221.7
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE-----EeecCccEEEEEe-
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK-----LRTHMHQVIAMCW- 259 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~- 259 (507)
.|+.+|..++.......++ ....+.+++|+|++..++++ +.++.|++||+.+++.... +.+|...+.+++|
T Consensus 102 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~-~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~ 178 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFK--TGFQPKSVRFIDNTRLAIPL-LEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP 178 (433)
T ss_dssp CEEECCBTTCSEEEEEEEE--CSSCBCCCEESSSSEEEEEB-TTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG
T ss_pred EEEEECCCCCcceEEEEEc--CCCCceEEEEeCCCeEEEEe-CCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc
Confidence 5555666555444444443 33456699999955555555 8889999999999988763 3468889999999
Q ss_pred -eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCC
Q psy8285 260 -NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHL 336 (507)
Q Consensus 260 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~ 336 (507)
++.++++++.|+.|++||+++.+ ....+..|...+.+++|+|+++.+++++ ++.|++||++++ +.+..+.. .
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~---~~~~~~~~-~ 253 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLKTLA-YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK---LEIRKTDK-I 253 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETTTCC-EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEECCC-C
T ss_pred CCCEEEEEECCCCEEEEEECCCce-EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC---cEEEEecC-C
Confidence 68899999999999999998865 4566667888999999999999886554 599999999886 55555553 4
Q ss_pred CCeeEEEEccCCCcEEEEEccC-----CCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeC
Q psy8285 337 SAVKAIAWCPWEPTLLATGGGI-----CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 337 ~~v~~~~~~~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~ 411 (507)
..+.+++|+|+++.+++++.+. .|+.|++||+.+++.+..+.....+.+++|+|+++.++++ ++.++.|++||+
T Consensus 254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~~v~v~d~ 332 (433)
T 3bws_A 254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVS-DMCCSKIEVYDL 332 (433)
T ss_dssp SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEE-ETTTTEEEEEET
T ss_pred CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEE-ecCCCEEEEEEC
Confidence 5699999999997777766311 2789999999999888877666788999999999877665 678999999999
Q ss_pred CCccEEEEeeccccceeEEEECCCCCEEEEEeC---------------CCcEEEEecCCCCcccceeecCCCcceEEeec
Q psy8285 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASA---------------DETISIWNCFPRDKKRKARQVGSGSSLEFAIL 476 (507)
Q Consensus 412 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (507)
.+++.+..+. +...+.+++|+|++++|++++. ||.|++||+.+++.............+.|.++
T Consensus 333 ~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d 411 (433)
T 3bws_A 333 KEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPD 411 (433)
T ss_dssp TTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred CCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCC
Confidence 9998888776 6778999999999999988876 57999999998887776655444455555554
Q ss_pred c
Q psy8285 477 K 477 (507)
Q Consensus 477 ~ 477 (507)
.
T Consensus 412 g 412 (433)
T 3bws_A 412 N 412 (433)
T ss_dssp S
T ss_pred C
Confidence 3
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-29 Score=259.11 Aligned_cols=245 Identities=19% Similarity=0.309 Sum_probs=204.1
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC--CCeEEEEeCCCCcEEEEeCCC
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR--TTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~dg~i~iwd~~~ 240 (507)
...|++++|+|++ +++++.||.|++|++.++.......+.+ |...|++++|+|+ +++|+++ +.||.|++||+.+
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~-s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASC-SYDGKVLIWKEEN 86 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECC-CSSCEEEEEECCTTSCSEEEEE-ETTSCEEEEEEET
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccC-CcCceEEEEecCCCCCCEEEEE-eCCCeEEEEECCC
Confidence 3458899999987 7777899999999998766666666777 9999999999988 8999999 9999999999998
Q ss_pred ce--eEEEEeecCccEEEEEe--e--CCEEEEEecCCeEEEEECCCCC-cCceeeecCCCceEEEEEcC-----------
Q psy8285 241 ER--LIQKLRTHMHQVIAMCW--N--GNLLSCGTIGGNILHYDVRTHS-DYPTAITREGDVVCGLKWSP----------- 302 (507)
Q Consensus 241 ~~--~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~----------- 302 (507)
++ .+..+..|...|.+++| + ++.+++++.||.|++||+++.. .....+..|...|.+++|+|
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~ 166 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence 87 67778889999999999 4 8899999999999999998863 23556778999999999999
Q ss_pred --CCCEEEEEe-CCcEEEEEcCCCCCC-CCeeeecCCCCCeeEEEEccCC--CcEEEEEccCCCCeEEEEeCCCCCe---
Q psy8285 303 --NGRYLASGS-NNTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWE--PTLLATGGGICDQTVRLWNSMNGKE--- 373 (507)
Q Consensus 303 --~~~~l~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~--- 373 (507)
+++++++++ ||.|++||++.+... .....+.+|...|++++|+|++ ..++++++. |+.|++||+++++.
T Consensus 167 ~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~--Dg~I~iwd~~~~~~~~~ 244 (753)
T 3jro_A 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ--DRTCIIWTQDNEQGPWK 244 (753)
T ss_dssp CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES--SSCEEEEEESSSSSCCB
T ss_pred CCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec--CCEEEEecCCCCCCcce
Confidence 588999998 699999999876221 3445677899999999999993 356666654 99999999988742
Q ss_pred --eeeee-cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 374 --KCHVK-TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 374 --~~~~~-~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
..... +...+.+++|+|+++++++ ++.||.|++||+..+.
T Consensus 245 ~~~~~~~~~~~~v~~l~~spdg~~l~s--~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 245 KTLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCBSSSSCCSSCCCCEEECTTTCCEEE--ECSSSCEECCBCCSSS
T ss_pred eEEeccCCCCCceEEEEEcCCCCEEEE--EcCCCEEEEEecCCCC
Confidence 12222 3367999999999999999 7889999999998643
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=5.5e-28 Score=230.48 Aligned_cols=237 Identities=11% Similarity=0.048 Sum_probs=187.9
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC---cEEEEeCCCceeEEEEeecCccEEEEEe--
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE---YIDLWHEQEERLIQKLRTHMHQVIAMCW-- 259 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~-- 259 (507)
+.|++||...+....+.. |...+.+++|+|+|++|+++ +.++ .|++||+.+++.. .+..|...+.+++|
T Consensus 159 ~~i~i~d~~g~~~~~l~~----~~~~v~~~~~Spdg~~la~~-s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHR----SPQPLMSPAWSPDGSKLAYV-TFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP 232 (415)
T ss_dssp EEEEEEETTSCSCEEEEE----ESSCEEEEEECTTSSEEEEE-ECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT
T ss_pred ceEEEEcCCCCCCEEEeC----CCCcceeeEEcCCCCEEEEE-EecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC
Confidence 799999998655444333 77899999999999999998 6664 9999999988765 56678889999999
Q ss_pred eCCEEE-EEecCCe--EEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC--C--cEEEEEcCCCCCCCCeeee
Q psy8285 260 NGNLLS-CGTIGGN--ILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN--N--TVKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 260 ~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~--~i~i~d~~~~~~~~~~~~~ 332 (507)
|++.|+ +++.++. |++||+.+++ ...+..|...+.+++|+|||+.|+++++ + .|++||+.++ + ...+
T Consensus 233 dg~~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~---~-~~~l 306 (415)
T 2hqs_A 233 DGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG---A-PQRI 306 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---C-CEEC
T ss_pred CCCEEEEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC---C-EEEE
Confidence 688777 5665554 9999998865 4567778889999999999999988873 4 6788888875 3 3445
Q ss_pred cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCC---eEEEE
Q psy8285 333 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDC---SLKMW 409 (507)
Q Consensus 333 ~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~---~i~v~ 409 (507)
..+...+.+++|+|+|+.+++++....+..|++||+.+++... +..+..+.+++|+|+|++|++ ++.++ .|++|
T Consensus 307 ~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~~--~s~~~~~~~l~~~ 383 (415)
T 2hqs_A 307 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTMVIY--SSSQGMGSVLNLV 383 (415)
T ss_dssp CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSEEEE--EEEETTEEEEEEE
T ss_pred ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCEEEE--EEcCCCccEEEEE
Confidence 5577789999999999877776652113689999999888744 444458999999999999998 44555 79999
Q ss_pred eCCCccEEEEeeccccceeEEEECCCCC
Q psy8285 410 EYPRLHLIEELKIHQERILSAVLSPDQT 437 (507)
Q Consensus 410 d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 437 (507)
|+. ++....+..|.+.|.+++|+|.-.
T Consensus 384 d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 384 STD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred ECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 986 556778888999999999999643
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=1.2e-28 Score=235.15 Aligned_cols=297 Identities=13% Similarity=0.056 Sum_probs=225.6
Q ss_pred ceeeeeeCCCC--EE-EEE----cCC----eEEEEEC--CCCceeEEEecCCCCCCceEEEEEcc--------------C
Q psy8285 167 YTSGLDWGYHD--TL-AVA----LDT----SVYTWNT--KTNKTQLLVEYPTYDNAYISCVAWKP--------------R 219 (507)
Q Consensus 167 ~i~~~~~s~~~--~~-~~~----~~~----~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~--------------~ 219 (507)
.++..+|++.+ ++ +++ .+| .+++||+ .+++......+.+ |...+..+++++ .
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKV-NKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEc-ChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 35668888876 34 444 467 8999999 8888664444555 777788777765 1
Q ss_pred CCeEEEEeCCC------CcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCC---eEEEEECCCCCcCceee
Q psy8285 220 TTDLAVTNTCT------EYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGG---NILHYDVRTHSDYPTAI 288 (507)
Q Consensus 220 ~~~l~~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~ 288 (507)
+..++.+ +.+ +.|++||+.. .....+..|...+.+++| +++.|++++.++ .|++||+.+++ ...+
T Consensus 143 ~~~l~~~-s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--~~~l 218 (415)
T 2hqs_A 143 RTRIAYV-VQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQV 218 (415)
T ss_dssp TCEEEEE-EECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEE
T ss_pred CCEEEEE-EecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--EEEe
Confidence 5566666 333 7999999974 556777889999999999 789999999875 99999999876 3456
Q ss_pred ecCCCceEEEEEcCCCCEEE-EEe-C--CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC--e
Q psy8285 289 TREGDVVCGLKWSPNGRYLA-SGS-N--NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ--T 362 (507)
Q Consensus 289 ~~~~~~v~~~~~~~~~~~l~-~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~--~ 362 (507)
..+...+.+++|+|||+.|+ +++ + ..|++||++++ ....+..|...+.+++|+|+|+.+++++.. ++ .
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~----~~~~l~~~~~~~~~~~~spdg~~l~~~s~~--~g~~~ 292 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQ--AGRPQ 292 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC----CEEECCCCSSCEEEEEECTTSSEEEEEECT--TSSCE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC----CEEeCcCCCCcccceEECCCCCEEEEEECC--CCCcE
Confidence 77888999999999999888 444 4 45999999875 345677788899999999999877776642 34 7
Q ss_pred EEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccC--CCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEE
Q psy8285 363 VRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQ--DCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVA 440 (507)
Q Consensus 363 i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 440 (507)
|.+||+.+++..........+.+++|+|+|++|+++ ... +..|++||+.+++.. .+..+. .+.+++|+|+|++|+
T Consensus 293 i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~-~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 293 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV-SSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVI 369 (415)
T ss_dssp EEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEE-EECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEE
T ss_pred EEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEE-ECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEE
Confidence 888899888754433334678899999999999985 222 358999999988764 455554 899999999999999
Q ss_pred EEeCCC---cEEEEecCCCCcccceeecCCCcceEEeecc
Q psy8285 441 AASADE---TISIWNCFPRDKKRKARQVGSGSSLEFAILK 477 (507)
Q Consensus 441 s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (507)
+++.++ .|++||+............+.+.++.|+|..
T Consensus 370 ~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred EEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence 988877 7999999865554444444566677777643
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=4e-27 Score=209.63 Aligned_cols=208 Identities=11% Similarity=0.093 Sum_probs=145.5
Q ss_pred eeeeeeCCC----CEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEE-eCCCCcEEEEeC-CCc
Q psy8285 168 TSGLDWGYH----DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVT-NTCTEYIDLWHE-QEE 241 (507)
Q Consensus 168 i~~~~~s~~----~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~dg~i~iwd~-~~~ 241 (507)
|++++++|+ +...++....+.+|++. +++.+.++ ...|+.|++|++ .++
T Consensus 114 v~sla~spd~~~~~~~l~s~g~~~~v~~l~-------------------------~g~lv~ss~~g~d~~V~~~~~s~dG 168 (356)
T 2w18_A 114 IRALFCSSDDESEKQVLLKSGNIKAVLGLT-------------------------KRRLVSSSGTLSDQQVEVMTFAEDG 168 (356)
T ss_dssp EEEECC------CCEEEEEEEEEEEEEEET-------------------------TTEEEEEESSSTTCEEEEEEECTTS
T ss_pred eEEEEECCCccccccEEEeCCCeEEEEecC-------------------------CCcEEEecccCCCCcEEEEEECCCC
Confidence 567888888 63222222446667543 23333332 125777888887 446
Q ss_pred eeEEEEeecCccEEEEEe-----eCCEEEEEecCCeEEEEECCCCCcCceeeecCC---CceEEEEEcCCCCEE------
Q psy8285 242 RLIQKLRTHMHQVIAMCW-----NGNLLSCGTIGGNILHYDVRTHSDYPTAITREG---DVVCGLKWSPNGRYL------ 307 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------ 307 (507)
+.+..+..|...+..++| ++..|++++.|++|+|||+++++ ....+.+|. ..+.+++|+|+|+++
T Consensus 169 ~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~ 247 (356)
T 2w18_A 169 GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHP 247 (356)
T ss_dssp CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-EEEEEECCC---CCCEEEEEEETTEEEEEEC--
T ss_pred ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-EEEEEcCCCcceeeeEEEEECCCCCEEEEeccC
Confidence 666677777776666555 46999999999999999999987 555666543 367788999999887
Q ss_pred ------EEEe-CCcEEEEEcCCCCCCCCeeee-----cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee
Q psy8285 308 ------ASGS-NNTVKIWDFRQLDAKRPQVNN-----QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC 375 (507)
Q Consensus 308 ------~~~~-d~~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 375 (507)
++|+ |++|++||..++ +.+..+ .+|...+.+..++ + .++++++. |++|+|||+.+++++.
T Consensus 248 ~~~w~laSGs~D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~--DgTIkIWDl~tGk~l~ 319 (356)
T 2w18_A 248 CAKESESLRSPVFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILT--SGTIAIWDLLLGQCTA 319 (356)
T ss_dssp ----------CCEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEET--TSCEEEEETTTCSEEE
T ss_pred CCcceeeccCCCcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--C-CEEEEEcC--CCcEEEEECCCCcEEE
Confidence 4566 599999999887 444433 3565555444443 4 46677664 9999999999999999
Q ss_pred eeecC-CC-eEEEEECCCCCeEEEEeccCCCeEEEEeC
Q psy8285 376 HVKTD-SQ-VTSILWSEQYRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 376 ~~~~~-~~-i~~~~~s~~~~~l~~~~g~~d~~i~v~d~ 411 (507)
++.++ .. +..++|+|||++|++ |+.|++|+|||+
T Consensus 320 tL~gH~~~vvs~vafSPDG~~LaS--GS~D~TIklWd~ 355 (356)
T 2w18_A 320 LLPPVSDQHWSFVKWSGTDSHLLA--GQKDGNIFVYHY 355 (356)
T ss_dssp EECCC--CCCCEEEECSSSSEEEE--ECTTSCEEEEEE
T ss_pred EecCCCCCeEEEEEECCCCCEEEE--EECCCcEEEecC
Confidence 99866 34 446899999999999 899999999995
No 129
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=7.5e-28 Score=256.47 Aligned_cols=385 Identities=9% Similarity=0.003 Sum_probs=257.6
Q ss_pred CcccccceeeeeeccCcceeeeccccc----cccceeeecccCCcceeeee-cCccc-------ceeeccccccccccCC
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGI----CDQTVRLWNSMNGKEKCHVK-TDSQV-------TSILWSEQYRESSRSK 69 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~----~d~~i~iWd~~~g~~~~~~~-~~~~v-------~~~~~s~~~~~~~~~~ 69 (507)
|.+|.+.|.+++|||||++ ||+++.. .+..|++||+.+|+. ..+. +...+ ..+.|||+++ +....
T Consensus 48 lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~ 124 (1045)
T 1k32_A 48 IVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEI-KRITYFSGKSTGRRMFTDVAGFDPDGN-LIIST 124 (1045)
T ss_dssp EECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEE-EECCCCCEEEETTEECSEEEEECTTCC-EEEEE
T ss_pred eeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCe-EEcccCCCcccccccccccccCCCCCE-EEEEE
Confidence 5679999999999999998 6655410 245899999998874 3344 56666 8899999887 22211
Q ss_pred ccCCceeEeecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccc
Q psy8285 70 MVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKV 149 (507)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (507)
....+ .....+++.++... +. .+.+
T Consensus 125 ~~~~~--------------------------------------------~~~~~~l~~~~~~~----g~-------~~~l 149 (1045)
T 1k32_A 125 DAMQP--------------------------------------------FSSMTCLYRVENDG----IN-------FVPL 149 (1045)
T ss_dssp CTTSS--------------------------------------------STTCCEEEEEEGGG----TE-------EEEC
T ss_pred CCcCC--------------------------------------------CcccceEEEEECCC----CC-------eEEe
Confidence 00000 00001122221100 00 0000
Q ss_pred cCCchhhhcCCCcccccceeeeeeCCCCEEEEEc-------------CCeEEEEECCC-CceeEEEecCCCCCCceEEEE
Q psy8285 150 KAKPERILEAPSIINDFYTSGLDWGYHDTLAVAL-------------DTSVYTWNTKT-NKTQLLVEYPTYDNAYISCVA 215 (507)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~-------------~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~ 215 (507)
.. . ....++|+| ++++.+. +....+|.... ++...+ .+ |...+.++.
T Consensus 150 ~~-------~-------~~~~~~~sp-G~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l---~~-~~~~v~~~~ 210 (1045)
T 1k32_A 150 NL-------G-------PATHILFAD-GRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI---VD-MSTHVSSPV 210 (1045)
T ss_dssp CS-------C-------SCSEEEEET-TEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE---EC-CSSCCEEEE
T ss_pred cC-------C-------CcceeeeCC-CEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC---cC-CCCcccceE
Confidence 00 0 011356777 6444431 23445554322 443333 34 899999999
Q ss_pred EccCCCeEEEEeCCCCcEEEEeCCC-ceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeec--
Q psy8285 216 WKPRTTDLAVTNTCTEYIDLWHEQE-ERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITR-- 290 (507)
Q Consensus 216 ~~~~~~~l~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-- 290 (507)
|+++ ..++++ +.++.+.||.+.. +.....+..|.. +...+| +++.|+++ .++.|++|++.... ...+..
T Consensus 211 ~s~d-~l~~~~-~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~--l~~l~~~~ 284 (1045)
T 1k32_A 211 IVGH-RIYFIT-DIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFS-KGGSIYIFNPDTEK--IEKIEIGD 284 (1045)
T ss_dssp EETT-EEEEEE-CTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEE-ETTEEEEECTTTCC--EEECCCCC
T ss_pred EeCC-EEEEEE-eccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCEEEEE-eCCEEEEecCCceE--eeeeccCc
Confidence 9988 455555 7889999998653 344455554442 334455 88888887 48999999984332 223332
Q ss_pred ---------CCCceEEEEEc-CCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCC-CeeEEEEccCCCcEEEEEccCC
Q psy8285 291 ---------EGDVVCGLKWS-PNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLS-AVKAIAWCPWEPTLLATGGGIC 359 (507)
Q Consensus 291 ---------~~~~v~~~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~ 359 (507)
|...+.+++|+ |||+.|++++++.+++|++..+ ....+..|.. .+..++|+ +++.+++.+.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~--- 356 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGT----YVLKVPEPLRIRYVRRGGD-TKVAFIHGTR--- 356 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSS----BEEECSCCSCEEEEEECSS-SEEEEEEEET---
T ss_pred ccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCC----ceEEccCCCcceEEeeeEc-CCCeEEEEEC---
Confidence 23468899999 9999999999999999999875 3444566777 89999999 8866666554
Q ss_pred CCeEE-EEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCE
Q psy8285 360 DQTVR-LWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 438 (507)
Q Consensus 360 d~~i~-i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 438 (507)
+..+. +||+.+++......+...+..++|+|||++|++ ++.++.|++||+.+++....+.+|...+.+++|+|||++
T Consensus 357 ~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~--~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVV--ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF 434 (1045)
T ss_dssp TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEE--EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCE
T ss_pred CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEE--ECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCe
Confidence 77888 999988776544433368999999999999998 678899999999999888888789999999999999999
Q ss_pred EEEEeCCC----------cEEEEecCCCCcccceeecCCCcceEEeeccCc
Q psy8285 439 VAAASADE----------TISIWNCFPRDKKRKARQVGSGSSLEFAILKQP 479 (507)
Q Consensus 439 l~s~~~dg----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (507)
|++++.++ .|++||+.+++.............+.|+++...
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~ 485 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKN 485 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCE
T ss_pred EEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCE
Confidence 98887654 899999988763333223333445566666543
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=1.5e-25 Score=207.90 Aligned_cols=272 Identities=10% Similarity=0.042 Sum_probs=204.6
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee-EEEEeecCccEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-IQKLRTHMHQVIA 256 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~ 256 (507)
+++.+.++.|.+||..+++....... +...+ .++|+|+++++++++..++.|.+||+.+++. ...+..+..+..+
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEILNQITL---GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD 88 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEEC---CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC
T ss_pred EEEecCCCeEEEEeCcccceeeeEEc---cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc
Confidence 44455889999999999988777664 45556 9999999998887746689999999999887 7777767666655
Q ss_pred EEe--eCCEEEEEecCC---eEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C-Cc-EEEEEcCCCCCCCC
Q psy8285 257 MCW--NGNLLSCGTIGG---NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N-NT-VKIWDFRQLDAKRP 328 (507)
Q Consensus 257 ~~~--~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~-i~i~d~~~~~~~~~ 328 (507)
++| ++++++++..++ .|.+||+.+++ ....+. ......+++|+|+|+++++++ + +. |.+|++........
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNK-FISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTE-EEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCC-eEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 777 688888555553 89999998875 333333 345578999999998666654 4 78 99999986411111
Q ss_pred e-eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe---eeeeecCCCeEEEEECCCCCeEEEEeccCCC
Q psy8285 329 Q-VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE---KCHVKTDSQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 329 ~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
. .........+..++|+|+++++++++.. ++.|++||+.+++. +..+.....+..++|+|+|++++++ ...++
T Consensus 167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~ 243 (331)
T 3u4y_A 167 TGQEFISGGTRPFNITFTPDGNFAFVANLI--GNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL-TESTV 243 (331)
T ss_dssp EEEEEECSSSSEEEEEECTTSSEEEEEETT--TTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE-CSSEE
T ss_pred cCCccccCCCCccceEECCCCCEEEEEeCC--CCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE-EcCCC
Confidence 1 1222345568999999999878887765 89999999999988 7778777788899999999988775 45678
Q ss_pred eEEEEeCCCccE--EEEeecc----ccc---eeEEEECCCCCEEEEEeC-CCcEEEEecCCCCc
Q psy8285 405 SLKMWEYPRLHL--IEELKIH----QER---ILSAVLSPDQTCVAAASA-DETISIWNCFPRDK 458 (507)
Q Consensus 405 ~i~v~d~~~~~~--~~~~~~~----~~~---i~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~ 458 (507)
.|.+||..+++. +..+..+ ... ...++|+||+++|++++. ++.|.+|++.....
T Consensus 244 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 244 DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 899999998876 4433322 222 355899999998866554 57999999986543
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=1.4e-26 Score=238.80 Aligned_cols=272 Identities=9% Similarity=0.092 Sum_probs=198.1
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCC---ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTN---KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
+..++||||+ .++.+.++.|++||+.++ +...+ .. +...+.+++|+|||++|+++ + ++.|++||+.+++.
T Consensus 111 v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l---~~-~~~~~~~~~~SPDG~~la~~-~-~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQL---TH-GEGFATDAKLSPKGGFVSFI-R-GRNLWVIDLASGRQ 184 (741)
T ss_dssp SCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBC---CC-SSSCEEEEEECTTSSEEEEE-E-TTEEEEEETTTTEE
T ss_pred cceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEc---cc-CCcccccccCCCCCCEEEEE-e-CCcEEEEecCCCCE
Confidence 5579999998 666666699999999988 54433 23 67789999999999999988 4 56999999998877
Q ss_pred EEEEeecCcc----------------EEEEEe--eCCEEEEEecCC---------------------------------e
Q psy8285 244 IQKLRTHMHQ----------------VIAMCW--NGNLLSCGTIGG---------------------------------N 272 (507)
Q Consensus 244 ~~~~~~~~~~----------------v~~~~~--~~~~l~~~~~dg---------------------------------~ 272 (507)
......+... +..+.| |++.|++++.|+ .
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 6555444332 366778 799999987765 7
Q ss_pred EEEEECCC-CCcCceeee--cCCCceEEEEEcCCCCEEEEEe------CCcEEEEEcCCCCCCCCeeeecCCCC----Ce
Q psy8285 273 ILHYDVRT-HSDYPTAIT--REGDVVCGLKWSPNGRYLASGS------NNTVKIWDFRQLDAKRPQVNNQCHLS----AV 339 (507)
Q Consensus 273 i~i~d~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~----~v 339 (507)
|.+||+.+ ++ ...... .+...+..++| |||+.|+++. +..|++||+.++ +....+..+.. .+
T Consensus 265 l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 265 LGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN---QQRVLAHETSPTWVPLH 339 (741)
T ss_dssp EEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC---CEEEEEEEECSSCCCCC
T ss_pred EEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC---ceEEEEEcCCCCcCCcC
Confidence 88999987 65 222222 46778999999 9999988754 267999999887 44444443332 45
Q ss_pred eEEEEccCCCcEEEEEccCCCCeEEEEeCC-CCCeeeeeecC-CCeEEE-EECCCCCeEEEEeccCCC--eEEEEeCCC-
Q psy8285 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSM-NGKEKCHVKTD-SQVTSI-LWSEQYRELVTSHGKQDC--SLKMWEYPR- 413 (507)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~-~~i~~~-~~s~~~~~l~~~~g~~d~--~i~v~d~~~- 413 (507)
..++|+|||+ +++++.. ++.+++|.+. +++ ...+..+ ..+..+ .|+|+++.|+++ ++.++ .++||++..
T Consensus 340 ~~~~~spdg~-~~~~~~~--~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~-~~~~~~~~~~l~~~~~~ 414 (741)
T 2ecf_A 340 NSLRFLDDGS-ILWSSER--TGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFR-AGIESARESQIYAVPLQ 414 (741)
T ss_dssp SCCEECTTSC-EEEEECT--TSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEE-ECSSCTTCBEEEEEETT
T ss_pred CceEECCCCe-EEEEecC--CCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEE-EeCCCCceEEEEEEEcC
Confidence 6899999997 6666654 7777777654 344 5555444 567777 599999988765 45555 899999864
Q ss_pred ccEEEEeeccccceeEEEECCCCCEEEEEeCC----CcEEEEecCCC
Q psy8285 414 LHLIEELKIHQERILSAVLSPDQTCVAAASAD----ETISIWNCFPR 456 (507)
Q Consensus 414 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~ 456 (507)
+.....+.. ...+..++|+|||++|+....+ ..+.+|+....
T Consensus 415 g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 415 GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 555566665 5668899999999988765443 46888887543
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=6.9e-25 Score=215.39 Aligned_cols=276 Identities=10% Similarity=0.084 Sum_probs=213.6
Q ss_pred eeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC--CCceeEEEE
Q psy8285 172 DWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE--QEERLIQKL 247 (507)
Q Consensus 172 ~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~--~~~~~~~~~ 247 (507)
.++|++ +++.+.++.|.+||..+++....+... + .+..++|+|++++|+++ +.|+.|++||+ .+++.+..+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g--~--~~~~v~~spdg~~l~v~-~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG--Y--AVHISRMSASGRYLLVI-GRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS--T--TEEEEEECTTSCEEEEE-ETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecC--c--ccceEEECCCCCEEEEE-CCCCeEEEEECcCCCCcEEEEE
Confidence 367777 334447899999999999887766542 2 28899999999999999 88899999999 888888888
Q ss_pred eecCccEEEEEe------eCCEEEEEe-cCCeEEEEECCCCCcCceeeec----------C-CCceEEEEEcCCCCEEEE
Q psy8285 248 RTHMHQVIAMCW------NGNLLSCGT-IGGNILHYDVRTHSDYPTAITR----------E-GDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 248 ~~~~~~v~~~~~------~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~----------~-~~~v~~~~~~~~~~~l~~ 309 (507)
.. ...+..++| +++++++++ .+++|.+||..+.+ +...+.. | ...+..+.++|+++.+++
T Consensus 219 ~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 219 KI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp EC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred ec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-cceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence 74 445677777 467888887 48999999998876 3333332 2 236889999998877666
Q ss_pred Ee--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-----CC
Q psy8285 310 GS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-----SQ 382 (507)
Q Consensus 310 ~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~ 382 (507)
.. ++.|.+||+.+..... +..+ .+...+..+.|+|+++++++++.. +++|.+||+.+++++..+... ..
T Consensus 297 s~~~~g~i~vvd~~~~~~l~-~~~i-~~~~~~~~~~~spdg~~l~va~~~--~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 297 NVKETGKVLLVNYKDIDNLT-VTSI-GAAPFLHDGGWDSSHRYFMTAANN--SNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp EETTTTEEEEEECTTSSSCE-EEEE-ECCSSCCCEEECTTSCEEEEEEGG--GTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred EECCCCeEEEEEecCCCcce-eEEe-ccCcCccCceECCCCCEEEEEecC--CCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 55 4999999998762211 1233 356678899999999888887765 899999999999988887642 22
Q ss_pred eEEEEECCCCCeEEEEeccCCCeEEEEeCCC-------ccEEEEeeccccceeEEEECCCCCEEEEEe-------CCCcE
Q psy8285 383 VTSILWSEQYRELVTSHGKQDCSLKMWEYPR-------LHLIEELKIHQERILSAVLSPDQTCVAAAS-------ADETI 448 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-------~dg~i 448 (507)
...+ ++|++..++++....|++|.+||+.+ ++.++++.+|...+..++++|++++|++++ .+++|
T Consensus 373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v 451 (543)
T 1nir_A 373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV 451 (543)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCE
T ss_pred Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceE
Confidence 3333 57874444443123689999999988 899999999988899999999999999987 26799
Q ss_pred EEEecCCCCcc
Q psy8285 449 SIWNCFPRDKK 459 (507)
Q Consensus 449 ~iw~~~~~~~~ 459 (507)
.+||+.+.+..
T Consensus 452 ~v~d~~~~~~~ 462 (543)
T 1nir_A 452 AVFDLKNLDAK 462 (543)
T ss_dssp EEEETTCTTSC
T ss_pred EEEECCCCCCC
Confidence 99999998876
No 133
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.3e-26 Score=219.72 Aligned_cols=263 Identities=13% Similarity=0.136 Sum_probs=174.8
Q ss_pred CCceEEEEEc---cCCCeEEEEeCCCCcEEEEeCCCc-------eeEEE--EeecCccEEEEEe----------------
Q psy8285 208 NAYISCVAWK---PRTTDLAVTNTCTEYIDLWHEQEE-------RLIQK--LRTHMHQVIAMCW---------------- 259 (507)
Q Consensus 208 ~~~v~~~~~~---~~~~~l~~~~~~dg~i~iwd~~~~-------~~~~~--~~~~~~~v~~~~~---------------- 259 (507)
+....++.|. |++..++++ +.++.|.+|+.... ..... ...+..++..+.|
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAI-GHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEE-EESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEE-ECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 3455667773 445556665 56888999975321 11111 1123333433333
Q ss_pred ------eCCEEEEEecCCeEEEEECCCCCcC----ceeeecCCCceEEEEEcC--------CCCEEEEEe-CCcEEEEEc
Q psy8285 260 ------NGNLLSCGTIGGNILHYDVRTHSDY----PTAITREGDVVCGLKWSP--------NGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 260 ------~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~--------~~~~l~~~~-d~~i~i~d~ 320 (507)
++.+|++++.|++|++||.+.++.. ...+.+|.+.|++++|+| |+++|++++ |++|+|||+
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 3568999999999999999876522 234578999999999998 889999999 699999999
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee----------------------
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK---------------------- 378 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---------------------- 378 (507)
+++ .+......|..++.+++|+|++..++++++. |++|++||+++++......
T Consensus 174 ~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~--d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 174 TDE---GPILAGYPLSSPGISVQFRPSNPNQLIVGER--NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp ETT---EEEEEEEECSSCEEEEEEETTEEEEEEEEET--TSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred CCC---ceeeeecCCCCCcEEEEECCCCCceEEecCC--CCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 876 6777777899999999999998777888775 9999999998876433221
Q ss_pred ---cC-CCeEEEEEC-CCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEEC------------------C-
Q psy8285 379 ---TD-SQVTSILWS-EQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLS------------------P- 434 (507)
Q Consensus 379 ---~~-~~i~~~~~s-~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s------------------~- 434 (507)
.+ ..+.++.|+ |+++.|++ ++.|+.+++||+..++....+..|...+..+.+. |
T Consensus 249 ~~~~~~~~v~~v~~~~~dg~~l~s--~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 249 HSSGIASSLANVRWIGSDGSGILA--MCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp ---CCSSSCSEEEEETTTTCEEEE--ECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred ecccccccceeeeeecCCCCEEEE--EeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 11 457788876 89999999 8899999999998887776666665544443333 3
Q ss_pred -CCCEEEEEeCCCcEEEEecCCCCccccee-ecCCCcceEEeeccC
Q psy8285 435 -DQTCVAAASADETISIWNCFPRDKKRKAR-QVGSGSSLEFAILKQ 478 (507)
Q Consensus 435 -~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 478 (507)
++.++++|+.||.|++||+.+++...... ....+.++.|+++..
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~ 372 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGS 372 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSS
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCC
Confidence 33466788899999999999887765433 334555666665543
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=1.1e-25 Score=239.71 Aligned_cols=368 Identities=12% Similarity=0.031 Sum_probs=257.5
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccC-CcceeeeecCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-GKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~-g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|.+|.+.|.+++|+|+ .++++++ .|+.++||.+.. +.....+.....+....|+|+++.+....
T Consensus 199 l~~~~~~v~~~~~s~d--~l~~~~~--~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~----------- 263 (1045)
T 1k32_A 199 IVDMSTHVSSPVIVGH--RIYFITD--IDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK----------- 263 (1045)
T ss_dssp EECCSSCCEEEEEETT--EEEEEEC--TTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE-----------
T ss_pred CcCCCCcccceEEeCC--EEEEEEe--ccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEe-----------
Confidence 3579999999999998 4566766 689999998864 55555555444566778998887554320
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
+..+..|.+... .+..+... . ....+ .
T Consensus 264 ---~~~i~~~d~~~~----------------------------~l~~l~~~--------------~--~~~~~------~ 290 (1045)
T 1k32_A 264 ---GGSIYIFNPDTE----------------------------KIEKIEIG--------------D--LESPE------D 290 (1045)
T ss_dssp ---TTEEEEECTTTC----------------------------CEEECCCC--------------C--CCBCC------S
T ss_pred ---CCEEEEecCCce----------------------------EeeeeccC--------------c--ccccc------c
Confidence 111111111000 00000000 0 00000 0
Q ss_pred CcccccceeeeeeC-CCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCC-ceEEEEEccCCCeEEEEeCCCCcEE-EE
Q psy8285 161 SIINDFYTSGLDWG-YHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA-YISCVAWKPRTTDLAVTNTCTEYID-LW 236 (507)
Q Consensus 161 ~~~~~~~i~~~~~s-~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~dg~i~-iw 236 (507)
.......+..++|| |++ .++.+.++.|++|+..+++... +.. +.. .+..++|+ +|+.|+++ +.++.+. +|
T Consensus 291 ~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~---~~~-~~~~~~~~~~~s-dg~~l~~~-s~~~~l~~~~ 364 (1045)
T 1k32_A 291 RIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK---VPE-PLRIRYVRRGGD-TKVAFIHG-TREGDFLGIY 364 (1045)
T ss_dssp EEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE---CSC-CSCEEEEEECSS-SEEEEEEE-ETTEEEEEEE
T ss_pred ccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE---ccC-CCcceEEeeeEc-CCCeEEEE-ECCCceEEEE
Confidence 00112246789999 998 5666668999999998877543 233 566 89999999 99999988 6688888 99
Q ss_pred eCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CC
Q psy8285 237 HEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NN 313 (507)
Q Consensus 237 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~ 313 (507)
|+.+++... +..|...+..++| |++.|++++.++.|++||+.+++ .......|...+.+++|+|||++|++++ ++
T Consensus 365 d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~ 442 (1045)
T 1k32_A 365 DYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAYGFPLK 442 (1045)
T ss_dssp ETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred ECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEeccCCCCCccceEECCCCCeEEEEecCc
Confidence 988776544 3478788999999 79999999999999999999876 4445557888899999999999998876 34
Q ss_pred ----------cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-----------
Q psy8285 314 ----------TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK----------- 372 (507)
Q Consensus 314 ----------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----------- 372 (507)
.|++||+.++ + ...+..|...+..++|+|+|+.+++.+. ++...+|+.....
T Consensus 443 ~~~~~~~~~~~i~l~d~~~g---~-~~~l~~~~~~~~~~~~spdG~~l~~~s~---~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1045)
T 1k32_A 443 HGETDGYVMQAIHVYDMEGR---K-IFAATTENSHDYAPAFDADSKNLYYLSY---RSLDPSPDRVVLNFSFEVVSKPFV 515 (1045)
T ss_dssp SSTTCSCCEEEEEEEETTTT---E-EEECSCSSSBEEEEEECTTSCEEEEEES---CCCCCEECSSSSCEECCSCBEEEE
T ss_pred cccccCCCCCeEEEEECCCC---c-EEEeeCCCcccCCceEcCCCCEEEEEec---ccCCcCcchhccccccccCceeEE
Confidence 8999999876 3 6667778888999999999987776654 4544555432211
Q ss_pred --------------------------------eeeeeecC-CCeEEEEECCCCCeEEEE-----------eccCCCeEEE
Q psy8285 373 --------------------------------EKCHVKTD-SQVTSILWSEQYRELVTS-----------HGKQDCSLKM 408 (507)
Q Consensus 373 --------------------------------~~~~~~~~-~~i~~~~~s~~~~~l~~~-----------~g~~d~~i~v 408 (507)
.+..+..+ ..+..++++|+++.+++. .......|.+
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~ 595 (1045)
T 1k32_A 516 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 595 (1045)
T ss_dssp EESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEE
T ss_pred EEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEE
Confidence 11122223 568899999999877741 1223557899
Q ss_pred EeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 409 WEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 409 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
||+.+++... +. ..+..++|||||++|++++.+ .|++||+.+++
T Consensus 596 ~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 596 YDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred EECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 9998877533 32 568899999999999999877 89999998876
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=2e-25 Score=229.59 Aligned_cols=250 Identities=12% Similarity=0.105 Sum_probs=177.5
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccE---------
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQV--------- 254 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v--------- 254 (507)
++.+++||+.+++...+....+ +...+..++|+|||+.|+++ + ++.|++||+.+++.......+...+
T Consensus 90 ~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~~~~SPdG~~la~~-~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v 166 (723)
T 1xfd_A 90 TGYYVLSKIPHGDPQSLDPPEV-SNAKLQYAGWGPKGQQLIFI-F-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL 166 (723)
T ss_dssp CSEEEEEESSSCCCEECCCTTC-CSCCCSBCCBCSSTTCEEEE-E-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred eeeEEEEECCCCceEeccCCcc-ccccccccEECCCCCEEEEE-E-CCeEEEEECCCCceEEEecCCCCCceECccccee
Confidence 3789999999988644444333 55568999999999999998 4 4899999999988776665544333
Q ss_pred ---------EEEEe--eCCEEEEEecCC----------------------------------eEEEEECCCCCcCceeee
Q psy8285 255 ---------IAMCW--NGNLLSCGTIGG----------------------------------NILHYDVRTHSDYPTAIT 289 (507)
Q Consensus 255 ---------~~~~~--~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~ 289 (507)
.+++| |++.|++++.++ .|++||+.+++ ....+.
T Consensus 167 ~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~ 245 (723)
T 1xfd_A 167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-HDLEMM 245 (723)
T ss_dssp HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-CCEECC
T ss_pred EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-eeEEee
Confidence 67888 789999887553 79999998765 233444
Q ss_pred cC------CCceEEEEEcCCCCEEEEEe-C----CcEEEEEcCCCCCCCCeeeecC-CCCCe----eEEEEccCCCcEEE
Q psy8285 290 RE------GDVVCGLKWSPNGRYLASGS-N----NTVKIWDFRQLDAKRPQVNNQC-HLSAV----KAIAWCPWEPTLLA 353 (507)
Q Consensus 290 ~~------~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~~~-~~~~v----~~~~~~~~~~~~~~ 353 (507)
.+ ...+..++|+|||+++++.. . ..|++||+.++ +....... +...+ ..++|+|||+.+++
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG---VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF 322 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC---CEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC---cceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence 33 56789999999999987764 1 57999999887 44433322 33333 37899999988877
Q ss_pred E-EccCCCC------eEEEEe-CCCCCe--eeeeec-CCCeEE-EEECCCCCeEEEEeccCC--CeEEEEeCCCcc--EE
Q psy8285 354 T-GGGICDQ------TVRLWN-SMNGKE--KCHVKT-DSQVTS-ILWSEQYRELVTSHGKQD--CSLKMWEYPRLH--LI 417 (507)
Q Consensus 354 ~-~~~~~d~------~i~i~d-~~~~~~--~~~~~~-~~~i~~-~~~s~~~~~l~~~~g~~d--~~i~v~d~~~~~--~~ 417 (507)
. +.. ++ .|.+|| ..+++. ...+.. +..+.. ++|+|+|+.|++. +..+ +.+++|++.... ..
T Consensus 323 ~~~~~--~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~-~~~~~~~~~~l~~~~~~~~~~~ 399 (723)
T 1xfd_A 323 IRAIP--QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL-STEDLPRRRQLYSANTVGNFNR 399 (723)
T ss_dssp EEEEC--CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE-ESSSCTTCCEEEEECSSTTCCC
T ss_pred EEecc--cCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEE-EcCCCCcceEEEEEeCCCCCCc
Confidence 5 433 56 577788 444441 444443 344554 6999999999874 3444 789999886432 33
Q ss_pred EEeec---cccceeEEEECCCCCEEEEEe
Q psy8285 418 EELKI---HQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 418 ~~~~~---~~~~i~~~~~s~~~~~l~s~~ 443 (507)
..+.. |...+..++|+|||++|+...
T Consensus 400 ~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 400 QCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp BCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred ceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 44443 567789999999999887653
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=1.7e-25 Score=230.70 Aligned_cols=301 Identities=11% Similarity=0.081 Sum_probs=219.7
Q ss_pred ceeeeeeCCCC--EEEEEc-CC-----eEEEEECCCCceeEEEecCCCCC----------------------CceEEEEE
Q psy8285 167 YTSGLDWGYHD--TLAVAL-DT-----SVYTWNTKTNKTQLLVEYPTYDN----------------------AYISCVAW 216 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~-~~-----~i~iw~~~~~~~~~~~~~~~~~~----------------------~~v~~~~~ 216 (507)
.+..++||||+ +++++. ++ .|++||+.+++...+....+ +. ..+.+++|
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKV-VLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGG-TC--------------------CCEESCCCEE
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhh-cccccccccchhhhhhhhhhhccccCcceeEE
Confidence 36789999998 445555 77 89999999998877776543 32 34889999
Q ss_pred ccCCCeEEEEeCCCCcEEEEeCCCce--eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCC
Q psy8285 217 KPRTTDLAVTNTCTEYIDLWHEQEER--LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREG 292 (507)
Q Consensus 217 ~~~~~~l~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (507)
+|||++|+++ +. +.|++||+.++. ....+..+...+..++| ||+.|++++ ++.|++||+.+++ .......+.
T Consensus 117 SpDg~~l~~~-~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~-~~~~~~~~~ 192 (741)
T 2ecf_A 117 SPDAQRLLFP-LG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR-QMQLTADGS 192 (741)
T ss_dssp CTTSSEEEEE-ET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE-EEECCCCCC
T ss_pred CCCCCEEEEE-eC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC-EEEeccCCc
Confidence 9999999998 44 999999999873 44556678888999999 799999887 5699999998765 222222222
Q ss_pred Cc----------------eEEEEEcCCCCEEEEEe-CC---------------------------------cEEEEEcCC
Q psy8285 293 DV----------------VCGLKWSPNGRYLASGS-NN---------------------------------TVKIWDFRQ 322 (507)
Q Consensus 293 ~~----------------v~~~~~~~~~~~l~~~~-d~---------------------------------~i~i~d~~~ 322 (507)
.. +..++|+|||++|++++ |+ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 21 46799999999999886 44 788999887
Q ss_pred -CCCCCCeeeec--CCCCCeeEEEEccCCCcEEEEEc--cCCCCeEEEEeCCCCCeeeeeecCC-----CeEEEEECCCC
Q psy8285 323 -LDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLLATGG--GICDQTVRLWNSMNGKEKCHVKTDS-----QVTSILWSEQY 392 (507)
Q Consensus 323 -~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~--~~~d~~i~i~d~~~~~~~~~~~~~~-----~i~~~~~s~~~ 392 (507)
+ +...... .|...+..++| |||+.+++... ...+..|++||+.+++....+..+. .+..++|+|||
T Consensus 273 ~~---~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 273 QA---QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp TC---CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CC---ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence 6 3333222 46778999999 99987776653 1236789999999998777665442 34689999999
Q ss_pred CeEEEEeccCCCeEEEEeCC-CccEEEEeeccccceeEE-EECCCCCEEEE-EeCCC--cEEEEecCC-CCcccceeecC
Q psy8285 393 RELVTSHGKQDCSLKMWEYP-RLHLIEELKIHQERILSA-VLSPDQTCVAA-ASADE--TISIWNCFP-RDKKRKARQVG 466 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~-~~~~~~~~~~~~~~i~~~-~~s~~~~~l~s-~~~dg--~i~iw~~~~-~~~~~~~~~~~ 466 (507)
+++++ ++.+|.++||.+. .++ ...+..|...+..+ .|+|+++.|+. ++.++ .+++|++.. +.....+....
T Consensus 349 ~~~~~--~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~ 425 (741)
T 2ecf_A 349 SILWS--SERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAP 425 (741)
T ss_dssp CEEEE--ECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSC
T ss_pred eEEEE--ecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCC
Confidence 97777 6778877777665 344 77788888888887 59999997765 44455 899999864 33333333333
Q ss_pred CCcceEEeeccCc
Q psy8285 467 SGSSLEFAILKQP 479 (507)
Q Consensus 467 ~~~~~~~~~~~~~ 479 (507)
....+.|+++...
T Consensus 426 ~~~~~~~spdg~~ 438 (741)
T 2ecf_A 426 GMHSASFARNASV 438 (741)
T ss_dssp SEEEEEECTTSSE
T ss_pred CceEEEECCCCCE
Confidence 3445566665543
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=2.8e-24 Score=200.24 Aligned_cols=265 Identities=11% Similarity=0.094 Sum_probs=187.9
Q ss_pred EcCCeEEEEECC-CCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC--Cce--eEEEEeecCccEEE
Q psy8285 182 ALDTSVYTWNTK-TNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ--EER--LIQKLRTHMHQVIA 256 (507)
Q Consensus 182 ~~~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~--~~~--~~~~~~~~~~~v~~ 256 (507)
+.++.|++|++. +++........ +...+.+++|+|++++|++++..++.|.+|++. +++ .+..+..+. .+..
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~ 88 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTH 88 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSE
T ss_pred CCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcE
Confidence 479999999985 34433333332 667889999999999999883444999999997 444 334444433 6778
Q ss_pred EEe--eCCEEEEEec-CCeEEEEECCCCC--cCceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCe
Q psy8285 257 MCW--NGNLLSCGTI-GGNILHYDVRTHS--DYPTAITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 257 ~~~--~~~~l~~~~~-dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~ 329 (507)
++| +++.|++++. ++.|.+||+..+. ...... .....+.+++|+|+++++++++ ++.|++||+.........
T Consensus 89 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 89 ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred EEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeee
Confidence 888 6777766654 8899999995221 122222 3344688899999999888776 599999999872111111
Q ss_pred e--eec-CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC--CCe--eeeee---c----CCCeEEEEECCCCCeE
Q psy8285 330 V--NNQ-CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN--GKE--KCHVK---T----DSQVTSILWSEQYREL 395 (507)
Q Consensus 330 ~--~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~--~~~~~---~----~~~i~~~~~s~~~~~l 395 (507)
. ... .....+..++|+|+++.+++++.. ++.|.+||+.. ++. ...+. . ...+..++|+|++++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~--~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l 245 (343)
T 1ri6_A 168 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL--NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 245 (343)
T ss_dssp EEEEEECSTTCCEEEEEECTTSSEEEEEETT--TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred cccccccCCCCCcceEEECCCCCEEEEEeCC--CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence 1 222 234578899999999878777754 89999999954 432 22222 1 1356789999999998
Q ss_pred EEEeccCCCeEEEEeCC----CccEEEEeeccccceeEEEECCCCCEEEEEe-CCCcEEEEecC
Q psy8285 396 VTSHGKQDCSLKMWEYP----RLHLIEELKIHQERILSAVLSPDQTCVAAAS-ADETISIWNCF 454 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~dg~i~iw~~~ 454 (507)
+++ +..++.|.+||+. +.+.+..+..+.. +..++|+|++++|++++ .++.|.+|++.
T Consensus 246 ~v~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 246 YAC-DRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEE-ETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEE-ecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 864 5678999999998 3345555555444 88999999999888887 68999999665
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=7e-24 Score=198.41 Aligned_cols=266 Identities=12% Similarity=0.091 Sum_probs=208.9
Q ss_pred eeeeeeCCCC--EEEEEc-------CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 168 TSGLDWGYHD--TLAVAL-------DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~-------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
+..++|+|++ +++++. ++.|.+||..+++....... ...+..++|+|+++++++++..++.|.+||.
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN----DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE----SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec----CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 4568999987 444432 66899999999988777664 3347789999999977777577899999999
Q ss_pred CCceeEEEEeecCcc---------EEEEEe--eCCEEEEEe--cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC
Q psy8285 239 QEERLIQKLRTHMHQ---------VIAMCW--NGNLLSCGT--IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR 305 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~---------v~~~~~--~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 305 (507)
.+++.+..+..+... +.++.| +++.+++++ .++.|.+||..+.+ ....+..+...+.+++|+|+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK-LKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE-EEEEECCCCTTCCCCEEETTTT
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc-eEEEecCCCCccceEEECCCCC
Confidence 999988887764322 677888 677777665 47889999998875 3444443555678899999999
Q ss_pred EEEEEe-CCcEEEEEcCCCCCCCCeeeecC----CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 306 YLASGS-NNTVKIWDFRQLDAKRPQVNNQC----HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 306 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
++++++ ++.|.+||+.++ +....+.. +...+..++|+|+++.++++... ++.|.+||+.+++.+..+...
T Consensus 198 ~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~~ 272 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSK--AAEVLVVDTRNGNILAKVAAP 272 (353)
T ss_dssp EEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS--SSEEEEEETTTCCEEEEEECS
T ss_pred EEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC--CCEEEEEECCCCcEEEEEEcC
Confidence 998888 599999999887 55544432 45568889999999888777764 799999999999988877765
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCC
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 446 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg 446 (507)
.. ..++|+|++++++++ ...++.|.+||..+++.+..+..+ ..+.+++|+|+|++|+.+..++
T Consensus 273 ~~-~~~~~s~dg~~l~v~-~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 273 ES-LAVLFNPARNEAYVT-HRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp SC-CCEEEETTTTEEEEE-ETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred CC-ceEEECCCCCEEEEE-ECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 43 579999999987774 457899999999999988887754 4678999999999887766553
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=6e-25 Score=225.28 Aligned_cols=276 Identities=13% Similarity=0.112 Sum_probs=203.1
Q ss_pred ceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC-----c
Q psy8285 167 YTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE-----E 241 (507)
Q Consensus 167 ~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~-----~ 241 (507)
.+.+++||||+.++.+.++.|++||+.+++...+.. +...+.+++|+|+|++|+++ .++.|++||+.+ +
T Consensus 83 ~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~~----~~~~~~~~~~SpdG~~la~~--~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLFD----TNEETASLDFSPVGDRVAYV--RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEEC----CTTCCTTCEECTTSSEEEEE--ETTEEEEEECBCTTSCCC
T ss_pred CceeEEECCCCeEEEEECCEEEEEECCCCceEEccC----CcccccCCcCCCCCCEEEEE--ECCeEEEEecCcccccCC
Confidence 366799999997777778999999999887665544 55678899999999999986 579999999988 7
Q ss_pred eeEEEEeecCcc--------------EEEEEe--eCCEEEEEe---------------------------------cCCe
Q psy8285 242 RLIQKLRTHMHQ--------------VIAMCW--NGNLLSCGT---------------------------------IGGN 272 (507)
Q Consensus 242 ~~~~~~~~~~~~--------------v~~~~~--~~~~l~~~~---------------------------------~dg~ 272 (507)
+.......+... +.++.| |++.|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 766544444332 367888 799999987 3467
Q ss_pred EEEEECCCCCcCceee-ecCCCceEEEEEcCCCCEEEEEe-CC-----cEEEEEcCCCCCCCCeeeec--CCCC---Cee
Q psy8285 273 ILHYDVRTHSDYPTAI-TREGDVVCGLKWSPNGRYLASGS-NN-----TVKIWDFRQLDAKRPQVNNQ--CHLS---AVK 340 (507)
Q Consensus 273 i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-d~-----~i~i~d~~~~~~~~~~~~~~--~~~~---~v~ 340 (507)
|++||+.+++...... ..+...+.+++|+|||+.|++++ ++ .|++||+.++ +....+. .+.. .+.
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g---~~~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG---RFVRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC---CEEEEEEEEECSSCCCCCS
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC---ceeeEEEEccCCCeECccC
Confidence 9999998765211111 24667799999999999988876 44 8999999876 2332222 1222 346
Q ss_pred EEEEcc--CCCcEEEEEccCCCCeEEEEeCC-CCCeeeeeecC-CCeEE-EEECCCCCeEEEEeccCCC----eEEEEeC
Q psy8285 341 AIAWCP--WEPTLLATGGGICDQTVRLWNSM-NGKEKCHVKTD-SQVTS-ILWSEQYRELVTSHGKQDC----SLKMWEY 411 (507)
Q Consensus 341 ~~~~~~--~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~-~~i~~-~~~s~~~~~l~~~~g~~d~----~i~v~d~ 411 (507)
.+.|+| +|+ +++++.. ++.+++|++. +++.+..+..+ ..+.. ++|+|+++.|+++ +..++ .|..||+
T Consensus 314 ~~~~sp~~dg~-~l~~~~~--~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~-~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 314 PLTFLPGSNNQ-FIWQSRR--DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFE-STEASPLERHFYCIDI 389 (706)
T ss_dssp CCEECTTCSSE-EEEEECT--TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEE-ESSSCTTCBEEEEEET
T ss_pred CceeecCCCCE-EEEEEcc--CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEE-ecCCCCceEEEEEEEc
Confidence 789999 986 5555544 7888888775 56666666554 45666 7999999998875 44454 7778888
Q ss_pred CCccEEEEeeccccceeEEEECCCCCEEEEEeCC----CcEEEEecCCCC
Q psy8285 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASAD----ETISIWNCFPRD 457 (507)
Q Consensus 412 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~ 457 (507)
.+++ ...+. |...+.+++|+|||++|+....+ +.|++||+.+++
T Consensus 390 ~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 390 KGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 7765 34444 66779999999999988776443 569999998775
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=8.9e-25 Score=198.94 Aligned_cols=252 Identities=12% Similarity=0.091 Sum_probs=189.9
Q ss_pred EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC-ceeEEEEeec-CccEEEEEe
Q psy8285 182 ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE-ERLIQKLRTH-MHQVIAMCW 259 (507)
Q Consensus 182 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~ 259 (507)
+.++.|++||+.+++...+.. |...+.+++|+|++++|+++ + ++.|++||+.+ ++.......+ ...+.+++|
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~----~~~~v~~~~~spdg~~l~~~-~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQ----TPELFEAPNWSPDGKYLLLN-S-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEE----ESSCCEEEEECTTSSEEEEE-E-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CcceeEEEEeCCCCceeeecc----CCcceEeeEECCCCCEEEEE-c-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 468899999999988765555 67889999999999999988 4 88999999998 7776666555 367788888
Q ss_pred --eCCEEEEEec--CCeEEE--EECCCCCcCceeeecCCCceEEEEEcCCCCEEE-EEe-CCcEEEEEcCCCCCCCCeee
Q psy8285 260 --NGNLLSCGTI--GGNILH--YDVRTHSDYPTAITREGDVVCGLKWSPNGRYLA-SGS-NNTVKIWDFRQLDAKRPQVN 331 (507)
Q Consensus 260 --~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~~ 331 (507)
+++.|++++. ++...+ ++..+.. ...+..+ ..+..++|+|+++.|+ ++. ++.+++|+++... .....
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~ 167 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGT--PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS--GVETR 167 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCC--CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT--CCEEE
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCc--eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC--CcceE
Confidence 7889999883 344444 4544433 3444433 3488899999999887 454 6889999875321 34556
Q ss_pred ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC-CCCeeeeeecC-CCeEEEEECCCCCeEEEEecc--------
Q psy8285 332 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM-NGKEKCHVKTD-SQVTSILWSEQYRELVTSHGK-------- 401 (507)
Q Consensus 332 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~-------- 401 (507)
+..+...+.++.|+|+++.+++++.. ++.+++|++. .+.....+..+ ..+..++|+|++++|++++..
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSR--TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECT--TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred cccCCCccccceECCCCCEEEEEecC--CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 66688899999999999877776654 7888888875 44455555444 568899999999999884211
Q ss_pred -CCCeEEEEeCCCccE--EEEeeccccceeEEEECCCCCEEEEEeCCC
Q psy8285 402 -QDCSLKMWEYPRLHL--IEELKIHQERILSAVLSPDQTCVAAASADE 446 (507)
Q Consensus 402 -~d~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg 446 (507)
.++.|++||+.+++. +..+.+|...+..++|+|++++|++++.+.
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 125799999988765 444557888999999999999998887653
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=3.5e-23 Score=191.82 Aligned_cols=233 Identities=10% Similarity=0.102 Sum_probs=168.8
Q ss_pred eeeCCCC--EEEEE-cCCeEEEEECCCCce-eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC---cEEEEeCCCcee
Q psy8285 171 LDWGYHD--TLAVA-LDTSVYTWNTKTNKT-QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE---YIDLWHEQEERL 243 (507)
Q Consensus 171 ~~~s~~~--~~~~~-~~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg---~i~iwd~~~~~~ 243 (507)
++|+|++ +++++ .++.|++||+.+++. ...... +..+..+++|+|++++++++ ..++ .|.+||+.+++.
T Consensus 45 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~-~~~~~~~~i~v~d~~~~~~ 120 (331)
T 3u4y_A 45 TAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE---GQSSMADVDITPDDQFAVTV-TGLNHPFNMQSYSFLKNKF 120 (331)
T ss_dssp EEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE---CSSCCCCEEECTTSSEEEEC-CCSSSSCEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc---CCCCccceEECCCCCEEEEe-cCCCCcccEEEEECCCCCe
Confidence 5666665 44444 478999999998886 444443 44555559999999999955 4443 899999999998
Q ss_pred EEEEeecCccEEEEEe--eCCEEE-EEecCCe-EEEEECCCCCcCc---eeeecCCCceEEEEEcCCCCEEEEEe--CCc
Q psy8285 244 IQKLRTHMHQVIAMCW--NGNLLS-CGTIGGN-ILHYDVRTHSDYP---TAITREGDVVCGLKWSPNGRYLASGS--NNT 314 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~~~l~-~~~~dg~-i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~ 314 (507)
+..+..+ ....+++| ++++++ +...++. |.+|++....... ............++|+|+++++++++ ++.
T Consensus 121 ~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 199 (331)
T 3u4y_A 121 ISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS 199 (331)
T ss_dssp EEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred EEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe
Confidence 8877654 44588888 566454 4455578 9999998644211 12223445688999999999776665 499
Q ss_pred EEEEEcCCCCCCCC---eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe--eeeeecC--------C
Q psy8285 315 VKIWDFRQLDAKRP---QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE--KCHVKTD--------S 381 (507)
Q Consensus 315 i~i~d~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~--------~ 381 (507)
|.+||+.++ +. +..+. ....+..++|+|+++.++++..+ ++.|.+||+.+++. +..+... .
T Consensus 200 v~v~d~~~~---~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
T 3u4y_A 200 IGILETQNP---ENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTES--TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLF 273 (331)
T ss_dssp EEEEECSST---TSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSS--EEEEEEEETTTTEEEEEEEEECCCCCCCGGGT
T ss_pred EEEEECCCC---cccceeeecc-CCCCCceEEECCCCCEEEEEEcC--CCEEEEEECCCCceeeecccccccccCCCCcc
Confidence 999999887 44 55555 44677899999999877777654 88999999998876 3333221 1
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
....++|+|++++|+++ +..++.|.+||+....
T Consensus 274 ~~~~~~~spdg~~l~v~-~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 274 GANQMALNKTETKLFIS-ANISRELKVFTISGKV 306 (331)
T ss_dssp TCCCEEECTTSSEEEEE-ETTTTEEEEEETTSCE
T ss_pred cccceEECCCCCEEEEe-cCCCCcEEEEEecCCc
Confidence 23568999999999875 5667899999997644
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=2.1e-23 Score=195.14 Aligned_cols=219 Identities=11% Similarity=0.024 Sum_probs=171.3
Q ss_pred eeeCCCC--EEEEE-cCCeEEEEECCCCceeEEEecCCCCC-------CceEEEEEccCCCeEEEEe-CCCCcEEEEeCC
Q psy8285 171 LDWGYHD--TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDN-------AYISCVAWKPRTTDLAVTN-TCTEYIDLWHEQ 239 (507)
Q Consensus 171 ~~~s~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~-~~dg~i~iwd~~ 239 (507)
++|+|++ ++++. .++.|.+||..+++......... .. ..+.+++|+|+++++++++ ..++.|.+||..
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDD-RKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCC-CCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCC-CccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence 4455554 33333 57899999999998877666532 11 1278999999999888873 358899999999
Q ss_pred CceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeec----CCCceEEEEEcCCCCEEEEEe-C
Q psy8285 240 EERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITR----EGDVVCGLKWSPNGRYLASGS-N 312 (507)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~-d 312 (507)
+++.+..+..+...+..+.| +++.+++++.++.|.+||+.+++. ...+.. +...+..++|+|+++++++++ +
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI-LSRKKLLDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence 99998888755555677777 788999999999999999998763 333332 455678899999999887776 4
Q ss_pred -CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCC
Q psy8285 313 -NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQ 391 (507)
Q Consensus 313 -~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~ 391 (507)
+.|.+||+.++ +.+..+.... ...++|+|+++.++++... ++.|.+||..+++.+..+.....+..++|+|+
T Consensus 252 ~~~v~~~d~~~~---~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d 324 (353)
T 3vgz_A 252 AAEVLVVDTRNG---NILAKVAAPE--SLAVLFNPARNEAYVTHRQ--AGKVSVIDAKSYKVVKTFDTPTHPNSLALSAD 324 (353)
T ss_dssp SSEEEEEETTTC---CEEEEEECSS--CCCEEEETTTTEEEEEETT--TTEEEEEETTTTEEEEEEECCSEEEEEEECTT
T ss_pred CCEEEEEECCCC---cEEEEEEcCC--CceEEECCCCCEEEEEECC--CCeEEEEECCCCeEEEEEecCCCCCeEEEcCC
Confidence 99999999887 5555554333 2579999999888887754 89999999999999888888788999999999
Q ss_pred CCeEEEE
Q psy8285 392 YRELVTS 398 (507)
Q Consensus 392 ~~~l~~~ 398 (507)
|++|+++
T Consensus 325 g~~l~v~ 331 (353)
T 3vgz_A 325 GKTLYVS 331 (353)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 9988874
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.5e-23 Score=195.21 Aligned_cols=260 Identities=10% Similarity=0.085 Sum_probs=178.2
Q ss_pred eeeeCCCC--EEEEEcC-CeEEEEECC--CCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC---Cc
Q psy8285 170 GLDWGYHD--TLAVALD-TSVYTWNTK--TNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ---EE 241 (507)
Q Consensus 170 ~~~~s~~~--~~~~~~~-~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~---~~ 241 (507)
.++|+|++ +++++.+ +.|.+|++. +++......+.. + ..+..++|+|++++|++++..++.|.+||+. ..
T Consensus 42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 119 (343)
T 1ri6_A 42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-P-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV 119 (343)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-S-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE
T ss_pred eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-C-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc
Confidence 47778876 4555554 899999997 666555544442 3 3789999999999888774568999999994 33
Q ss_pred eeEEEEeecCccEEEEEe--eCCEEEEEe-cCCeEEEEECCCCCcCce----eee-cCCCceEEEEEcCCCCEEEEEe--
Q psy8285 242 RLIQKLRTHMHQVIAMCW--NGNLLSCGT-IGGNILHYDVRTHSDYPT----AIT-REGDVVCGLKWSPNGRYLASGS-- 311 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~~~~----~~~-~~~~~v~~~~~~~~~~~l~~~~-- 311 (507)
+....+..+ ..+.+++| +++.+++++ .++.|.+||+.+...... ... .....+..++|+|+++++++++
T Consensus 120 ~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~ 198 (343)
T 1ri6_A 120 GVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 198 (343)
T ss_dssp EEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred cccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC
Confidence 444444433 45777888 677777777 899999999987221211 122 2345788999999999876665
Q ss_pred CCcEEEEEcCCCCC-CCCeeeec---C---CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC--CC--CeeeeeecC
Q psy8285 312 NNTVKIWDFRQLDA-KRPQVNNQ---C---HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM--NG--KEKCHVKTD 380 (507)
Q Consensus 312 d~~i~i~d~~~~~~-~~~~~~~~---~---~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~--~~~~~~~~~ 380 (507)
++.|.+||++.... ........ . ....+..++|+|+++.++++... ++.|.+||+. ++ +.+..+...
T Consensus 199 ~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~ 276 (343)
T 1ri6_A 199 NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT--ASLITVFSVSEDGSVLSKEGFQPTE 276 (343)
T ss_dssp TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTSCCEEEEEEEECS
T ss_pred CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC--CCEEEEEEEcCCCCceEEeeeecCC
Confidence 49999999964211 11122221 1 12356789999999888877754 8999999998 33 344455555
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeC--CCcc--EEEEeeccccceeEEEECCCC
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEY--PRLH--LIEELKIHQERILSAVLSPDQ 436 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~--~~~~--~~~~~~~~~~~i~~~~~s~~~ 436 (507)
..+..++|+|++++|+++ +..++.|.+|++ .+++ .+..+... ....+++|.++.
T Consensus 277 ~~~~~~~~s~dg~~l~~~-~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~ 334 (343)
T 1ri6_A 277 TQPRGFNVDHSGKYLIAA-GQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHE 334 (343)
T ss_dssp SSCCCEEECTTSSEEEEE-CTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred CccceEEECCCCCEEEEe-cCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEccc
Confidence 568899999999998884 446899999954 4553 34444432 345567776654
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=7.9e-24 Score=196.63 Aligned_cols=271 Identities=13% Similarity=0.057 Sum_probs=205.7
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCC-ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee-c----C
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA-YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT-H----M 251 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~-~----~ 251 (507)
+++++.++.|++||+.+++........ +.. .+..++|+|+++++++++..++.|.+||+.+++.+..+.. + .
T Consensus 4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 567789999999999999887766643 221 4789999999988776647789999999999988877653 2 1
Q ss_pred ccEEEEEe--eCCEEEEEe------------cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEE
Q psy8285 252 HQVIAMCW--NGNLLSCGT------------IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKI 317 (507)
Q Consensus 252 ~~v~~~~~--~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i 317 (507)
..+..++| +++.++++. .++.|.+||+.+.+ ....+. ....+.+++|+|++++++++ ++.|++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~-~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFE-APRQITMLAWARDGSKLYGL-GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEE-CCSSCCCEEECTTSSCEEEE-SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc-EEEEEe-CCCCcceeEECCCCCEEEEe-CCeEEE
Confidence 24566777 688888886 57999999998765 333333 24567889999999988887 689999
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC-----------------------eEEEEeCCCCCee
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ-----------------------TVRLWNSMNGKEK 374 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~-----------------------~i~i~d~~~~~~~ 374 (507)
||+.++ +....+..+.. ...+.|+|++..+++++.. ++ .|.+||+.+++..
T Consensus 159 ~d~~~~---~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 159 MDPEAG---TLVEDKPIQSW-EAETYAQPDVLAVWNQHES--SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp EETTTT---EEEEEECSTTT-TTTTBCCCBCCCCCCCCTT--TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred EECCCC---cEeeeeecccc-CCCceeCCCccEEeeeccC--CCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 999886 45444443321 1133789998777665432 33 4789999998875
Q ss_pred e-eeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 375 C-HVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 375 ~-~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
. .+.. ...+.+++|+|+++++++ + ++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.++.|++||
T Consensus 233 ~~~~~~~~~~~~~~~~s~dg~~l~~--~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 233 MREVRIMDVFYFSTAVNPAKTRAFG--A--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEE--E--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred EeecCCCCCceeeEEECCCCCEEEE--e--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 2 1222 246889999999999998 4 789999999999888877643 4678999999999999999999999999
Q ss_pred cCCCCcccceee
Q psy8285 453 CFPRDKKRKARQ 464 (507)
Q Consensus 453 ~~~~~~~~~~~~ 464 (507)
+.+++....++.
T Consensus 308 ~~~~~~~~~~~~ 319 (337)
T 1pby_B 308 AETLEKKGQVDL 319 (337)
T ss_dssp TTTCCEEEEEEC
T ss_pred CcCCcEEEEEEc
Confidence 999887766543
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1e-24 Score=224.31 Aligned_cols=302 Identities=12% Similarity=0.095 Sum_probs=210.3
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCC---ceEEEEEccCCCeEEEEeCCC---------CcEE
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA---YISCVAWKPRTTDLAVTNTCT---------EYID 234 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~~d---------g~i~ 234 (507)
...++|+||+ +++.+.|+.|++||+.+++...+... +.. .|.+++|+|||++|+++ +.+ +.+.
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~---~~~~~~~v~~~~~SpDg~~l~~~-~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEG---KKIESLRAIRYEISPDREYALFS-YNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECT---TTTTTTTCSEEEECTTSSEEEEE-ESCCCCSSSCCCSEEE
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEecc---ccccccccceEEECCCCCEEEEE-ecCccceeecceeeEE
Confidence 4568999998 56567899999999999987666553 333 49999999999999988 543 7899
Q ss_pred EEeCCCceeEEEEe---ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCc---------------
Q psy8285 235 LWHEQEERLIQKLR---THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDV--------------- 294 (507)
Q Consensus 235 iwd~~~~~~~~~~~---~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------------- 294 (507)
+||+.+++. ..+. .|...+..++| ||+.|++++. +.|++||+.+++ .......+...
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-eEEEecCCCCCceECcccceeEEEEe
Confidence 999998876 3333 34444777888 7999999885 799999998865 33333333322
Q ss_pred ---eEEEEEcCCCCEEEEEe-CC----------------------------------cEEEEEcCCCCCCCCeeeecCC-
Q psy8285 295 ---VCGLKWSPNGRYLASGS-NN----------------------------------TVKIWDFRQLDAKRPQVNNQCH- 335 (507)
Q Consensus 295 ---v~~~~~~~~~~~l~~~~-d~----------------------------------~i~i~d~~~~~~~~~~~~~~~~- 335 (507)
+.+++|+|||+.|++++ ++ .|++||+.++ +....+..+
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~---~~~~~l~~~~ 248 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP---THDLEMMPPD 248 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS---CCCEECCCCC
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC---ceeEEeeCCc
Confidence 37899999999999887 32 7899999876 333444433
Q ss_pred -----CCCeeEEEEccCCCcEEEEEc-cCCCCeEEEEeCCCCCeeeeeecC--CCe----EEEEECCCCCeEEEEeccCC
Q psy8285 336 -----LSAVKAIAWCPWEPTLLATGG-GICDQTVRLWNSMNGKEKCHVKTD--SQV----TSILWSEQYRELVTSHGKQD 403 (507)
Q Consensus 336 -----~~~v~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~--~~i----~~~~~s~~~~~l~~~~g~~d 403 (507)
...+..++|+|||+.+++... +..+..|++||+.+++....+..+ ..+ ..++|+|||+.|+..+...+
T Consensus 249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 328 (723)
T 1xfd_A 249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (723)
T ss_dssp CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence 567899999999965544432 112468999999999876655432 333 37899999999887423456
Q ss_pred C------eEEEEe-CCCcc--EEEEeeccccceeE-EEECCCCCEEEEEeCC---CcEEEEecCCCCc--cccee----e
Q psy8285 404 C------SLKMWE-YPRLH--LIEELKIHQERILS-AVLSPDQTCVAAASAD---ETISIWNCFPRDK--KRKAR----Q 464 (507)
Q Consensus 404 ~------~i~v~d-~~~~~--~~~~~~~~~~~i~~-~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~--~~~~~----~ 464 (507)
+ .|++|| ..+++ +...+..+...+.. ++|+|||+.|+..+.+ +.+++|++..... ...+. .
T Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 408 (723)
T 1xfd_A 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE 408 (723)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS
T ss_pred CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccC
Confidence 6 577788 34444 14455544444554 6999999999766655 7899999875432 22222 1
Q ss_pred cCCCcceEEeeccCc
Q psy8285 465 VGSGSSLEFAILKQP 479 (507)
Q Consensus 465 ~~~~~~~~~~~~~~~ 479 (507)
......+.|+++...
T Consensus 409 ~~~~~~~~~spdg~~ 423 (723)
T 1xfd_A 409 NCTYFSASFSHSMDF 423 (723)
T ss_dssp SCCCCEEEECTTSSE
T ss_pred CCCeEEEEECCCCCE
Confidence 233456677776543
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=1e-23 Score=216.23 Aligned_cols=273 Identities=11% Similarity=0.109 Sum_probs=187.9
Q ss_pred eeeeCCCC-EEEEEcCCeEEEEECCC-----CceeEEEecCCCCCCc--------------eEEEEEccCCCeEEEEeC-
Q psy8285 170 GLDWGYHD-TLAVALDTSVYTWNTKT-----NKTQLLVEYPTYDNAY--------------ISCVAWKPRTTDLAVTNT- 228 (507)
Q Consensus 170 ~~~~s~~~-~~~~~~~~~i~iw~~~~-----~~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~~- 228 (507)
.++||||+ .++.+.++.|++|++.+ ++...+... +... +.++.|+|||++|+++ +
T Consensus 125 ~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~---~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~-~~ 200 (706)
T 2z3z_A 125 SLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTID---GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY-RM 200 (706)
T ss_dssp TCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSC---CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE-EE
T ss_pred CCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccC---CCCCeEcccchhhhhcCCCceEEECCCCCEEEEE-EE
Confidence 36778887 66667889999999988 766544332 2222 5899999999999998 5
Q ss_pred --------------------------------CCCcEEEEeCCCceeEEEEe--ecCccEEEEEe--eCCEEEEEecCC-
Q psy8285 229 --------------------------------CTEYIDLWHEQEERLIQKLR--THMHQVIAMCW--NGNLLSCGTIGG- 271 (507)
Q Consensus 229 --------------------------------~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~~~~~dg- 271 (507)
.+..|++||+.+++...... .|...+..++| |++.|++++.++
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 44689999999887655443 46677899999 788899887775
Q ss_pred ----eEEEEECCCCCcCceeee-cCCC---ceEEEEEcC--CCCEEEEEe-CCcEEEEEcC-CCCCCCCeeeecCCCCCe
Q psy8285 272 ----NILHYDVRTHSDYPTAIT-REGD---VVCGLKWSP--NGRYLASGS-NNTVKIWDFR-QLDAKRPQVNNQCHLSAV 339 (507)
Q Consensus 272 ----~i~i~d~~~~~~~~~~~~-~~~~---~v~~~~~~~--~~~~l~~~~-d~~i~i~d~~-~~~~~~~~~~~~~~~~~v 339 (507)
.|++||+.+++....... .+.. .+.+++|+| ||+++++++ ++.+++|++. .+ ..+..+..+...+
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v 357 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEV 357 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCE
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEE
Confidence 899999998732222221 2222 246789999 999888887 5888898876 33 5566677777778
Q ss_pred eE-EEEccCCCcEEEEEccCCCC----eEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCC--CeEEEEeCC
Q psy8285 340 KA-IAWCPWEPTLLATGGGICDQ----TVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQD--CSLKMWEYP 412 (507)
Q Consensus 340 ~~-~~~~~~~~~~~~~~~~~~d~----~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d--~~i~v~d~~ 412 (507)
.. ++|+|+++.+++++.. ++ .|..||+.+++ ...+.....+.+++|+|+|++++....+.+ +.|++||+.
T Consensus 358 ~~~~~~spdg~~l~~~~~~--~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 358 TNFAGFDPKGTRLYFESTE--ASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EEEEEECTTSSEEEEEESS--SCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred EeeeEEcCCCCEEEEEecC--CCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 76 8999999888887764 44 78888887776 444555567899999999999987522222 579999998
Q ss_pred CccEEEEeeccccceeEEEECCCCCEEEEEeCCC--cEEEEecCC
Q psy8285 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADE--TISIWNCFP 455 (507)
Q Consensus 413 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg--~i~iw~~~~ 455 (507)
+++ ...+ .+...+....+.+.. .+..-+.|| .+..|-..+
T Consensus 435 ~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~P 476 (706)
T 2z3z_A 435 KGS-HTLL-EAKNPDTGYAMPEIR-TGTIMAADGQTPLYYKLTMP 476 (706)
T ss_dssp SCE-EEEE-ECC------CCCCEE-EEEEECTTSSSEEEEEEECC
T ss_pred CCe-Eeec-cccchhhhcCCCCcE-EEEEEcCCCCEEEEEEEEeC
Confidence 877 3333 344445444443332 333334455 566665543
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=2.1e-22 Score=187.92 Aligned_cols=265 Identities=11% Similarity=0.096 Sum_probs=182.5
Q ss_pred CCeEEEEEC--CCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC--CCCcEEEEeCCCce--eEEEEeecCccEEEE
Q psy8285 184 DTSVYTWNT--KTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT--CTEYIDLWHEQEER--LIQKLRTHMHQVIAM 257 (507)
Q Consensus 184 ~~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~ 257 (507)
++.|++|++ .+++...+.... +...+..++|+|+|+ |++++. .++.|.+|++.+++ .+..+..+...+..+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~--~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLA--ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEE--ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeee--ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 456666655 456654433332 456678899999998 666522 26899999997765 344445567777788
Q ss_pred Ee--eCCEEEEEe-cCCeEEEEECCCCCcC--ceeeec---------CCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q psy8285 258 CW--NGNLLSCGT-IGGNILHYDVRTHSDY--PTAITR---------EGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 258 ~~--~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 322 (507)
+| ++++|++++ .++.|.+|++...... ...... ....+.+++|+|+|+++++.. ++.|.+|++..
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 88 688888887 6799999999643211 111111 123488999999999554444 48999999983
Q ss_pred CCCCCCeeeecC-CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC--CCe--eeeeecC-------CCeEEEEECC
Q psy8285 323 LDAKRPQVNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN--GKE--KCHVKTD-------SQVTSILWSE 390 (507)
Q Consensus 323 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~--~~~~~~~-------~~i~~~~~s~ 390 (507)
............ ....+..++|+|+|+.++++... ++.+.+|++.. ++. +..+... ..+..++|+|
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~--~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL--SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT--TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC--CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 211111222222 23367889999999878877665 89999999874 442 2222211 3488899999
Q ss_pred CCCeEEEEeccCCCeEEEEeCC---CccEEEEeeccccceeEEEECCCCCEEEEEeCC-CcEEEEecC
Q psy8285 391 QYRELVTSHGKQDCSLKMWEYP---RLHLIEELKIHQERILSAVLSPDQTCVAAASAD-ETISIWNCF 454 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-g~i~iw~~~ 454 (507)
+|++|+++ ...++.|.+|++. ..+.+..+..+...+..++|+|||++|++++.+ +.|.+|++.
T Consensus 250 dG~~l~v~-~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 250 DGHFLYVS-NRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TSCEEEEE-EETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEE-eCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 99998764 4568999999997 335566666666678999999999998888764 899999664
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=5.8e-21 Score=179.10 Aligned_cols=264 Identities=12% Similarity=0.099 Sum_probs=185.0
Q ss_pred cCCeEEEEEC--CCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC----CcEEEEeCCC--cee--EEEEeecCc
Q psy8285 183 LDTSVYTWNT--KTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT----EYIDLWHEQE--ERL--IQKLRTHMH 252 (507)
Q Consensus 183 ~~~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d----g~i~iwd~~~--~~~--~~~~~~~~~ 252 (507)
.++.|++|.+ .+++....... +...+..++|+|++++|+++ +.+ +.|.+|++.. ++. +.....+..
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~-~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~ 100 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDA---EVANPSYLIPSADGKFVYSV-NEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA 100 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEEECTTSSEEEEE-ECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred CCCCEEEEEEeCCCCCEEEeecc---cCCCCceEEECCCCCEEEEE-EccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC
Confidence 3568888865 55666555444 34567889999999999988 554 8999998865 433 333444556
Q ss_pred cEEEEEeeCCEEEEEe-cCCeEEEEECCCCCcCce---eee----------cCCCceEEEEEcCCCCEEEEEe--CCcEE
Q psy8285 253 QVIAMCWNGNLLSCGT-IGGNILHYDVRTHSDYPT---AIT----------REGDVVCGLKWSPNGRYLASGS--NNTVK 316 (507)
Q Consensus 253 ~v~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~---~~~----------~~~~~v~~~~~~~~~~~l~~~~--d~~i~ 316 (507)
....++++++.|++++ .++.|.+|++........ ... .+...+.+++|+|+|+++++++ ++.|.
T Consensus 101 ~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 101 DPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH 180 (361)
T ss_dssp CEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence 6777888888777776 578999999975432111 111 1123458899999999877766 48999
Q ss_pred EEEcCCCCC------CCC----eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe--eeeeecC----
Q psy8285 317 IWDFRQLDA------KRP----QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE--KCHVKTD---- 380 (507)
Q Consensus 317 i~d~~~~~~------~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~---- 380 (507)
+|++..... ... ......+...+..++|+|+++.++++... ++.|.+||+.+++. +..+...
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--~~~v~v~~~~~g~~~~~~~~~~~~~~~ 258 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI--GGTVIAFRYADGMLDEIQTVAADTVNA 258 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT--TCEEEEEEEETTEEEEEEEEESCSSCC
T ss_pred EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC--CCeEEEEEecCCceEEeEEEecCCCCC
Confidence 999986521 100 11122345567899999999877777654 89999999987754 2222221
Q ss_pred CCeEEEEECCCCCeEEEEeccC-CCeEEEEeCC--Ccc--EEEEeeccccceeEEEECCCCCEEEEEe-CCCcEEEEecC
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQ-DCSLKMWEYP--RLH--LIEELKIHQERILSAVLSPDQTCVAAAS-ADETISIWNCF 454 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~-d~~i~v~d~~--~~~--~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~dg~i~iw~~~ 454 (507)
.....++|+|||++|+++ ... ++.|.+|++. +++ .+..+.. ...+..++|+|||++|++++ .++.|.+|++.
T Consensus 259 ~~~~~i~~spdg~~l~v~-~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 259 QGSGDIHLSPDGKYLYAS-NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CCEEEEEECTTSSEEEEE-ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCcccEEECCCCCEEEEE-CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 347899999999999774 344 5899999985 344 4444544 45678999999999988887 67899997665
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=6.4e-23 Score=210.63 Aligned_cols=279 Identities=10% Similarity=0.080 Sum_probs=187.8
Q ss_pred eeeeCCCC-EEEE-Ec---------CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 170 GLDWGYHD-TLAV-AL---------DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 170 ~~~~s~~~-~~~~-~~---------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
+++||||+ .++. +. ++.|++||+.+++......+ ...+..++|+|||+.|+++ .++.|++||+
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l----~~~~~~~~~SPDG~~la~~--~~~~i~~~~~ 137 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL----PRPIQYLCWSPVGSKLAYV--YQNNIYLKQR 137 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC----CSSBCCEEECSSTTCEEEE--ETTEEEEESS
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec----CcccccceECCCCCEEEEE--ECCeEEEEeC
Confidence 47777777 3433 33 58999999998876211222 2458899999999999988 4789999999
Q ss_pred CCceeEEEE-eecCccE-----------------EEEEe--eCCEEEEEecCC---------------------------
Q psy8285 239 QEERLIQKL-RTHMHQV-----------------IAMCW--NGNLLSCGTIGG--------------------------- 271 (507)
Q Consensus 239 ~~~~~~~~~-~~~~~~v-----------------~~~~~--~~~~l~~~~~dg--------------------------- 271 (507)
.+++..... .++...+ .+++| ||+.|++++.|.
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~ 217 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA 217 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence 888765433 2232222 37888 799999987652
Q ss_pred -------eEEEEECCCCCcC----c---eeeecCCCceEEEEEcCCCCEEEEEeC-----CcEEEEE----cCCCCCCCC
Q psy8285 272 -------NILHYDVRTHSDY----P---TAITREGDVVCGLKWSPNGRYLASGSN-----NTVKIWD----FRQLDAKRP 328 (507)
Q Consensus 272 -------~i~i~d~~~~~~~----~---~~~~~~~~~v~~~~~~~~~~~l~~~~d-----~~i~i~d----~~~~~~~~~ 328 (507)
.|++||+.+++.. . ..+..|...+..++|+||++++++..+ ..|.+|| ..++ +.
T Consensus 218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g---~~ 294 (719)
T 1z68_A 218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW---DC 294 (719)
T ss_dssp TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE---EC
T ss_pred CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC---ce
Confidence 7889999876421 0 123357778999999999887777542 2488899 6665 33
Q ss_pred eeee----cCCCCCee-----EEEEccCCCcEEEE-EccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEE
Q psy8285 329 QVNN----QCHLSAVK-----AIAWCPWEPTLLAT-GGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTS 398 (507)
Q Consensus 329 ~~~~----~~~~~~v~-----~~~~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 398 (507)
.... ..|...+. .+.|+|+|+.++.. ........|.+||+.+++..........+..+.++ +++.|+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~ 373 (719)
T 1z68_A 295 PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYS 373 (719)
T ss_dssp CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEE
T ss_pred EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEE
Confidence 3333 35666666 88999999877653 33212347888898777743332333567777777 88888774
Q ss_pred eccC----CCeEEEEeCCC--cc-EEEEee----ccccceeEEEECCCCCEEEE-EeCC--CcEEEEecCCCCcc
Q psy8285 399 HGKQ----DCSLKMWEYPR--LH-LIEELK----IHQERILSAVLSPDQTCVAA-ASAD--ETISIWNCFPRDKK 459 (507)
Q Consensus 399 ~g~~----d~~i~v~d~~~--~~-~~~~~~----~~~~~i~~~~~s~~~~~l~s-~~~d--g~i~iw~~~~~~~~ 459 (507)
+.. ++..++|.+.. +. ....+. +|...+..+.|+|++++++. ++.+ ..+.+|++.+++..
T Consensus 374 -~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 374 -SNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp -ESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred -EecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 333 47788887653 32 123333 25667888999999987764 3333 46889998777643
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=2.8e-22 Score=186.11 Aligned_cols=240 Identities=11% Similarity=0.026 Sum_probs=177.3
Q ss_pred eeeCCCC--EEEEE-cCCeEEEEECCCCceeEEEecCCC--CCCceEEEEEccCCCeEEEEeC------------CCCcE
Q psy8285 171 LDWGYHD--TLAVA-LDTSVYTWNTKTNKTQLLVEYPTY--DNAYISCVAWKPRTTDLAVTNT------------CTEYI 233 (507)
Q Consensus 171 ~~~s~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~------------~dg~i 233 (507)
++|+|++ +++++ .++.|.+||+.+++.......... +...+.+++|+|++++++++ . .++.|
T Consensus 39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~~~~~~~~~~~~i 117 (337)
T 1pby_B 39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIY-ESPVRLELTHFEVQPTRV 117 (337)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEE-EEEEEECSSCEEECCCEE
T ss_pred eEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEE-ecccccccccccccCceE
Confidence 6666766 33333 578999999999887766554210 01257789999999999988 4 57999
Q ss_pred EEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 234 DLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
.+||+.+++.+..+.. ...+.+++| ++++|+++ ++.|.+||+.+++ ....+..+.. ...+.|+|+++.++..+
T Consensus 118 ~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~-~~~~~~~~~~-~~~~~~s~dg~~l~~~~ 192 (337)
T 1pby_B 118 ALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT-LVEDKPIQSW-EAETYAQPDVLAVWNQH 192 (337)
T ss_dssp EEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE-EEEEECSTTT-TTTTBCCCBCCCCCCCC
T ss_pred EEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc-Eeeeeecccc-CCCceeCCCccEEeeec
Confidence 9999999888877764 345667777 67877777 6899999998875 3333332220 11237899988766554
Q ss_pred -C-C-----------------------cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEE
Q psy8285 312 -N-N-----------------------TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 366 (507)
Q Consensus 312 -d-~-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~ 366 (507)
. + .|.+||+.++... ...+..+...+.+++|+|+++.++++ ++.|.+|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~-----~~~v~~~ 265 (337)
T 1pby_B 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MREVRIMDVFYFSTAVNPAKTRAFGA-----YNVLESF 265 (337)
T ss_dssp TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEEEEECSSCEEEEEECTTSSEEEEE-----ESEEEEE
T ss_pred cCCCceeeeeeccccccccccccccccceEEEeCCCCCce--EeecCCCCCceeeEEECCCCCEEEEe-----CCeEEEE
Confidence 2 3 4689999886221 23344466678899999999776653 6899999
Q ss_pred eCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccc
Q psy8285 367 NSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE 425 (507)
Q Consensus 367 d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~ 425 (507)
|+.+++.+..+.....+.+++|+|+|++|++ ++.++.|++||+.+++.+..+..+..
T Consensus 266 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~--~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 266 DLEKNASIKRVPLPHSYYSVNVSTDGSTVWL--GGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECTTSCEEEE--ESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred ECCCCcCcceecCCCceeeEEECCCCCEEEE--EcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 9999998888877777899999999999998 56799999999999998888875543
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=5.9e-22 Score=180.20 Aligned_cols=224 Identities=13% Similarity=0.094 Sum_probs=169.7
Q ss_pred CCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCC-CCcCceeeecC-CCceEEEEEcCC
Q psy8285 228 TCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRT-HSDYPTAITRE-GDVVCGLKWSPN 303 (507)
Q Consensus 228 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~-~~~v~~~~~~~~ 303 (507)
+.++.|++||+.+++.. .+..|...+.+++| ++++|++++ ++.|++||+.+ ++ .......+ ...+.+++|+|+
T Consensus 19 ~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-PEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-CEECCCTTCCCBCSCCEECTT
T ss_pred CcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-ceEeccccccccccceEECCC
Confidence 67899999999988766 45568889999999 788898876 88999999988 65 33334344 367889999999
Q ss_pred CCEEEEEe-C--CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeC--CCCCeeeeee
Q psy8285 304 GRYLASGS-N--NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNS--MNGKEKCHVK 378 (507)
Q Consensus 304 ~~~l~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~--~~~~~~~~~~ 378 (507)
+++|+++. + +...+|.++... .....+. +...+..++|+|+++.+++++.. ++.+++|++ .+++......
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTG--GTPRLMT-KNLPSYWHGWSPDGKSFTYCGIR--DQVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTC--CCCEECC-SSSSEEEEEECTTSSEEEEEEEE--TTEEEEEEEETTTCCEEECCC
T ss_pred CCEEEEEEeCCCCcceEEEEECCC--CceEEee-cCCCccceEECCCCCEEEEEECC--CCceEEEEEECCCCcceEccc
Confidence 99999988 2 455555554321 2233443 33358899999999888766654 888888885 4455443334
Q ss_pred cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC-CccEEEEeeccccceeEEEECCCCCEEEEEeCC-----------C
Q psy8285 379 TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP-RLHLIEELKIHQERILSAVLSPDQTCVAAASAD-----------E 446 (507)
Q Consensus 379 ~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-----------g 446 (507)
....+.+++|+|++++|+++ +..++.+++|++. .+..+..+..|...+..++|+|++++|++++.+ +
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFN-SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEE-ECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred CCCccccceECCCCCEEEEE-ecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 44689999999999998874 4458889999886 556677788888889999999999999888765 5
Q ss_pred cEEEEecCCCCccc
Q psy8285 447 TISIWNCFPRDKKR 460 (507)
Q Consensus 447 ~i~iw~~~~~~~~~ 460 (507)
.|++||+.+++...
T Consensus 250 ~l~~~d~~~~~~~~ 263 (297)
T 2ojh_A 250 RVQLMDMDGGNVET 263 (297)
T ss_dssp EEEEEETTSCSCEE
T ss_pred EEEEEecCCCCcee
Confidence 69999998876543
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=2.7e-21 Score=180.46 Aligned_cols=279 Identities=9% Similarity=-0.018 Sum_probs=192.1
Q ss_pred eeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 171 LDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 171 ~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
+++++++ +++.+.++.|++||+.+++........ ....+..++|+|+++++++++..++.|.+||+.+++.+..+.
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP--DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS--SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC--CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 4556665 556678999999999999877766642 222578999999999777664778999999999998887776
Q ss_pred ecC------ccEEEEEe--eCCEEEEEecC------------CeEEEEECCCCCc--CceeeecCCCceEEEEEcCCCCE
Q psy8285 249 THM------HQVIAMCW--NGNLLSCGTIG------------GNILHYDVRTHSD--YPTAITREGDVVCGLKWSPNGRY 306 (507)
Q Consensus 249 ~~~------~~v~~~~~--~~~~l~~~~~d------------g~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~ 306 (507)
... ..+..++| ++++|++++.+ +.|.+||+.+++. ..... .+...+.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS- 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-
Confidence 432 22566777 78899888865 8999999987432 12222 2344688899999999
Q ss_pred EEEEeCCcEEEEEcCCCCCCCCeeeecCCCC------------------------CeeEEEEccCCCcEEEEEccCCCCe
Q psy8285 307 LASGSNNTVKIWDFRQLDAKRPQVNNQCHLS------------------------AVKAIAWCPWEPTLLATGGGICDQT 362 (507)
Q Consensus 307 l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~~~~~~~~~~d~~ 362 (507)
++++ ++.|++||+.++ +....+..+.. ....+++++++......... ...
T Consensus 161 l~~~-~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~ 234 (349)
T 1jmx_B 161 LYVA-GPDIYKMDVKTG---KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL--LYG 234 (349)
T ss_dssp EEEE-SSSEEEECTTTC---CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE--EEE
T ss_pred EEEc-cCcEEEEeCCCC---ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc--cee
Confidence 5544 345999999876 44444432210 23446666554222111110 112
Q ss_pred EEEEeCCCCCeee-ee-ecCCCeEEEEECC-CCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEE
Q psy8285 363 VRLWNSMNGKEKC-HV-KTDSQVTSILWSE-QYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCV 439 (507)
Q Consensus 363 i~i~d~~~~~~~~-~~-~~~~~i~~~~~s~-~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 439 (507)
+..+|..+++... .+ .....+..++|+| +++++++ + ++.|.+||+.+++.+..+.. ...+.+++|+|++++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~--~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l 309 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG--V--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKL 309 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE--E--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEE--E--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEE
Confidence 2235555544221 11 1235688999999 9999998 5 88999999999988887764 3457899999999999
Q ss_pred EEEeCCCcEEEEecCCCCcccceee
Q psy8285 440 AAASADETISIWNCFPRDKKRKARQ 464 (507)
Q Consensus 440 ~s~~~dg~i~iw~~~~~~~~~~~~~ 464 (507)
++++.++.|++||+.+.+....++.
T Consensus 310 ~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 310 YLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EEecCCCeEEEEeccccceeeeeec
Confidence 8888899999999998877665543
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=9.5e-22 Score=196.69 Aligned_cols=185 Identities=8% Similarity=0.014 Sum_probs=138.2
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC----CeEEEEECCCCCc
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG----GNILHYDVRTHSD 283 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d----g~i~i~d~~~~~~ 283 (507)
.+...+|+|+++.++.++..++.+.+||+.+++.......+. .+++| ||+.|++++.+ +.|++||+.+++
T Consensus 111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~- 186 (582)
T 3o4h_A 111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG- 186 (582)
T ss_dssp SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-
T ss_pred CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-
Confidence 345678999987544332455666699999887665554433 45555 89999988877 789999998876
Q ss_pred CceeeecCCCceEEEEEcCCCCEEEEEe-CC--cEEEEEcCCCCCCCCeeeecCCCCCeeEEE--------EccCCCcEE
Q psy8285 284 YPTAITREGDVVCGLKWSPNGRYLASGS-NN--TVKIWDFRQLDAKRPQVNNQCHLSAVKAIA--------WCPWEPTLL 352 (507)
Q Consensus 284 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~ 352 (507)
...+..+...+..++|+|||+.|+++. ++ .|++||+.++ +.. .+..|...+..+. |+||| .++
T Consensus 187 -~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~ 260 (582)
T 3o4h_A 187 -LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLA 260 (582)
T ss_dssp -CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEE
T ss_pred -ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccceeEcCCC-cEE
Confidence 456778888899999999999999666 46 8999999886 444 5666777777777 99999 777
Q ss_pred EEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCC---CeEEEEeCCC
Q psy8285 353 ATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQD---CSLKMWEYPR 413 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d---~~i~v~d~~~ 413 (507)
+++.. ++++++|++ ++.... ....+.+++|+ +++.+++. +.+ ..+++||..+
T Consensus 261 ~~~~~--~g~~~l~~~--g~~~~~--~~~~v~~~~~s-dg~~l~~~--s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 261 VVARR--EGRSAVFID--GERVEA--PQGNHGRVVLW-RGKLVTSH--TSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEE--TTEEEEEET--TEEECC--CSSEEEEEEEE-TTEEEEEE--EETTEEEEEEEETTCC
T ss_pred EEEEc--CCcEEEEEE--CCeecc--CCCceEEEEec-CCEEEEEE--cCCCCCCeEEEEcCCC
Confidence 77765 999999999 665442 22568899999 88888773 344 3577777654
No 154
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=7.1e-21 Score=180.44 Aligned_cols=278 Identities=11% Similarity=0.006 Sum_probs=191.7
Q ss_pred ceeeeeeCCCC--EEEEEc-CC--eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 167 YTSGLDWGYHD--TLAVAL-DT--SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~-~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
++...+||||+ ++.++. ++ .|++||+.+++..++... +...+..+.|+|+++.|+.+ +.++.|++||+.++
T Consensus 37 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~---~~~~~~~~~~spdg~~l~~~-~~~~~l~~~d~~~g 112 (388)
T 3pe7_A 37 YFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG---RGDNTFGGFLSPDDDALFYV-KDGRNLMRVDLATL 112 (388)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS---SCBCSSSCEECTTSSEEEEE-ETTTEEEEEETTTC
T ss_pred hhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC---CCCCccceEEcCCCCEEEEE-eCCCeEEEEECCCC
Confidence 34457899998 444554 55 599999998887665543 44455567899999999999 78889999999999
Q ss_pred eeEEEEeecCccEEEEEe----eCCEEEEEe----------------------cCCeEEEEECCCCCcCceeeecCCCce
Q psy8285 242 RLIQKLRTHMHQVIAMCW----NGNLLSCGT----------------------IGGNILHYDVRTHSDYPTAITREGDVV 295 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~----~~~~l~~~~----------------------~dg~i~i~d~~~~~~~~~~~~~~~~~v 295 (507)
+.......+...+....| +++.++... .+..|.+||+.+++ ...+..+...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~ 190 (388)
T 3pe7_A 113 EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWL 190 (388)
T ss_dssp CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCE
T ss_pred cceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccc
Confidence 877766666655544443 677776432 34679999999875 44555566778
Q ss_pred EEEEEcC-CCCEEEEEeC-C------cEEEEEcCCCCCCCCeeeecCCC--CCeeEEEEccCCCcEEEEEccCCC--CeE
Q psy8285 296 CGLKWSP-NGRYLASGSN-N------TVKIWDFRQLDAKRPQVNNQCHL--SAVKAIAWCPWEPTLLATGGGICD--QTV 363 (507)
Q Consensus 296 ~~~~~~~-~~~~l~~~~d-~------~i~i~d~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~d--~~i 363 (507)
..++|+| ||+.|+...+ + .|.++|.... ....+..+. ..+..+.|+|||+.++..+..... ..|
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (388)
T 3pe7_A 191 GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT----NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFI 266 (388)
T ss_dssp EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC----CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEE
T ss_pred cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC----ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceE
Confidence 9999999 9999887763 2 6778887654 333333333 357889999999888665542111 249
Q ss_pred EEEeCCCCCeeeeeecCC--C----eEEEEECCCCCeEEEEe-------ccCCCeEEEEeCCCccEEEEeecccc-----
Q psy8285 364 RLWNSMNGKEKCHVKTDS--Q----VTSILWSEQYRELVTSH-------GKQDCSLKMWEYPRLHLIEELKIHQE----- 425 (507)
Q Consensus 364 ~i~d~~~~~~~~~~~~~~--~----i~~~~~s~~~~~l~~~~-------g~~d~~i~v~d~~~~~~~~~~~~~~~----- 425 (507)
++||+.+++......... . ...+.|+|||+.|+... ...+..|++||+.+++. ..+..+..
T Consensus 267 ~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~ 345 (388)
T 3pe7_A 267 YSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVF 345 (388)
T ss_dssp EEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCB
T ss_pred EEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCccccc
Confidence 999999987543322221 0 11237999999988631 14466899999988765 44555555
Q ss_pred ------ceeEEEECCCCCEEEEEe-CCCcEEEEecCC
Q psy8285 426 ------RILSAVLSPDQTCVAAAS-ADETISIWNCFP 455 (507)
Q Consensus 426 ------~i~~~~~s~~~~~l~s~~-~dg~i~iw~~~~ 455 (507)
.+..++|+|||+.|+..+ .+|...+|.+.-
T Consensus 346 ~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 346 EGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 578899999999887665 467777776543
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=3.1e-20 Score=173.13 Aligned_cols=245 Identities=11% Similarity=0.079 Sum_probs=169.9
Q ss_pred eeeeeCCCC-EEEEEc---CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC-c--
Q psy8285 169 SGLDWGYHD-TLAVAL---DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE-E-- 241 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~-~-- 241 (507)
..++|+|++ +++++. ++.|++|++.+++...+..... +...+..++|+|++++|++++..++.|.+|++.. +
T Consensus 43 ~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 43 TYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE-ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred ceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeec-CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 359999998 666654 5899999998777655544333 5667889999999999998845789999999963 2
Q ss_pred eeEEEEeec---------CccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCce--eee-cCCCceEEEEEcCCCCEE
Q psy8285 242 RLIQKLRTH---------MHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPT--AIT-REGDVVCGLKWSPNGRYL 307 (507)
Q Consensus 242 ~~~~~~~~~---------~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l 307 (507)
+.+..+... ...+.+++| +++++++...++.|.+|++........ ... ........++|+|||+++
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l 201 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA 201 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE
Confidence 333333221 124778888 677666666788999999983221111 112 223467889999999987
Q ss_pred EEEe--CCcEEEEEcCCCC-CCCCeeeecCCC------CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC---Ceee
Q psy8285 308 ASGS--NNTVKIWDFRQLD-AKRPQVNNQCHL------SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG---KEKC 375 (507)
Q Consensus 308 ~~~~--d~~i~i~d~~~~~-~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~ 375 (507)
++++ ++.|.+|++.... ............ ..+..++|+|+|++++++... ++.|.+|++... +.+.
T Consensus 202 ~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~--~~~v~v~~~~~~g~~~~~~ 279 (347)
T 3hfq_A 202 FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG--YNTLAVFAVTADGHLTLIQ 279 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET--TTEEEEEEECGGGCEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC--CCEEEEEEECCCCcEEEeE
Confidence 7765 4899999987521 111122222222 458899999999888777665 899999998732 3444
Q ss_pred eeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEE--eCCCccEE
Q psy8285 376 HVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMW--EYPRLHLI 417 (507)
Q Consensus 376 ~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~--d~~~~~~~ 417 (507)
.+..+ ..+..++|+|+|++|+++ +..++.|.+| |..+++..
T Consensus 280 ~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 280 QISTEGDFPRDFDLDPTEAFVVVV-NQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEECSSSCCCEEEECTTSSEEEEE-ETTTTEEEEEEECTTTCCEE
T ss_pred EEecCCCCcCeEEECCCCCEEEEE-EcCCCcEEEEEEeCCCCeEE
Confidence 45443 458899999999999885 4456899999 55556544
No 156
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.88 E-value=4.8e-20 Score=189.24 Aligned_cols=281 Identities=10% Similarity=0.060 Sum_probs=182.0
Q ss_pred eeeCCCC-EEEEE-cC---------CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC
Q psy8285 171 LDWGYHD-TLAVA-LD---------TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ 239 (507)
Q Consensus 171 ~~~s~~~-~~~~~-~~---------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~ 239 (507)
++||||+ .++.+ .+ +.+++||+.+++...+ .. +...+..++|||||+.||.+ .++.|++|++.
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l---~~-~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~ 140 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE---ER-IPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEP 140 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS---SC-CCTTEEEEEECSSTTCEEEE--ETTEEEEESST
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc---cc-CCCcceeeEECCCCCEEEEE--ECCeEEEEECC
Confidence 6678887 44433 32 6788999999886543 33 67789999999999999988 57899999998
Q ss_pred CceeEEEEe-ecCccE-----------------EEEEe--eCCEEEEEecCC----------------------------
Q psy8285 240 EERLIQKLR-THMHQV-----------------IAMCW--NGNLLSCGTIGG---------------------------- 271 (507)
Q Consensus 240 ~~~~~~~~~-~~~~~v-----------------~~~~~--~~~~l~~~~~dg---------------------------- 271 (507)
+++..+... ++...+ ..+.| ||+.|+.++.|.
T Consensus 141 ~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~ 220 (740)
T 4a5s_A 141 NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK 220 (740)
T ss_dssp TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred CCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence 877554322 222222 23667 899888875321
Q ss_pred --------eEEEEECCC---CCc-Cceeee------cCCCceEEEEEcCCCCEEEEEeC-----CcEEEEEcCCCCC---
Q psy8285 272 --------NILHYDVRT---HSD-YPTAIT------REGDVVCGLKWSPNGRYLASGSN-----NTVKIWDFRQLDA--- 325 (507)
Q Consensus 272 --------~i~i~d~~~---~~~-~~~~~~------~~~~~v~~~~~~~~~~~l~~~~d-----~~i~i~d~~~~~~--- 325 (507)
.|++||+.+ ++. ....+. ++...+..++|+|||+.++...+ ..|++||+.++..
T Consensus 221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~ 300 (740)
T 4a5s_A 221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN 300 (740)
T ss_dssp TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc
Confidence 478899987 531 122232 36778999999999997766541 4799999988730
Q ss_pred CCCeeee--cCCCCCee-----EEEEccCCCcEE-EEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 326 KRPQVNN--QCHLSAVK-----AIAWCPWEPTLL-ATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 326 ~~~~~~~--~~~~~~v~-----~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
......+ ..+...+. .+.|+|||+.++ ..+.......|++||+.+++......+...+..+.. ++++.|+.
T Consensus 301 ~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f 379 (740)
T 4a5s_A 301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYY 379 (740)
T ss_dssp ECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEE
T ss_pred eeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEE
Confidence 0012222 34555544 789999998776 444332235789999988776655555556666543 44777666
Q ss_pred EeccC----CC--eEEEEeCCCccEEEEeec----cccceeEEEECCCCCEEEEEeCC---CcEEEEecCCCCcc
Q psy8285 398 SHGKQ----DC--SLKMWEYPRLHLIEELKI----HQERILSAVLSPDQTCVAAASAD---ETISIWNCFPRDKK 459 (507)
Q Consensus 398 ~~g~~----d~--~i~v~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~~ 459 (507)
. +.. .+ .|+..++..+.....+.. ....+..+.|+|++++++..... ..+.+++..+++..
T Consensus 380 ~-~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~ 453 (740)
T 4a5s_A 380 I-SNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGL 453 (740)
T ss_dssp E-ESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred E-EecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 4 333 23 455556555444334432 23568899999999987654433 46788887765443
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=1.6e-21 Score=200.34 Aligned_cols=272 Identities=12% Similarity=0.118 Sum_probs=194.0
Q ss_pred eeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCC---ceEEEEEccCCCeEEEEeCC---------CCcEEEE
Q psy8285 170 GLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA---YISCVAWKPRTTDLAVTNTC---------TEYIDLW 236 (507)
Q Consensus 170 ~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~~---------dg~i~iw 236 (507)
.++|+|++ +++.+.++.|++||+.+++...+... +.. .+.+++|||||++|+++ +. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~SpDg~~la~~-~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSN---RTMKSVNASNYGLSPDRQFVYLE-SDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECH---HHHHTTTCSEEEECTTSSEEEEE-EEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcc---ccccccceeeEEECCCCCeEEEE-ecCceeEEeecceEEEEE
Confidence 58999998 66666899999999999987766653 222 38999999999999988 44 6899999
Q ss_pred eCCCceeE--EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCce-----------------
Q psy8285 237 HEQEERLI--QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV----------------- 295 (507)
Q Consensus 237 d~~~~~~~--~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v----------------- 295 (507)
|+.+++.+ ..+ ...+..++| ||+.|+++. ++.|++|++.+++.......++...+
T Consensus 96 d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 96 DLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp ETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred ECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 99998762 122 245777888 899998886 78999999987652211112222222
Q ss_pred EEEEEcCCCCEEEEEe-C-C---------------------------------cEEEEEcCCCCCCCCe--------eee
Q psy8285 296 CGLKWSPNGRYLASGS-N-N---------------------------------TVKIWDFRQLDAKRPQ--------VNN 332 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~-d-~---------------------------------~i~i~d~~~~~~~~~~--------~~~ 332 (507)
.+++|+|||+.|++++ | + .|++||+.++ +.. ..+
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~---~~~~~~~~~~~~~~ 248 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP---AYVGPQEVPVPAMI 248 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH---HHHCCEECCCCHHH
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC---CccceeEccCCccC
Confidence 4799999999999887 4 2 7889999875 221 223
Q ss_pred cCCCCCeeEEEEccCCCcEEEEEccCCC--CeEEEEe----CCCCCeeeeee----cC-CCeE-----EEEECCCCCeEE
Q psy8285 333 QCHLSAVKAIAWCPWEPTLLATGGGICD--QTVRLWN----SMNGKEKCHVK----TD-SQVT-----SILWSEQYRELV 396 (507)
Q Consensus 333 ~~~~~~v~~~~~~~~~~~~~~~~~~~~d--~~i~i~d----~~~~~~~~~~~----~~-~~i~-----~~~~s~~~~~l~ 396 (507)
.+|...+..++|+||+ .++++.....+ ..|.+|| +.+++....+. .+ ..+. .+.|+|||+.++
T Consensus 249 ~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 327 (719)
T 1z68_A 249 ASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY 327 (719)
T ss_dssp HTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred CCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEE
Confidence 4577889999999996 56665331112 3588999 87777665552 33 3454 789999999776
Q ss_pred EEeccCCC--eEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC-----CcEEEEecCC
Q psy8285 397 TSHGKQDC--SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD-----ETISIWNCFP 455 (507)
Q Consensus 397 ~~~g~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~ 455 (507)
......+| .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+ +..++|.+..
T Consensus 328 ~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 328 KIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 53233444 67888887766 44565566668887777 88877766654 8899998864
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=8.1e-20 Score=174.58 Aligned_cols=280 Identities=16% Similarity=0.138 Sum_probs=182.9
Q ss_pred cceeeeeeCCCC-EEEEEcCCeEEEEECCCC-----------cee---EEEecCCCCCCceEEEEEccCCCeEEE---Ee
Q psy8285 166 FYTSGLDWGYHD-TLAVALDTSVYTWNTKTN-----------KTQ---LLVEYPTYDNAYISCVAWKPRTTDLAV---TN 227 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~-----------~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~ 227 (507)
..++.+++++++ +++++....+++|+.... ... ....+. +...|.+++|+|++++|++ ++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVP--MKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEEC--CSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCcccccc--CCCcccEEEEcCCCCEEEEEEecc
Confidence 357789999876 555554444999875321 000 001111 4567999999999999994 33
Q ss_pred CCCCcEEEEeCCCc--------ee---EEEEeecCccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecCCC
Q psy8285 228 TCTEYIDLWHEQEE--------RL---IQKLRTHMHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGD 293 (507)
Q Consensus 228 ~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 293 (507)
+.|+.|++||+.++ +. +..+.+|...|.+++| + +++|++++.||+|++||+++.. .......|..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-~~~~~~~~~~ 193 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-KVCATLPSTV 193 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE-EEEEEECGGG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-ceeeccCCCC
Confidence 88999999998765 22 4455679999999999 3 7799999999999999999874 3444556888
Q ss_pred ceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecC-------CCCCeeEEEEccCCCcEEEEEccCCCC----
Q psy8285 294 VVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQC-------HLSAVKAIAWCPWEPTLLATGGGICDQ---- 361 (507)
Q Consensus 294 ~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~d~---- 361 (507)
.|++++|+|+|++|++|+ |+.|++||++ + .....+.. |...+.++.|++++..+++...+ +|
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~--dg~~~~ 267 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA--DGTLET 267 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET--TCCSSS
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEecCceEEEEEccC--CCccCC
Confidence 999999999999999999 6999999998 3 33333332 23489999999987555554443 43
Q ss_pred --eEEEEeCCCCCe-----eeeee-------cC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc---cEEEEee--
Q psy8285 362 --TVRLWNSMNGKE-----KCHVK-------TD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL---HLIEELK-- 421 (507)
Q Consensus 362 --~i~i~d~~~~~~-----~~~~~-------~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~---~~~~~~~-- 421 (507)
.+++|++++.+. ...+. .. .+...+.+-++.++++++ .+..+.|.|+..... -....+.
T Consensus 268 ~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~-s~~s~dv~vl~~~~~~~~~~~~~~~d~ 346 (434)
T 2oit_A 268 SPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAA-SAASTEVSILARQSDQINWESWLLEDS 346 (434)
T ss_dssp CCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEE-ETTCSBCEEEEECTTSSCEEEEEECGG
T ss_pred CCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEe-cCCCCceeEEEecCCCCccEEEecccc
Confidence 489999986531 11111 11 122234444777777775 445555666654321 0011110
Q ss_pred ----------ccccceeEEEEC---------------CCCCEEEEEeCCCcEEEEecCC
Q psy8285 422 ----------IHQERILSAVLS---------------PDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 422 ----------~~~~~i~~~~~s---------------~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
........+++. |--..|..-+.||.+..|.+..
T Consensus 347 ~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 347 SRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp GCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 011112233321 1125678889999999999876
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=6.9e-21 Score=190.43 Aligned_cols=234 Identities=9% Similarity=0.006 Sum_probs=169.0
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecC-ccEEEEEee-CCEEEEEec---CCeEEEEECCC--
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHM-HQVIAMCWN-GNLLSCGTI---GGNILHYDVRT-- 280 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~-~~~l~~~~~---dg~i~i~d~~~-- 280 (507)
..+|.+++|+|||+.|++++..||+++||++.+++.. .+..+. ..+..+.|+ ++.+++++. +....+|.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence 4579999999999999998344999999999666554 444444 688999993 255665654 34456655443
Q ss_pred CCcCceeeecCCCceEEEEEcCCCCE--EEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccC
Q psy8285 281 HSDYPTAITREGDVVCGLKWSPNGRY--LASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGI 358 (507)
Q Consensus 281 ~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 358 (507)
..... .+... ..+...+|+||++. ++++.++.+.+||+.++ +.. .+..+.. .+++|+|||+.+++++...
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g---~~~-~l~~~~~--~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGG---GLR-ELARLPG--FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETT---EEE-EEEEESS--CEEEEEEETTEEEEEEEEE
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCC---cEE-EeecCCC--ceEEECCCCCEEEEEEEcC
Confidence 22122 23222 23446688888864 34444566679999876 332 3322333 7999999997777555410
Q ss_pred -CCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCC--eEEEEeCCCccEEEEeeccccceeEEE----
Q psy8285 359 -CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDC--SLKMWEYPRLHLIEELKIHQERILSAV---- 431 (507)
Q Consensus 359 -~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~---- 431 (507)
....|++||+.+++......+...+..++|+|||+.|++ +..++ .|++||+.+++.. .+..|...+..++
T Consensus 172 ~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~--~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG--LETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI 248 (582)
T ss_dssp TTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE--EECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred CCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE--ccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence 017899999998887644444467899999999999996 66777 8999999998887 7777877777777
Q ss_pred ----ECCCCCEEEEEeCCCcEEEEec
Q psy8285 432 ----LSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 432 ----~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
|+|||.++++++.|+.+++|++
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999988899999999999999
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=9.8e-20 Score=170.78 Aligned_cols=274 Identities=9% Similarity=0.024 Sum_probs=182.5
Q ss_pred EEEEEc--CCeEEEEEC--CCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC-CceeEEEEeec-C
Q psy8285 178 TLAVAL--DTSVYTWNT--KTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ-EERLIQKLRTH-M 251 (507)
Q Consensus 178 ~~~~~~--~~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~-~~~~~~~~~~~-~ 251 (507)
+++++. ++.|++|++ .+++...+..........+..++|+|++++|+++ +.+ .|.+|++. +++........ .
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~-~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGA-AMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEE-EBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEE-ccc-eEEEEEECCCCCEEEeeEeecC
Confidence 444553 256887764 5666544433211033467899999999999888 666 99999997 77665433211 1
Q ss_pred ccEEEEEe--eCCE--EEEEe-------------cCCeEEEEECCCCCcCceeee----cCCCceEEEEEcCCCCEEEEE
Q psy8285 252 HQVIAMCW--NGNL--LSCGT-------------IGGNILHYDVRTHSDYPTAIT----REGDVVCGLKWSPNGRYLASG 310 (507)
Q Consensus 252 ~~v~~~~~--~~~~--l~~~~-------------~dg~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~ 310 (507)
+....++| +++. ++++. .++.+.+|++.........+. .+...+.+++|+|||++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 22334566 6774 44543 689999999974322222222 245678999999999998877
Q ss_pred e--CCcEEEEEcC-CCCCCCCeeeec--CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC--CCCeee---eee--
Q psy8285 311 S--NNTVKIWDFR-QLDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM--NGKEKC---HVK-- 378 (507)
Q Consensus 311 ~--d~~i~i~d~~-~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~~~---~~~-- 378 (507)
. ++.|++||+. ++.. ..+..+. .+...+..++|+|+|+.++++... ++.|.+|++. +++... .+.
T Consensus 163 ~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~--~~~v~v~~~~~~~g~~~~~~~~~~~~ 239 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA--GNRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp ETTTTEEEEEEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cCCCCEEEEEEECCCCCE-EEeeeEecCCCCCCCCEeEECCCCCEEEEEECC--CCeEEEEEEeCCCCcEEEccceEEcC
Confidence 6 3899999998 5411 1122232 245678999999999877776653 7899999765 565421 221
Q ss_pred -cC----C-------CeEEEE-ECCCCCeEEEEeccCC----CeEEEEeCC-CccEEE---EeeccccceeEEEECC---
Q psy8285 379 -TD----S-------QVTSIL-WSEQYRELVTSHGKQD----CSLKMWEYP-RLHLIE---ELKIHQERILSAVLSP--- 434 (507)
Q Consensus 379 -~~----~-------~i~~~~-~s~~~~~l~~~~g~~d----~~i~v~d~~-~~~~~~---~~~~~~~~i~~~~~s~--- 434 (507)
.. . .+..++ |+|||++|+++....+ +.|.+|++. +++... ....+......++|+|
T Consensus 240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~ 319 (365)
T 1jof_A 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW 319 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc
Confidence 11 2 478999 9999999987422222 289999986 565443 2333455577899999
Q ss_pred CCCEEEEEeCC-CcEEEEecCCC
Q psy8285 435 DQTCVAAASAD-ETISIWNCFPR 456 (507)
Q Consensus 435 ~~~~l~s~~~d-g~i~iw~~~~~ 456 (507)
||++|++++.+ +.|.+|++...
T Consensus 320 dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 320 SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCEEEEEEcCCCeEEEEEEchh
Confidence 89999998864 89999999765
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=5.1e-20 Score=171.74 Aligned_cols=227 Identities=11% Similarity=0.100 Sum_probs=156.4
Q ss_pred eeeCCCC--EEEEE-cCCeEEEEECCCCceeEEEecCCCC----CCceEEEEEccCCCeEEEEeCCC------------C
Q psy8285 171 LDWGYHD--TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYD----NAYISCVAWKPRTTDLAVTNTCT------------E 231 (507)
Q Consensus 171 ~~~s~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~d------------g 231 (507)
++|+|++ +++++ .++.|++||+.+++......... . ...+..++|+|+|++++++ +.+ +
T Consensus 48 ~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~-~~~~~~~~~~~~~~~~ 125 (349)
T 1jmx_B 48 AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS-VPGEVGRSMYSFAISPDGKEVYAT-VNPTQRLNDHYVVKPP 125 (349)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC-STTEEEECSSCEEECTTSSEEEEE-EEEEEECSSCEEECCC
T ss_pred eEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc-ccccccccccceEECCCCCEEEEE-cccccccccccccCCC
Confidence 5666765 33333 67899999999988776665431 1 2347889999999999998 543 8
Q ss_pred cEEEEeCCCcee---EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCC--------------
Q psy8285 232 YIDLWHEQEERL---IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREG-------------- 292 (507)
Q Consensus 232 ~i~iwd~~~~~~---~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------------- 292 (507)
.|.+||+.+++. +..+. +...+.+++| +++ +++++ +.|.+||+.+++. ...+..+.
T Consensus 126 ~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 200 (349)
T 1jmx_B 126 RLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYF 200 (349)
T ss_dssp EEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCC
T ss_pred eEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce-eccccccccCCccccCccceee
Confidence 999999988543 33333 3345778888 677 55554 4499999987652 22222211
Q ss_pred -------C---ceEEEEEcCCCCEE----------EEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEcc-CCC
Q psy8285 293 -------D---VVCGLKWSPNGRYL----------ASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP-WEP 349 (507)
Q Consensus 293 -------~---~v~~~~~~~~~~~l----------~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 349 (507)
. ....+++++++... +... . +.+.++++. .+...+..++|+| +++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~sp~dg~ 268 (349)
T 1jmx_B 201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA------------DLTELYFTGLRSPKDPN 268 (349)
T ss_dssp CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE------------ECSSCEEEEEECSSCTT
T ss_pred ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc------------cCCCcceeeEecCCCCC
Confidence 0 34456777654221 1111 2 445544442 2455788999999 997
Q ss_pred cEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc
Q psy8285 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH 423 (507)
Q Consensus 350 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~ 423 (507)
.++++ ++.|.+||+.+++.+..+.....+.+++|+|++++|++ ++.++.|++||+.+++.+..+..+
T Consensus 269 ~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~--~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 269 QIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL--GGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEE--ESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEE--ecCCCeEEEEeccccceeeeeecC
Confidence 66654 67999999999998888877767889999999999998 567899999999999988887654
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=2.1e-18 Score=161.64 Aligned_cols=258 Identities=12% Similarity=0.107 Sum_probs=173.5
Q ss_pred eeeeeCCCC--EEEEEcC----CeEEEEECCC--CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 169 SGLDWGYHD--TLAVALD----TSVYTWNTKT--NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 169 ~~~~~s~~~--~~~~~~~----~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
..++|+|++ +++++.+ +.|.+|++.. ++...+..... +......+++ ++++|++++..++.|.+|++..
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~-~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT-MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC-SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc-CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence 358999998 4455553 7999998765 55555544443 4556777888 8888888856789999999975
Q ss_pred ceeEEE----Ee--e--------cCccEEEEEe--eCCEEEEEe-cCCeEEEEECCCCCc------C------ceeeecC
Q psy8285 241 ERLIQK----LR--T--------HMHQVIAMCW--NGNLLSCGT-IGGNILHYDVRTHSD------Y------PTAITRE 291 (507)
Q Consensus 241 ~~~~~~----~~--~--------~~~~v~~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~------~------~~~~~~~ 291 (507)
...+.. .. + +...+.+++| +++++++++ .++.|.+|++..... . .......
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP 209 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence 432211 11 1 1223577888 688665555 478999999876542 1 1122334
Q ss_pred CCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeee---ecCCCCCeeEEEEccCCCcEEEEEccCC-CCeEEE
Q psy8285 292 GDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVN---NQCHLSAVKAIAWCPWEPTLLATGGGIC-DQTVRL 365 (507)
Q Consensus 292 ~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~-d~~i~i 365 (507)
......++|+|||+++++++ ++.|.+||+.++.. ..+.. ...+......++|+|+|++++++.. . ++.|.+
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~--~~~~~i~v 286 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR--LKADGVAI 286 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC--SSSCEEEE
T ss_pred CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEeEEEecCCCCCCCcccEEECCCCCEEEEECC--CCCCEEEE
Confidence 55678999999999888777 49999999985411 11222 2233455789999999987766654 2 478999
Q ss_pred EeCC--CCC--eeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEE--eCCCccEEEEe-eccccceeEEEEC
Q psy8285 366 WNSM--NGK--EKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW--EYPRLHLIEEL-KIHQERILSAVLS 433 (507)
Q Consensus 366 ~d~~--~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~--d~~~~~~~~~~-~~~~~~i~~~~~s 433 (507)
|++. +++ .+..+.....+..++|+|+|++|+++ +..++.|.+| |..+++..... ..+...+.++.|.
T Consensus 287 ~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~-~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 287 FKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVA-CRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEE-ETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEE-ECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9985 444 33444444567899999999999885 4467899996 44566655443 2244567888875
No 163
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=3.1e-20 Score=177.44 Aligned_cols=214 Identities=17% Similarity=0.221 Sum_probs=154.5
Q ss_pred CcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC-------c-------CceeeecCCCc
Q psy8285 231 EYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS-------D-------YPTAITREGDV 294 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-------~-------~~~~~~~~~~~ 294 (507)
+.+++|+.... + ....+..+++ ++.++++++.++ +++|+..... . .......+...
T Consensus 23 ~~vri~~~~~~-----~--~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-----L--PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-----C--CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-----c--CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46777764321 1 2223455555 688899998887 8887753210 0 01112235667
Q ss_pred eEEEEEcCCCCEEE----EEe-CCcEEEEEcCCC-----CCCC---CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 295 VCGLKWSPNGRYLA----SGS-NNTVKIWDFRQL-----DAKR---PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 295 v~~~~~~~~~~~l~----~~~-d~~i~i~d~~~~-----~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
|.+++|+|++++|+ +++ |+.|++||+++. ...+ .+..+.+|...|.+++|+|++..++++++. |+
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~--Dg 172 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA--DG 172 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET--TS
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC--CC
Confidence 99999999999999 666 599999998754 1111 245566789999999999986677777765 99
Q ss_pred eEEEEeCCCCCeeeeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc-------ccceeEEEEC
Q psy8285 362 TVRLWNSMNGKEKCHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-------QERILSAVLS 433 (507)
Q Consensus 362 ~i~i~d~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-------~~~i~~~~~s 433 (507)
+|++||++++........ ...+.+++|+|+|++|++ |+.||.|++||.+ ++....+..| ...|.++.|+
T Consensus 173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~las--gs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAV--GKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEE--EETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEE--EcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 999999998866554444 368999999999999999 8899999999998 5555555433 3379999999
Q ss_pred CCCCEEEE-EeCCC------cEEEEecCCCC
Q psy8285 434 PDQTCVAA-ASADE------TISIWNCFPRD 457 (507)
Q Consensus 434 ~~~~~l~s-~~~dg------~i~iw~~~~~~ 457 (507)
+++.++++ .+.|| .+++|++...+
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred cCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 99887754 33443 38999998654
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=7.4e-19 Score=180.44 Aligned_cols=275 Identities=14% Similarity=0.187 Sum_probs=189.0
Q ss_pred eeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCC--CCCceEEEEEccCCCeEEEEeCCC---------CcEEEE
Q psy8285 169 SGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTY--DNAYISCVAWKPRTTDLAVTNTCT---------EYIDLW 236 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~d---------g~i~iw 236 (507)
..+.|+||+ +++.+ ++.|++||+.+++...++..... .......+.|||||++|+.+ +.+ +.+.+|
T Consensus 20 ~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~-~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLE-YNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEE-EEEEECSSSCEEEEEEEE
T ss_pred cccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEE-ECCeeeEEEccceEEEEE
Confidence 368999998 55555 99999999999987666554210 11123458999999999988 554 677899
Q ss_pred eCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCce-----------------EE
Q psy8285 237 HEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV-----------------CG 297 (507)
Q Consensus 237 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-----------------~~ 297 (507)
|+.+++.. .+..+...+...+| ||+.||.+. ++.|++|++.++........++...+ ..
T Consensus 98 d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 98 DLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp ETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred ECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence 99998754 35667778999999 799998885 78999999987652221222222222 34
Q ss_pred EEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC---CC
Q psy8285 298 LKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN---GK 372 (507)
Q Consensus 298 ~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~ 372 (507)
+.|||||+.|+.++ | ..+.+|++....... .+...+..+.+.+.|.. . ...+|++||+.+ ++
T Consensus 176 ~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~------~~~~~~~~~~yp~~G~~-----~--~~~~l~v~d~~~~~~~~ 242 (740)
T 4a5s_A 176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES------LQYPKTVRVPYPKAGAV-----N--PTVKFFVVNTDSLSSVT 242 (740)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEEEECCSTT------CSSCEEEEEECCBTTSC-----C--CEEEEEEEETTSCCSSS
T ss_pred eEECCCCCEEEEEEEcccCCceEEEEeecCCC------CCCCcceeecCCCCcCc-----C--CeeEEEEEECCCCCCCC
Confidence 89999999999987 5 779999875431111 34556677888777632 1 145799999998 73
Q ss_pred --eeeeee-------cCCCeEEEEECCCCCeEEEEec--cCCCeEEEEeCCCcc----EE--EEe--ecccccee-----
Q psy8285 373 --EKCHVK-------TDSQVTSILWSEQYRELVTSHG--KQDCSLKMWEYPRLH----LI--EEL--KIHQERIL----- 428 (507)
Q Consensus 373 --~~~~~~-------~~~~i~~~~~s~~~~~l~~~~g--~~d~~i~v~d~~~~~----~~--~~~--~~~~~~i~----- 428 (507)
....+. ....+..++|+|||+.++.... ..+..|++||+.+++ +. ..+ ..|...|.
T Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~ 322 (740)
T 4a5s_A 243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS 322 (740)
T ss_dssp CCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred cceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence 222332 2346899999999997665322 233479999998887 22 222 34555544
Q ss_pred EEEECCCCCEEE-EEeC-CC--cEEEEecCCCCccc
Q psy8285 429 SAVLSPDQTCVA-AASA-DE--TISIWNCFPRDKKR 460 (507)
Q Consensus 429 ~~~~s~~~~~l~-s~~~-dg--~i~iw~~~~~~~~~ 460 (507)
.+.|+|||+.|+ ..+. +| .|++|++..++...
T Consensus 323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp CCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred CceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 789999999877 6654 33 57888887665443
No 165
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.83 E-value=4.2e-17 Score=159.56 Aligned_cols=284 Identities=12% Similarity=0.019 Sum_probs=197.2
Q ss_pred eeeCCCC--EEEEEcCCeEEEEECC--CCceeEEEecCCCCCCceEEEEEc----cCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 171 LDWGYHD--TLAVALDTSVYTWNTK--TNKTQLLVEYPTYDNAYISCVAWK----PRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 171 ~~~s~~~--~~~~~~~~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
+.++||+ +++++.++.|.+||+. +++....+.. ......++|+ |+|+++++++..++.|.++|..+.+
T Consensus 202 v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~----G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~ 277 (567)
T 1qks_A 202 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI----GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 277 (567)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec----CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence 3444554 5556788999999996 6665554442 3356899999 6999999986677999999999999
Q ss_pred eEEEEeec-----------CccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEE
Q psy8285 243 LIQKLRTH-----------MHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLA 308 (507)
Q Consensus 243 ~~~~~~~~-----------~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 308 (507)
.+..+... ...+..+.. + ...++.....|.|.++|...................++.|+|++++++
T Consensus 278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~ 357 (567)
T 1qks_A 278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFI 357 (567)
T ss_dssp EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEE
T ss_pred EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEE
Confidence 88876531 125666665 2 445666667799999998765422222223445677899999999988
Q ss_pred EEe-C-CcEEEEEcCCCCCCCCeeeecC-----CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-------CCee
Q psy8285 309 SGS-N-NTVKIWDFRQLDAKRPQVNNQC-----HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-------GKEK 374 (507)
Q Consensus 309 ~~~-d-~~i~i~d~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------~~~~ 374 (507)
++. . +.|.++|+.++ +....+.. |.+.-..+ ++|++..+++++. ..++.|.++|..+ .+.+
T Consensus 358 va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~-~g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 358 TAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSH-MGDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp EEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEE
T ss_pred EEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCC-CCCCeEEEecCCCCCCccccCEEE
Confidence 877 3 99999999987 43333322 33222222 5787666766653 1278999999987 5677
Q ss_pred eeeecCC-CeEEEEECCCCCeEEEEec-cC----CCeEEEEeCCCc-----cE-EEEee--------ccccceeEEEECC
Q psy8285 375 CHVKTDS-QVTSILWSEQYRELVTSHG-KQ----DCSLKMWEYPRL-----HL-IEELK--------IHQERILSAVLSP 434 (507)
Q Consensus 375 ~~~~~~~-~i~~~~~s~~~~~l~~~~g-~~----d~~i~v~d~~~~-----~~-~~~~~--------~~~~~i~~~~~s~ 434 (507)
..+...+ .-..+..+|+++++.+... .. .++|.++|+.+. .. ...+. .....+..+.|+|
T Consensus 433 ~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 433 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred EEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence 7777653 3355788999999998421 11 469999999876 21 12232 1235788999999
Q ss_pred CCCEEEEEe-----CCCcEEEEecCCCCccccee
Q psy8285 435 DQTCVAAAS-----ADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 435 ~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~ 463 (507)
+|+.+..+. .++.|.|+|..+.+....++
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 999876653 37899999999988766554
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=2.8e-18 Score=160.02 Aligned_cols=246 Identities=9% Similarity=0.038 Sum_probs=170.9
Q ss_pred CCeEEEEECCCCceeEEEecCCC---CCCceEEEEEccCCCeEEEEeCC-CCcEEEEeCCCceeEEE-EeecCccEEEEE
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTY---DNAYISCVAWKPRTTDLAVTNTC-TEYIDLWHEQEERLIQK-LRTHMHQVIAMC 258 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~-dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~ 258 (507)
++.|.+||..+++....+..... +......++|+|+|++|+++... ++.|.+||+.+++.+.. +.. ... ..+.
T Consensus 80 ~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~~-~~v~ 157 (361)
T 2oiz_A 80 SDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AGC-WSVI 157 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TTE-EEEE
T ss_pred CCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CCc-ceeE
Confidence 56799999998887766654310 12356789999999999998333 68999999999988877 542 222 1122
Q ss_pred e--e-CCEEEEEecCCeEEEEECCCCCcCc------eeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCC
Q psy8285 259 W--N-GNLLSCGTIGGNILHYDVRTHSDYP------TAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRP 328 (507)
Q Consensus 259 ~--~-~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~ 328 (507)
+ + ...+++.+.||.+.+|++....... ..+.....++ .+.+++++..++..+ ++.|.++|+..... ..
T Consensus 158 ~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~ 235 (361)
T 2oiz_A 158 PQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV-KV 235 (361)
T ss_dssp ECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC-EE
T ss_pred EcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc-ee
Confidence 2 3 4678888899999999986532222 1111222222 233467777776666 58999999875410 11
Q ss_pred eeeecC------C----CCCeeEEEEccCCCcEEEEEcc--------CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECC
Q psy8285 329 QVNNQC------H----LSAVKAIAWCPWEPTLLATGGG--------ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSE 390 (507)
Q Consensus 329 ~~~~~~------~----~~~v~~~~~~~~~~~~~~~~~~--------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~ 390 (507)
...+.. + ......++|+|++++++++... .....|.+||+.+++.+..+..+. +..++|+|
T Consensus 236 ~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~sp 314 (361)
T 2oiz_A 236 DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQ 314 (361)
T ss_dssp EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEET
T ss_pred cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECC
Confidence 111110 0 1122237899998888876530 013589999999999999998888 99999999
Q ss_pred CCCeEEEEeccCCCeEEEEeCCCc--cEEEEeeccccceeEEEECCCCC
Q psy8285 391 QYRELVTSHGKQDCSLKMWEYPRL--HLIEELKIHQERILSAVLSPDQT 437 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~~~~s~~~~ 437 (507)
+|++|++ +.. +.|.+||..++ +.+..+..+......++++|+|+
T Consensus 315 dg~~l~v--~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 315 QRNLMLT--LDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTTEEEE--ECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCCEEEE--eCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999998 444 99999999999 99988866667778899999986
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=4.7e-19 Score=168.32 Aligned_cols=274 Identities=9% Similarity=-0.024 Sum_probs=179.4
Q ss_pred eeeeeeCCCC-EEE-EEc---CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 168 TSGLDWGYHD-TLA-VAL---DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 168 i~~~~~s~~~-~~~-~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
+..++||||+ .++ +.. +..|++|++.+++...+... +......+.|+|+|++|+.+ +.++.|++||+.+++
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~spdg~~l~~~-~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEG---KGDNTFGGFISTDERAFFYV-KNELNLMKVDLETLE 113 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCS---SCBCTTTCEECTTSSEEEEE-ETTTEEEEEETTTCC
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecC---CCCccccceECCCCCEEEEE-EcCCcEEEEECCCCC
Confidence 5568899998 444 332 23799999988876544321 22223347899999999988 788899999999887
Q ss_pred eEEEEeecCccEEE---EE----------------e--eCCEEEEE-----ecCCeEEEEECCCCCcCceeeecCCCceE
Q psy8285 243 LIQKLRTHMHQVIA---MC----------------W--NGNLLSCG-----TIGGNILHYDVRTHSDYPTAITREGDVVC 296 (507)
Q Consensus 243 ~~~~~~~~~~~v~~---~~----------------~--~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 296 (507)
.......+...... +. | +++.++.. ..+..|++||+.+++ ...+..+...+.
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~~~~~~~~~~ 191 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE--LEVIHQDTAWLG 191 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC--EEEEEEESSCEE
T ss_pred cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc--EEeeccCCcccc
Confidence 66555544432111 11 1 23333222 345679999998765 333445667789
Q ss_pred EEEEcC-CCCEEEEEeC-------CcEEEEEcCCCCCCCCeeeecCC--CCCeeEEEEccCCCcEEEEEccCCC--CeEE
Q psy8285 297 GLKWSP-NGRYLASGSN-------NTVKIWDFRQLDAKRPQVNNQCH--LSAVKAIAWCPWEPTLLATGGGICD--QTVR 364 (507)
Q Consensus 297 ~~~~~~-~~~~l~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~d--~~i~ 364 (507)
.+.|+| +++.|+..++ ..|.+||+..+ . ...+..+ ...+..+.|+|+|+.+++....... +.|+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~---~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS---N-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC---C-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECCCC---c-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 999999 7887776652 36888888654 2 2233222 2357889999999887776542112 4599
Q ss_pred EEeCCCCCeeeeeecCCCeEEEEECC-CCCeEEEEec--------------cCCCeEEEEeCCCccEEEEeecccc----
Q psy8285 365 LWNSMNGKEKCHVKTDSQVTSILWSE-QYRELVTSHG--------------KQDCSLKMWEYPRLHLIEELKIHQE---- 425 (507)
Q Consensus 365 i~d~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~g--------------~~d~~i~v~d~~~~~~~~~~~~~~~---- 425 (507)
+||+.+++........ ... +.|+| +|+++++... ..+..|++||+.+++. ..+..+..
T Consensus 268 ~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~ 344 (396)
T 3c5m_A 268 KANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDV 344 (396)
T ss_dssp EECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCC
T ss_pred EEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCcccc
Confidence 9999888765433322 233 89999 9998876311 1347899999988764 34444443
Q ss_pred -------ceeEEEECCCCCEEEEEeC-CCcEEEEecC
Q psy8285 426 -------RILSAVLSPDQTCVAAASA-DETISIWNCF 454 (507)
Q Consensus 426 -------~i~~~~~s~~~~~l~s~~~-dg~i~iw~~~ 454 (507)
.+..++|+|||+.|+.++. ++...+|.+.
T Consensus 345 ~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 345 LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 2567899999998887764 5555565543
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=5.8e-19 Score=167.24 Aligned_cols=263 Identities=10% Similarity=-0.005 Sum_probs=176.1
Q ss_pred EECCCCceeEEEecCCCCCCceEE-----EEEccCCCeEEEEeCCCC--cEEEEeCCCceeEEEEeecCccEEEEEe--e
Q psy8285 190 WNTKTNKTQLLVEYPTYDNAYISC-----VAWKPRTTDLAVTNTCTE--YIDLWHEQEERLIQKLRTHMHQVIAMCW--N 260 (507)
Q Consensus 190 w~~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 260 (507)
++..++.....++ . +...... .+|+|||++|+.++..+| .|.+||+.+++.......+...+..+.| |
T Consensus 15 ~~~~~g~~~~~lt--~-~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 15 QDASTGAQVTRLT--P-PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp ECTTTCCEEEECS--C-TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred ecCCCCcceEEec--C-CcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence 4556665444333 2 4444555 789999999999833366 4888899998877766666555544556 8
Q ss_pred CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEE--EcCCCCEEEEEe-----------------------CCcE
Q psy8285 261 GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLK--WSPNGRYLASGS-----------------------NNTV 315 (507)
Q Consensus 261 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~-----------------------d~~i 315 (507)
++.|+.++.++.|++||+.+++ .......+...+.... ++|++++++... +..|
T Consensus 92 g~~l~~~~~~~~l~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 92 DDALFYVKDGRNLMRVDLATLE-ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp SSEEEEEETTTEEEEEETTTCC-EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCc-ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 9999999999999999999876 3334444455454333 489999887421 2679
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEcc-CCCcEEEEEccCC---CCeEEEEeCCCCCeeeeeecC--CCeEEEEEC
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP-WEPTLLATGGGIC---DQTVRLWNSMNGKEKCHVKTD--SQVTSILWS 389 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s 389 (507)
++||+.++ ....+..+...+..+.|+| +++.++.+..+.. ...|.++|...++........ ..+..+.|+
T Consensus 171 ~~~d~~~g----~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 171 MRVDLKTG----ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp EEEETTTC----CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC
T ss_pred EEEECCCC----ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC
Confidence 99999876 3444445667889999999 9977766654211 347888888766554433333 247789999
Q ss_pred CCCCeEEEEeccCC---CeEEEEeCCCccE--EEEeeccccc---eeEEEECCCCCEEEEE---------eCCCcEEEEe
Q psy8285 390 EQYRELVTSHGKQD---CSLKMWEYPRLHL--IEELKIHQER---ILSAVLSPDQTCVAAA---------SADETISIWN 452 (507)
Q Consensus 390 ~~~~~l~~~~g~~d---~~i~v~d~~~~~~--~~~~~~~~~~---i~~~~~s~~~~~l~s~---------~~dg~i~iw~ 452 (507)
|||+.|+..+.... ..|++||+.+++. +..+.++... ...+.|+|||+.|+.. ..+..|++||
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 99998876422112 2399999998874 3333331111 2234799999988754 4567899999
Q ss_pred cCCCCccc
Q psy8285 453 CFPRDKKR 460 (507)
Q Consensus 453 ~~~~~~~~ 460 (507)
+.+++...
T Consensus 327 ~~~~~~~~ 334 (388)
T 3pe7_A 327 MKNGTQHR 334 (388)
T ss_dssp TTTTEEEE
T ss_pred ccCCceEE
Confidence 98876543
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.82 E-value=2.9e-17 Score=151.46 Aligned_cols=240 Identities=11% Similarity=0.086 Sum_probs=182.2
Q ss_pred CCceEEEEEccCCCeEEEEeCCC------------------------CcEEEEeCCCceeEEEEe-ecCccEEEEEe--e
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCT------------------------EYIDLWHEQEERLIQKLR-THMHQVIAMCW--N 260 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~ 260 (507)
-..+.+++++|+|+.+++. ..+ +.|.+||..+++.+..+. .+......+++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFH-RGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEE-CTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEe-CCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 4568999999999887776 555 479999999888876654 34457888888 5
Q ss_pred CCEEEEEecCCeEEEEECCCCCcCceee---------ecCCCceEEEEEcC-CCCEEEEEe--CCcEEEEEcCCCCCCCC
Q psy8285 261 GNLLSCGTIGGNILHYDVRTHSDYPTAI---------TREGDVVCGLKWSP-NGRYLASGS--NNTVKIWDFRQLDAKRP 328 (507)
Q Consensus 261 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~--d~~i~i~d~~~~~~~~~ 328 (507)
++++++...++.|++||..........+ ..+......++++| +++++++.+ ++.|++||.. + ..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g---~~ 177 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-G---KF 177 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-S---CE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-C---CE
Confidence 7888888888999999987543233333 23444688999999 888888875 4999999944 3 44
Q ss_pred eeeecC----------CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECC-----
Q psy8285 329 QVNNQC----------HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSE----- 390 (507)
Q Consensus 329 ~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~----- 390 (507)
+..+.. +......++++|++..++++..+ ++.|++||..+++.+..+... ..+..++++|
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~--~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~ 255 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE--NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFA 255 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT--TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC--CCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEE
Confidence 444432 22348899999996688888765 899999999989988877533 4688999999
Q ss_pred -CCCeEEEEeccCCCeEEEEeCCCccEEEEee---ccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 391 -QYRELVTSHGKQDCSLKMWEYPRLHLIEELK---IHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 391 -~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+|+..++ ...+..|++||..+++.+..+. ++......++++|+|..+++...++.|++|++...
T Consensus 256 ~~g~~~v~--~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 256 VNGKPYFG--DQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EECCCCTT--CSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred eCCCEEec--cCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 3332222 3445689999999999988873 56677899999999988888888999999998653
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=2.1e-16 Score=142.83 Aligned_cols=236 Identities=14% Similarity=0.139 Sum_probs=171.2
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee------cCccEEEEEee---CCEEEEEec-CCeEEEE
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT------HMHQVIAMCWN---GNLLSCGTI-GGNILHY 276 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~---~~~l~~~~~-dg~i~i~ 276 (507)
+-..+.+++++++++.+++. ..++.|.+||.. ++.+..+.. +...+..++++ ++++++... ++.|.+|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~-~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVAD-TNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEE-GGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEE-CCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 45678999999999877776 788999999987 566655542 33567888882 444444433 7899999
Q ss_pred ECCCCCcCceeee-cCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeec--CCCCCeeEEEEccCCCcEE
Q psy8285 277 DVRTHSDYPTAIT-REGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLL 352 (507)
Q Consensus 277 d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~ 352 (507)
|.. ++ ....+. .+...+.+++++|+++++++.. ++.|.+||... +.+..+. .+...+..++++|++ .++
T Consensus 106 d~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~p~~i~~~~~g-~l~ 178 (286)
T 1q7f_A 106 NQY-GQ-FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----NVLHKFGCSKHLEFPNGVVVNDKQ-EIF 178 (286)
T ss_dssp CTT-SC-EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECTTTCSSEEEEEECSSS-EEE
T ss_pred CCC-Cc-EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC----CEEEEeCCCCccCCcEEEEECCCC-CEE
Confidence 943 33 223332 3345789999999999777766 48999999653 3444442 344568999999998 466
Q ss_pred EEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCCeEEEEeccCCC-eEEEEeCCCccEEEEeecccc--c
Q psy8285 353 ATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYRELVTSHGKQDC-SLKMWEYPRLHLIEELKIHQE--R 426 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~d~-~i~v~d~~~~~~~~~~~~~~~--~ 426 (507)
++... ++.|++||. +++.+..+... ..+..++++++|+.+++ ...++ .|.+||. +++.+..+..+.. .
T Consensus 179 v~~~~--~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~--~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 252 (286)
T 1q7f_A 179 ISDNR--AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIA--DNHNNFNLTIFTQ-DGQLISALESKVKHAQ 252 (286)
T ss_dssp EEEGG--GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEE--ECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred EEECC--CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEE--eCCCCEEEEEECC-CCCEEEEEcccCCCCc
Confidence 66554 899999997 55666666443 46899999999987777 55565 9999995 5677777765433 4
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 427 ILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 427 i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
+.+++++|+|+++++ +.|+.|++|++....+
T Consensus 253 ~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 253 CFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred ceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 779999999987776 6799999999866443
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.80 E-value=2.6e-17 Score=153.44 Aligned_cols=263 Identities=8% Similarity=0.015 Sum_probs=180.4
Q ss_pred cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC---------CCCcEEEEeCCCceeEEEEeec---
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT---------CTEYIDLWHEQEERLIQKLRTH--- 250 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~dg~i~iwd~~~~~~~~~~~~~--- 250 (507)
.|+.|++||..+++....+.. +..+ .++|+|++++++++.. .++.|.+||..+++.+..+...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~---g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPT---AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEEC---CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred ccCeEEEEECCCCeEEEEecC---CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 367999999999887655543 3333 8999999999999831 2567999999999888887643
Q ss_pred ---CccEEEEEe--eCCEEEEEec--CCeEEEEECCCCCcCcee-eecCCCceEEEEEcCCC-CEEEEEe-CCcEEEEEc
Q psy8285 251 ---MHQVIAMCW--NGNLLSCGTI--GGNILHYDVRTHSDYPTA-ITREGDVVCGLKWSPNG-RYLASGS-NNTVKIWDF 320 (507)
Q Consensus 251 ---~~~v~~~~~--~~~~l~~~~~--dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~ 320 (507)
......+++ ++++|+++.. ++.|.+||+.+.+ .... +. .. ....+.+.|++ ..+++.+ ||.+.+|+.
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~-~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~ 180 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD-YVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINL 180 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE-EEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc-EEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence 223445666 7999988874 5789999999875 3333 22 22 22335667765 4555555 688999988
Q ss_pred CCCCCCCCe------eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee--eeeec-----------CC
Q psy8285 321 RQLDAKRPQ------VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK--CHVKT-----------DS 381 (507)
Q Consensus 321 ~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~-----------~~ 381 (507)
.... +.. ..+.....++ .+.++|++..++.... ++.+.++|+...+.. ..+.. ..
T Consensus 181 ~~~g--~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~---~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 181 GEDG--KVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSY---YGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp CTTS--SEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBT---TSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred CCCC--cEeeeccccceEcCCCCce-EEEecccCCEEEEEeC---CCeEEEEEecCCCceecccccccCccccccccccC
Confidence 6521 222 1112122222 3344677766666553 889999998765422 11111 01
Q ss_pred CeEEEEECCCCCeEEEEec-c--------CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 382 QVTSILWSEQYRELVTSHG-K--------QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g-~--------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
....++++|+++.++++.. . ..+.|.+||+.+++.+..+..+. ..+++|+|||++|++++. +.|.+||
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D 331 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYD 331 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEE
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEE
Confidence 1123789999998887421 0 13589999999999999998877 899999999999998887 9999999
Q ss_pred cCCC--Ccccce
Q psy8285 453 CFPR--DKKRKA 462 (507)
Q Consensus 453 ~~~~--~~~~~~ 462 (507)
..++ +.+..+
T Consensus 332 ~~t~~l~~~~~i 343 (361)
T 2oiz_A 332 ISQPEPKLLRTI 343 (361)
T ss_dssp CSSSSCEEEEEE
T ss_pred CCCCcceeeEEe
Confidence 9998 666554
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=6e-17 Score=151.75 Aligned_cols=239 Identities=11% Similarity=0.066 Sum_probs=162.4
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECC-CCceeEEEecCCCCCCceEEEEEccCCCe--EEEEeC-------------C
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTK-TNKTQLLVEYPTYDNAYISCVAWKPRTTD--LAVTNT-------------C 229 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~-------------~ 229 (507)
+..++|+|++ +++++.+ .|.+|++. +++......... + +.+.+++|+|+|++ ++++ . .
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~-~-g~~~~~~~spdg~~l~~~~~-~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI-G-GHPRANDADTNTRAIFLLAA-KQPPYAVYANPFYKF 117 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC-C-SSGGGGCTTSCCEEEEEEEC-SSTTCCEEEEEESSS
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec-C-CCCccEEECCCCCEEEEEEe-cCCcceeccceeecC
Confidence 4468999998 4445555 99999997 777654444321 1 23556899999985 3444 3 6
Q ss_pred CCcEEEEeCC-CceeEEEEee----cCccEEEEEe--eCCEEEEEec-CCeEEEEECC-CCCcC-ceeee--cCCCceEE
Q psy8285 230 TEYIDLWHEQ-EERLIQKLRT----HMHQVIAMCW--NGNLLSCGTI-GGNILHYDVR-THSDY-PTAIT--REGDVVCG 297 (507)
Q Consensus 230 dg~i~iwd~~-~~~~~~~~~~----~~~~v~~~~~--~~~~l~~~~~-dg~i~i~d~~-~~~~~-~~~~~--~~~~~v~~ 297 (507)
+|.+.+|++. +++....+.. +...+.+++| ++++++++.. ++.|++|++. +++.. ...+. .+...+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 8999999997 4655444432 4567889999 6888877664 6799999998 55421 11222 23567899
Q ss_pred EEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCC------eeeec----CCCC------CeeEEE-EccCCCcEEEEEccC
Q psy8285 298 LKWSPNGRYLASGS--NNTVKIWDFRQLDAKRP------QVNNQ----CHLS------AVKAIA-WCPWEPTLLATGGGI 358 (507)
Q Consensus 298 ~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~------~~~~~----~~~~------~v~~~~-~~~~~~~~~~~~~~~ 358 (507)
++|+|||+++++++ ++.|.+|++..... +. +..+. +|.. .+..++ |+|||+.++++..+
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~- 275 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATH-MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA- 275 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE-
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCC-cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC-
Confidence 99999999998877 38999998763210 21 11221 1122 588999 99999877766542
Q ss_pred CCC-----eEEEEeCC-CCCeeee---eec-CCCeEEEEECC---CCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 359 CDQ-----TVRLWNSM-NGKEKCH---VKT-DSQVTSILWSE---QYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 359 ~d~-----~i~i~d~~-~~~~~~~---~~~-~~~i~~~~~s~---~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
+. .|.+|++. +++.... ... ...+..++|+| +|++|+++ ...++.|.+|++...
T Consensus 276 -~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~-~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 276 -NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT-DDQEGWLEIYRWKDE 342 (365)
T ss_dssp -SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE-CSSSCEEEEEEEETT
T ss_pred -CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE-EcCCCeEEEEEEchh
Confidence 33 89999986 5664432 322 24567789999 89999984 344589999998665
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.78 E-value=3.1e-16 Score=145.06 Aligned_cols=262 Identities=12% Similarity=0.067 Sum_probs=180.6
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
+.++.|+++. ++..+.++.++.|. ++... .+.. +...+.+++|+|+++.+++. ..++.|.+||..+++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~-~~~~~~~~~~~~~g~l~~~~-~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTIT---AEPWL--EISK-KGLQLEGLNFDRQGQLFLLD-VFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEE--EEES-SCCCEEEEEECTTSCEEEEE-TTTCEEEEECTTTCCEEE
T ss_pred cceeeecCCccceeEEeecccCcccc---cceeE--EEec-cCccccCcEECCCCCEEEEE-CCCCEEEEEeCCCCcEEE
Confidence 4567777765 44446777888882 23222 2222 55678999999999866666 788999999998887665
Q ss_pred EEeecCccEEEEEe--eCCEEEEEecC----CeEEEEECCCCCcCceeee--cCCCceEEEEEcCCCCEEEEEeC-----
Q psy8285 246 KLRTHMHQVIAMCW--NGNLLSCGTIG----GNILHYDVRTHSDYPTAIT--REGDVVCGLKWSPNGRYLASGSN----- 312 (507)
Q Consensus 246 ~~~~~~~~v~~~~~--~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~d----- 312 (507)
....+...+.++++ +++++++...+ +.|.+||..+.. ....+. .....+.+++++|+|+++++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~ 159 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN 159 (333)
T ss_dssp EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTB
T ss_pred EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEccCccCCcccceEECCCCCEEEEeccccccC
Confidence 55456678999999 57777776655 689999988765 221222 23457899999999998877652
Q ss_pred --CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-CCeeeee--------ecCC
Q psy8285 313 --NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-GKEKCHV--------KTDS 381 (507)
Q Consensus 313 --~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~--------~~~~ 381 (507)
+.|..+|...+ .+..+......+..++|+|+++.++++... ++.|.+||+.+ ++....+ ....
T Consensus 160 ~~~~l~~~~~~~~----~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~--~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~ 233 (333)
T 2dg1_A 160 PLGGVYYVSPDFR----TVTPIIQNISVANGIALSTDEKVLWVTETT--ANRLHRIALEDDGVTIQPFGATIPYYFTGHE 233 (333)
T ss_dssp CCEEEEEECTTSC----CEEEEEEEESSEEEEEECTTSSEEEEEEGG--GTEEEEEEECTTSSSEEEEEEEEEEECCSSS
T ss_pred CCceEEEEeCCCC----EEEEeecCCCcccceEECCCCCEEEEEeCC--CCeEEEEEecCCCcCcccccceEEEecCCCC
Confidence 34555555433 233332334457899999999777776654 78999999864 3332211 1123
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccc------ceeEEEECCCCCEEEEEeCCC
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE------RILSAVLSPDQTCVAAASADE 446 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~s~~~dg 446 (507)
.+..++++++|+.+++ ...++.|.+||. +++.+..+..+.. .+.+++|+||++.|+.++.++
T Consensus 234 ~~~~i~~d~~G~l~v~--~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 234 GPDSCCIDSDDNLYVA--MYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEEEBTTCCEEEE--EETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCceEECCCCCEEEE--EcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 6788999999997777 455789999998 5666666654433 689999999987776665553
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=8.2e-17 Score=163.61 Aligned_cols=281 Identities=9% Similarity=-0.021 Sum_probs=186.5
Q ss_pred cceeeeeeCCCCEEEEE----cCCeEEEEECCCCceeEEEecCCCCCCceE---------EEEEc--cCCCe-EEEEeCC
Q psy8285 166 FYTSGLDWGYHDTLAVA----LDTSVYTWNTKTNKTQLLVEYPTYDNAYIS---------CVAWK--PRTTD-LAVTNTC 229 (507)
Q Consensus 166 ~~i~~~~~s~~~~~~~~----~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~~~~ 229 (507)
..+..+++++++++.+. .++...||....+..... +.. +...+. ...|+ |||+. |+.+...
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--l~~-~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEES--ALP-APWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEE--SSC-TTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcce--eCC-CCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 35778999998844443 367889998543332222 222 444555 56665 99998 8877344
Q ss_pred CCcEEEEeCC--CceeEEEEee-----cCccEEEEEe--eCCEEEEEecC----------CeEEEEECCC------CCcC
Q psy8285 230 TEYIDLWHEQ--EERLIQKLRT-----HMHQVIAMCW--NGNLLSCGTIG----------GNILHYDVRT------HSDY 284 (507)
Q Consensus 230 dg~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~--~~~~l~~~~~d----------g~i~i~d~~~------~~~~ 284 (507)
+..|.++++. .......+.. |...+..++| |++.|++++.+ ..|++||+.+ +.
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-- 178 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-- 178 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG--
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc--
Confidence 6677777775 2033444554 5667888888 78999988876 5899999987 33
Q ss_pred ceeee-cCCCceEEEEEcCCCCEEEEEe-CC--------cEEEEEcCC-CCCCCCeeeecCCCCCeeEEEEccCCCcEEE
Q psy8285 285 PTAIT-REGDVVCGLKWSPNGRYLASGS-NN--------TVKIWDFRQ-LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLA 353 (507)
Q Consensus 285 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d~--------~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 353 (507)
...+. .+...+..++|+|||++|+.++ ++ .|++||+.. +...........+...+..+.|+|||+ +++
T Consensus 179 ~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~ 257 (662)
T 3azo_A 179 VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIV 257 (662)
T ss_dssp SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEE
T ss_pred eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEE
Confidence 34455 5566788899999999998776 43 799999983 311012222333567899999999997 666
Q ss_pred EEccCCCC--eEEEEeCCCCCeeeeeecCCC---------eEEEEECCCCCeEEEEeccCCCeEEEE--eCCCccEEEEe
Q psy8285 354 TGGGICDQ--TVRLWNSMNGKEKCHVKTDSQ---------VTSILWSEQYRELVTSHGKQDCSLKMW--EYPRLHLIEEL 420 (507)
Q Consensus 354 ~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~---------i~~~~~s~~~~~l~~~~g~~d~~i~v~--d~~~~~~~~~~ 420 (507)
++.. ++ .|.+||+.+++.......+.. +..++|+|+++.+++ +.. +.++|| |..+++ +..+
T Consensus 258 ~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~--~~~-~~~~l~~~d~~~~~-~~~l 331 (662)
T 3azo_A 258 ATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV--HGK-GAAVLGILDPESGE-LVDA 331 (662)
T ss_dssp EECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE--EBS-SSCEEEEEETTTTE-EEEC
T ss_pred EECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE--EEc-CccEEEEEECCCCc-EEEe
Confidence 6654 66 788888777765554443321 467889999998888 566 888888 655554 6777
Q ss_pred eccccceeEE-EECCCCCEEEEEeCCCc--EEEEecCCCCc
Q psy8285 421 KIHQERILSA-VLSPDQTCVAAASADET--ISIWNCFPRDK 458 (507)
Q Consensus 421 ~~~~~~i~~~-~~s~~~~~l~s~~~dg~--i~iw~~~~~~~ 458 (507)
..|...+..+ +++.+.-.+++++.+.. |.+|++.+++.
T Consensus 332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 7777777776 54433334445555544 55556656554
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=1.9e-15 Score=140.61 Aligned_cols=239 Identities=8% Similarity=0.054 Sum_probs=164.9
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC---C--cEEEEeCCCceeEEEEeecCccEEEEE
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT---E--YIDLWHEQEERLIQKLRTHMHQVIAMC 258 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~~~ 258 (507)
++.|++|++.+++...+ ..+..++|+|+|++|+.+ +.+ + .|.+||+.+++.......+ . +..+.
T Consensus 42 ~~~l~~~d~~~~~~~~l--------~~~~~~~~SpDg~~la~~-~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~ 110 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI--------ENATMPRISPDGKKIAFM-RANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLE 110 (347)
T ss_dssp EEEEEEEETTTCCEEEE--------ESCEEEEECTTSSEEEEE-EEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEE
T ss_pred cceEEEEeCCCCceEEc--------ccCCCeEECCCCCEEEEE-EeccCCCcceEEEEECCCCceEEEEcCC-C-cccee
Confidence 56899999998876544 247889999999999987 432 3 4888898887766554433 3 88899
Q ss_pred e--eCCEEEEEecC---------------------------CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEE
Q psy8285 259 W--NGNLLSCGTIG---------------------------GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 259 ~--~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 309 (507)
| +++.|+.++.+ ..|++||+.+++ ....+.. . .+..+.|+||| ++++
T Consensus 111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~-~~~~l~~-~-~~~~~~~spdg-~~~~ 186 (347)
T 2gop_A 111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE-VIEEFEK-P-RFSSGIWHRDK-IVVN 186 (347)
T ss_dssp ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE-EEEEEEE-E-TTCEEEEETTE-EEEE
T ss_pred ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe-EEeeecC-C-CcccccCCCCe-EEEE
Confidence 9 78888887642 568999998765 2133333 3 77889999999 7776
Q ss_pred Ee-CC-------cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccC-----CCCeEEEEeCCCCCeeee
Q psy8285 310 GS-NN-------TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGI-----CDQTVRLWNSMNGKEKCH 376 (507)
Q Consensus 310 ~~-d~-------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~ 376 (507)
+. +. ...+|.+.++ ....+..+ ..+..+ +|+|+.+++.+... ....|.+|| +++....
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d~~----~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l 257 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWEDG----KEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI 257 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEETT----EEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES
T ss_pred EecccccccccccccEEEeCCC----ceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEec
Confidence 65 22 4455555432 33344334 445444 99998887766421 124788888 5555444
Q ss_pred eecC-CCeEE-EEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcE-EEEec
Q psy8285 377 VKTD-SQVTS-ILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETI-SIWNC 453 (507)
Q Consensus 377 ~~~~-~~i~~-~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i-~iw~~ 453 (507)
...+ ..+.. +.|+ ++ .+++ +..++.+++| +.+++.. .+..+...|.+++|+| ..+++++.++.. .+|.+
T Consensus 258 ~~~~~~~~~~~~~~s-dg-~~~~--~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 258 LDEVDRGVGQAKIKD-GK-VYFT--LFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp STTCCSEEEEEEEET-TE-EEEE--EEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred cccCCcccCCccEEc-Cc-EEEE--EecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 4443 46775 8999 88 6666 6788999999 8766554 3444577899999999 677777777665 77777
Q ss_pred C
Q psy8285 454 F 454 (507)
Q Consensus 454 ~ 454 (507)
.
T Consensus 330 ~ 330 (347)
T 2gop_A 330 D 330 (347)
T ss_dssp S
T ss_pred C
Confidence 6
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=4.7e-17 Score=154.48 Aligned_cols=260 Identities=10% Similarity=0.006 Sum_probs=168.4
Q ss_pred EEECCCCceeEEEecCC--CCCCceEEEEEccCCCeEEEEeCCCC--cEEEEeCCCceeEEEEeecCccEEEEEe--eCC
Q psy8285 189 TWNTKTNKTQLLVEYPT--YDNAYISCVAWKPRTTDLAVTNTCTE--YIDLWHEQEERLIQKLRTHMHQVIAMCW--NGN 262 (507)
Q Consensus 189 iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~ 262 (507)
..|..+++....+.... .+...+..++|+|+|++|+.+...++ .|.+||+.+++.......+......+.| +++
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 44666666544333210 01122677899999999887733333 6888899888765443333222222555 799
Q ss_pred EEEEEecCCeEEEEECCCCCcCceeeecCCCceEE-------------------EEEcCCCCEEEEE-----e-CCcEEE
Q psy8285 263 LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCG-------------------LKWSPNGRYLASG-----S-NNTVKI 317 (507)
Q Consensus 263 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~-d~~i~i 317 (507)
.|+..+.++.|++||+.+++ .......+...... +.|+|+++.++.. . +..|++
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLE-EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp EEEEEETTTEEEEEETTTCC-EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred EEEEEEcCCcEEEEECCCCC-cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 99999999999999998765 23333323332222 3467777766553 2 378999
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEcc-CCCcEEEEEccCCC----CeEEEEeCCCCCeeeeeecC--CCeEEEEECC
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCP-WEPTLLATGGGICD----QTVRLWNSMNGKEKCHVKTD--SQVTSILWSE 390 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~ 390 (507)
||+.++ +. ..+..+...+..+.|+| ++..++++..+ .. ..|.+||+..++........ ..+..++|+|
T Consensus 173 ~d~~~g---~~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp 247 (396)
T 3c5m_A 173 VDIETG---EL-EVIHQDTAWLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP 247 (396)
T ss_dssp EETTTC---CE-EEEEEESSCEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT
T ss_pred EECCCC---cE-EeeccCCcccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCceeEeeccCCCccccceEECC
Confidence 999876 33 33334667889999999 77666665532 12 57999998766544333322 2478899999
Q ss_pred CCCeEEEEeccCC-----CeEEEEeCCCccEEEEeeccccceeEEEECC-CCCEEEEEe----------------CCCcE
Q psy8285 391 QYRELVTSHGKQD-----CSLKMWEYPRLHLIEELKIHQERILSAVLSP-DQTCVAAAS----------------ADETI 448 (507)
Q Consensus 391 ~~~~l~~~~g~~d-----~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~----------------~dg~i 448 (507)
+|++|+.. +.+ +.|++||+.+++...... ... .. +.|+| ||+++++++ .+..|
T Consensus 248 dg~~l~~~--~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i 322 (396)
T 3c5m_A 248 DGSAMAYV--SYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFL 322 (396)
T ss_dssp TSSCEEEE--EEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEE
T ss_pred CCCEEEEE--ecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcE
Confidence 99988874 222 459999998876543322 112 23 89999 999888765 34789
Q ss_pred EEEecCCCCcc
Q psy8285 449 SIWNCFPRDKK 459 (507)
Q Consensus 449 ~iw~~~~~~~~ 459 (507)
++||+.+++..
T Consensus 323 ~~~d~~~~~~~ 333 (396)
T 3c5m_A 323 YVLNTKAKSAQ 333 (396)
T ss_dssp EEEETTTTBCC
T ss_pred EEEecccCceE
Confidence 99999877653
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.73 E-value=4e-15 Score=152.07 Aligned_cols=266 Identities=9% Similarity=0.035 Sum_probs=183.7
Q ss_pred eEEEEECCCCceeEEEec---CCCCCCceEEEEEccCCCeEEEEeCCCC----cEEEEeCCCceeEEEEeecCccEEEEE
Q psy8285 186 SVYTWNTKTNKTQLLVEY---PTYDNAYISCVAWKPRTTDLAVTNTCTE----YIDLWHEQEERLIQKLRTHMHQVIAMC 258 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~ 258 (507)
.+++.+..+++...++.. ...+...+..++|||||++|+.+.+.+| .|++||+.+++.......+ ..+..++
T Consensus 99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~ 177 (710)
T 2xdw_A 99 VLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMA 177 (710)
T ss_dssp EEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEE
T ss_pred EEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEE
Confidence 455655555554444332 1113346889999999999998733333 8999999999877643322 2256688
Q ss_pred e--eCCEEEEEecCCe----------------EEEEECCCCCcCcee-eec--CCCceEEEEEcCCCCEEEEEe------
Q psy8285 259 W--NGNLLSCGTIGGN----------------ILHYDVRTHSDYPTA-ITR--EGDVVCGLKWSPNGRYLASGS------ 311 (507)
Q Consensus 259 ~--~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~------ 311 (507)
| |++.|+.++.++. |++|++.++...... ... +...+..+.|+|||++|+..+
T Consensus 178 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 257 (710)
T 2xdw_A 178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP 257 (710)
T ss_dssp ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred EEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCC
Confidence 8 7889999887765 999999876522122 222 345578899999999988765
Q ss_pred CCcEEEEEcCC------CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccC-CCCeEEEEeCCCCCe--eeeeecC-C
Q psy8285 312 NNTVKIWDFRQ------LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGI-CDQTVRLWNSMNGKE--KCHVKTD-S 381 (507)
Q Consensus 312 d~~i~i~d~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~--~~~~~~~-~ 381 (507)
+..|++||+.+ +. .....+..+...+.. .|+|+|..+++.+... ....|.+||+.+++. ...+..+ .
T Consensus 258 ~~~l~~~d~~~~~~~~~~~--~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 334 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGI--LKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE 334 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSS--CCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred ccEEEEEECcccccccCCc--cceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence 25799999976 31 134555556655554 5889998887776521 135799999988752 2333333 2
Q ss_pred --CeEEEEECCCCCeEEEEeccCCC--eEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEE-e---CCCcEEEEec
Q psy8285 382 --QVTSILWSEQYRELVTSHGKQDC--SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAA-S---ADETISIWNC 453 (507)
Q Consensus 382 --~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~---~dg~i~iw~~ 453 (507)
.+..++|++++..+++ ...++ .|++|++.+++.+..+..+.+.+..+.++|++..++.. + ..+.|+.||+
T Consensus 335 ~~~~~~~~~~~~~~lv~~--~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 335 KDVLEWVACVRSNFLVLC--YLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp SCEEEEEEEETTTEEEEE--EEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred CCeEEEEEEEcCCEEEEE--EEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 5778999977766666 56676 46777887788778888777889999999998766533 2 3578999999
Q ss_pred CCCC
Q psy8285 454 FPRD 457 (507)
Q Consensus 454 ~~~~ 457 (507)
.+++
T Consensus 413 ~tg~ 416 (710)
T 2xdw_A 413 TKEE 416 (710)
T ss_dssp TSSS
T ss_pred CCCc
Confidence 8876
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=5.3e-16 Score=157.66 Aligned_cols=269 Identities=10% Similarity=0.030 Sum_probs=164.5
Q ss_pred CCC-E-EEEEc--CCeEEEEECC--C-CceeEEEecCC-CCCCceEEEEEccCCCeEEEEeCCC----------CcEEEE
Q psy8285 175 YHD-T-LAVAL--DTSVYTWNTK--T-NKTQLLVEYPT-YDNAYISCVAWKPRTTDLAVTNTCT----------EYIDLW 236 (507)
Q Consensus 175 ~~~-~-~~~~~--~~~i~iw~~~--~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~d----------g~i~iw 236 (507)
||+ . ++.+. +..|+++++. + ++...+..... .+...+..++|+|||+.|+++ +.+ ..|++|
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~-~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCM-AEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEE-EEEECSSSTTCEEEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEE-EecccCCCCCCceeEEEEE
Confidence 776 5 66664 4567777775 3 54433332110 034578899999999999988 555 589999
Q ss_pred eCCC------ceeEEEEe-ecCccEEEEEe--eCCEEEEEecCC--------eEEEEECC-CCC--cCceeeecCCCceE
Q psy8285 237 HEQE------ERLIQKLR-THMHQVIAMCW--NGNLLSCGTIGG--------NILHYDVR-THS--DYPTAITREGDVVC 296 (507)
Q Consensus 237 d~~~------~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg--------~i~i~d~~-~~~--~~~~~~~~~~~~v~ 296 (507)
|+.+ ++. ..+. .+...+..++| ||+.|+.++.++ .|++||+. ++. ........+...+.
T Consensus 167 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~ 245 (662)
T 3azo_A 167 PLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA 245 (662)
T ss_dssp ETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred ECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence 9988 554 4444 55566777778 799998887553 79999998 441 23334445578899
Q ss_pred EEEEcCCCCEEEEEe-CC--cEEEEEcCCCCCCCCeeeecCCCCC---------eeEEEEccCCCcEEEEEccCCCCeEE
Q psy8285 297 GLKWSPNGRYLASGS-NN--TVKIWDFRQLDAKRPQVNNQCHLSA---------VKAIAWCPWEPTLLATGGGICDQTVR 364 (507)
Q Consensus 297 ~~~~~~~~~~l~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~~~~~~~~d~~i~ 364 (507)
.+.|+|||++++++. ++ .|++||+.++ +. ..+..+... +..++|+|++ .+++++. . +.++
T Consensus 246 ~~~~spdg~l~~~~~~~~~~~l~~~~~~~~---~~-~~l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~--~-~~~~ 317 (662)
T 3azo_A 246 QAEWAPDGSLIVATDRTGWWNLHRVDPATG---AA-TQLCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHG--K-GAAV 317 (662)
T ss_dssp EEEECTTSCEEEEECTTSSCEEEEECTTTC---CE-EESSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEB--S-SSCE
T ss_pred ceEECCCCeEEEEECCCCCeEEEEEECCCC---ce-eecccccccccCccccccCceEeEeCCC-EEEEEEE--c-CccE
Confidence 999999999766666 46 6666666554 22 222222211 4578888887 5666665 2 6667
Q ss_pred EE--eCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCC--eEEEEeCCCccEEEEeeccccceeEEEECCCCCEE
Q psy8285 365 LW--NSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDC--SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCV 439 (507)
Q Consensus 365 i~--d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 439 (507)
+| |+.+++ +..+..+ ..+..+ ++++++.++..+++.+. .|.++|+.+++.......+...+....+.+.....
T Consensus 318 l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 395 (662)
T 3azo_A 318 LGILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRT 395 (662)
T ss_dssp EEEEETTTTE-EEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEE
T ss_pred EEEEECCCCc-EEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEE
Confidence 77 666555 4555544 445555 25556555543344443 56667777776544434444334333444443334
Q ss_pred EEEeCCCcEEEEecCC
Q psy8285 440 AAASADETISIWNCFP 455 (507)
Q Consensus 440 ~s~~~dg~i~iw~~~~ 455 (507)
+.+..+..|..|-+.+
T Consensus 396 ~~~~dg~~i~~~~~~P 411 (662)
T 3azo_A 396 FTAPDGREIHAHIYPP 411 (662)
T ss_dssp EECTTSCEEEEEEECC
T ss_pred EEcCCCCEEEEEEECC
Confidence 4443344676666544
No 179
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.72 E-value=1.4e-14 Score=132.83 Aligned_cols=248 Identities=11% Similarity=0.051 Sum_probs=169.0
Q ss_pred cCCeEEEEECCCCceeEEEecCCC----CCCceEEEEEccCCCeEEEEeCC-CCcEEEEeCCCceeEEEEeecCccEEEE
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTY----DNAYISCVAWKPRTTDLAVTNTC-TEYIDLWHEQEERLIQKLRTHMHQVIAM 257 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 257 (507)
.++.|.+||..+++....+..... .......++|+|||+++++++.. ++.|.++|+.+++.+.++.... . ..+
T Consensus 107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~-~~~ 184 (386)
T 3sjl_D 107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C-YHI 184 (386)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E-EEE
T ss_pred CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c-cee
Confidence 356899999999998777665320 01245679999999999988322 6899999999999998886422 1 122
Q ss_pred Ee-eCCEEEEEecCCeEEEEECCCCCcCceeeecC----CCceE-EEEEc-CCCCEEEEEeCCcEEEEEcCCCCCCCCee
Q psy8285 258 CW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE----GDVVC-GLKWS-PNGRYLASGSNNTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 258 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~-~~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~ 330 (507)
.. ..+.+++.+.||.+.+.++............+ ...+. ...|. ++|++++...++.|++.|+..... +...
T Consensus 185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~ 263 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLP 263 (386)
T ss_dssp EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECC
T ss_pred ecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeec
Confidence 22 56778888889999999987632221111111 12221 23554 678766655569999999976411 1111
Q ss_pred eec----------CCCCCeeEEEEccCCCcEEEEEcc-------CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCC
Q psy8285 331 NNQ----------CHLSAVKAIAWCPWEPTLLATGGG-------ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYR 393 (507)
Q Consensus 331 ~~~----------~~~~~v~~~~~~~~~~~~~~~~~~-------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (507)
.+. -..+....++++|++++++++... ....+|.++|+.+++.+..+.....+.++++++|++
T Consensus 264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~ 343 (386)
T 3sjl_D 264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEK 343 (386)
T ss_dssp CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSS
T ss_pred ceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCC
Confidence 111 012344567889999888886531 012579999999999999998887889999999997
Q ss_pred -eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCC
Q psy8285 394 -ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPD 435 (507)
Q Consensus 394 -~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~ 435 (507)
+|+++ ...++.|.++|..+++.+.++... +.-+.+.+++|
T Consensus 344 ~~ly~t-n~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 344 PLLYAL-STGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp CEEEEE-ETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred eEEEEE-cCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 66664 456899999999999999988743 23345566665
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=1.6e-14 Score=132.82 Aligned_cols=275 Identities=5% Similarity=-0.074 Sum_probs=185.6
Q ss_pred CCeEEEEECCCCceeEEEecC--C-CCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe-
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYP--T-YDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW- 259 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~- 259 (507)
++.|.++|.++++........ + ........+.+. +..+.++...++.|.+||..+++.+..+. .......+++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 689999999998865433110 0 022346778774 34444443678999999999999988885 3456777888
Q ss_pred eCCEEEEEe-cCCeEEEEECCCCCcCceeeecCC-----CceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeee
Q psy8285 260 NGNLLSCGT-IGGNILHYDVRTHSDYPTAITREG-----DVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVN 331 (507)
Q Consensus 260 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~ 331 (507)
.+..+.++. .++.|.+||..+.+ ....+.... .....+++ .+++++++.. ++.|.++|+.++ +....
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~-~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~---~~~~~ 167 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYE-ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD---KVVDE 167 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTE-EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT---EEEEE
T ss_pred CCCeEEEEECCCCeEEEEECCCCe-EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC---eEEEE
Confidence 333555555 78999999998875 232333222 14456777 3444444442 589999999987 55555
Q ss_pred ecCCCCCeeEEEEccCCCcEEEEEccCC--------CCeEEEEeCCCCCeeeeeecC--CCeEEEEECCCCCeEEEEecc
Q psy8285 332 NQCHLSAVKAIAWCPWEPTLLATGGGIC--------DQTVRLWNSMNGKEKCHVKTD--SQVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 332 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~g~ 401 (507)
+.. ......+.++|+|+ +++++.+.. .+.|.++|..+++....+... .....++++|+++.|+++ .
T Consensus 168 i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~--~ 243 (328)
T 3dsm_A 168 LTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI--N 243 (328)
T ss_dssp EEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE--S
T ss_pred EEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE--c
Confidence 543 33457899999985 655554310 178999999999887776653 468999999999999884 2
Q ss_pred CCCeEEEEeCCCccEEEE--eeccccceeEEEECCC-CCEEEEE----eCCCcEEEEecCCCCcccceeecCCCcceEE
Q psy8285 402 QDCSLKMWEYPRLHLIEE--LKIHQERILSAVLSPD-QTCVAAA----SADETISIWNCFPRDKKRKARQVGSGSSLEF 473 (507)
Q Consensus 402 ~d~~i~v~d~~~~~~~~~--~~~~~~~i~~~~~s~~-~~~l~s~----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 473 (507)
+.|.+||..+++.... +..+......++++|+ +..+++. ..++.|.+|+.. ++.+..+........+.+
T Consensus 244 --~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 244 --NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp --SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred --cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 2899999988775321 1212356789999994 5555555 568899999998 777766654433333333
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=1.4e-13 Score=134.72 Aligned_cols=265 Identities=7% Similarity=0.016 Sum_probs=190.7
Q ss_pred EEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC--CceeEEEEeecCccEEEEE
Q psy8285 181 VALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ--EERLIQKLRTHMHQVIAMC 258 (507)
Q Consensus 181 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~ 258 (507)
...++.|.++|..+++....+.. ...+..+.|+|+|++++++ +.++.|.+||+. +++.+..+..... ...+.
T Consensus 173 ~~~~~~V~viD~~t~~v~~~i~~----g~~p~~v~~SpDGr~lyv~-~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia 246 (567)
T 1qks_A 173 LRDAGQIALIDGSTYEIKTVLDT----GYAVHISRLSASGRYLFVI-GRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIE 246 (567)
T ss_dssp ETTTTEEEEEETTTCCEEEEEEC----SSCEEEEEECTTSCEEEEE-ETTSEEEEEETTSSSCCEEEEEECCSE-EEEEE
T ss_pred eCCCCeEEEEECCCCeEEEEEeC----CCCccceEECCCCCEEEEE-cCCCeEEEEECCCCCCcEeEEEecCCC-CceeE
Confidence 34789999999999988776653 3457799999999999998 789999999996 7788777765433 34555
Q ss_pred e------eCCEEEEEec-CCeEEEEECCCCCcCceeeec----------C-CCceEEEEEcCCCCEEEEEe-C-CcEEEE
Q psy8285 259 W------NGNLLSCGTI-GGNILHYDVRTHSDYPTAITR----------E-GDVVCGLKWSPNGRYLASGS-N-NTVKIW 318 (507)
Q Consensus 259 ~------~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~----------~-~~~v~~~~~~~~~~~l~~~~-d-~~i~i~ 318 (507)
| |+++++++.. ++.|.++|..+.+ ....+.. | ...+..+..++++..++... + |.|.++
T Consensus 247 ~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v 325 (567)
T 1qks_A 247 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 325 (567)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence 5 4777776654 5899999988866 3332221 1 12577888999877766655 5 999999
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec-CC---CeEEEE-ECCCCC
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-DS---QVTSIL-WSEQYR 393 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~---~i~~~~-~s~~~~ 393 (507)
|....... .+..+ ........+.|+|++++++++... ++.|.++|+.+++.+..+.. .. +-.... ++|++.
T Consensus 326 d~~~~~~~-~v~~i-~~~~~~~d~~~~pdgr~~~va~~~--sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g 401 (567)
T 1qks_A 326 DYTDLNNL-KTTEI-SAERFLHDGGLDGSHRYFITAANA--RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG 401 (567)
T ss_dssp ETTCSSEE-EEEEE-ECCSSEEEEEECTTSCEEEEEEGG--GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred ecCCCccc-eeeee-eccccccCceECCCCCEEEEEeCC--CCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCC
Confidence 98764211 12222 234456788999999988888765 89999999999988777665 21 111222 588866
Q ss_pred eEEEEeccCCCeEEEEeCCC-------ccEEEEeeccccceeEEEECCCCCEEEEEeC-------CCcEEEEecCCC
Q psy8285 394 ELVTSHGKQDCSLKMWEYPR-------LHLIEELKIHQERILSAVLSPDQTCVAAASA-------DETISIWNCFPR 456 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-------dg~i~iw~~~~~ 456 (507)
.+.++....++.|.++|..+ .+.+.++......-..+..+|++++|.+... ..+|.++|+.+.
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 66543233568999999987 6778888765444355788999999987663 359999999877
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.71 E-value=3.2e-13 Score=122.55 Aligned_cols=269 Identities=10% Similarity=-0.001 Sum_probs=184.8
Q ss_pred ceeeeeeCCCC-EEEEEc-CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD-TLAVAL-DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.+.++++.+++ ++.+.. ++.|.+|+.. ++... ...+. ....+.++++.+++..+++. ..++.|..||.. ++.
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~-~~~~~~~i~~~~~g~l~v~~-~~~~~i~~~~~~-g~~- 89 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPT-PDAKVMCLTISSDGEVWFTE-NAANKIGRITKK-GII- 89 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSS-TTCCEEEEEECTTSCEEEEE-TTTTEEEEECTT-SCE-
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCc-ccCceeeEEECCCCCEEEeC-CCCCeEEEECCC-CcE-
Confidence 46678888987 555554 6899999988 65443 33332 45679999999999877776 668899999976 332
Q ss_pred EEEe--ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 245 QKLR--THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 245 ~~~~--~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
..+. .....+..+.+ +++++++...++.|.+||. ++.............+..+++.++++++++.. ++.|..||
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 168 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT 168 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence 2222 24456788888 4667776667889999998 44322222223455789999999998877766 48999999
Q ss_pred cCCCCCCCCeee-ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee-ee-cCCCeEEEEECCCCCeEE
Q psy8285 320 FRQLDAKRPQVN-NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH-VK-TDSQVTSILWSEQYRELV 396 (507)
Q Consensus 320 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~-~~~~i~~~~~s~~~~~l~ 396 (507)
. ++ +.... .......+..+++++++. ++++... ++.|..||. +++.... .. ....+.+++++++|+.++
T Consensus 169 ~-~g---~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~--~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v 240 (299)
T 2z2n_A 169 E-SG---DITEFKIPTPASGPVGITKGNDDA-LWFVEII--GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWF 240 (299)
T ss_dssp T-TC---CEEEEECSSTTCCEEEEEECTTSS-EEEEETT--TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred C-CC---cEEEeeCCCCCCcceeEEECCCCC-EEEEccC--CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEE
Confidence 8 44 22221 233455688999999885 6655543 789999998 6664332 22 125789999999998666
Q ss_pred EEeccCCCeEEEEeCCCccEEEEe--eccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 397 TSHGKQDCSLKMWEYPRLHLIEEL--KIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+ ...++.|..||. +++ +..+ ..+...+.++++ ++++++++.+ .+.+..++..+.
T Consensus 241 ~--~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 241 T--EWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp E--ETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred e--ccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 5 446789999998 443 2333 344567899999 8888776655 567777777654
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.70 E-value=1.1e-14 Score=130.25 Aligned_cols=239 Identities=11% Similarity=-0.003 Sum_probs=165.1
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCcee
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTA 287 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 287 (507)
...+++++++++.++++...++.|.+||..+.........+...+.++++ +++++++.. ++.|.+||..... ...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~--~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN--QTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC--CEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce--Eee
Confidence 67899999999866524267889999997655432222223345677888 466555554 8899999987653 222
Q ss_pred ee-cCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEE
Q psy8285 288 IT-REGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRL 365 (507)
Q Consensus 288 ~~-~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i 365 (507)
+. .....+..++++++++++++.. ++.|.+|+..+. ............+..++++|++. ++++... ++.|.+
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~---~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~--~~~i~~ 175 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK---TQTVLPFTGLNDPDGVAVDNSGN-VYVTDTD--NNRVVK 175 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC---SCEECCCCSCCSCCCEEECTTCC-EEEEEGG--GTEEEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc---eeEeeccccCCCceeEEEeCCCC-EEEEECC--CCEEEE
Confidence 22 2335688999999999777665 489999976543 22222222334678999999885 6666553 789999
Q ss_pred EeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeC
Q psy8285 366 WNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 366 ~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
||............. ..+..++++++|..+++ ...++.|.+|+............+...+.+++++++|+.+++...
T Consensus 176 ~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVT--EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEE--ETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred EecCCCceEeecccCCCCceEEEECCCCCEEEE--ECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence 998876654433333 67899999999966666 556789999998765443332233456899999999998888888
Q ss_pred CCcEEEEecCCCCcc
Q psy8285 445 DETISIWNCFPRDKK 459 (507)
Q Consensus 445 dg~i~iw~~~~~~~~ 459 (507)
++.|+++++...+..
T Consensus 254 ~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 254 NDRVVKLTSLEHHHH 268 (270)
T ss_dssp GTEEEEECCCGGGSC
T ss_pred CCEEEEEcCCCcccc
Confidence 999999998876544
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=1.9e-14 Score=130.48 Aligned_cols=231 Identities=10% Similarity=0.052 Sum_probs=165.1
Q ss_pred CCCceEEEEEccCCC-eEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc
Q psy8285 207 DNAYISCVAWKPRTT-DLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD 283 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~ 283 (507)
+.....+++|+|+++ .+++. ..++.|..||..++ ...+..+...+.++++ +++++++...++.|.+||..+++.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~-~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSD-VRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEE-GGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred CCccccCCeEeCCCCEEEEEe-CCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 455678999999998 45555 88999999999887 5666667778899999 577777766678999999976652
Q ss_pred Cceeeec----CCCceEEEEEcCCCCEEEEE----e--------------CCcEEEEEcCCCCCCCCeeeecCCCCCeeE
Q psy8285 284 YPTAITR----EGDVVCGLKWSPNGRYLASG----S--------------NNTVKIWDFRQLDAKRPQVNNQCHLSAVKA 341 (507)
Q Consensus 284 ~~~~~~~----~~~~v~~~~~~~~~~~l~~~----~--------------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 341 (507)
...... ....+..++++|+|+++++. . .+.|..++.. + .+..+..+......
T Consensus 103 -~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g----~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 103 -ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G----TLSAPIRDRVKPNG 176 (296)
T ss_dssp -EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S----CEEEEECCCSSEEE
T ss_pred -EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C----CEEEeecCCCCCcc
Confidence 221111 12345679999999988873 2 1345555443 2 33444456667889
Q ss_pred EEEccCCCcEEEEEccCCCCeEEEEeCC-CCCe---eeeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 342 IAWCPWEPTLLATGGGICDQTVRLWNSM-NGKE---KCHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~---~~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
++|+|+++.+ ++... ++.|.+||+. +++. ...+.. ...+..++++++|+.+++ . ++.|.+||.. ++.
T Consensus 177 i~~s~dg~~l-v~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~--~~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 177 LAFLPSGNLL-VSDTG--DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS--A--GDGVHVLTPD-GDE 248 (296)
T ss_dssp EEECTTSCEE-EEETT--TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE--E--TTEEEEECTT-SCE
T ss_pred EEECCCCCEE-EEeCC--CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE--c--CCeEEEECCC-CCE
Confidence 9999999766 66554 8899999987 4554 233311 245678999999986666 3 7889999976 778
Q ss_pred EEEeeccccceeEEEE-CCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 417 IEELKIHQERILSAVL-SPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 417 ~~~~~~~~~~i~~~~~-s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+..+..+.. +.+++| +|+++.|++++.++ +.-++..+.
T Consensus 249 ~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 249 LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred EEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 888877777 899999 68999998888763 444444443
No 185
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=3.6e-14 Score=128.01 Aligned_cols=232 Identities=9% Similarity=0.158 Sum_probs=162.1
Q ss_pred eeeeeeCCCC-EEEE-EcCCeEEEEECCCCceeEEEecCC---CCCCceEEEEEc-cCCCeEEEEeCC-CCcEEEEeCCC
Q psy8285 168 TSGLDWGYHD-TLAV-ALDTSVYTWNTKTNKTQLLVEYPT---YDNAYISCVAWK-PRTTDLAVTNTC-TEYIDLWHEQE 240 (507)
Q Consensus 168 i~~~~~s~~~-~~~~-~~~~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~-~~~~~l~~~~~~-dg~i~iwd~~~ 240 (507)
...+++++++ ++++ ..++.|.+|+.. ++....+...+ .+...+..+++. +++..+++. .. ++.|.+|| .+
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~-~~~~~~i~~~d-~~ 108 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE-RSPTHQIQIYN-QY 108 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE-CGGGCEEEEEC-TT
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEc-CCCCCEEEEEC-CC
Confidence 5578888887 4444 468899999987 54444333211 134578999995 666555544 33 88999999 56
Q ss_pred ceeEEEEee-cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeee--cCCCceEEEEEcCCCCEEEEEe-CCc
Q psy8285 241 ERLIQKLRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAIT--REGDVVCGLKWSPNGRYLASGS-NNT 314 (507)
Q Consensus 241 ~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-d~~ 314 (507)
++.+..+.. +...+..+++ +++++++...++.|.+||.... ....+. .+...+..++++++++++++.. ++.
T Consensus 109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 109 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC--EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence 676666643 3456788888 5777777777899999997542 233332 3445689999999999777766 599
Q ss_pred EEEEEcCCCCCCCCeeeecCC--CCCeeEEEEccCCCcEEEEEccCCCC-eEEEEeCCCCCeeeeeecC---CCeEEEEE
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCH--LSAVKAIAWCPWEPTLLATGGGICDQ-TVRLWNSMNGKEKCHVKTD---SQVTSILW 388 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~d~-~i~i~d~~~~~~~~~~~~~---~~i~~~~~ 388 (507)
|++||... ..+..+..+ ...+..++++|+| .++++... ++ .|.+||. +++.+..+..+ ..+..+++
T Consensus 187 i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 187 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNG-EILIADNH--NNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp EEEEETTC----CEEEEESCTTTSCSEEEEEECTTC-CEEEEECS--SSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred EEEEcCCC----CEEEEEccCCccCCCcEEEECCCC-CEEEEeCC--CCEEEEEECC-CCCEEEEEcccCCCCcceeEEE
Confidence 99999753 344444333 3678999999998 56666543 65 9999995 56666666544 24789999
Q ss_pred CCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 389 SEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 389 s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
+|+|+.+++ . .++.|++|++....
T Consensus 259 ~~~g~l~vs--~-~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 259 MDDGSVVLA--S-KDYRLYIYRYVQLA 282 (286)
T ss_dssp ETTTEEEEE--E-TTTEEEEEECSCCC
T ss_pred CCCCcEEEE--C-CCCeEEEEEccccc
Confidence 999986665 3 58999999986543
No 186
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=2.6e-14 Score=131.60 Aligned_cols=234 Identities=11% Similarity=0.057 Sum_probs=165.2
Q ss_pred ceeeeeeCCCC-EEEEEcCC-------------------------eEEEEECCCCceeEEEecCCCCCCceEEEEEccCC
Q psy8285 167 YTSGLDWGYHD-TLAVALDT-------------------------SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRT 220 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~-------------------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 220 (507)
.+.++++++++ ++++...+ .|.+||..+++...... .+ +-.....++++|+|
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~-~~~~p~gia~d~~g 102 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KN-LFYLPHGLSIDTDG 102 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TT-TCSSEEEEEECTTS
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CC-ccCCceEEEECCCC
Confidence 36789999988 55554333 69999998888765433 22 45678999999999
Q ss_pred CeEEEEeCCCCcEEEEeCCCce-eEEEEe---------ecCccEEEEEee---CCEEEEEe-cCCeEEEEECCCCCcCce
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEER-LIQKLR---------THMHQVIAMCWN---GNLLSCGT-IGGNILHYDVRTHSDYPT 286 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~~~~~---~~~l~~~~-~dg~i~i~d~~~~~~~~~ 286 (507)
+.+++. ..++.|++||..... .+..+. .+......++++ +.++++.+ .++.|++|+... . ...
T Consensus 103 ~l~v~d-~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~-~~~ 179 (329)
T 3fvz_A 103 NYWVTD-VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-K-FVT 179 (329)
T ss_dssp CEEEEE-TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-C-EEE
T ss_pred CEEEEE-CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-C-EEE
Confidence 977666 888999999976542 455542 334467888884 55666665 589999999543 3 233
Q ss_pred eeec----------CCCceEEEEEcCC-CCEEEEEe-CCcEEEEEcCCCCCCCCeeee--cCCCCCeeEEEEccCCCcEE
Q psy8285 287 AITR----------EGDVVCGLKWSPN-GRYLASGS-NNTVKIWDFRQLDAKRPQVNN--QCHLSAVKAIAWCPWEPTLL 352 (507)
Q Consensus 287 ~~~~----------~~~~v~~~~~~~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~ 352 (507)
.+.. +-.....++++|+ ++++++.. ++.|++||..++ +.+..+ ..+...+..++|+| + .++
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g-~~~ 254 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-G-FLF 254 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-T-EEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-C-EEE
Confidence 3321 1234789999999 55555554 499999999866 555555 34566788999999 3 344
Q ss_pred EEEcc-----CCCCeEEEEeCCCCCeeeeee---cC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 353 ATGGG-----ICDQTVRLWNSMNGKEKCHVK---TD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 353 ~~~~~-----~~d~~i~i~d~~~~~~~~~~~---~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
.+.+. ..+..|++||..+++.+..+. .+ ..+..++++|+|..+++ ...++.|++|++.
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyva--d~~~~~I~~~~~~ 321 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIG--DAHTNTVWKFTLT 321 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEE--ESSSCCEEEEEEE
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEE--ECCCCEEEEEeCC
Confidence 43321 124589999999999888874 22 56899999999966666 6778999999975
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=1.5e-14 Score=133.61 Aligned_cols=242 Identities=10% Similarity=0.006 Sum_probs=171.0
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCc
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYP 285 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~ 285 (507)
...+.++.|++++..++.. ..++.++.| .++....+..+...+.+++| ++++++++..++.|.+||..+++ ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-~~ 79 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPI-ISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IK 79 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCC-CCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EE
T ss_pred ccccceeeecCCccceeEE-eecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-EE
Confidence 3457888999998877777 788899999 45666677777777889999 57777788888999999998765 22
Q ss_pred eeeecCCCceEEEEEcCCCCEEEEEe-C----CcEEEEEcCCCCCCCCeeee--cCCCCCeeEEEEccCCCcEEEEEcc-
Q psy8285 286 TAITREGDVVCGLKWSPNGRYLASGS-N----NTVKIWDFRQLDAKRPQVNN--QCHLSAVKAIAWCPWEPTLLATGGG- 357 (507)
Q Consensus 286 ~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~- 357 (507)
.....+...+.+++++|+++++++.. + +.|.+||.+.+ .....+ ..+...+..++++|++. ++++...
T Consensus 80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~ 155 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD---NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRG 155 (333)
T ss_dssp EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC---SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCC
T ss_pred EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC---EEEEEEccCccCCcccceEECCCCC-EEEEeccc
Confidence 22334567899999999999887766 3 48999998875 322122 12446789999999985 5554431
Q ss_pred ---CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC-ccEEEE--------eecccc
Q psy8285 358 ---ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR-LHLIEE--------LKIHQE 425 (507)
Q Consensus 358 ---~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~-~~~~~~--------~~~~~~ 425 (507)
...+.|..+|..+++..........+..++|+|+++.|+++ ...++.|.+||..+ +..+.. +.++ .
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~-~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~ 233 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT-ETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-E 233 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE-EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S
T ss_pred cccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEE-eCCCCeEEEEEecCCCcCcccccceEEEecCCC-C
Confidence 01256777776665554433333568899999999977664 45678999999863 332221 1122 3
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccc
Q psy8285 426 RILSAVLSPDQTCVAAASADETISIWNCFPRDKKRK 461 (507)
Q Consensus 426 ~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 461 (507)
.+..++++++|+++++...++.|.+|+.. ++....
T Consensus 234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~ 268 (333)
T 2dg1_A 234 GPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQ 268 (333)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEE
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEE
Confidence 67889999999988888888999999984 444333
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.66 E-value=2e-14 Score=133.62 Aligned_cols=223 Identities=11% Similarity=0.113 Sum_probs=150.1
Q ss_pred CCceEEEEEccCCCeEEEEe--------CCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC---C--e
Q psy8285 208 NAYISCVAWKPRTTDLAVTN--------TCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG---G--N 272 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~--------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d---g--~ 272 (507)
...+..+.+ +|++++... ..++.|.+||+.+++... + ..+..+.| ||+.|+..+.+ + .
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 345677777 888887651 125679999998876543 3 45677788 78888887754 3 4
Q ss_pred EEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C---------------------------CcEEEEEcCCCC
Q psy8285 273 ILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N---------------------------NTVKIWDFRQLD 324 (507)
Q Consensus 273 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---------------------------~~i~i~d~~~~~ 324 (507)
|.+|++.+++ ...+..+.. +..++|+|||+.|+.++ + ..|++||+.++
T Consensus 87 l~~~~~~~g~--~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~- 162 (347)
T 2gop_A 87 IWVADLETLS--SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE- 162 (347)
T ss_dssp EEEEETTTTE--EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT-
T ss_pred EEEEECCCCc--eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC-
Confidence 7888887754 223333334 89999999999888875 2 46899999876
Q ss_pred CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC-------CCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 325 AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC-------DQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 325 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
+.+..+.. . .+..+.|+|++ +++++.... ...|.++| +++....... ..+..+ +|+|++|+.
T Consensus 163 --~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~ 231 (347)
T 2gop_A 163 --EVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILL 231 (347)
T ss_dssp --EEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEE
T ss_pred --eEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEE
Confidence 33244443 3 78899999999 555443211 12455555 5544333333 444444 999999987
Q ss_pred EeccC------CCeEEEEeCCCccEEEEeeccccceeE-EEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 398 SHGKQ------DCSLKMWEYPRLHLIEELKIHQERILS-AVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 398 ~~g~~------d~~i~v~d~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
.+... ...|.+|| +++.......+...+.. +.|+ |+ ++++++.++.+++| +.+++
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS
T ss_pred EEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc
Confidence 42111 24788888 56655555566778886 9999 88 88999999999999 87443
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.66 E-value=6.3e-15 Score=150.15 Aligned_cols=262 Identities=9% Similarity=-0.039 Sum_probs=175.3
Q ss_pred CeEEEEECCCCceeEEEecC----CCCCCceEEEEEccCCCeEEEEe----CCCCcEEEEeCCCceeEEEEeecCccE--
Q psy8285 185 TSVYTWNTKTNKTQLLVEYP----TYDNAYISCVAWKPRTTDLAVTN----TCTEYIDLWHEQEERLIQKLRTHMHQV-- 254 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~v-- 254 (507)
+.|++.+...++...+.... + |...+..++|||||++|+.+. +.+..|++||+.+++.+. ..+...+
T Consensus 94 ~~l~~~~~~~~~~~~l~d~~~~a~~-~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~ 170 (695)
T 2bkl_A 94 AILYWRQGESGQEKVLLDPNGWSKD-GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKY 170 (695)
T ss_dssp CEEEEEESTTSCCEEEECGGGSSSS-SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTT
T ss_pred EEEEEEcCCCCCcEEEEchHHhccC-CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccc
Confidence 34566666566655555421 2 455789999999999999652 334689999999987641 1111222
Q ss_pred EEEEe--eCCEEEEEecCCe-------------EEEEECCCCCcCce-ee--ecCCCceEEEEEcCCCCEEEEEe-CC--
Q psy8285 255 IAMCW--NGNLLSCGTIGGN-------------ILHYDVRTHSDYPT-AI--TREGDVVCGLKWSPNGRYLASGS-NN-- 313 (507)
Q Consensus 255 ~~~~~--~~~~l~~~~~dg~-------------i~i~d~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~l~~~~-d~-- 313 (507)
..++| |++.|+.++.+.. |++|++.++..... .. ..+...+..+.|+|||++|+..+ ++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 56788 7889999988766 99999987652212 22 23445788999999999988776 34
Q ss_pred --cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEcc-CCCCeEEEEeCCCCCe---eeeeecC--CCeEE
Q psy8285 314 --TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG-ICDQTVRLWNSMNGKE---KCHVKTD--SQVTS 385 (507)
Q Consensus 314 --~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~---~~~~~~~--~~i~~ 385 (507)
.|++++...+ ....+..+...+....+ +++. +++.+.. ..++.|.+||+.+++. ...+... ..+..
T Consensus 251 ~~~l~~~~~~~~----~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~ 324 (695)
T 2bkl_A 251 ENDVYWKRPGEK----DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLS 324 (695)
T ss_dssp EEEEEEECTTCS----SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEE
T ss_pred ceEEEEEcCCCC----ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEE
Confidence 6666655433 34444445556666666 6776 6665531 1258999999988763 3333332 35778
Q ss_pred EEECCCCCeEEEEeccCCCeEEEEeCC-CccEEEEeecc-ccceeEEEECCCCCEEEEE----eCCCcEEEEecCCCCc
Q psy8285 386 ILWSEQYRELVTSHGKQDCSLKMWEYP-RLHLIEELKIH-QERILSAVLSPDQTCVAAA----SADETISIWNCFPRDK 458 (507)
Q Consensus 386 ~~~s~~~~~l~~~~g~~d~~i~v~d~~-~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~----~~dg~i~iw~~~~~~~ 458 (507)
++|+ ++..+++ ...|+..++|.+. +++.+..+..+ .+.+..++++|++..++.. ...++|++||+.+++.
T Consensus 325 ~~~~-~~~lv~~--~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 325 VSIV-GGHLSLE--YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEE-TTEEEEE--EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEE-CCEEEEE--EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 8888 5555555 6778887777554 45566666654 6678889999999877632 2347899999988764
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.66 E-value=5.1e-14 Score=143.92 Aligned_cols=240 Identities=10% Similarity=-0.010 Sum_probs=167.2
Q ss_pred cceeeeeeCCCC-EEEEE-c-CC----eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCc------
Q psy8285 166 FYTSGLDWGYHD-TLAVA-L-DT----SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEY------ 232 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~~~~-~-~~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~------ 232 (507)
..+..++||||+ .++.+ . +| .|++||+.+++...... ....+..++|+|||+.|+.+ +.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~----~~~~~~~~~wspDg~~l~~~-~~~~~~~~~~~ 199 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL----ERVKFSCMAWTHDGKGMFYN-AYPQQDGKSDG 199 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE----EEECSCCEEECTTSSEEEEE-ECCCCSSCCSS
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc----cCcccceEEEEeCCCEEEEE-EECCccccccc
Confidence 357789999998 55543 2 22 89999999998765432 22236789999999999988 66655
Q ss_pred ----------EEEEeCCCcee--EEEEee--cCccEEEEEe--eCCEEEEEec-----CCeEEEEECCC------CCcCc
Q psy8285 233 ----------IDLWHEQEERL--IQKLRT--HMHQVIAMCW--NGNLLSCGTI-----GGNILHYDVRT------HSDYP 285 (507)
Q Consensus 233 ----------i~iwd~~~~~~--~~~~~~--~~~~v~~~~~--~~~~l~~~~~-----dg~i~i~d~~~------~~~~~ 285 (507)
|++|++.+++. ...+.. +...+..+.| |+++|+..+. +..|++||+.+ +....
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 99999988652 222232 4455777888 7888887765 56899999986 43235
Q ss_pred eeeecCCCceEEEEEcCCCCEEEEEeC-----CcEEEEEcCCCCCCCCeeeecCCCC--CeeEEEEccCCCcEEEEEccC
Q psy8285 286 TAITREGDVVCGLKWSPNGRYLASGSN-----NTVKIWDFRQLDAKRPQVNNQCHLS--AVKAIAWCPWEPTLLATGGGI 358 (507)
Q Consensus 286 ~~~~~~~~~v~~~~~~~~~~~l~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~ 358 (507)
..+..+...+.. .|+|+|+.|+..++ ..|.+||+.++.. .....+..+.. .+..+.|++++ .++++...
T Consensus 280 ~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~- 355 (710)
T 2xdw_A 280 VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLH- 355 (710)
T ss_dssp EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCEEEEEEEETTT-EEEEEEEE-
T ss_pred EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-ccceeccCCCCCCeEEEEEEEcCC-EEEEEEEE-
Confidence 556666665554 58899988777652 3699999877521 02344444443 67889998655 67666654
Q ss_pred CCC--eEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEE--eccCCCeEEEEeCCCcc
Q psy8285 359 CDQ--TVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTS--HGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 359 ~d~--~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~--~g~~d~~i~v~d~~~~~ 415 (507)
++ .|.+||+.+++.+..+..+ ..+..+.++|+++.++.+ +....+.|+.||+.+++
T Consensus 356 -~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 356 -DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp -TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred -CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 65 5777888778877766655 568889999999877753 23356789999998876
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=1.2e-13 Score=127.01 Aligned_cols=245 Identities=10% Similarity=-0.004 Sum_probs=173.2
Q ss_pred eeeeCCCCEEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 170 GLDWGYHDTLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 170 ~~~~s~~~~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
.+.+..+.++.+. .++.|.+||..+++....+. .......+++++++ .++++...++.|.+||..+++....+.
T Consensus 48 ~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~----~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 48 SMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT----GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp EEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE----CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred EEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC----CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 3555555555554 57899999999998866654 44678999999998 566662479999999999998887776
Q ss_pred ecC-----ccEEEEEeeCCEEEEEe--cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C--------
Q psy8285 249 THM-----HQVIAMCWNGNLLSCGT--IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N-------- 312 (507)
Q Consensus 249 ~~~-----~~v~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-------- 312 (507)
... .....+++++..+.++. .++.|.++|+.+.+ ....+.. ......+.++|+|++++++. +
T Consensus 123 ~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~-~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDK-VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp CTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTE-EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred cCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCe-EEEEEEc-CCCccceEEcCCCCEEEEECCCccCCcccc
Confidence 433 13445666766666665 48899999999875 3333332 33456789999999777765 3
Q ss_pred --CcEEEEEcCCCCCCCCeeeecCC-CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee--eec-CCCeEEE
Q psy8285 313 --NTVKIWDFRQLDAKRPQVNNQCH-LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH--VKT-DSQVTSI 386 (507)
Q Consensus 313 --~~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~--~~~-~~~i~~~ 386 (507)
+.|.++|..++ +....+... ......++++|+++.++++ ++.|.+||..+++.... +.. ......+
T Consensus 201 ~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~-----~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi 272 (328)
T 3dsm_A 201 EAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWI-----NNDIWRMPVEADRVPVRPFLEFRDTKYYGL 272 (328)
T ss_dssp CCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEE-----SSSEEEEETTCSSCCSSCSBCCCSSCEEEE
T ss_pred CCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEE-----ccEEEEEECCCCceeeeeeecCCCCceEEE
Confidence 57999999876 444444322 3468899999998777663 33899999988875421 222 2568899
Q ss_pred EECCCCCeEEEEec----cCCCeEEEEeCCCccEEEEeeccccceeEEEE
Q psy8285 387 LWSEQYRELVTSHG----KQDCSLKMWEYPRLHLIEELKIHQERILSAVL 432 (507)
Q Consensus 387 ~~s~~~~~l~~~~g----~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 432 (507)
+++|++..|+++ . ..++.|.+||.. ++.+.++..... -..++|
T Consensus 273 ~vdp~~g~lyva-~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~-P~~~~~ 319 (328)
T 3dsm_A 273 TVNPNNGEVYVA-DAIDYQQQGIVYRYSPQ-GKLIDEFYVGII-PGAFCW 319 (328)
T ss_dssp EECTTTCCEEEE-ECTTSSSEEEEEEECTT-CCEEEEEEEEES-EEEEEE
T ss_pred EEcCCCCeEEEE-cccccccCCEEEEECCC-CCEEEEEEeccC-cceEEE
Confidence 999966666654 4 568899999988 888888764332 344554
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.65 E-value=3.3e-13 Score=123.78 Aligned_cols=277 Identities=10% Similarity=0.079 Sum_probs=185.4
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC---------CCCcEEEEeCCCceeEEEEeecC---
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT---------CTEYIDLWHEQEERLIQKLRTHM--- 251 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~dg~i~iwd~~~~~~~~~~~~~~--- 251 (507)
++.|.++|..+++....+.. ...+ . ++++|+|++++++.. .++.|.+||..+++.+..+....
T Consensus 58 ~~~V~ViD~~t~~v~~~I~v---G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r 132 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDG---GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR 132 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEE---CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred CCEEEEEECCCCeEEEEEEC---CCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc
Confidence 67999999999998777665 3334 4 999999999998821 35789999999999988876422
Q ss_pred ----ccEEEEEe--eCCEEEEEec--CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q psy8285 252 ----HQVIAMCW--NGNLLSCGTI--GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 252 ----~~v~~~~~--~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 322 (507)
.....+.+ ||++++++.. ++.|.++|+.+.+ ....+.-. + +...+....+.+++.+ ||.+.+.++..
T Consensus 133 ~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~-vv~tI~v~-g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 133 FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVP-D--CYHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECC-S--EEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc-EEEEEECC-C--cceeecCCCceeEEECCCCCEEEEECCC
Confidence 12334555 8998888864 6899999999876 33333221 1 1122222334444444 67777777765
Q ss_pred CCCCCCeeeec----CCCCCe-eEEEEc-cCCCcEEEEEccCCCCeEEEEeCCCCC--eeeeee--------c---CCCe
Q psy8285 323 LDAKRPQVNNQ----CHLSAV-KAIAWC-PWEPTLLATGGGICDQTVRLWNSMNGK--EKCHVK--------T---DSQV 383 (507)
Q Consensus 323 ~~~~~~~~~~~----~~~~~v-~~~~~~-~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~--------~---~~~i 383 (507)
.. +...... ....++ ....|. ++| .++.... ++++++.|+.++. ....+. . ....
T Consensus 209 ~g--~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~vs~---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~ 282 (386)
T 3sjl_D 209 EG--TPEITHTEVFHPEDEFLINHPAYSQKAG-RLVWPTY---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 282 (386)
T ss_dssp SS--CCEEEECCCCSCTTSCBCSCCEEETTTT-EEEEEBT---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred CC--eEEEeecceeccccccccccceeEcCCC-cEEEEeC---CCEEEEEECCCCcceeecceeccccccccccccCCCc
Confidence 21 1111111 111222 124564 566 4544444 7899999997664 333332 0 1233
Q ss_pred EEEEECCCCCeEEEEecc--------CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC-EEEEEe-CCCcEEEEec
Q psy8285 384 TSILWSEQYRELVTSHGK--------QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT-CVAAAS-ADETISIWNC 453 (507)
Q Consensus 384 ~~~~~s~~~~~l~~~~g~--------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~dg~i~iw~~ 453 (507)
..++++|+++.++++... ..+.|.++|+.+++.+..+... ..++++++++|++ +|+++. .++.|.++|.
T Consensus 283 q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 283 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred ceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 457779999999885221 1357999999999999988753 4688999999997 666654 5899999999
Q ss_pred CCCCcccceeecCCCcceEEeec
Q psy8285 454 FPRDKKRKARQVGSGSSLEFAIL 476 (507)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ 476 (507)
.+++.+...+..+...++.++++
T Consensus 362 ~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 362 ESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp TTCCEEEEECCCCSSCCEEEECC
T ss_pred CCCcEEEEecCCCCCceeEECCc
Confidence 99999998888887777777654
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.65 E-value=3.2e-14 Score=144.94 Aligned_cols=180 Identities=10% Similarity=-0.056 Sum_probs=119.1
Q ss_pred eEEEEECCCCce--eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC----cEEEEeCCCceeEEEEeecCccEEEEEe
Q psy8285 186 SVYTWNTKTNKT--QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE----YIDLWHEQEERLIQKLRTHMHQVIAMCW 259 (507)
Q Consensus 186 ~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 259 (507)
.|++|++.+++. ..+...+. +...+..+.|+|+|++|+++ +.++ .|.+|+..+++ ...+..+...+....+
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~-~~~~~~~~~~SpDG~~l~~~-~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~ 279 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTG-DPTTFLQSDLSRDGKYLFVY-ILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA 279 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCC-CTTCEEEEEECTTSCCEEEE-EEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE
T ss_pred EEEEEECCCCchhceEEEecCC-CCEEEEEEEECCCCCEEEEE-EeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe
Confidence 499999988763 34444443 55678999999999999987 5444 67777765554 3444455555555555
Q ss_pred -eCCEEEEEec----CCeEEEEECCCCCc-CceeeecC--CCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC-CCCCCCe
Q psy8285 260 -NGNLLSCGTI----GGNILHYDVRTHSD-YPTAITRE--GDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ-LDAKRPQ 329 (507)
Q Consensus 260 -~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~~~~~--~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~-~~~~~~~ 329 (507)
+++ ++..+. ++.|.+||+.++.. ....+..+ ...+..++|+ ++.++++.. |+..++|.+.. + ...
T Consensus 280 ~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g---~~~ 354 (695)
T 2bkl_A 280 WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG---KPV 354 (695)
T ss_dssp ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC---CEE
T ss_pred cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC---Cee
Confidence 566 544443 57899999987642 12333333 4567888888 666777776 57777776552 3 344
Q ss_pred eeecCC-CCCeeEEEEccCCCcEEEEEc-cCCCCeEEEEeCCCCCe
Q psy8285 330 VNNQCH-LSAVKAIAWCPWEPTLLATGG-GICDQTVRLWNSMNGKE 373 (507)
Q Consensus 330 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~ 373 (507)
..+..+ .+.+..+.++|++..++++.+ ....++|++||+.+++.
T Consensus 355 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 355 RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 444434 567888899999877765553 22347899999988874
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.65 E-value=1.3e-13 Score=122.81 Aligned_cols=209 Identities=10% Similarity=-0.015 Sum_probs=157.8
Q ss_pred CCeEEEEeCCCCcEEEEeCCCceeEEEEeecC-ccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecC-CCce
Q psy8285 220 TTDLAVTNTCTEYIDLWHEQEERLIQKLRTHM-HQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE-GDVV 295 (507)
Q Consensus 220 ~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v 295 (507)
++.|+++ +.++.|.+||.++++.+..+..+. ..+.++.+ +|++++ +.++.|..||. +++ ....+..+ ...+
T Consensus 5 ~~~lv~~-~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-~~W~~~~~~~~~~ 79 (276)
T 3no2_A 5 QHLLVGG-SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-ELWNIAAPAGCEM 79 (276)
T ss_dssp CEEEEEC-TTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-EEEEEECCTTCEE
T ss_pred CcEEEee-CCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-EEEEEcCCCCccc
Confidence 4567777 999999999999999999998765 45677777 788887 44778999999 555 34444443 3578
Q ss_pred EEEEEcCCCCEEEEEeC--CcEEEEEcCCCCCCCCeeeec------CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEe
Q psy8285 296 CGLKWSPNGRYLASGSN--NTVKIWDFRQLDAKRPQVNNQ------CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~d--~~i~i~d~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
.++.+.++|+++++.++ +.|..+|. ++ +.+..+. .+......+++.++|..+ ++... ++.|..||
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~G---k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l-v~~~~--~~~v~~~d 152 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KG---EVLSKTEFETGIERPHAQFRQINKNKKGNYL-VPLFA--TSEVREIA 152 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TS---CEEEEEEECCSCSSGGGSCSCCEECTTSCEE-EEETT--TTEEEEEC
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CC---CEEEEEeccCCCCcccccccCceECCCCCEE-EEecC--CCEEEEEC
Confidence 89999999999998763 66666665 33 3443332 122245566788888644 44443 89999999
Q ss_pred CCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccc------cceeEEEECCCCCEEEE
Q psy8285 368 SMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ------ERILSAVLSPDQTCVAA 441 (507)
Q Consensus 368 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~s 441 (507)
.. |+.+..+.....+.++...++|+.+++ +..++.|..+|..+++.+.++..+. ..+..+...++|..+++
T Consensus 153 ~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~--~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~ 229 (276)
T 3no2_A 153 PN-GQLLNSVKLSGTPFSSAFLDNGDCLVA--CGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYIC 229 (276)
T ss_dssp TT-SCEEEEEECSSCCCEEEECTTSCEEEE--CBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEE
T ss_pred CC-CCEEEEEECCCCccceeEcCCCCEEEE--eCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEE
Confidence 87 999999887766778888999999988 6777899999999999999886542 22778888999998887
Q ss_pred Ee
Q psy8285 442 AS 443 (507)
Q Consensus 442 ~~ 443 (507)
..
T Consensus 230 ~~ 231 (276)
T 3no2_A 230 NW 231 (276)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.64 E-value=2e-12 Score=120.41 Aligned_cols=231 Identities=10% Similarity=0.000 Sum_probs=154.6
Q ss_pred CCeEEEEECCCCceeEEEecCCC-C---CCceEEEEEccCCCeEEEEeCC-CCcEEEEeCCCceeEEE-EeecCccEEEE
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTY-D---NAYISCVAWKPRTTDLAVTNTC-TEYIDLWHEQEERLIQK-LRTHMHQVIAM 257 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~-~---~~~v~~~~~~~~~~~l~~~~~~-dg~i~iwd~~~~~~~~~-~~~~~~~v~~~ 257 (507)
++.|.+||..+.+........+. . ......+.|+|+|++|++++.. ++.|.++| .+++.+.. +.. ...+...
T Consensus 96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~~~~~~ 173 (373)
T 2mad_H 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PTCYHIH 173 (373)
T ss_pred CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-CceEEEE
Confidence 67899999988877666554310 0 1235689999999999998323 57899999 99988777 543 2222222
Q ss_pred EeeCCEEEEEecCCeEEEEECCCCCcCceeee-----cCCCc-eEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCee
Q psy8285 258 CWNGNLLSCGTIGGNILHYDVRTHSDYPTAIT-----REGDV-VCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 258 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~ 330 (507)
.+..+.+++.+.||.+.++|. +++.. .... ....+ .....+.+++..++..+ .+.+.+.|+..... ..+.
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~ 250 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGGAA-GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKA 250 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCcEE-EEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEee
Confidence 224566777888999999999 65422 1111 11122 12345666665544444 58999999865411 1111
Q ss_pred eecC----------CCCCeeEEEEccCCCcEEEEEccC-------CCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCC
Q psy8285 331 NNQC----------HLSAVKAIAWCPWEPTLLATGGGI-------CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYR 393 (507)
Q Consensus 331 ~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (507)
.+.. .......+.++|++++++++.... .++.|.++|+.+++.+..+........+.|+|||+
T Consensus 251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~ 330 (373)
T 2mad_H 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGG 330 (373)
T ss_pred eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCC
Confidence 1110 122344578999998888765310 14689999999999999998777899999999999
Q ss_pred -eEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 394 -ELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 394 -~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
.++++ ...++.|.++|+.+++.+..+
T Consensus 331 ~~l~v~-~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 331 PDLYAL-SAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEE-cCCCCeEEEEECCCCCEEeee
Confidence 56663 335899999999999998874
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.62 E-value=6e-12 Score=117.19 Aligned_cols=257 Identities=8% Similarity=-0.033 Sum_probs=174.0
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC---------CCCcEEEEeCCCceeEEEEeec------
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT---------CTEYIDLWHEQEERLIQKLRTH------ 250 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~dg~i~iwd~~~~~~~~~~~~~------ 250 (507)
.|.++|..+++....+.. ...+ .++++||+++++++.. .++.|.+||..+.+.+..+...
T Consensus 48 ~v~v~D~~t~~~~~~i~~---g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~ 122 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNG---GFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD 122 (373)
T ss_pred EEEEEECCCCeEEEEecC---CCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc
Confidence 889999999887654442 2333 9999999999999832 3678999999998887776532
Q ss_pred -CccEEEEEe--eCCEEEEEec--CCeEEEEECCCCCcCcee-eecCCCceEEEEEcCCCCE-EEEEe-CCcEEEEEcCC
Q psy8285 251 -MHQVIAMCW--NGNLLSCGTI--GGNILHYDVRTHSDYPTA-ITREGDVVCGLKWSPNGRY-LASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 251 -~~~v~~~~~--~~~~l~~~~~--dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-l~~~~-d~~i~i~d~~~ 322 (507)
......+.+ |+++|+++.. ++.|.++| .+++ .... +. ... ++.+.|+++. +++.+ ||.+.++|. +
T Consensus 123 ~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-~~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~ 195 (373)
T 2mad_H 123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-SDDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A 195 (373)
T ss_pred cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-EEeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence 112335555 8999998874 47899999 8765 3333 22 111 2455566543 33333 799999999 6
Q ss_pred CCCCCCeeeec-----CCCCC-eeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--eeeeeec-----------CCCe
Q psy8285 323 LDAKRPQVNNQ-----CHLSA-VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EKCHVKT-----------DSQV 383 (507)
Q Consensus 323 ~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~-----------~~~i 383 (507)
+ +...... ....+ .....+.+++..++.... .+.+.+.|+..+. .+..+.. ....
T Consensus 196 g---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 269 (373)
T 2mad_H 196 G---GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGW 269 (373)
T ss_pred C---cEEEEEeccccccCCcceeecceeEecCCEEEEEcC---CceEEEEeccCCcceEeeeeeecCCcccccceecCce
Confidence 5 3331111 11112 233566777766666554 7899999987653 2222221 1223
Q ss_pred EEEEECCCCCeEEEEecc--------CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC-EEEEEe-CCCcEEEEec
Q psy8285 384 TSILWSEQYRELVTSHGK--------QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT-CVAAAS-ADETISIWNC 453 (507)
Q Consensus 384 ~~~~~s~~~~~l~~~~g~--------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~dg~i~iw~~ 453 (507)
..+.++|+++.++++... ..+.|.++|..+++.+..+.. .....+++|+|||+ .++++. .++.|.++|+
T Consensus 270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 447899999988884211 135899999999999998864 33578999999999 777777 5899999999
Q ss_pred CCCCcccc
Q psy8285 454 FPRDKKRK 461 (507)
Q Consensus 454 ~~~~~~~~ 461 (507)
.+.+....
T Consensus 349 ~t~~vv~~ 356 (373)
T 2mad_H 349 GAGDQDQS 356 (373)
T ss_pred CCCCEEee
Confidence 99888766
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.62 E-value=4.6e-12 Score=114.92 Aligned_cols=268 Identities=10% Similarity=0.019 Sum_probs=181.7
Q ss_pred ceeeeeeCCCC-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
...++.+.+++ ++.+. .++.|.+|+.. ++... ...+. ....+.++++.+++..+++. ..++.|..||.. ++..
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~-~~~~~~~i~~~~~g~l~v~~-~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPT-PDAKVMCLIVSSLGDIWFTE-NGANKIGKLSKK-GGFT 95 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSS-TTCCEEEEEECTTSCEEEEE-TTTTEEEEECTT-SCEE
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCC-CCCcceeEEECCCCCEEEEe-cCCCeEEEECCC-CCeE
Confidence 35578888888 55555 57899999987 66543 33333 45679999999999877766 668899999987 5543
Q ss_pred EE-EeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEc
Q psy8285 245 QK-LRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 245 ~~-~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~ 320 (507)
.. .......+..+++ +++++++...++.|..+|.. ++............+..+++.++++++++.. ++.|..+|.
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN 174 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence 22 2223456788888 46777666667899999987 4322122233446788999999999666665 488999998
Q ss_pred CCCCCCCCee-eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee-eec-CCCeEEEEECCCCCeEEE
Q psy8285 321 RQLDAKRPQV-NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH-VKT-DSQVTSILWSEQYRELVT 397 (507)
Q Consensus 321 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~-~~~i~~~~~s~~~~~l~~ 397 (507)
.+ +... ....+...+..+++++++ .++++... .+.|..||. +++.... +.. ...+.+++++++|+..++
T Consensus 175 -~g---~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~--~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 175 -TG---KLEEYPLPTNAAAPVGITSGNDG-ALWFVEIM--GNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp -TC---CEEEEECSSTTCCEEEEEECTTS-SEEEEETT--TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred -CC---cEEEeeCCCCCCCcceEEECCCC-CEEEEccC--CCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe
Confidence 43 2222 122344578899999988 56665543 678999998 5554332 222 256899999999986666
Q ss_pred EeccCCCeEEEEeCCCccEE-EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 398 SHGKQDCSLKMWEYPRLHLI-EELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 398 ~~g~~d~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
...++.|..||. +++.. ..+......+.+++++++|+++++.. . .|..++.
T Consensus 247 --~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 247 --EWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp --ETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred --ccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 445789999998 44432 22333345688999999998666554 4 6666664
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.62 E-value=2.1e-13 Score=121.80 Aligned_cols=236 Identities=10% Similarity=-0.021 Sum_probs=158.6
Q ss_pred ceeeeeeCCCC-EEE-E-EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 167 YTSGLDWGYHD-TLA-V-ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~-~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
....+++++++ +++ + ..++.|.+|+..+..... ... . +...+.+++++++++.+++. . ++.|.+||......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~-~-~~~~p~~i~~~~~g~l~v~~-~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPF-N-GLYQPQGLAVDGAGTVYVTD-F-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CCC-C-SCCSCCCEEECTTCCEEEEE-T-TTEEEEECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-Eee-C-CcCCcceeEECCCCCEEEEc-C-CCEEEEEeCCCceE
Confidence 45578898887 554 4 467899999976554322 111 1 34567899999998855555 5 88999999876543
Q ss_pred EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEc
Q psy8285 244 IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~ 320 (507)
..........+..+++ +++++++...++.|.+|+..+.. ...........+.+++++++++++++.. ++.|.+||.
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~ 178 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA 178 (270)
T ss_dssp EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECT
T ss_pred eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEec
Confidence 3222223356788888 57777776778899999765433 1111122234577899999999776665 489999998
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEe
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~ 399 (507)
... ........+...+..++++++| .++++... ++.|.+||............. ..+.+++++++|+.+++
T Consensus 179 ~~~---~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~--~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~-- 250 (270)
T 1rwi_B 179 ESN---NQVVLPFTDITAPWGIAVDEAG-TVYVTEHN--TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVA-- 250 (270)
T ss_dssp TTC---CEEECCCSSCCSEEEEEECTTC-CEEEEETT--TSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEE--
T ss_pred CCC---ceEeecccCCCCceEEEECCCC-CEEEEECC--CCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEE--
Confidence 764 2222222333678899999998 67766654 789999998765443322222 56899999999986666
Q ss_pred ccCCCeEEEEeCCCccE
Q psy8285 400 GKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 400 g~~d~~i~v~d~~~~~~ 416 (507)
...++.|++++....+.
T Consensus 251 ~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 251 DRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EGGGTEEEEECCCGGGS
T ss_pred ECCCCEEEEEcCCCccc
Confidence 67789999999876543
No 199
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.61 E-value=1.1e-12 Score=122.76 Aligned_cols=234 Identities=11% Similarity=0.064 Sum_probs=161.4
Q ss_pred cCCeEEEEECCCCceeEEEecCCCC----CCceEEEEEccCCCeEEEEeCC-CCcEEEEeCCCceeEEEEeecCccEEEE
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTYD----NAYISCVAWKPRTTDLAVTNTC-TEYIDLWHEQEERLIQKLRTHMHQVIAM 257 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 257 (507)
.++.|.++|..+++....+.+.+.. ......+.|+|||++++++... ++.|.+.|+.+++.+..+..... ..+
T Consensus 147 ~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~ 224 (426)
T 3c75_H 147 RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHI 224 (426)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEE
T ss_pred CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eee
Confidence 4678999999999987777664100 1235678999999999998323 67899999999999888774221 222
Q ss_pred Ee-eCCEEEEEecCCeEEEEECCCCCcCcee----eecCCCce-EEEEEcCCCCEEEEEeC-CcEEEEEcCCCCC--CCC
Q psy8285 258 CW-NGNLLSCGTIGGNILHYDVRTHSDYPTA----ITREGDVV-CGLKWSPNGRYLASGSN-NTVKIWDFRQLDA--KRP 328 (507)
Q Consensus 258 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~--~~~ 328 (507)
.. ....+++.+.||.+.+.+..+++ .... +.....++ ..+.|.+++..++..+. +.+.+.|+..... ...
T Consensus 225 ~p~g~~~~v~~~~dG~~~~V~~~~~~-v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~ 303 (426)
T 3c75_H 225 FPASPTVFYMNCRDGSLARVDFADGE-TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP 303 (426)
T ss_dssp EEEETTEEEEEETTSSEEEEECCTTC-CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC
T ss_pred ccCCCcEEEEEcCCCCEEEEECCCCc-EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee
Confidence 22 35677778889998888885443 2211 11111111 23567899888777774 8999999865310 001
Q ss_pred eeeec-------CCCCCeeEEEEccCCCcEEEEEccC-------CCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCC-
Q psy8285 329 QVNNQ-------CHLSAVKAIAWCPWEPTLLATGGGI-------CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYR- 393 (507)
Q Consensus 329 ~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~- 393 (507)
..... ........++++|++++++++.... .++.|.++|+.+.+.+..+........+.|+|||+
T Consensus 304 ~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~ 383 (426)
T 3c75_H 304 IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEP 383 (426)
T ss_dssp EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSC
T ss_pred eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCE
Confidence 10000 0112223478999998888875310 14589999999999999998777789999999999
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
+++++ ...++.|.++|+.+++.+.++
T Consensus 384 ~lyv~-n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 384 LLYAL-SAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEE-ETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEE-cCCCCeEEEEECCCCCEEEEe
Confidence 77774 346899999999999999887
No 200
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=1.4e-12 Score=118.11 Aligned_cols=228 Identities=13% Similarity=0.103 Sum_probs=158.0
Q ss_pred eeeeeeCCCC--EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYHD--TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
..+++|+|++ ++.++ .++.|+.|+..++ . ..+.. +...+.+++++|+|+.+++. ..++.|.+||..+++..
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~~---~~~~~~~l~~~~dg~l~v~~-~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEMH---PSHHQNGHCLNKQGHLIACS-HGLRRLERQREPGGEWE 103 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEES---SCSSEEEEEECTTCCEEEEE-TTTTEEEEECSTTCCEE
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEEC---CCCCcceeeECCCCcEEEEe-cCCCeEEEEcCCCCcEE
Confidence 4579999986 45444 6889999999877 3 33333 56779999999999877766 67789999999887755
Q ss_pred EEEeec----CccEEEEEe--eCCEEEEE----e-------------cCCeEEEEECCCCCcCceeeecCCCceEEEEEc
Q psy8285 245 QKLRTH----MHQVIAMCW--NGNLLSCG----T-------------IGGNILHYDVRTHSDYPTAITREGDVVCGLKWS 301 (507)
Q Consensus 245 ~~~~~~----~~~v~~~~~--~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 301 (507)
...... ...+..+++ +|+++++. + ..+.|..++.. ++ ...+..+......++|+
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCCSSEEEEEEC
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCCCCCccEEEC
Confidence 443322 123456777 57777763 2 13456666654 22 34445566678899999
Q ss_pred CCCCEEEEEe-CCcEEEEEcC-CCCCCCC---eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee
Q psy8285 302 PNGRYLASGS-NNTVKIWDFR-QLDAKRP---QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 376 (507)
Q Consensus 302 ~~~~~l~~~~-d~~i~i~d~~-~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 376 (507)
|+++.+++.. ++.|++||+. .+ .. ...+..+...+..++++++|. ++++. ++.|.+||.. ++.+..
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g---~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~----~~~v~~~~~~-g~~~~~ 251 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARG---ETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA----GDGVHVLTPD-GDELGR 251 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSS---CEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE----TTEEEEECTT-SCEEEE
T ss_pred CCCCEEEEeCCCCeEEEEEECCCC---cCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc----CCeEEEECCC-CCEEEE
Confidence 9999985555 4899999997 33 22 122233455677899999995 55543 5789999986 777777
Q ss_pred eecCCCeEEEEE-CCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 377 VKTDSQVTSILW-SEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 377 ~~~~~~i~~~~~-s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
+..+..+.+++| .|+++.|++ ++. +.+.-++..+.+.
T Consensus 252 ~~~~~~~~~~~f~~~d~~~L~v--~t~-~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 252 VLTPQTTSNLCFGGPEGRTLYM--TVS-TEFWSIETNVRGL 289 (296)
T ss_dssp EECSSCCCEEEEESTTSCEEEE--EET-TEEEEEECSCCBC
T ss_pred EECCCCceeEEEECCCCCEEEE--EcC-CeEEEEEcccccc
Confidence 776644899999 689998888 333 4566667665543
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.59 E-value=1.1e-12 Score=120.09 Aligned_cols=237 Identities=7% Similarity=-0.010 Sum_probs=163.2
Q ss_pred CCCceEEEEEccCCCeEEE-------EeCCCCcEEEEeCCCceeEEEEe----ecCccEEEEEee-C-CEEEEEecCCeE
Q psy8285 207 DNAYISCVAWKPRTTDLAV-------TNTCTEYIDLWHEQEERLIQKLR----THMHQVIAMCWN-G-NLLSCGTIGGNI 273 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~-------~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~-~-~~l~~~~~dg~i 273 (507)
.-....+++|++++..+++ . ..++.|.+||..+++...... ++...+..+.++ . ..|..++..+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~-~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNG-KPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETT-EECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCC-CCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCE
Confidence 3445789999999987777 4 568899999988776543322 144568888883 2 455555555589
Q ss_pred EEEECCCCCcCcee-eec----CCCceEEEEEcCCCCEEEEEe-C---------------CcEEEEEcCCCCCCCCeeee
Q psy8285 274 LHYDVRTHSDYPTA-ITR----EGDVVCGLKWSPNGRYLASGS-N---------------NTVKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 274 ~i~d~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~-d---------------~~i~i~d~~~~~~~~~~~~~ 332 (507)
.+||.. ++ .... ... ....+.+++++++|+++++.. + +.|..||.. + + ...+
T Consensus 95 ~~~d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g---~-~~~~ 167 (314)
T 1pjx_A 95 LVVQTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G---Q-MIQV 167 (314)
T ss_dssp EEEETT-SC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S---C-EEEE
T ss_pred EEEeCC-CC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C---C-EEEe
Confidence 999987 44 2211 111 123578999999998877765 3 356666654 3 2 2222
Q ss_pred cCCCCCeeEEEEc----cCCCcEEEEEccCCCCeEEEEeCC-CCCe-----eeeeecC--CCeEEEEECCCCCeEEEEec
Q psy8285 333 QCHLSAVKAIAWC----PWEPTLLATGGGICDQTVRLWNSM-NGKE-----KCHVKTD--SQVTSILWSEQYRELVTSHG 400 (507)
Q Consensus 333 ~~~~~~v~~~~~~----~~~~~~~~~~~~~~d~~i~i~d~~-~~~~-----~~~~~~~--~~i~~~~~s~~~~~l~~~~g 400 (507)
..+......++|+ |+++.++++... ++.|.+||.. +++. ...+..+ ..+..++++++|+.+++ .
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~ 243 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETP--TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA--N 243 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETT--TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE--E
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECC--CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEE--E
Confidence 2234456889999 998767776654 7899999976 4432 2222222 45788999999987777 4
Q ss_pred cCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEE-EEeCCCcEEEEecCC
Q psy8285 401 KQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVA-AASADETISIWNCFP 455 (507)
Q Consensus 401 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-s~~~dg~i~iw~~~~ 455 (507)
..++.|.+||..+++.+..+..+...+.+++|+|+++.|+ +...++.|..|++..
T Consensus 244 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 244 WGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred cCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 5678999999887777777766667899999999999554 445568899999864
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.57 E-value=1.8e-12 Score=121.17 Aligned_cols=274 Identities=11% Similarity=0.059 Sum_probs=182.5
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC---------CCCcEEEEeCCCceeEEEEeec-----
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT---------CTEYIDLWHEQEERLIQKLRTH----- 250 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~dg~i~iwd~~~~~~~~~~~~~----- 250 (507)
+.|.++|..+++....+.. ...+ .++++||+++++++.. .++.|.++|..+++.+..+.-.
T Consensus 99 ~~VsVID~~t~~vv~~I~v---G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~ 173 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDG---GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF 173 (426)
T ss_dssp EEEEEEETTTTEEEEEEEE---CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CeEEEEECCCCEEEEEEEC---CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc
Confidence 6999999999998877776 3344 8999999999999832 3678999999999988877532
Q ss_pred --CccEEEEEe--eCCEEEEEec--CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC-CEEEEEe-CCcEEEEEcCC
Q psy8285 251 --MHQVIAMCW--NGNLLSCGTI--GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG-RYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 251 --~~~v~~~~~--~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~ 322 (507)
......+.+ |+++++++.. ++.|.+.|+.+.+ ....+.-.. . ....|++ +.+++.+ ||.+.+.+...
T Consensus 174 ~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k-vv~~I~v~g-~---~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 174 LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT-FDRMLDVPD-C---YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCS-E---EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe-EEEEEEcCC-c---eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 112234455 7899888874 5789999999876 333333211 1 2233332 3333333 57766667643
Q ss_pred CCCCCCee----eecCCCCC-eeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee--eeeec-----------CCCeE
Q psy8285 323 LDAKRPQV----NNQCHLSA-VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK--CHVKT-----------DSQVT 384 (507)
Q Consensus 323 ~~~~~~~~----~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~-----------~~~i~ 384 (507)
+ +... .+.....+ ...+.+.+++..++++.. .+.+.+.|....... ..+.. .....
T Consensus 249 ~---~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~---~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~ 322 (426)
T 3c75_H 249 G---ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY---TGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ 322 (426)
T ss_dssp T---CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT---TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred C---cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC---CCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence 3 2221 11111111 124567899888877764 789999998665421 11110 11122
Q ss_pred EEEECCCCCeEEEEecc--------CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC-EEEEEe-CCCcEEEEecC
Q psy8285 385 SILWSEQYRELVTSHGK--------QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT-CVAAAS-ADETISIWNCF 454 (507)
Q Consensus 385 ~~~~s~~~~~l~~~~g~--------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~dg~i~iw~~~ 454 (507)
.++++|+++.++++... ..+.|.++|..+.+.+..+.... ....+.|+|||+ +++++. .++.|.++|+.
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 36899999988884211 13579999999999999987533 578999999999 888888 58999999999
Q ss_pred CCCcccceeecCCCcceEEee
Q psy8285 455 PRDKKRKARQVGSGSSLEFAI 475 (507)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~ 475 (507)
+.+.+..+...+....+...+
T Consensus 402 t~kvv~tI~~vG~~P~~i~~~ 422 (426)
T 3c75_H 402 TGEELRSVDQLGRGPQIITTH 422 (426)
T ss_dssp TCCEEEEECCCSSSCCEEECC
T ss_pred CCCEEEEecCCCCCCcEEEcC
Confidence 999887764444444444433
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.57 E-value=1.3e-12 Score=134.15 Aligned_cols=264 Identities=10% Similarity=0.013 Sum_probs=167.3
Q ss_pred eEEEEECC---CCceeEEEecC---CCCCCceEEEEEccCCCeEEEEeCCCC----cEEEEeCCCceeEEEEeecCccEE
Q psy8285 186 SVYTWNTK---TNKTQLLVEYP---TYDNAYISCVAWKPRTTDLAVTNTCTE----YIDLWHEQEERLIQKLRTHMHQVI 255 (507)
Q Consensus 186 ~i~iw~~~---~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~ 255 (507)
.+++.+.. .++...+++.. ..+...+..++|||||++|+.+.+.+| .|++||+.+++.+.... +...+.
T Consensus 134 ~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~ 212 (741)
T 1yr2_A 134 QLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFS 212 (741)
T ss_dssp EEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESC
T ss_pred EEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceec
Confidence 44555554 44444443321 103346889999999999998733333 59999999988765321 222234
Q ss_pred EEEe--eCCEEEEEecCCe--------------EEEEECCCCCcCcee-eec--CCCceEEEEEcCCCCEEEEEe-CC--
Q psy8285 256 AMCW--NGNLLSCGTIGGN--------------ILHYDVRTHSDYPTA-ITR--EGDVVCGLKWSPNGRYLASGS-NN-- 313 (507)
Q Consensus 256 ~~~~--~~~~l~~~~~dg~--------------i~i~d~~~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~-d~-- 313 (507)
.++| | +.|+.+..++. |++|++.+....... ... +...+..+.|+|||++|+..+ ++
T Consensus 213 ~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 291 (741)
T 1yr2_A 213 GLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD 291 (741)
T ss_dssp CCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTC
T ss_pred cEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCC
Confidence 6778 6 88888876554 889999776522222 222 223588999999999888766 33
Q ss_pred ---cEEEEEcCCCCCCCC-eeeecCCCCCeeEEEEccCCCcEEEEEccC-CCCeEEEEeCCCC--CeeeeeecC-CCeEE
Q psy8285 314 ---TVKIWDFRQLDAKRP-QVNNQCHLSAVKAIAWCPWEPTLLATGGGI-CDQTVRLWNSMNG--KEKCHVKTD-SQVTS 385 (507)
Q Consensus 314 ---~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~--~~~~~~~~~-~~i~~ 385 (507)
.|++||+.++. .. ...+..+...+.... +|+++.+++..... .++.|.+||+.++ +....+... ..+..
T Consensus 292 ~~~~l~~~d~~~~~--~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~ 368 (741)
T 1yr2_A 292 PVNTVHVARVTNGK--IGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES 368 (741)
T ss_dssp SCCEEEEEEEETTE--ECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred CcceEEEEECCCCC--CcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence 89999997641 12 444444555555553 48888877766421 2467999999875 233333333 34667
Q ss_pred EEECCCCCeEEEEeccCCCeEEEEeCC-CccEEEEeec-cccceeEEEECCCCCEEEEE----eCCCcEEEEecCCCC
Q psy8285 386 ILWSEQYRELVTSHGKQDCSLKMWEYP-RLHLIEELKI-HQERILSAVLSPDQTCVAAA----SADETISIWNCFPRD 457 (507)
Q Consensus 386 ~~~s~~~~~l~~~~g~~d~~i~v~d~~-~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~----~~dg~i~iw~~~~~~ 457 (507)
+.++ ++..+++ ...++..+||.+. +++....+.. +...+..+.++|+++.|+.. ...++|++||+.+++
T Consensus 369 ~~~~-~~~lv~~--~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 369 VGIA-GNRLFAS--YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEE-BTEEEEE--EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEE-CCEEEEE--EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7777 4444555 5678876666543 4556666654 35678899999998866532 234789999998765
No 204
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=2.1e-11 Score=110.44 Aligned_cols=233 Identities=9% Similarity=-0.024 Sum_probs=165.1
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE-eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL-RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD 283 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~ 283 (507)
+...+.++++.++|..+++. ..++.|.+||.. ++..... ......+.++++ ++.++++...++.|..||... +.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~-~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~ 89 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQ-HKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-II 89 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEE-TTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE
T ss_pred cCCCccceEECCCCCEEEEe-cCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cE
Confidence 55679999999999877766 668899999988 5443322 234567888888 567776666688899999862 21
Q ss_pred CceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCee-eecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 284 YPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQV-NNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 284 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
...........+.++++.++++++++.. ++.|..||. ++ +... ........+..+++.+++ .++++... ++
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~--~~ 162 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG---KIREYELPNKGSYPSFITLGSDN-ALWFTENQ--NN 162 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC---CEEEEECSSTTCCEEEEEECTTS-CEEEEETT--TT
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CC---CEEEecCCCCCCCCceEEEcCCC-CEEEEeCC--CC
Confidence 1111222455789999999998887776 489999998 43 2221 222345678999999998 56665543 78
Q ss_pred eEEEEeCCCCCeeee-eec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEE-eeccccceeEEEECCCCCE
Q psy8285 362 TVRLWNSMNGKEKCH-VKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEE-LKIHQERILSAVLSPDQTC 438 (507)
Q Consensus 362 ~i~i~d~~~~~~~~~-~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~ 438 (507)
.|..||. +++.... ... ...+..++++++|+.+++ ...++.|.+||. +++.... +..+...+.+++++++|+.
T Consensus 163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFV--EIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDL 238 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCE
T ss_pred EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE--ccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCE
Confidence 9999998 6665432 222 256889999999987666 455789999998 6654322 2334567899999999987
Q ss_pred EEEEeCCCcEEEEec
Q psy8285 439 VAAASADETISIWNC 453 (507)
Q Consensus 439 l~s~~~dg~i~iw~~ 453 (507)
+++...++.|..|+.
T Consensus 239 ~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 239 WFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEETTTTEEEEEET
T ss_pred EEeccCCceEEEECC
Confidence 776667889999998
No 205
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=2.1e-12 Score=115.12 Aligned_cols=233 Identities=11% Similarity=0.005 Sum_probs=163.7
Q ss_pred CCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecC-
Q psy8285 174 GYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHM- 251 (507)
Q Consensus 174 s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~- 251 (507)
+|++ +++++.++.|++||.++++....+... ....+.++.++|+|+.++ + .++.|..||. +++.+..+..+.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~--~~~~~~~~~~~pdG~ilv-s--~~~~V~~~d~-~G~~~W~~~~~~~ 76 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLE--KGWECNSVAATKAGEILF-S--YSKGAKMITR-DGRELWNIAAPAG 76 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECC--TTCCCCEEEECTTSCEEE-E--CBSEEEEECT-TSCEEEEEECCTT
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCC--ccCCCcCeEECCCCCEEE-e--CCCCEEEECC-CCCEEEEEcCCCC
Confidence 4566 444568999999999999987766642 114688999999998887 4 4778999998 899988888653
Q ss_pred ccEEEEEe--eCCEEEEEec-CCeEEEEECCCCCcCceeee------cCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q psy8285 252 HQVIAMCW--NGNLLSCGTI-GGNILHYDVRTHSDYPTAIT------REGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR 321 (507)
Q Consensus 252 ~~v~~~~~--~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~ 321 (507)
..+.++.+ +++.+++.+. ++.+..+|.. ++ ....+. .+......+++.++|+++++.. ++.|..||.+
T Consensus 77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk-~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 77 CEMQTARILPDGNALVAWCGHPSTILEVNMK-GE-VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp CEEEEEEECTTSCEEEEEESTTEEEEEECTT-SC-EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred ccccccEECCCCCEEEEecCCCCEEEEEeCC-CC-EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 46777777 7999988887 7778777763 33 222221 1112344567899999999888 5999999988
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-------CCeEEEEECCCCCe
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-------SQVTSILWSEQYRE 394 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~i~~~~~s~~~~~ 394 (507)
+ +.+..+... ..+..+...+++..+++ +.. ++.|..+|..+++.+..+... ..+..++..++|..
T Consensus 155 -G---~~~w~~~~~-~~~~~~~~~~~g~~~v~-~~~--~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 155 -G---QLLNSVKLS-GTPFSSAFLDNGDCLVA-CGD--AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp -S---CEEEEEECS-SCCCEEEECTTSCEEEE-CBT--TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred -C---CEEEEEECC-CCccceeEcCCCCEEEE-eCC--CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 6 667666543 45667888888854544 443 778999999999998888642 13788888899988
Q ss_pred EEEEeccCC------CeEEEEeC-CCccEEEEeec
Q psy8285 395 LVTSHGKQD------CSLKMWEY-PRLHLIEELKI 422 (507)
Q Consensus 395 l~~~~g~~d------~~i~v~d~-~~~~~~~~~~~ 422 (507)
+++...+.. +..+++++ ++++.+.++..
T Consensus 227 ~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 227 YICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp EEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred EEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 877321111 23345554 45666666543
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.55 E-value=2.5e-11 Score=109.83 Aligned_cols=226 Identities=10% Similarity=0.133 Sum_probs=156.7
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY 284 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 284 (507)
...-..+..|+|++..|+.+...++.|..||..+++. ..+ .....+.++.+ ++++++ +. ++.|.+||..+++.
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~- 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSA- 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEE-
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcE-
Confidence 3445678999997766666547789999999987765 223 34567888998 577544 44 56899999987642
Q ss_pred ceeeec----CCCceEEEEEcCCCCEEEEEe-C---------CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCc
Q psy8285 285 PTAITR----EGDVVCGLKWSPNGRYLASGS-N---------NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPT 350 (507)
Q Consensus 285 ~~~~~~----~~~~v~~~~~~~~~~~l~~~~-d---------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 350 (507)
...... ....++.++++|+|+++++.. . ..-.+|.+... ...............++|+|+++.
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~---g~~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD---HHVKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT---SCEEEEEEEESBEEEEEECTTSCE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC---CCEEEEeeccccccceEEcCCCCE
Confidence 111111 124578899999999777653 1 23455655432 122233334455789999999988
Q ss_pred EEEEEccCCCCeEEEEeC--CCCCee-----eeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec
Q psy8285 351 LLATGGGICDQTVRLWNS--MNGKEK-----CHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI 422 (507)
Q Consensus 351 ~~~~~~~~~d~~i~i~d~--~~~~~~-----~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~ 422 (507)
++++... ++.|..||+ .+++.. ..+.. ...+..++++++|++.++ ....+.|.+||..+++.+..+..
T Consensus 163 lyv~~~~--~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva--~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 163 FYYIDSL--SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA--CYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EEEEEGG--GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE--EETTTEEEEECTTTCCEEEEEEC
T ss_pred EEEecCC--CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE--EcCCCEEEEEcCCCceEEEEEEC
Confidence 8777764 789999987 455432 12222 246789999999987766 45677899999998999988887
Q ss_pred cccceeEEEEC-CCCCEEEEEeC
Q psy8285 423 HQERILSAVLS-PDQTCVAAASA 444 (507)
Q Consensus 423 ~~~~i~~~~~s-~~~~~l~s~~~ 444 (507)
+...+++++|. |+++.|+.++.
T Consensus 239 p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 239 PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCceEEEEeCCCCCEEEEEcC
Confidence 77789999998 88887765553
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.55 E-value=2.6e-12 Score=131.85 Aligned_cols=183 Identities=11% Similarity=0.079 Sum_probs=119.7
Q ss_pred CCeEEEEECCCCce--eEEEecCCCCCCceEEEEEccCCCeEEEEeCC-----CCcEEEEeCCCc--eeEEEEeecCccE
Q psy8285 184 DTSVYTWNTKTNKT--QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC-----TEYIDLWHEQEE--RLIQKLRTHMHQV 254 (507)
Q Consensus 184 ~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----dg~i~iwd~~~~--~~~~~~~~~~~~v 254 (507)
...|++|++.++.. ..+..... +...+..+.|+|||++|+.. +. ...|++||+.++ +....+..+....
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~-~~~~~~~~~~SpDG~~l~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 319 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPE-LPKRGHGASVSSDGRWVVIT-SSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ 319 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTT-CTTCEEEEEECTTSCEEEEE-EECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred CCEEEEEECCCCchhCEEEeccCC-CCeEEEEEEECCCCCEEEEE-EEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence 45688999877653 23333332 33468999999999999987 43 348999999876 3145555544444
Q ss_pred EEEEe-eCCEEEEEecC----CeEEEEECCCCC-cCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC-CCCCC
Q psy8285 255 IAMCW-NGNLLSCGTIG----GNILHYDVRTHS-DYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR-QLDAK 326 (507)
Q Consensus 255 ~~~~~-~~~~l~~~~~d----g~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~-~~~~~ 326 (507)
....+ +++.|+..+.+ +.|.+||+.+.. .....+..+...+..++++ ++.++++.. ++..+||.+. .+
T Consensus 320 ~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g--- 395 (741)
T 1yr2_A 320 WDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG--- 395 (741)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS---
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC---
Confidence 43333 88888887764 459999988742 2233444455567778887 555666666 5766666554 23
Q ss_pred CCeeeecC-CCCCeeEEEEccCCCcEEEEEc-cCCCCeEEEEeCCCCC
Q psy8285 327 RPQVNNQC-HLSAVKAIAWCPWEPTLLATGG-GICDQTVRLWNSMNGK 372 (507)
Q Consensus 327 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~ 372 (507)
.....+.. ..+.+..+.++|++..++++.+ ....++|++||+.+++
T Consensus 396 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 396 KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 34444443 3567889999999877765543 2235789999998876
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.54 E-value=1.2e-11 Score=116.81 Aligned_cols=231 Identities=9% Similarity=-0.004 Sum_probs=160.4
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCC--eEEEEECCCCCcC
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGG--NILHYDVRTHSDY 284 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg--~i~i~d~~~~~~~ 284 (507)
.....++|+++++.+++. ..++.|++||..++...........+ . ++| +++.|+++..++ .|.+++......
T Consensus 131 ~~P~~la~d~~g~lyv~d-~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~- 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQ-RDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA- 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEE-TTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-
T ss_pred CCceEEEEeCCCCEEEEe-cCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCce-
Confidence 457899999999866665 77899999999887766555543332 2 666 678888888766 788888876542
Q ss_pred ceee----ecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeee-----cCCCCCe-e-EEEEccCCCcEE
Q psy8285 285 PTAI----TREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNN-----QCHLSAV-K-AIAWCPWEPTLL 352 (507)
Q Consensus 285 ~~~~----~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-----~~~~~~v-~-~~~~~~~~~~~~ 352 (507)
...+ ......+.+++++|++..|+.+. ++.|+.||...+ . ...+ .++...- . .++|+|++..++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~---~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ---E-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC---C-EEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC---C-EEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 2222 21445678899999555555555 488999999865 2 2222 1122222 3 999999766888
Q ss_pred EEEccCCCCeEEEEeCCCCCeeeeeec---------------CCCeEEEEECCCCCeEEEEecc-CCCeEEEEeCCCccE
Q psy8285 353 ATGGGICDQTVRLWNSMNGKEKCHVKT---------------DSQVTSILWSEQYRELVTSHGK-QDCSLKMWEYPRLHL 416 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~~~~~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~g~-~d~~i~v~d~~~~~~ 416 (507)
++... ++.|+.|+.... ....... -.....++++|+|+.+++ .. .++.|+.|++.+++.
T Consensus 283 v~d~~--~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva--d~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 283 MSDQN--LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV--DGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp EEETT--TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE--ETTTTCEEEEEETTTTEE
T ss_pred EEeCC--CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE--eCCCCCEEEEEECCCCEE
Confidence 87765 889999997543 2222111 134789999999996666 66 788999999877764
Q ss_pred EEEeecc---------------ccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 417 IEELKIH---------------QERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 417 ~~~~~~~---------------~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
..+.++ -.....+++++++.++++-..++.|+.+++
T Consensus 358 -~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 -STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 444433 235788999999888888888888888775
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.52 E-value=1.5e-11 Score=112.34 Aligned_cols=235 Identities=10% Similarity=0.134 Sum_probs=156.7
Q ss_pred eeeeeeCCCC-EEEE--------EcCCeEEEEECCCCceeEEEe--cCCCCCCceEEEEEccC-CCeEEEEeCCCCcEEE
Q psy8285 168 TSGLDWGYHD-TLAV--------ALDTSVYTWNTKTNKTQLLVE--YPTYDNAYISCVAWKPR-TTDLAVTNTCTEYIDL 235 (507)
Q Consensus 168 i~~~~~s~~~-~~~~--------~~~~~i~iw~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~~dg~i~i 235 (507)
...++|++++ ++.+ ..++.|.+|+..+++...... ..+ +...+.+++++++ ++.+++. ..+.|.+
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~~~i~~~~~~g~l~v~~--~~~~l~~ 96 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNG-YGGIPAGCQCDRDANQLFVAD--MRLGLLV 96 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETT-EECCEEEEEECSSSSEEEEEE--TTTEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCC-CCCCCceEEEecCCCcEEEEE--CCCCEEE
Confidence 4578999887 5555 578899999988887654332 011 3356899999999 6545444 4457999
Q ss_pred EeCCCceeEEE-Eee----cCccEEEEEe--eCCEEEEEecC---------------CeEEEEECCCCCcCceeeecCCC
Q psy8285 236 WHEQEERLIQK-LRT----HMHQVIAMCW--NGNLLSCGTIG---------------GNILHYDVRTHSDYPTAITREGD 293 (507)
Q Consensus 236 wd~~~~~~~~~-~~~----~~~~v~~~~~--~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~ 293 (507)
||.. ++.... ... ....+.++.+ +++++++...+ +.|..++.. ++ ......+..
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~ 172 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTAFQ 172 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEEEEEES
T ss_pred EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEEeccCCC
Confidence 9988 665433 221 1234678888 56676666554 567777765 32 222223334
Q ss_pred ceEEEEEc----CCCCEEEEEe--CCcEEEEEcC-CCCC--CCCeeeecCCC-CCeeEEEEccCCCcEEEEEccCCCCeE
Q psy8285 294 VVCGLKWS----PNGRYLASGS--NNTVKIWDFR-QLDA--KRPQVNNQCHL-SAVKAIAWCPWEPTLLATGGGICDQTV 363 (507)
Q Consensus 294 ~v~~~~~~----~~~~~l~~~~--d~~i~i~d~~-~~~~--~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~d~~i 363 (507)
....++++ |+++.++.+. ++.|.+||+. .+.. ......+..+. ..+..++++++|. ++++... ++.|
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~--~~~i 249 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWG--SSHI 249 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEET--TTEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcC--CCEE
Confidence 56889999 9997666654 4899999986 2200 00222333333 5678999999984 5555433 7899
Q ss_pred EEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 364 RLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 364 ~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
.+||..+++.+..+..+ ..+.+++++|+++.|+++ ...++.|..|++..
T Consensus 250 ~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~-~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT-EHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE-ETTTTEEEEEECSS
T ss_pred EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEE-eCCCCeEEEEeCCC
Confidence 99999878777666655 679999999999966664 45567899999764
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=2e-10 Score=104.00 Aligned_cols=233 Identities=9% Similarity=-0.056 Sum_probs=164.1
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE-EeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK-LRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD 283 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~ 283 (507)
....+.++++.+++...++. ..++.|.+||.. ++.... +......+..+.+ ++++.++...++.|..+|.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~-~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQ-HKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEE-TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEc-CCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 45678999999999877766 678999999987 554332 2223466888888 46666666667889999987 432
Q ss_pred CceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCe-eeecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 284 YPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQ-VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 284 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
...........+.++++.++++++++.. ++.|..+|.. + +.. .........+..+++.+++. ++++... ++
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~--~~ 167 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G---TIYEYDLPNKGSYPAFITLGSDNA-LWFTENQ--NN 167 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S---CEEEEECSSTTCCEEEEEECTTSS-EEEEETT--TT
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C---CEEEccCCCCCCCceeEEECCCCC-EEEEecC--CC
Confidence 2122222346789999999999887776 5889999887 4 222 12232456789999999985 6665543 78
Q ss_pred eEEEEeCCCCCeeee-eec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEE-eeccccceeEEEECCCCCE
Q psy8285 362 TVRLWNSMNGKEKCH-VKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEE-LKIHQERILSAVLSPDQTC 438 (507)
Q Consensus 362 ~i~i~d~~~~~~~~~-~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~ 438 (507)
.|..+|. +++.... ... ...+..++++++|...++ ....+.|.+||. +++.... +..+...+.+++++++|+.
T Consensus 168 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l 243 (300)
T 2qc5_A 168 SIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV--EIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEI 243 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCE
T ss_pred eEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE--ccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCE
Confidence 8999998 5554432 112 246899999999977666 455678999998 4443332 3334566889999999987
Q ss_pred EEEEeCCCcEEEEec
Q psy8285 439 VAAASADETISIWNC 453 (507)
Q Consensus 439 l~s~~~dg~i~iw~~ 453 (507)
+++...++.|..|+.
T Consensus 244 ~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 244 WFTEWGANQIGRITN 258 (300)
T ss_dssp EEEETTTTEEEEECT
T ss_pred EEeccCCCeEEEECC
Confidence 776666789999998
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.48 E-value=2.2e-11 Score=123.69 Aligned_cols=243 Identities=12% Similarity=0.086 Sum_probs=162.5
Q ss_pred CCCceEEEEEccCCCeEEEEeCCC----CcEEEEeCCCceeEEE-EeecCccEEEEEe-eCCEEEEEecCC---------
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCT----EYIDLWHEQEERLIQK-LRTHMHQVIAMCW-NGNLLSCGTIGG--------- 271 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~d----g~i~iwd~~~~~~~~~-~~~~~~~v~~~~~-~~~~l~~~~~dg--------- 271 (507)
+...+..++|||||++|+.+.+.. ..|++||+.+++.+.. +... ....++| |++.|+.+..+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~WsDg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWLGNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEETTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEeCCCEEEEEEecCccccccccc
Confidence 455788999999999999753323 4799999999986543 2221 1123445 788888888774
Q ss_pred ----eEEEEECCCCCcCceeeec----CCCceEEEEEcCCCCEEEEEe----C-CcEEEEEcCCCCCCCCeeeecCCCCC
Q psy8285 272 ----NILHYDVRTHSDYPTAITR----EGDVVCGLKWSPNGRYLASGS----N-NTVKIWDFRQLDAKRPQVNNQCHLSA 338 (507)
Q Consensus 272 ----~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~----d-~~i~i~d~~~~~~~~~~~~~~~~~~~ 338 (507)
.|++|++.+.......+.. +......+.|+|||++|+... . +.|+++|+.++. .....+..+...
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~--~~~~~l~~~~~~ 282 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN--APLLTVQGDLDA 282 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT--CCCEEEECSSSS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC--CceEEEeCCCCc
Confidence 3999999876532222222 334577899999999876543 2 589999997752 234455556555
Q ss_pred eeEEEEccCCCcEEEEEccC-CCCeEEEEeCCCCCe--eeeeecC-CCeEEEEECCCCCeEEEEeccCCC--eEEEEeCC
Q psy8285 339 VKAIAWCPWEPTLLATGGGI-CDQTVRLWNSMNGKE--KCHVKTD-SQVTSILWSEQYRELVTSHGKQDC--SLKMWEYP 412 (507)
Q Consensus 339 v~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~--~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~ 412 (507)
.... |++++..+++.+... ..+.|..+|+.++.. ...+..+ ..+. .|++++++|+.. ...++ .|++|++.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~-~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAE-YMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEE-EEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEE-EEECCeeEEEEEECC
Confidence 5555 677777887766431 136899999988764 2333333 3444 899999998874 33444 68999987
Q ss_pred CccEEEEee-ccccceeEEEECCCCCEEEEEeCC----CcEEEEecCCCCc
Q psy8285 413 RLHLIEELK-IHQERILSAVLSPDQTCVAAASAD----ETISIWNCFPRDK 458 (507)
Q Consensus 413 ~~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~~ 458 (507)
.+ ....+. ...+.+..+.+++++..|+....+ +.++.||+.+++.
T Consensus 359 g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 359 GK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp SC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 54 344443 244567788888888876655443 7899999987654
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.47 E-value=1.3e-10 Score=106.53 Aligned_cols=221 Identities=10% Similarity=0.014 Sum_probs=148.4
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCcee
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTA 287 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 287 (507)
...++.|+|++..++.+...++.|..||..+++.. .+. ....+.++.+ +++++++ +. ..|.+||..+++. ..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~-~~-~gl~~~d~~~g~~--~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVL--TL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCE--EE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEE-EC-CCEEEEECCCCcE--EE
Confidence 35678999986666655467889999999887643 232 3467888888 4555554 44 4599999877652 22
Q ss_pred eecC-----CCceEEEEEcCCCCEEEEEeC-----CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEcc
Q psy8285 288 ITRE-----GDVVCGLKWSPNGRYLASGSN-----NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG 357 (507)
Q Consensus 288 ~~~~-----~~~v~~~~~~~~~~~l~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 357 (507)
+... ...+..++++|+|+++++..+ ....||.+.++ .+..+.........++|+|+++.++++...
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g----~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG----KVTKLFADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT----EEEEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCC----cEEEeeCCCcccCCeEEcCCCCEEEEEECC
Confidence 2211 235889999999997776542 22344444333 222332233456799999999877776654
Q ss_pred CCCCeEEEEeCC--CC-Ce-----eeeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccccee
Q psy8285 358 ICDQTVRLWNSM--NG-KE-----KCHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERIL 428 (507)
Q Consensus 358 ~~d~~i~i~d~~--~~-~~-----~~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~ 428 (507)
++.|.+||+. ++ +. ...+.. ...+..++++++|.+.++ ...++.|.+||. +++.+..+..+...++
T Consensus 200 --~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva--~~~~~~v~~~d~-~g~~~~~i~~~~~~~~ 274 (326)
T 2ghs_A 200 --VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEGAVDRYDT-DGNHIARYEVPGKQTT 274 (326)
T ss_dssp --TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE--EETTTEEEEECT-TCCEEEEEECSCSBEE
T ss_pred --CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE--EeCCCEEEEECC-CCCEEEEEECCCCCcE
Confidence 7899999986 55 32 112221 245788999999987776 445678999998 6777777776777799
Q ss_pred EEEEC-CCCCEEEEEeCC
Q psy8285 429 SAVLS-PDQTCVAAASAD 445 (507)
Q Consensus 429 ~~~~s-~~~~~l~s~~~d 445 (507)
+++|+ ++++.|+.++..
T Consensus 275 ~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 275 CPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEESTTSCEEEEEEBC
T ss_pred EEEEecCCCCEEEEEecC
Confidence 99998 888777555433
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.44 E-value=3.3e-12 Score=117.71 Aligned_cols=170 Identities=13% Similarity=0.047 Sum_probs=127.1
Q ss_pred cEEEEEe--eCCEEEEEecCCeEEEEECCCCC---------cCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcC
Q psy8285 253 QVIAMCW--NGNLLSCGTIGGNILHYDVRTHS---------DYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFR 321 (507)
Q Consensus 253 ~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~ 321 (507)
++..+++ ...++++|+.+ .+.+|++.... ........+.. |+.++| |+++|+++.++.|++||++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEEEEch
Confidence 4556666 57788888877 55569865322 11212334566 999999 9999999977999999998
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEecc
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~ 401 (507)
+. ........+..++.++.+.+. .+++... ||.|.+||+.++.... ....+++++|||+| +++ |.
T Consensus 115 sl---~~~~~~~~~~~~v~~i~~~~p--~~av~~~---dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~v--g~ 179 (388)
T 1xip_A 115 EL---SEFRTVTSFEKPVFQLKNVNN--TLVILNS---VNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAV--LL 179 (388)
T ss_dssp ST---TCEEEEEECSSCEEEEEECSS--EEEEEET---TSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEE--EE
T ss_pred hh---hccCccceeecceeeEEecCC--CEEEEEC---CCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEE--EE
Confidence 87 444455567778888887764 3555544 9999999999887654 23579999999999 555 66
Q ss_pred CCCeEEEEeCCCccE--EEEe------e---ccccceeEEEECCCCCEEEE
Q psy8285 402 QDCSLKMWEYPRLHL--IEEL------K---IHQERILSAVLSPDQTCVAA 441 (507)
Q Consensus 402 ~d~~i~v~d~~~~~~--~~~~------~---~~~~~i~~~~~s~~~~~l~s 441 (507)
.||.+++|+...++. ..++ . +|...|.++.|.+++.++++
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 899999998877664 4555 2 36788999999999998876
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=7.8e-11 Score=107.02 Aligned_cols=225 Identities=12% Similarity=0.073 Sum_probs=150.5
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY 284 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 284 (507)
.........|+|+++.|+.++..++.|..|+. +++ ...+..+...+..+.+ +++++++...++.|.+|+.. ++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-- 117 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-- 117 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC--
Confidence 44567889999999865555478899999998 444 4455556677888888 57766655556789999986 33
Q ss_pred ceeeecC-----CCceEEEEEcCCCCEEEE----Ee--------------CCcEEEEEcCCCCCCCCeeeecCCCCCeeE
Q psy8285 285 PTAITRE-----GDVVCGLKWSPNGRYLAS----GS--------------NNTVKIWDFRQLDAKRPQVNNQCHLSAVKA 341 (507)
Q Consensus 285 ~~~~~~~-----~~~v~~~~~~~~~~~l~~----~~--------------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 341 (507)
...+... ...+..+++.|+|+++++ |. .+.|+.+|..++ +... +. .......
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g---~~~~-~~-~~~~p~g 192 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS---PLQR-MA-DLDHPNG 192 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC---CCEE-EE-EESSEEE
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC---cEEE-Ee-cCCCCcc
Confidence 2222111 134667999999998886 32 145777776554 2222 22 3345678
Q ss_pred EEEccCCCcEEEEEccC---CCCeEEEEeCCCCCee--eeee--cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 342 IAWCPWEPTLLATGGGI---CDQTVRLWNSMNGKEK--CHVK--TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 342 ~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~--~~~~--~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
++|+|+++.++++.... ..+.|..|++..+... ..+. .......++++++|++.++ .. +.|.+|+. .+
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~---~~-~gv~~~~~-~g 267 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS---SG-TGVCVFDS-DG 267 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC---CS-SEEEEECT-TS
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe---cC-CcEEEECC-CC
Confidence 99999997777765410 0278999998755411 1111 1234567899999995444 33 45999997 57
Q ss_pred cEEEEeeccccceeEEEECCCCCEEEEEeCCCc
Q psy8285 415 HLIEELKIHQERILSAVLSPDQTCVAAASADET 447 (507)
Q Consensus 415 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~ 447 (507)
+.+..+..+. .+.+++|+++++.|+.++.++.
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 7777776554 5889999999988888877643
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.43 E-value=3.1e-10 Score=102.64 Aligned_cols=220 Identities=15% Similarity=0.128 Sum_probs=147.6
Q ss_pred eeeeeeCCC-C-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYH-D-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~-~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
..+..|+++ + ++.+. .++.|+.||..+++.. ... ....+.+++++++++++ ++ . ++.|.+||..+++..
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~----~~~~~~~i~~~~dG~l~-v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT----MDAPVSSVALRQSGGYV-AT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE----CSSCEEEEEEBTTSSEE-EE-E-TTEEEEEETTTTEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe----CCCceEEEEECCCCCEE-EE-E-CCeEEEEECCCCcEE
Confidence 446889984 4 55554 6789999999887653 333 34679999999999844 44 3 568999999887654
Q ss_pred EEEee----cCccEEEEEe--eCCEEEEEecC---------CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEE
Q psy8285 245 QKLRT----HMHQVIAMCW--NGNLLSCGTIG---------GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 245 ~~~~~----~~~~v~~~~~--~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 309 (507)
..... ....+.++.+ +++++++.... ..-.+|.+.... ............+.++|+||++.++.
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccccccceEEcCCCCEEEE
Confidence 43322 1235777888 57766554321 223444444322 12223333445688999999998766
Q ss_pred Ee--CCcEEEEEcC--CCCC--CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CC
Q psy8285 310 GS--NNTVKIWDFR--QLDA--KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQ 382 (507)
Q Consensus 310 ~~--d~~i~i~d~~--~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~ 382 (507)
+. ++.|.+||+. ++.. .+.+..+..+......++++++| +++++..+ .+.|..||..+++.+..+..+ ..
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~--~~~v~~~d~~tG~~~~~i~~p~~~ 242 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYN--GGRVIRLDPVTGKRLQTVKLPVDK 242 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEET--TTEEEEECTTTCCEEEEEECSSSB
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcC--CCEEEEEcCCCceEEEEEECCCCC
Confidence 65 4899999984 3310 01122223334567899999998 55555543 788999999999998888877 67
Q ss_pred eEEEEEC-CCCCeEEEEe
Q psy8285 383 VTSILWS-EQYRELVTSH 399 (507)
Q Consensus 383 i~~~~~s-~~~~~l~~~~ 399 (507)
+++++|. |+++.|++++
T Consensus 243 ~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEEEESGGGCEEEEEE
T ss_pred ceEEEEeCCCCCEEEEEc
Confidence 9999998 8988887754
No 216
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.42 E-value=4.2e-10 Score=103.81 Aligned_cols=251 Identities=15% Similarity=0.116 Sum_probs=162.7
Q ss_pred eEEEEECCC-----CceeEEEecCCCCCCceEEEEE-----------c--cCCCeEEEEeCCCCcEEEEeCCCc----ee
Q psy8285 186 SVYTWNTKT-----NKTQLLVEYPTYDNAYISCVAW-----------K--PRTTDLAVTNTCTEYIDLWHEQEE----RL 243 (507)
Q Consensus 186 ~i~iw~~~~-----~~~~~~~~~~~~~~~~v~~~~~-----------~--~~~~~l~~~~~~dg~i~iwd~~~~----~~ 243 (507)
.|.+.|+.. ++......++. .......+.| + +++++|++.+..++.|.++|+.+. +.
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~-~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~ 122 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPY-INDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKI 122 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSS-SCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCC-CCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCcee
Confidence 455566654 56665555554 3334445555 6 889999998788999999999765 66
Q ss_pred EEEEee-------cCccEEEEEe--eCCEEEEEecC------CeEEEEECCCCCcCceeeecC--C-CceEEEEEcCCCC
Q psy8285 244 IQKLRT-------HMHQVIAMCW--NGNLLSCGTIG------GNILHYDVRTHSDYPTAITRE--G-DVVCGLKWSPNGR 305 (507)
Q Consensus 244 ~~~~~~-------~~~~v~~~~~--~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~-~~v~~~~~~~~~~ 305 (507)
.+.+.. .......+.. ++ +++++..+ |.|.++|..+.+ ........ . ..-+.+-|+|+++
T Consensus 123 ~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~-v~~~~~~~~~~~~~~Yd~~~~p~~~ 200 (462)
T 2ece_A 123 IKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE-PLGKWEIDRGDQYLAYDFWWNLPNE 200 (462)
T ss_dssp EEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC-EEEECCSBCTTCCCCCCEEEETTTT
T ss_pred eeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe-EEEEEccCCCCccccceEEECCCCC
Confidence 666631 1112233333 56 66666555 789999999876 33333311 1 2234578899999
Q ss_pred EEEEEe--------------------CCcEEEEEcCCCCCCCCeeeecCC--CCCeeEEEE--ccCCCcEEEEEc---cC
Q psy8285 306 YLASGS--------------------NNTVKIWDFRQLDAKRPQVNNQCH--LSAVKAIAW--CPWEPTLLATGG---GI 358 (507)
Q Consensus 306 ~l~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~~~~~~~~~---~~ 358 (507)
.+++.. ..+|.+||+.++ +.+.++... ......+.| +|++++.++++. ..
T Consensus 201 ~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~---k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~ 277 (462)
T 2ece_A 201 VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR---KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKD 277 (462)
T ss_dssp EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT---EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred EEEEccCcCccccccccchhhhhhccCCEEEEEECCCC---cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccC
Confidence 988884 489999999876 555555432 123455656 999988777664 01
Q ss_pred CCCeEEEEeCCCCCe--eeee--ec-----------------CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC---c
Q psy8285 359 CDQTVRLWNSMNGKE--KCHV--KT-----------------DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR---L 414 (507)
Q Consensus 359 ~d~~i~i~d~~~~~~--~~~~--~~-----------------~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~---~ 414 (507)
.+++|.+|....++. .+.+ .. ......+.+||||++|+++ .-..+.|.+||+.. .
T Consensus 278 Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVS-nrg~d~VavfdV~d~~~~ 356 (462)
T 2ece_A 278 LSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLS-LWGIGEVRQYDISNPFKP 356 (462)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEE-ETTTTEEEEEECSSTTSC
T ss_pred CCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEE-eCCCCEEEEEEecCCCCc
Confidence 277887765544321 1111 00 2346789999999999997 45578999999853 3
Q ss_pred cEEEEeeccc--------------cceeEEEECCCCCEEEEEe
Q psy8285 415 HLIEELKIHQ--------------ERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 415 ~~~~~~~~~~--------------~~i~~~~~s~~~~~l~s~~ 443 (507)
+.+..+.... +.-..++++|||++|+++.
T Consensus 357 ~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 357 VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 4555554320 1247899999999999888
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.41 E-value=5.9e-12 Score=116.02 Aligned_cols=172 Identities=12% Similarity=0.047 Sum_probs=127.6
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCc---------eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEE
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNK---------TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLW 236 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iw 236 (507)
.++.+++++.+ +++++....+.+|++++.. .......+ +.. |+.++| ++..|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f--d~~~L~v~--~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF--HGDQVLVS--TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE--ETTEEEEE--ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE--CCCEEEEE--cCCcEEEE
Confidence 47789999976 6666666688889876443 22211121 445 999999 88888887 77999999
Q ss_pred eCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 237 HEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 237 d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
|+.+.........|..++.++.+....+++++.||.|.+||+.+... .. +...|+|++|+|+| ++.|. ||.+
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~--~~---~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST--KQ---LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE--EE---EEESEEEEEECSSE--EEEEETTSCE
T ss_pred EchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcc--cc---ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 99887766677778888988888544588999999999999997652 11 44689999999999 44555 8999
Q ss_pred EEEEcCCCCCCCC--eeee------c---CCCCCeeEEEEccCCCcEEEEE
Q psy8285 316 KIWDFRQLDAKRP--QVNN------Q---CHLSAVKAIAWCPWEPTLLATG 355 (507)
Q Consensus 316 ~i~d~~~~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~~~~~~ 355 (507)
++|+.... .. ..++ . +|...|.++.|.+++..+++-.
T Consensus 185 ~~~~~~~~---~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 185 QSFAWRNG---EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEETT---EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCCc---cccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99988765 22 2233 2 3678899999999885555443
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.40 E-value=2.2e-10 Score=108.22 Aligned_cols=226 Identities=10% Similarity=-0.046 Sum_probs=152.3
Q ss_pred eeeeeeCCCC-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC--cEEEEeCCCcee
Q psy8285 168 TSGLDWGYHD-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE--YIDLWHEQEERL 243 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~ 243 (507)
...|+|++++ ++++. .++.|++||..++........ . .... ++|+|+++.|+++ ..++ .|.+++...+..
T Consensus 133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~---~-~~~~-ia~~~~g~~l~~~-d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG---F-KGGK-PAVTKDKQRVYSI-GWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET---C-CBCB-CEECTTSSEEEEE-BSSTTCEEEEEEGGGTTC
T ss_pred ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc---C-CCCc-eeEecCCCcEEEE-ecCCCceEEEEEcCCCce
Confidence 4579999988 55544 568999999988877655543 2 2233 9999999999888 6655 799998876554
Q ss_pred EEEE----eecCccEEEEEee--CCEEEEEecCCeEEEEECCCCCcCceee-----ecCCCce--EEEEEcCCCCEEEEE
Q psy8285 244 IQKL----RTHMHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYPTAI-----TREGDVV--CGLKWSPNGRYLASG 310 (507)
Q Consensus 244 ~~~~----~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v--~~~~~~~~~~~l~~~ 310 (507)
...+ ......+.+++++ +..|+.+..++.|+.||..+.. ...+ .+....- ..++|+|++..|+.+
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 3333 2134556677773 4566667778899999998764 2222 1122222 289999965555555
Q ss_pred e--CCcEEEEEcCCCCCCCCeeeecCC---------------CCCeeEEEEccCCCcEEEEEc-cCCCCeEEEEeCCCCC
Q psy8285 311 S--NNTVKIWDFRQLDAKRPQVNNQCH---------------LSAVKAIAWCPWEPTLLATGG-GICDQTVRLWNSMNGK 372 (507)
Q Consensus 311 ~--d~~i~i~d~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~ 372 (507)
. ++.|+.|+.... ...+.++ -.....++++|+|. ++++.. + ++.|+.||+.+++
T Consensus 285 d~~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~--~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFK--GYCLRKLDILDGY 356 (409)
T ss_dssp ETTTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTT--TCEEEEEETTTTE
T ss_pred eCCCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCC--CCEEEEEECCCCE
Confidence 4 489999987642 2222222 23578999999985 666655 5 8999999987776
Q ss_pred eeeeeec---------------CCCeEEEEECCCCCeEEEEeccCCCeEEEEeC
Q psy8285 373 EKCHVKT---------------DSQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 373 ~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~ 411 (507)
....... -.....++++++|..+++ ...++.|+.+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa--d~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA--EAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE--ESTTCEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE--ECCCCeEEEEEe
Confidence 4433322 135889999999777666 667788887764
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.36 E-value=1.6e-10 Score=106.27 Aligned_cols=238 Identities=7% Similarity=-0.039 Sum_probs=152.4
Q ss_pred CCeEEEEECCCCceeEEEecCCCC----CCceEEEEEccCCCeEEEEeCC-CCcEEE--EeCCCceeEEEEeecCccEEE
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYD----NAYISCVAWKPRTTDLAVTNTC-TEYIDL--WHEQEERLIQKLRTHMHQVIA 256 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~-dg~i~i--wd~~~~~~~~~~~~~~~~v~~ 256 (507)
++.|.+||+.+++....+.+.+.. ......++++|||++++++... +..+.+ +|..+ +..+... .. ..
T Consensus 95 ~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~-~~ 169 (368)
T 1mda_H 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC-FH 169 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC-CC
T ss_pred CCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc-eE
Confidence 678999999999988877764101 1345689999999999998323 467888 99877 4444321 11 11
Q ss_pred EEe-eCCEEEEEecCCeEEEEECCC----CCcCce----eeecCCCceEEEEEcCCCCE-EEEEeCCcEEEEEcCCCCCC
Q psy8285 257 MCW-NGNLLSCGTIGGNILHYDVRT----HSDYPT----AITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326 (507)
Q Consensus 257 ~~~-~~~~l~~~~~dg~i~i~d~~~----~~~~~~----~~~~~~~~v~~~~~~~~~~~-l~~~~d~~i~i~d~~~~~~~ 326 (507)
+.. ....+++.+.|+.+.+.|+.+ ...... .+.-...+. . .+++.. +++.. +.+.+.|......
T Consensus 170 ~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~- 243 (368)
T 1mda_H 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA- 243 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC-
T ss_pred EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc-
Confidence 223 345566677788888888876 111110 111122333 3 455444 44444 8999999865310
Q ss_pred CCeeeecC----------CCCCeeEEEEccCCCcEEEEEccC-C-----CCeEEEEeCCCCCeeeeeecCCCeEEEEECC
Q psy8285 327 RPQVNNQC----------HLSAVKAIAWCPWEPTLLATGGGI-C-----DQTVRLWNSMNGKEKCHVKTDSQVTSILWSE 390 (507)
Q Consensus 327 ~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~-~-----d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~ 390 (507)
+.+..+.- .......+.++|++++++++.... . +..+.++|+.+++.+..+........+.|+|
T Consensus 244 ~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~ 323 (368)
T 1mda_H 244 TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ 323 (368)
T ss_dssp EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECC
T ss_pred eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECC
Confidence 11111110 111222378999998888754310 0 1245599999999999888777889999999
Q ss_pred CCCeEEEEecc-CCCeEEEEeCCCccEEEEeeccccceeEEEECC
Q psy8285 391 QYRELVTSHGK-QDCSLKMWEYPRLHLIEELKIHQERILSAVLSP 434 (507)
Q Consensus 391 ~~~~l~~~~g~-~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~ 434 (507)
||++++++ .. .++.|.++|+.+++.+..+..... -..+++.+
T Consensus 324 Dg~~l~va-~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 324 DGASDNYA-NSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp SSSCEEEE-EETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred CCCEEEEE-ccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 99976665 34 589999999999999999876544 34555543
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.36 E-value=1.5e-09 Score=99.39 Aligned_cols=215 Identities=11% Similarity=0.032 Sum_probs=142.2
Q ss_pred eeeeeeCCC-C-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYH-D-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~-~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.....|+|+ + ++.+. .++.|..|+..+++... .. ....+.+++|+|+++++++. .+ .|.+||..+++..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~----~~~~v~~i~~~~dg~l~v~~--~~-gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA----LPFMGSALAKISDSKQLIAS--DD-GLFLRDTATGVLT 122 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE----CSSCEEEEEEEETTEEEEEE--TT-EEEEEETTTCCEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE----CCCcceEEEEeCCCeEEEEE--CC-CEEEEECCCCcEE
Confidence 356889996 3 44444 67899999998876543 33 34579999999999876654 33 4999999887654
Q ss_pred EEEee----cCccEEEEEe--eCCEEEEEec------CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-
Q psy8285 245 QKLRT----HMHQVIAMCW--NGNLLSCGTI------GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS- 311 (507)
Q Consensus 245 ~~~~~----~~~~v~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 311 (507)
..... ....+.++.+ +++++++... .+.|..++ +++ ...+.........++|+||++.++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 33221 1235778888 5666554432 24566666 332 222222334567899999999876665
Q ss_pred -CCcEEEEEcC--CC-CCC--CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeE
Q psy8285 312 -NNTVKIWDFR--QL-DAK--RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVT 384 (507)
Q Consensus 312 -d~~i~i~d~~--~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~ 384 (507)
++.|.+||+. ++ ... +.+..+.........++++++|. ++++..+ ++.|..||. +++.+..+..+ ..+.
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~--~~~v~~~d~-~g~~~~~i~~~~~~~~ 274 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWG--EGAVDRYDT-DGNHIARYEVPGKQTT 274 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEET--TTEEEEECT-TCCEEEEEECSCSBEE
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeC--CCEEEEECC-CCCEEEEEECCCCCcE
Confidence 3899999986 33 111 11222223345678899999985 5544433 689999998 67777777665 4699
Q ss_pred EEEEC-CCCCeEEEE
Q psy8285 385 SILWS-EQYRELVTS 398 (507)
Q Consensus 385 ~~~~s-~~~~~l~~~ 398 (507)
+++|+ |+++.|+++
T Consensus 275 ~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 275 CPAFIGPDASRLLVT 289 (326)
T ss_dssp EEEEESTTSCEEEEE
T ss_pred EEEEecCCCCEEEEE
Confidence 99998 898887764
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.35 E-value=1.3e-10 Score=106.91 Aligned_cols=263 Identities=9% Similarity=-0.019 Sum_probs=169.4
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC---------CCCcEEEEeCCCceeEEEEeecC-----
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT---------CTEYIDLWHEQEERLIQKLRTHM----- 251 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~dg~i~iwd~~~~~~~~~~~~~~----- 251 (507)
.|.++|..+++....+... ..+ .+.++|++++++++.+ .++.|.+||+.+++.+..+....
T Consensus 47 ~vsvID~~t~~v~~~i~vG---~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGA---FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEEC---TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeCC---CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 8999999999988777763 344 7999999999999831 36889999999999999886431
Q ss_pred --ccEEEEEe--eCCEEEEEec--CCeEEE--EECCCCCcCceeeecCCCceEEEEEcCCCCE-EEEEe-CCcEEEEEcC
Q psy8285 252 --HQVIAMCW--NGNLLSCGTI--GGNILH--YDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGS-NNTVKIWDFR 321 (507)
Q Consensus 252 --~~v~~~~~--~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-d~~i~i~d~~ 321 (507)
.....+.+ |+++++++.. ...+.+ +|..+ ...+.. ... ..+.|+++. +++.+ |+.+.+.|+.
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 12234445 8888888874 356888 88876 122221 111 122344432 23333 6777888887
Q ss_pred C-----CCCCCCe-eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--eeeeeec-------C----CC
Q psy8285 322 Q-----LDAKRPQ-VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EKCHVKT-------D----SQ 382 (507)
Q Consensus 322 ~-----~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~-------~----~~ 382 (507)
. ++..... ..+.-...+. . .+++..++.+. . +.+.+.|..... .+..+.. . ..
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 6 2100000 0111112233 3 66665666543 3 789999986543 2222211 0 11
Q ss_pred eEEEEECCCCCeEEEEec-c-C-----CCeEEEEeCCCccEEEEeeccccceeEEEECCCCCE-EEEEe-CCCcEEEEec
Q psy8285 383 VTSILWSEQYRELVTSHG-K-Q-----DCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC-VAAAS-ADETISIWNC 453 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g-~-~-----d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~s~~-~dg~i~iw~~ 453 (507)
...+.++|+++.++++.. . . ++.+.++|+.+.+.+..+.... ....++|+|||++ +++.. .++.|.++|+
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 122689999999987422 1 1 2356699999999999887544 5789999999984 56666 5899999999
Q ss_pred CCCCcccceeecCCCcc
Q psy8285 454 FPRDKKRKARQVGSGSS 470 (507)
Q Consensus 454 ~~~~~~~~~~~~~~~~~ 470 (507)
.+.+.+..++.......
T Consensus 345 ~t~kvv~~I~vg~~P~~ 361 (368)
T 1mda_H 345 ASDQDQSSVELDKGPES 361 (368)
T ss_dssp SSCEEEEECCCCSCCCE
T ss_pred CCCcEEEEEECCCCCCE
Confidence 99998877665444333
No 222
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.35 E-value=3.7e-10 Score=113.65 Aligned_cols=279 Identities=12% Similarity=0.009 Sum_probs=185.1
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCC---------ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA---------YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
+++++.++.|+-+|..+|+.+-...... ... ....+++ .+..++++ +.|+.|..+|..+++.+..+.
T Consensus 80 vyv~~~~~~v~AlD~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~a~--~~~~v~v~-~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 80 MYVSASWSVVHAIDTRTGNRIWTYDPQI-DRSTGFKGCCDVVNRGVAL--WKGKVYVG-AWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp EEEECGGGCEEEEETTTTEEEEEECCCC-CGGGGGGSSSCSCCCCCEE--ETTEEEEE-CTTSEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCC-CccccccccccCCCCCceE--ECCEEEEE-cCCCEEEEEECCCCCEEeeec
Confidence 5666678899999999999877666532 110 0112333 35678888 889999999999999988877
Q ss_pred ec-C----ccEE-EEEeeCCEEEEEec------CCeEEEEECCCCCcCceeeecC-------------------------
Q psy8285 249 TH-M----HQVI-AMCWNGNLLSCGTI------GGNILHYDVRTHSDYPTAITRE------------------------- 291 (507)
Q Consensus 249 ~~-~----~~v~-~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~------------------------- 291 (507)
.. . ..+. .....+..+++++. ++.|+.+|..+++..-......
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~ 235 (677)
T 1kb0_A 156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW 235 (677)
T ss_dssp TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred CCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCce
Confidence 54 2 1111 11224556666554 6899999999887322211110
Q ss_pred ------CCceEEEEEcCCCCEEEEEe-CC-------------------cEEEEEcCCCCCCCCeeeecC--CC-------
Q psy8285 292 ------GDVVCGLKWSPNGRYLASGS-NN-------------------TVKIWDFRQLDAKRPQVNNQC--HL------- 336 (507)
Q Consensus 292 ------~~~v~~~~~~~~~~~l~~~~-d~-------------------~i~i~d~~~~~~~~~~~~~~~--~~------- 336 (507)
......++++|++..++.+. ++ .|..+|.+++ +.+..+.. |.
T Consensus 236 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG---~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG---KYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC---CEEEEEESSTTCCSCCCCC
T ss_pred eEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC---CEEEEEecCCCcccccccC
Confidence 01113578889888888776 32 4999999988 55544332 21
Q ss_pred CCeeEEEEccCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCC-----------C-e-------------------
Q psy8285 337 SAVKAIAWCPWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDS-----------Q-V------------------- 383 (507)
Q Consensus 337 ~~v~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------~-i------------------- 383 (507)
....-+....+|+ .+++.+.. +|.++++|..+|+.+..+.... . +
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~--~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~ 390 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPK--NGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY 390 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCT--TSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred CCcEEEecccCCcEeeEEEEECC--CCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence 1122233334663 44555544 9999999999999887654221 0 1
Q ss_pred -----EEEEECCCCCeEEEEecc-----------------------------------------CCCeEEEEeCCCccEE
Q psy8285 384 -----TSILWSEQYRELVTSHGK-----------------------------------------QDCSLKMWEYPRLHLI 417 (507)
Q Consensus 384 -----~~~~~s~~~~~l~~~~g~-----------------------------------------~d~~i~v~d~~~~~~~ 417 (507)
..++++|++..+++.... ..|.|..||+.+++.+
T Consensus 391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~ 470 (677)
T 1kb0_A 391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA 470 (677)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence 146889998888773210 1278999999999998
Q ss_pred EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecC
Q psy8285 418 EELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVG 466 (507)
Q Consensus 418 ~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 466 (507)
..+.. ..++....+..++..++.++.||.+++||..+++.+.......
T Consensus 471 W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 471 WSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 88763 4445566677788889999999999999999999988766443
No 223
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.33 E-value=7.7e-10 Score=105.82 Aligned_cols=275 Identities=12% Similarity=0.022 Sum_probs=185.3
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecC---------------------------------C---CCCCceEEEEEcc---
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYP---------------------------------T---YDNAYISCVAWKP--- 218 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~---------------------------------~---~~~~~v~~~~~~~--- 218 (507)
+.+++..|+++++-+-+++..+.+..- | ...+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 566778999999988877655432210 1 0112233355555
Q ss_pred --CCCeEEEEeCCCCcEEEEeCCCceeEEEEee-cCccEEEEEe----eCCEEEEEe------------------cCCeE
Q psy8285 219 --RTTDLAVTNTCTEYIDLWHEQEERLIQKLRT-HMHQVIAMCW----NGNLLSCGT------------------IGGNI 273 (507)
Q Consensus 219 --~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~----~~~~l~~~~------------------~dg~i 273 (507)
||+++++....++.|.+.|+.+.++...+.- .......+.+ +++++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 8899999856677899999999998886542 2244666664 688888884 23578
Q ss_pred EEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CC--------------------------------------c
Q psy8285 274 LHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NN--------------------------------------T 314 (507)
Q Consensus 274 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~--------------------------------------~ 314 (507)
.+.|..+.+. ...+.-.. ....++++|+|+++++.+ +. .
T Consensus 178 tvID~~t~~v-~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 178 TAVDADKWEV-AWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEETTTTEE-EEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEECCCCeE-EEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 8999988653 33322212 345678999999988887 21 3
Q ss_pred EEEEEcCCCCCCCC-eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC------------eeeeeecCC
Q psy8285 315 VKIWDFRQLDAKRP-QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK------------EKCHVKTDS 381 (507)
Q Consensus 315 i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------------~~~~~~~~~ 381 (507)
|.+.|.++... .. +..+. -.....++.++|||+++++++.. +.+|.++|+.+.+ ....+....
T Consensus 256 V~VID~~~~~~-~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~--s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~ 331 (595)
T 1fwx_A 256 VKVVDGRKEAS-SLFTRYIP-IANNPHGCNMAPDKKHLCVAGKL--SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL 331 (595)
T ss_dssp EEEEECSGGGC-CSSEEEEE-EESSCCCEEECTTSSEEEEECTT--SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred EEEEeCcccCC-ceeEEEEe-cCCCceEEEEcCCCCEEEEeCCC--CCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence 56666665100 23 23332 23355689999999999988876 9999999998653 344555556
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCC----------ccEEEEeeccccce-----eEEEECCCCCEEEEEeC--
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPR----------LHLIEELKIHQERI-----LSAVLSPDQTCVAAASA-- 444 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~----------~~~~~~~~~~~~~i-----~~~~~s~~~~~l~s~~~-- 444 (507)
....++|+|+| +++++ ...|+.|.+||+.. .+.+..+..|..+- ..+.++|||++|+++..
T Consensus 332 gP~h~aF~~dG-~aY~t-~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 332 GPLHTAFDGRG-NAYTS-LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp CEEEEEECTTS-EEEEE-ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred CcceEEECCCC-eEEEE-EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence 78999999999 66655 67899999999876 45677776654432 23456899999998753
Q ss_pred -CCc----------EEEEecCCCCccc
Q psy8285 445 -DET----------ISIWNCFPRDKKR 460 (507)
Q Consensus 445 -dg~----------i~iw~~~~~~~~~ 460 (507)
|.. -.++|+..++...
T Consensus 410 kdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 410 KDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp TTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred ccccccCCCCCCCcceEEEcCCCcEEE
Confidence 432 2889996555433
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.33 E-value=3.5e-10 Score=114.90 Aligned_cols=238 Identities=11% Similarity=0.033 Sum_probs=157.0
Q ss_pred cceeeeeeCCCC-EEEEE--cC----CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC-------
Q psy8285 166 FYTSGLDWGYHD-TLAVA--LD----TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE------- 231 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~~~~--~~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg------- 231 (507)
+.+..++||||+ .++.+ .. ..|++||+.+++.... .+ .......++|+ |++.|+.+ +.+.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~---~~~k~~~~~Ws-Dg~~l~y~-~~~~~~~~~~~ 202 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PL---KDVKFSGISWL-GNEGFFYS-SYDKPDGSELS 202 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EE---EEEESCCCEEE-TTTEEEEE-ESSCCC-----
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-cc---CCceeccEEEe-CCCEEEEE-EecCccccccc
Confidence 457789999998 55543 12 4799999999986543 22 11123578999 99999988 5553
Q ss_pred ------cEEEEeCCCcee--EEEEe--e-cCccEEEEEe--eCCEEEEEec----CCeEEEEECCCCCcCceeeecCCCc
Q psy8285 232 ------YIDLWHEQEERL--IQKLR--T-HMHQVIAMCW--NGNLLSCGTI----GGNILHYDVRTHSDYPTAITREGDV 294 (507)
Q Consensus 232 ------~i~iwd~~~~~~--~~~~~--~-~~~~v~~~~~--~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (507)
.|++|++.+... ...+. . +......+.| |+++|+.... ...|+++|+.++......+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 499999877542 22222 2 3445677778 7887765443 2489999998765345566666666
Q ss_pred eEEEEEcCCCCEEEEEe--C---CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC--eEEEEe
Q psy8285 295 VCGLKWSPNGRYLASGS--N---NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ--TVRLWN 367 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~--d---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~--~i~i~d 367 (507)
.... +++++..|+..+ + +.|..+|+.++.. .....+..|...+. .|+++++.++++... ++ .|++||
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~--~g~~~l~~~d 356 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPERQQVL--TVHSGSGYLFAEYMV--DATARVEQFD 356 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCE--EEEEETTEEEEEEEE--TTEEEEEEEC
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecCCCCEE--EEEEECCEEEEEEEE--CCeeEEEEEE
Confidence 5555 666666655444 2 5788899887521 11344555665554 899999888877653 44 789999
Q ss_pred CCCCCeeeeeec--CCCeEEEEECCCCCeEEEEecc--CCCeEEEEeCCCccE
Q psy8285 368 SMNGKEKCHVKT--DSQVTSILWSEQYRELVTSHGK--QDCSLKMWEYPRLHL 416 (507)
Q Consensus 368 ~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~g~--~d~~i~v~d~~~~~~ 416 (507)
+..+ ....+.. ...+..+.++++++.++....+ .-+.++.||+.+++.
T Consensus 357 ~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 357 YEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 8744 4444443 3467788889999888774211 237899999987754
No 225
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.33 E-value=1.1e-08 Score=90.66 Aligned_cols=243 Identities=9% Similarity=0.013 Sum_probs=158.6
Q ss_pred EcCCeEEEEECCCCcee-----EEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEE
Q psy8285 182 ALDTSVYTWNTKTNKTQ-----LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIA 256 (507)
Q Consensus 182 ~~~~~i~iw~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 256 (507)
+..+.|+.+++...... ..... ....+..++|++++..|+.+...++.|..+++........+.........
T Consensus 7 ~~~~~I~~~~~~g~~~~~~~~~~~~~~---~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ 83 (267)
T 1npe_A 7 AQTGKIERLPLERNTMKKTEAKAFLHI---PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEG 83 (267)
T ss_dssp EEEEEEEEEEESSSCBCGGGCEEEEEE---EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEE
T ss_pred EcCCeEEEEEecCcccccccceeeecC---CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccE
Confidence 33457888888765421 12221 22457899999988778777467789999998765543333333346677
Q ss_pred EEee--CCEEEEE-ecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C---CcEEEEEcCCCCCCCCe
Q psy8285 257 MCWN--GNLLSCG-TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N---NTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 257 ~~~~--~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~ 329 (507)
++++ +..|+.+ ...+.|.+++++... ..............++++|++..|+.+. . +.|..+++... ..
T Consensus 84 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~----~~ 158 (267)
T 1npe_A 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT----NR 158 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC----CC
T ss_pred EEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC----Cc
Confidence 8884 4555544 456789999987543 2222222224678999999766655554 2 57888887643 22
Q ss_pred eee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEE
Q psy8285 330 VNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKM 408 (507)
Q Consensus 330 ~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v 408 (507)
..+ .........++++|++.+++++..+ .+.|..+|.........+........++.. +..|+++ ....+.|.+
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~--~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva-~~~~~~v~~ 233 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAG--THRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKTNSVIA 233 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTTTEEEE
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEEECC--CCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEE-ECCCCeEEE
Confidence 222 1233467899999988888888765 789999999765444444433455677654 5566654 456789999
Q ss_pred EeCCCccEEEEeeccc-cceeEEEECCCCC
Q psy8285 409 WEYPRLHLIEELKIHQ-ERILSAVLSPDQT 437 (507)
Q Consensus 409 ~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~ 437 (507)
+|..+++.+..+.... .....+++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 9999999888886433 2467788888764
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.31 E-value=1.4e-09 Score=102.01 Aligned_cols=266 Identities=9% Similarity=-0.037 Sum_probs=169.0
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecCCCC-------CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYD-------NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT 249 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~ 249 (507)
.+++++.++.|+.+|.++++......... . ...+.+... .++..++++ +.++.|..+|..+++.+.....
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~v~v~-~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAE-KDGWFSKEPALLSGGVT-VSGGHVYIG-SEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC----CCSCCCCCEEEEEE-EETTEEEEE-ETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCcc-ccccccccCcccccCce-EeCCEEEEE-cCCCEEEEEECCCCCEEEEEeC
Confidence 36666778899999999999876666532 1 223332222 235577777 7899999999999998877664
Q ss_pred cCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCce-----EEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q psy8285 250 HMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV-----CGLKWSPNGRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 250 ~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 323 (507)
...........+..++.++.++.|..+|..+++.. .......... ...... +..++.+. ++.+..+|.+++
T Consensus 132 ~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~-W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 132 AGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVK-WTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp SSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEE-EEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTC
T ss_pred CCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEE-EEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCC
Confidence 43322223345778888999999999999887632 2222111110 111222 34566666 689999999887
Q ss_pred CCCCCeeeecCCCCC----------e-eEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCC
Q psy8285 324 DAKRPQVNNQCHLSA----------V-KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQY 392 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (507)
+.+......... + ..... .+..+++.+. ++.+..+|..+++.+...... ....+.. ++
T Consensus 209 ---~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~---~g~l~~~d~~tG~~~w~~~~~-~~~~~~~--~~ 277 (376)
T 3q7m_A 209 ---QMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAY---NGNLTALDLRSGQIMWKRELG-SVNDFIV--DG 277 (376)
T ss_dssp ---CEEEEEECCC-----------CCCCCCEE--ETTEEEEECT---TSCEEEEETTTCCEEEEECCC-CEEEEEE--ET
T ss_pred ---cEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEec---CcEEEEEECCCCcEEeeccCC-CCCCceE--EC
Confidence 444443311100 0 11111 1335555443 899999999999988766543 3344444 35
Q ss_pred CeEEEEeccCCCeEEEEeCCCccEEEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee
Q psy8285 393 RELVTSHGKQDCSLKMWEYPRLHLIEELKI-HQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
..+++ ++.++.|..+|..+++.+..... ....+..... .+..|+.++.+|.|+++|..+++......
T Consensus 278 ~~l~~--~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 278 NRIYL--VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp TEEEE--EETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEE--EcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 66766 56789999999999998877652 2222333333 35678889999999999999988766544
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.30 E-value=5.8e-10 Score=101.26 Aligned_cols=223 Identities=12% Similarity=0.116 Sum_probs=144.3
Q ss_pred eeeeeeCCCC--EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYHD--TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.....|++++ ++... .++.|..|+. +++.... .. +...+..++++++|+.+++. ..++.|.+|+.. ++..
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~-~~---~~~~~~gl~~d~dG~l~v~~-~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVL-LD---ATAFTNGNAVDAQQRLVHCE-HGRRAITRSDAD-GQAH 119 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEE-EE---SCSCEEEEEECTTSCEEEEE-TTTTEEEEECTT-SCEE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEE-eC---CCCccceeeECCCCCEEEEE-CCCCEEEEECCC-CCEE
Confidence 4568899876 44444 6789999998 5554333 22 45678999999999866655 666889999986 5433
Q ss_pred EEEeec----CccEEEEEe--eCCEEEE----Eec-------------CCeEEEEECCCCCcCceeeecCCCceEEEEEc
Q psy8285 245 QKLRTH----MHQVIAMCW--NGNLLSC----GTI-------------GGNILHYDVRTHSDYPTAITREGDVVCGLKWS 301 (507)
Q Consensus 245 ~~~~~~----~~~v~~~~~--~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 301 (507)
...... ...+.++.+ +|++.++ |.. .+.|+.+|..+++ ...+. .......++|+
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~--~~~~~-~~~~p~gl~~s 196 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP--LQRMA-DLDHPNGLAFS 196 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC--CEEEE-EESSEEEEEEC
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc--EEEEe-cCCCCcceEEc
Confidence 222211 123556777 5777765 321 2467778776554 22222 33456789999
Q ss_pred CCCCEEEEEe-C------CcEEEEEcCCCCCCCCeeee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 302 PNGRYLASGS-N------NTVKIWDFRQLDAKRPQVNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 302 ~~~~~l~~~~-d------~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
||++.|+.+. . +.|.+|++.... ......+ ....+....++++++|. ++++.. + .|.+|+. .++.
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~---~-gv~~~~~-~g~~ 269 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG---T-GVCVFDS-DGQL 269 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS---S-EEEEECT-TSCE
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC---C-cEEEECC-CCCE
Confidence 9999877765 3 579999987541 0001111 11234456789999995 555432 4 4999997 6777
Q ss_pred eeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEe
Q psy8285 374 KCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 374 ~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d 410 (507)
+..+..+..+.+++|+|+++.|+++ +. +.+..++
T Consensus 270 ~~~~~~~~~~~~~~f~~d~~~L~it--~~-~~l~~~~ 303 (305)
T 3dr2_A 270 LGHIPTPGTASNCTFDQAQQRLFIT--GG-PCLWMLP 303 (305)
T ss_dssp EEEEECSSCCCEEEECTTSCEEEEE--ET-TEEEEEE
T ss_pred EEEEECCCceeEEEEeCCCCEEEEE--cC-CeEEEEE
Confidence 7777766678999999999988883 33 3454444
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.30 E-value=8.7e-10 Score=111.25 Aligned_cols=278 Identities=12% Similarity=0.040 Sum_probs=179.2
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCC--------ce-EEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA--------YI-SCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
+++++.++.|+.+|..+|+..-...... ... .+ ..+.. .+..++++ +.|+.|..+|..+|+.+....
T Consensus 73 vyv~~~~~~v~AlD~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~--~~g~v~v~-~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 73 MYTTGPFSVVYALDARDGRLIWKYDPQS-DRHRAGEACCDAVNRGVAV--WKGKVYVG-VLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp EEEECGGGCEEEEETTTCCEEEEECCCC-CGGGGGGCTTCSCCCCCEE--ETTEEEEE-CTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCeEEEEECCCCceeEEEcCCC-CccccccccccCCCCccEE--ECCEEEEE-ccCCEEEEEECCCCCEeeeec
Confidence 6666778899999999999877665432 100 00 11222 35678888 889999999999999987776
Q ss_pred ec--Cc---cEE-EEEeeCCEEEEEe------cCCeEEEEECCCCCcCceeeec--------------------------
Q psy8285 249 TH--MH---QVI-AMCWNGNLLSCGT------IGGNILHYDVRTHSDYPTAITR-------------------------- 290 (507)
Q Consensus 249 ~~--~~---~v~-~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~-------------------------- 290 (507)
.. .. .+. +....+..++++. .+|.|+.||.++++..-.....
T Consensus 149 ~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~ 228 (689)
T 1yiq_A 149 TRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYV 228 (689)
T ss_dssp CCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHH
T ss_pred CcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceee
Confidence 42 11 111 1112344454543 3689999999988732221110
Q ss_pred ----CCCceEEEEEcCCCCEEEEEe-CC-------------------cEEEEEcCCCCCCCCeeeecC--CC-------C
Q psy8285 291 ----EGDVVCGLKWSPNGRYLASGS-NN-------------------TVKIWDFRQLDAKRPQVNNQC--HL-------S 337 (507)
Q Consensus 291 ----~~~~v~~~~~~~~~~~l~~~~-d~-------------------~i~i~d~~~~~~~~~~~~~~~--~~-------~ 337 (507)
.......++++|+..+++.+. ++ .|..+|.+++ +.+..+.. |. .
T Consensus 229 ~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG---~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 229 EQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG---EYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC---CEEEEEESSTTCCSCCCCCS
T ss_pred ecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC---ceeEeeecCCcccccccCCC
Confidence 001112578889888888877 44 3999999998 55554432 21 1
Q ss_pred CeeEEEEccCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCC----------------------------------
Q psy8285 338 AVKAIAWCPWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDS---------------------------------- 381 (507)
Q Consensus 338 ~v~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------------------------- 381 (507)
+........+|. .+++.+.. +|.++++|.++|+.+.......
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~--~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p 383 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPK--NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTP 383 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCT--TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESS
T ss_pred CcEEEeeccCCcEEEEEEEECC--CCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCC
Confidence 122222223443 24555543 9999999999999874332110
Q ss_pred ------CeEEEEECCCCCeEEEEecc-------------------------------------------CCCeEEEEeCC
Q psy8285 382 ------QVTSILWSEQYRELVTSHGK-------------------------------------------QDCSLKMWEYP 412 (507)
Q Consensus 382 ------~i~~~~~s~~~~~l~~~~g~-------------------------------------------~d~~i~v~d~~ 412 (507)
.-..++++|+...+++.+.. .+|.|+.||+.
T Consensus 384 ~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~ 463 (689)
T 1yiq_A 384 AFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV 463 (689)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred CcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence 01136888888877763110 14789999999
Q ss_pred CccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeec
Q psy8285 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQV 465 (507)
Q Consensus 413 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 465 (507)
+++.+..+..+. ++..-.+...+.+++.++.||.++.||..+++.+.+.+..
T Consensus 464 tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 464 KQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp TTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 999998887543 3444466677889999999999999999999998776644
No 229
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.28 E-value=2.3e-08 Score=88.74 Aligned_cols=247 Identities=9% Similarity=0.005 Sum_probs=152.6
Q ss_pred CeEEEEeCCCCcEEEEeCCCcee-----EEEEeecCccEEEEEee--CCEEE-EEecCCeEEEEECCCCCcCceeeecCC
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEERL-----IQKLRTHMHQVIAMCWN--GNLLS-CGTIGGNILHYDVRTHSDYPTAITREG 292 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~--~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (507)
++|+.+ . .+.|+.+++..... ...+......+..++++ ++.|+ +-...+.|..+++.... .........
T Consensus 2 ~~l~~~-~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~ 78 (267)
T 1npe_A 2 THLLFA-Q-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDL 78 (267)
T ss_dssp EEEEEE-E-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTC
T ss_pred cEEEEE-c-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-cEEEEECCC
Confidence 455655 3 45788888765432 11222223456778884 44554 44456899999997654 222222233
Q ss_pred CceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC
Q psy8285 293 DVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 293 ~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
.....+++++++..++.+. . +.|.++++... ...............++++|++..++++..+...+.|..+++..
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCC---CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 5678999999877776666 3 89999998753 22122222224678999999777787776421246888888754
Q ss_pred CCeeeeee-cC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEe-CCCc
Q psy8285 371 GKEKCHVK-TD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAAS-ADET 447 (507)
Q Consensus 371 ~~~~~~~~-~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~dg~ 447 (507)
.. ...+. .. .....++++|++..|+++ ....+.|.++|.........+.. ......++.. +..|+.+. ..+.
T Consensus 156 ~~-~~~~~~~~~~~P~gia~d~~~~~lyv~-d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~ 230 (267)
T 1npe_A 156 TN-RRILAQDNLGLPNGLTFDAFSSQLCWV-DAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNS 230 (267)
T ss_dssp CC-CEEEECTTCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTE
T ss_pred CC-cEEEEECCCCCCcEEEEcCCCCEEEEE-ECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCe
Confidence 33 33332 22 468899999998887775 45678999999876544333332 2223556653 44555444 5689
Q ss_pred EEEEecCCCCcccceeecC--CCcceEEeeccC
Q psy8285 448 ISIWNCFPRDKKRKARQVG--SGSSLEFAILKQ 478 (507)
Q Consensus 448 i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 478 (507)
|.+++..+++....+.... ....+.+.++.+
T Consensus 231 v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 231 VIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 9999998887776654332 244555555544
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.27 E-value=3.1e-09 Score=99.61 Aligned_cols=256 Identities=11% Similarity=0.045 Sum_probs=162.3
Q ss_pred CCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccE
Q psy8285 175 YHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQV 254 (507)
Q Consensus 175 ~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 254 (507)
.+.+++++.++.|+.+|..+++........+ .. ....... +..++++ +.++.|..+|..+++.+..........
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~~--~~~p~~~--~~~v~v~-~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAG-EA--LSRPVVS--DGLVLIH-TSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSS-CC--CSCCEEE--TTEEEEE-CTTSEEEEEETTTCCEEEEEECCC---
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCC-ce--EcCCEEE--CCEEEEE-cCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 3447777889999999999999876666532 11 1111222 4477777 789999999999999887766432221
Q ss_pred -----EEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCC------ceEEEEEcC--CCCEEEEEe-CCcEEEEEc
Q psy8285 255 -----IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD------VVCGLKWSP--NGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 255 -----~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~v~~~~~~~--~~~~l~~~~-d~~i~i~d~ 320 (507)
......+..++.++.++.+..+|..+++........... .+..+.-.| .+..++.++ ++.+..+|.
T Consensus 177 ~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~ 256 (376)
T 3q7m_A 177 SLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL 256 (376)
T ss_dssp --CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred eecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence 222335677888888999999999887632221111100 000000111 234556666 699999999
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec-C-CCeEEEEECCCCCeEEEE
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-D-SQVTSILWSEQYRELVTS 398 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~-~~i~~~~~s~~~~~l~~~ 398 (507)
+++ +.+.... ......+... +..+++... ++.+..+|..+++.+..... . ..+..... .+..|++
T Consensus 257 ~tG---~~~w~~~--~~~~~~~~~~--~~~l~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v- 323 (376)
T 3q7m_A 257 RSG---QIMWKRE--LGSVNDFIVD--GNRIYLVDQ---NDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVV- 323 (376)
T ss_dssp TTC---CEEEEEC--CCCEEEEEEE--TTEEEEEET---TCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEE-
T ss_pred CCC---cEEeecc--CCCCCCceEE--CCEEEEEcC---CCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEE-
Confidence 887 5444433 2334444443 446666554 89999999999998776652 1 22222222 2566777
Q ss_pred eccCCCeEEEEeCCCccEEEEeeccccceeE-EEECCCCCEEEEEeCCCcEEEEe
Q psy8285 399 HGKQDCSLKMWEYPRLHLIEELKIHQERILS-AVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 399 ~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
++.+|.|+++|..+++.+.........+.. ... .+..|+.++.+|.|+.|+
T Consensus 324 -~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 324 -GDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp -ECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred -EeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 678999999999999998877653333322 222 245788899999999987
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=8e-10 Score=102.11 Aligned_cols=222 Identities=11% Similarity=0.045 Sum_probs=141.7
Q ss_pred eeeeeeCCCC-EEEEEc------CCeEEEEECCCCceeEEEecCC---CCCCceEEEEEccCCCeEEEEeC---CCCcEE
Q psy8285 168 TSGLDWGYHD-TLAVAL------DTSVYTWNTKTNKTQLLVEYPT---YDNAYISCVAWKPRTTDLAVTNT---CTEYID 234 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~------~~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~---~dg~i~ 234 (507)
+..+++++++ ++++.. +..|.+||+.+++....+.++. .+...+..+++++++..++++.. .++.|.
T Consensus 69 p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~ 148 (343)
T 2qe8_A 69 VLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALI 148 (343)
T ss_dssp EEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEE
T ss_pred eeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEE
Confidence 4467888877 444442 5799999999998766666531 02345689999987666665534 578999
Q ss_pred EEeCCCceeEEEEeecCccE---EEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 235 LWHEQEERLIQKLRTHMHQV---IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~v---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
+||+.+++..+.+..|.... ..+..++..+.+.+.++.+..|. ..+..++|+||++.|+++.
T Consensus 149 v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~ 213 (343)
T 2qe8_A 149 RVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSP 213 (343)
T ss_dssp EEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEE
T ss_pred EEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEe
Confidence 99999888776665432211 22333666666667777665442 2367899999999888887
Q ss_pred -C-CcEEEEEcCCCCCCCC-----ee--eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec--C
Q psy8285 312 -N-NTVKIWDFRQLDAKRP-----QV--NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT--D 380 (507)
Q Consensus 312 -d-~~i~i~d~~~~~~~~~-----~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~ 380 (507)
. ..+..++......... .. ...++.+....++++++| .++++..+ ++.|.+||..+++....... .
T Consensus 214 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~--~~~V~~~d~~~G~~~~~~~~~~~ 290 (343)
T 2qe8_A 214 MHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLA--HSAIGVITSADRAYKLLVTDEKL 290 (343)
T ss_dssp SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGG--GTEEEEEETTTTEEEEEEECGGG
T ss_pred CCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC-CEEEEccC--CCeEEEEECCCCCEEEEEECCce
Confidence 4 5666555431100000 00 111234456789999998 56666654 89999999856654333332 2
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEE
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~ 409 (507)
..+..+++.++++++++ ....+.+.+|
T Consensus 291 ~~p~~va~~~~g~l~v~--~~~~~~~~~f 317 (343)
T 2qe8_A 291 SWTDSFNFGSDGYLYFD--CNQLHHSAPL 317 (343)
T ss_dssp SCEEEEEECTTSCEEEE--ECCGGGSGGG
T ss_pred ecCCeeEECCCCcEEEE--eCcccccccc
Confidence 46899999999887777 3333444333
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.24 E-value=6.5e-10 Score=102.18 Aligned_cols=263 Identities=13% Similarity=0.037 Sum_probs=167.9
Q ss_pred eeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 169 SGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 169 ~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
.++...+++.+-++.++ |..+|. +++....... .........+. +..+.++ +.++.+..+|.. ++......
T Consensus 63 ~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~~~~---~~~~~~~~~~~--~~~l~v~-t~~~~l~~~d~~-g~~~~~~~ 133 (330)
T 3hxj_A 63 CRPSIGKDGTIYFGSDK-VYAINP-DGTEKWRFDT---KKAIVSDFTIF--EDILYVT-SMDGHLYAINTD-GTEKWRFK 133 (330)
T ss_dssp ECCEETTTTEECCSSCE-EEEECC-CGGGGGGSCC--------CCEEEE--TTEEEEE-CTTSEEEEECTT-SCEEEEEE
T ss_pred cceEEecCCcEEEecCc-EEEECC-CCcEEEEEEC---CCCcccCceEE--CCEEEEE-ecCCEEEEEcCC-CCEEEEEc
Confidence 34555556644444444 888886 5554332222 11222223333 4567777 789999999988 77766666
Q ss_pred ecCccEEEEEee-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCC
Q psy8285 249 THMHQVIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKR 327 (507)
Q Consensus 249 ~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~ 327 (507)
.....+.++..+ +..+..++.++.|..+|.. ++ ...........+.++...+++.+++.. +.+..+| .++ +
T Consensus 134 ~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~ 205 (330)
T 3hxj_A 134 TKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GT-EKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---T 205 (330)
T ss_dssp CSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SC-EEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---C
T ss_pred CCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CC-EeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---c
Confidence 555555555554 5557778888999999988 44 333333344556677777788766655 8899999 555 4
Q ss_pred CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeE
Q psy8285 328 PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSL 406 (507)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i 406 (507)
...........+.++...+++ .+++... ++.+..+| .+++.+..+... ..+..+...+++. |.+ ++.+|.|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g-~l~v~t~---~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v--~t~~ggl 277 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISEDG-TIYVTSL---DGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDT-IYF--GSYDGHL 277 (330)
T ss_dssp EEEEECCSSCCCSCCEECTTS-CEEEEET---TTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSC-EEE--ECTTCEE
T ss_pred EEEEEccCCcceeceEECCCC-eEEEEcC---CCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCe-EEE--ecCCCCE
Confidence 555555455668888888877 5655443 78888887 456666655544 2334455665665 445 5668889
Q ss_pred EEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 407 KMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 407 ~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
..+|. +++.+..+......+.++...++++ |..++.+|.+++......++
T Consensus 278 ~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 278 YAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp EEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC-----
T ss_pred EEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccccc
Confidence 99995 7777777665566677888878876 55688999999988765443
No 233
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.24 E-value=7.4e-09 Score=99.12 Aligned_cols=226 Identities=14% Similarity=0.077 Sum_probs=155.4
Q ss_pred cCCeEEEEECCCCceeEEEecCCCCCCceEEEEE-c-cCCCeEEEEe-----------------CCCCcEEEEeCCCcee
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAW-K-PRTTDLAVTN-----------------TCTEYIDLWHEQEERL 243 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~-----------------~~dg~i~iwd~~~~~~ 243 (507)
.++.|.+.|+.+.+..++++++. ......+++ + |+++++++++ ..++.+.+.|..+.+.
T Consensus 110 ~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v 187 (595)
T 1fwx_A 110 ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEV 187 (595)
T ss_dssp TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEE
T ss_pred CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeE
Confidence 57789999999999888777763 456889898 5 9999998882 2345899999999988
Q ss_pred EEEEee-cCccEEEEEeeCCEEEEEecCC--------------------------------------eEEEEECCC--CC
Q psy8285 244 IQKLRT-HMHQVIAMCWNGNLLSCGTIGG--------------------------------------NILHYDVRT--HS 282 (507)
Q Consensus 244 ~~~~~~-~~~~v~~~~~~~~~l~~~~~dg--------------------------------------~i~i~d~~~--~~ 282 (507)
..++.- ....-..++.+++++++.+.+. .|.+.|.++ +.
T Consensus 188 ~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~ 267 (595)
T 1fwx_A 188 AWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASS 267 (595)
T ss_dssp EEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCC
T ss_pred EEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCc
Confidence 887763 2222334444777777766442 367777776 32
Q ss_pred cCceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCC--------CC-CeeeecCCCCCeeEEEEccCCCcE
Q psy8285 283 DYPTAITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDA--------KR-PQVNNQCHLSAVKAIAWCPWEPTL 351 (507)
Q Consensus 283 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~--------~~-~~~~~~~~~~~v~~~~~~~~~~~~ 351 (507)
.....+.. .....++.++|||+++++++ +.+|.++|+.+... .. ..... .-......++|+|+| ++
T Consensus 268 ~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~a 344 (595)
T 1fwx_A 268 LFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-NA 344 (595)
T ss_dssp SSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-EE
T ss_pred eeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCC-eE
Confidence 11222222 23456799999999999888 49999999985310 00 11222 234567899999999 77
Q ss_pred EEEEccCCCCeEEEEeCCC----------CCeeeeeecCCCeEEE------EECCCCCeEEEEeccCCCeE---------
Q psy8285 352 LATGGGICDQTVRLWNSMN----------GKEKCHVKTDSQVTSI------LWSEQYRELVTSHGKQDCSL--------- 406 (507)
Q Consensus 352 ~~~~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~i~~~------~~s~~~~~l~~~~g~~d~~i--------- 406 (507)
+++.. .|++|..||+.. .+.+..+..+...-.. ..+|||++|+++.......+
T Consensus 345 Y~t~~--ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~ 422 (595)
T 1fwx_A 345 YTSLF--LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPE 422 (595)
T ss_dssp EEEET--TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCE
T ss_pred EEEEe--cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCC
Confidence 77665 499999999877 5566777766444222 45799999999754332233
Q ss_pred --EEEeCCCcc
Q psy8285 407 --KMWEYPRLH 415 (507)
Q Consensus 407 --~v~d~~~~~ 415 (507)
.++|+..++
T Consensus 423 ~~ql~dis~~~ 433 (595)
T 1fwx_A 423 NDQLIDISGDK 433 (595)
T ss_dssp EEEEEECSSSS
T ss_pred cceEEEcCCCc
Confidence 889996544
No 234
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.22 E-value=3.5e-09 Score=97.76 Aligned_cols=234 Identities=9% Similarity=-0.049 Sum_probs=145.0
Q ss_pred CceEEEEEccCCCeEEEEeC-CCCcEEEEeCCCceeEEEEe-------ecCccEEEEEee--CCEEEEEec-----CCeE
Q psy8285 209 AYISCVAWKPRTTDLAVTNT-CTEYIDLWHEQEERLIQKLR-------THMHQVIAMCWN--GNLLSCGTI-----GGNI 273 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~-~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~--~~~l~~~~~-----dg~i 273 (507)
..+..++++|+|+.+++... .++.++||.+.+++.. .+. .+...+..++++ ++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 57899999999988777511 2343555555455432 221 244678899994 454444433 5789
Q ss_pred EEEECCCCCcCceeeec------CCCceEEEEEcCCCCEE-EEEe----CCcEEEEEcCCCCCCCCeeeecCC-------
Q psy8285 274 LHYDVRTHSDYPTAITR------EGDVVCGLKWSPNGRYL-ASGS----NNTVKIWDFRQLDAKRPQVNNQCH------- 335 (507)
Q Consensus 274 ~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l-~~~~----d~~i~i~d~~~~~~~~~~~~~~~~------- 335 (507)
.+||+.+++. ...+.. +...+..+++++++..+ ++.. ++.|.+||+.++ +....+..|
T Consensus 96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g---~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG---LAARVLQGYPGIAPED 171 (343)
T ss_dssp EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC---CEEEECTTCTTTSCCS
T ss_pred EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC---CEEEEecCCCcccccc
Confidence 9999987652 222221 22356889999865444 4433 389999998765 222222111
Q ss_pred ----------------------CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC---CCC-----e---eeeeecCCC
Q psy8285 336 ----------------------LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM---NGK-----E---KCHVKTDSQ 382 (507)
Q Consensus 336 ----------------------~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~---~~~-----~---~~~~~~~~~ 382 (507)
...+..++|+|+++.++++... ...+..++.. .+. . +........
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~ 249 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH--STSMYRIKSADLSNLQLTDAELGSKIERYSEKPI 249 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS--CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS
T ss_pred cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC--CCeEEEEEHHHhcCCCCChhhhhcceEecccCCC
Confidence 1236889999999777776652 4466666532 111 0 111112235
Q ss_pred eEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEE
Q psy8285 383 VTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI-HQERILSAVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 451 (507)
...++++++|..+++ ...++.|.+||..+++....... +.....+++|.++++++++.+..+.+.+|
T Consensus 250 pdgia~d~~G~l~va--~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 250 CDGISIDKDHNIYVG--DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp CSCEEECTTCCEEEE--EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred CceEEECCCCCEEEE--ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 667999999988877 67789999999856654333322 24458899999999888877755544433
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=5.3e-09 Score=105.29 Aligned_cols=274 Identities=11% Similarity=0.015 Sum_probs=173.7
Q ss_pred CCEEEEEcCCeEEEEECCCCceeEEEecC-CCC-CCceEEEEEccCCCeEEEEeC-----CCCcEEEEeCCCceeEEEEe
Q psy8285 176 HDTLAVALDTSVYTWNTKTNKTQLLVEYP-TYD-NAYISCVAWKPRTTDLAVTNT-----CTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 176 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~~~~~-----~dg~i~iwd~~~~~~~~~~~ 248 (507)
+.+++++.++.|+.+|..+|+........ ... ...+.+--.. .+..++++.+ .+|.|+.||..+++.+..+.
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 34677778999999999999987766653 100 0112111111 1345665522 27999999999999988775
Q ss_pred ecCcc--------------------------------EEEEEe--eCCEEEEEecCC-------------------eEEE
Q psy8285 249 THMHQ--------------------------------VIAMCW--NGNLLSCGTIGG-------------------NILH 275 (507)
Q Consensus 249 ~~~~~--------------------------------v~~~~~--~~~~l~~~~~dg-------------------~i~i 275 (507)
..... ...+++ ++..++.+..++ .|..
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A 287 (677)
T 1kb0_A 208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA 287 (677)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence 42211 013455 467788777654 4999
Q ss_pred EECCCCCcCceeeec-CC-------CceEEEEEcCCC---CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCC-------
Q psy8285 276 YDVRTHSDYPTAITR-EG-------DVVCGLKWSPNG---RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHL------- 336 (507)
Q Consensus 276 ~d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~---~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~------- 336 (507)
+|.++++..-..... |. .....+....+| +.++.++ +|.++++|.+++ +.+.......
T Consensus 288 lD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG---~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG---KFISAKNFVPVNWASGY 364 (677)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC---CEEEEEESSCCSSEEEE
T ss_pred EECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC---CEeccccccccCccccc
Confidence 999988733222111 21 122223444477 5677777 599999999988 4443332110
Q ss_pred ----CCe------------------------eEEEEccCCCcEEEEEcc-------------------------------
Q psy8285 337 ----SAV------------------------KAIAWCPWEPTLLATGGG------------------------------- 357 (507)
Q Consensus 337 ----~~v------------------------~~~~~~~~~~~~~~~~~~------------------------------- 357 (507)
.++ ..++++|++..+++....
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 444 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK 444 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence 001 257888987655553320
Q ss_pred ---------CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccc-ce
Q psy8285 358 ---------ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE-RI 427 (507)
Q Consensus 358 ---------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~-~i 427 (507)
...+.|..||+.+++.+..+.....+....+...+..+++ ++.||.+++||..+++.+.++....+ ..
T Consensus 445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~--g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 522 (677)
T 1kb0_A 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ--GTADGRLVAYHAATGEKLWEAPTGTGVVA 522 (677)
T ss_dssp EECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred ccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEE--ECCCCcEEEEECCCCceeeeeeCCCCccc
Confidence 0127899999999999888877655555566777888888 78899999999999999999875432 22
Q ss_pred eEEEECCCCCEEEE-EeC----------------CCcEEEEecCC
Q psy8285 428 LSAVLSPDQTCVAA-ASA----------------DETISIWNCFP 455 (507)
Q Consensus 428 ~~~~~s~~~~~l~s-~~~----------------dg~i~iw~~~~ 455 (507)
.-+.|.++|+.++. .+. .+.+..|.+..
T Consensus 523 ~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 523 APSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 34566778875443 222 36777887763
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.18 E-value=5.7e-09 Score=105.31 Aligned_cols=255 Identities=11% Similarity=0.046 Sum_probs=161.0
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecC-CCCC--CceEE-EEEccCCCeEEEEeC-----CCCcEEEEeCCCceeEEEE
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYP-TYDN--AYISC-VAWKPRTTDLAVTNT-----CTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~--~~v~~-~~~~~~~~~l~~~~~-----~dg~i~iwd~~~~~~~~~~ 247 (507)
.+++++.++.|+.+|..+|+........ . .. ..+.+ ... .++ .++++.+ .+|.|+.||..+|+.+..+
T Consensus 123 ~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~-~~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 123 KVYVGVLDGRLEAIDAKTGQRAWSVDTRAD-HKRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCSC-TTSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEEEccCCEEEEEECCCCCEeeeecCcCC-CCCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 3666678999999999999987666542 1 10 11111 111 134 4555412 3789999999999988776
Q ss_pred eecC-------------------------------ccEEEEEe--eCCEEEEEecCCe-------------------EEE
Q psy8285 248 RTHM-------------------------------HQVIAMCW--NGNLLSCGTIGGN-------------------ILH 275 (507)
Q Consensus 248 ~~~~-------------------------------~~v~~~~~--~~~~l~~~~~dg~-------------------i~i 275 (507)
.... .....+++ +...++.+..++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 5210 00013455 4678888887763 999
Q ss_pred EECCCCCcCceeeec--CC-------CceEEEEEcCCCC---EEEEEe-CCcEEEEEcCCCCCCCCeeeecC--------
Q psy8285 276 YDVRTHSDYPTAITR--EG-------DVVCGLKWSPNGR---YLASGS-NNTVKIWDFRQLDAKRPQVNNQC-------- 334 (507)
Q Consensus 276 ~d~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-------- 334 (507)
+|.++++.. -.+.. |. ..........+|+ .++.++ +|.++++|.+++ +.+.....
T Consensus 280 lD~~TG~~~-W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 280 VNADTGEYV-WHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG---ELLSAKGIVPQSWTKG 355 (689)
T ss_dssp EETTTCCEE-EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC---CEEEEEESSCCSSEEE
T ss_pred EEccCCcee-EeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC---CEeccccccccccccc
Confidence 999998733 22221 21 1222223333565 677777 599999999988 44321110
Q ss_pred --------------------CCC-----------CeeEEEEccCCCcEEEEEcc--------------------------
Q psy8285 335 --------------------HLS-----------AVKAIAWCPWEPTLLATGGG-------------------------- 357 (507)
Q Consensus 335 --------------------~~~-----------~v~~~~~~~~~~~~~~~~~~-------------------------- 357 (507)
... .-..++++|+...+++....
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 000 01237888887555443210
Q ss_pred ----------------CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee
Q psy8285 358 ----------------ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK 421 (507)
Q Consensus 358 ----------------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~ 421 (507)
..++.|..||+.+++.+..+..+.....-.+...+..+++ ++.||.++.||.++++.+.+++
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFE--GSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEE--ECCCCcEEEEECCCCccceeee
Confidence 0147899999999999988877655444456667888888 7899999999999999999887
Q ss_pred ccccc-eeEEEECCCCCEEE
Q psy8285 422 IHQER-ILSAVLSPDQTCVA 440 (507)
Q Consensus 422 ~~~~~-i~~~~~s~~~~~l~ 440 (507)
...+. ..-+.|..+|+..+
T Consensus 514 ~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 514 AASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp CSSCCCSCCEEEEETTEEEE
T ss_pred CCCCcccCceEEEECCEEEE
Confidence 54332 23466778887543
No 237
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.15 E-value=2.9e-11 Score=112.71 Aligned_cols=201 Identities=10% Similarity=0.024 Sum_probs=111.5
Q ss_pred CCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCC-Cce
Q psy8285 219 RTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREG-DVV 295 (507)
Q Consensus 219 ~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v 295 (507)
++..++++ +.||.|+.||..+++.+..+.. ..+.+..+ ++..+++++.|+.|+.||..+++. ......+. ..+
T Consensus 8 ~~~~v~~g-s~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVS-TLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEE-ETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHH
T ss_pred eCCEEEEE-cCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCcccc
Confidence 46788888 8999999999999999888776 33333323 566777888999999999987763 22222111 011
Q ss_pred E-EEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 296 C-GLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 296 ~-~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
. +..+. ++..+++++ ++.++.||.+++ +.+..+..+. ...++|++..+++.+. |+.|+.||.++++.
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG---~~~w~~~~~~----~~~~~p~~~~v~~~~~---dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTG---EKQQTLSSAF----ADSLSPSTSLLYLGRT---EYTITMYDTKTREL 152 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEE---EEEEECCCSSSSSC
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCC---cEEEEecCCC----cccccccCCEEEEEec---CCEEEEEECCCCCE
Confidence 0 00111 334566666 699999999988 5555544332 2345666656665544 89999999999998
Q ss_pred eeeeecCCCeEEEEECCCC---CeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC
Q psy8285 374 KCHVKTDSQVTSILWSEQY---RELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT 437 (507)
Q Consensus 374 ~~~~~~~~~i~~~~~s~~~---~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 437 (507)
+..+.... .....+.++. ..+++ ++.+|.|+.||..+++.+.........+....+++++.
T Consensus 153 ~W~~~~~~-~~~~~~~~~~~~~~~v~~--~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 153 RWNATYFD-YAASLPEDDVDYKMSHFV--SNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp CCEEEEEE-ECCBCCCCCTTCCCCEEE--EETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred EEeEeccc-ccCccccCCccccceEEE--ECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 76654321 1223344432 45666 67899999999999999888764332233345556664
No 238
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.14 E-value=5e-07 Score=83.17 Aligned_cols=240 Identities=8% Similarity=-0.046 Sum_probs=155.0
Q ss_pred eeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee
Q psy8285 170 GLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT 249 (507)
Q Consensus 170 ~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~ 249 (507)
|.+..++..+..+....|+..++...+...+.. ....+..++|++.+..|+.+....+.|..+++........+..
T Consensus 38 C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~----~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 38 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN----NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp EEESSSCCEEEEECBSCEEEECTTSCCEEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred ccccccCceeEeecccceEEEeCCCCeeEEeec----CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 344445556666777789999987766554443 3455899999988777777746778999999887654443333
Q ss_pred cCccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCC
Q psy8285 250 HMHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQL 323 (507)
Q Consensus 250 ~~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~ 323 (507)
.......+++ . +++.++-...+.|.+.+++... ..............+++.|.+..|+... . +.|..+++...
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 2233344555 3 4455555567889999987643 2223333345678999999777666655 4 67888887653
Q ss_pred CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccC
Q psy8285 324 DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~ 402 (507)
...............++++|++..++.+..+ .+.|..+|+........+... .....+++. .+ .|+.+ ...
T Consensus 193 ---~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~--~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~t-d~~ 264 (349)
T 3v64_C 193 ---GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK--HHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWT-DWH 264 (349)
T ss_dssp ---SCEESCCSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEE-ETT
T ss_pred ---CcEEEEECCCCCcceEEEeCCCCEEEEEECC--CCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEe-cCC
Confidence 2222222234457899999988888888765 789999998654433333322 467788883 34 44443 456
Q ss_pred CCeEEEEeCCCccEEEEeec
Q psy8285 403 DCSLKMWEYPRLHLIEELKI 422 (507)
Q Consensus 403 d~~i~v~d~~~~~~~~~~~~ 422 (507)
.+.|..++..+++.+..+..
T Consensus 265 ~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 265 TKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp TTEEEEEETTTCCSCEEEEC
T ss_pred CCeEEEEEccCCCccEEecc
Confidence 78898888767766555543
No 239
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.13 E-value=2.7e-07 Score=86.27 Aligned_cols=249 Identities=8% Similarity=-0.051 Sum_probs=159.3
Q ss_pred eeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeec
Q psy8285 171 LDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH 250 (507)
Q Consensus 171 ~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~ 250 (507)
.+..++.++..+....|+.+++...+...+.. ....+..++|.+.+..|+.+....+.|..+++........+...
T Consensus 82 ~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~----~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 82 KALGPEPVLLFANRIDIRQVLPHRSEYTLLLN----NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp EECSSCCEEEEECBSCEEEECTTSCCCEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred CCccccceeEeecCccceeeccCCCcEEEEec----CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 33344556667777889999998776655544 34568899999877777776467789999998876544433322
Q ss_pred CccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCC
Q psy8285 251 MHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLD 324 (507)
Q Consensus 251 ~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~ 324 (507)
......+++ . +.+.++-...+.|.+.++.... ..............+++.|.+..|+.+. . +.|..+++...
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~- 235 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS- 235 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-
Confidence 223334444 3 4445555556788888887543 2233333345678999999777766665 3 67888887653
Q ss_pred CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCC
Q psy8285 325 AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQD 403 (507)
Q Consensus 325 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d 403 (507)
...............|+++|++..|+++... .+.|..+|+........+... .....+++. .+ .|+.+ ....
T Consensus 236 --~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~--~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~t-d~~~ 308 (386)
T 3v65_B 236 --GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK--HHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWT-DWHT 308 (386)
T ss_dssp --SCEEEECSSCSCEEEEEEEGGGTEEEEEETT--TTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEE-ETTT
T ss_pred --CcEEEEECCCCCeeeEEEeCCCCEEEEEECC--CCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEe-eCCC
Confidence 2222222234457899999988888888765 789999998654433333322 467788883 33 44443 5567
Q ss_pred CeEEEEeCCCccEEEEeeccccceeEEEE
Q psy8285 404 CSLKMWEYPRLHLIEELKIHQERILSAVL 432 (507)
Q Consensus 404 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 432 (507)
+.|..++..+++.+..+.........+++
T Consensus 309 ~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 309 KSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp TEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 88999997777766666543333344443
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.10 E-value=4.3e-08 Score=85.05 Aligned_cols=195 Identities=13% Similarity=0.055 Sum_probs=137.5
Q ss_pred ceeeeeeCCCC-EEEEEc---CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 167 YTSGLDWGYHD-TLAVAL---DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
+...++|++++ ++.++. ++.|.++|+.+++......+.. + .....+++. +..|+.+...++.+.++|..+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-S-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-T-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-C-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence 34578999977 444432 5899999999999888777643 2 223345554 55676665789999999999999
Q ss_pred eEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeec-CC---CceEEEEEcCCCCEEEEEe-CCcEEE
Q psy8285 243 LIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITR-EG---DVVCGLKWSPNGRYLASGS-NNTVKI 317 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~l~~~~-d~~i~i 317 (507)
.+.++......-..+++|++.++++..++.|.++|..+.+.......+ .. ..++.+.|. +++.++... ++.|.+
T Consensus 98 v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 98 NIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR 176 (266)
T ss_dssp EEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence 998886432333568888887777777899999999887633222221 11 236678888 675444443 499999
Q ss_pred EEcCCCCCCCCeeeecCC-------------CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC
Q psy8285 318 WDFRQLDAKRPQVNNQCH-------------LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG 371 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 371 (507)
.|..++ +.+..+.-. ......++|+|+++.+++++.. ...+...++...
T Consensus 177 ID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~--~~~v~~i~l~~~ 238 (266)
T 2iwa_A 177 ISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL--WPKLFEIKLHLV 238 (266)
T ss_dssp EETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT--CSEEEEEEEEEC
T ss_pred EECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC--CCeEEEEEEecc
Confidence 999998 555555321 1356899999999999999875 788888887554
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.10 E-value=1.3e-08 Score=94.02 Aligned_cols=217 Identities=14% Similarity=0.105 Sum_probs=138.8
Q ss_pred CCC--EEEE-EcCCeEEEEECCCC----ceeEEEe---c--CCCCCCceEEEEEccCCCeEEEEeCCC------CcEEEE
Q psy8285 175 YHD--TLAV-ALDTSVYTWNTKTN----KTQLLVE---Y--PTYDNAYISCVAWKPRTTDLAVTNTCT------EYIDLW 236 (507)
Q Consensus 175 ~~~--~~~~-~~~~~i~iw~~~~~----~~~~~~~---~--~~~~~~~v~~~~~~~~~~~l~~~~~~d------g~i~iw 236 (507)
.++ +++. ..++.|+++|+.+. +..+..+ + +. .......+...|+| .++++ ..+ |.|.++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~-g~s~Ph~~~~~pdG-i~Vs~-~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVS-GYSRLHTVHCGPDA-IYISA-LGNEEGEGPGGILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHH-CEEEEEEEEECSSC-EEEEE-EEETTSCSCCEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccccc-CCCcccceeECCCe-EEEEc-CCCcCCCCCCeEEEE
Confidence 555 3333 37889999998754 3334432 1 00 11245677889999 55554 333 789999
Q ss_pred eCCCceeEEEEeecCcc---EEEEEe--eCCEEEEEe-------------------cCCeEEEEECCCCCcCceeeecC-
Q psy8285 237 HEQEERLIQKLRTHMHQ---VIAMCW--NGNLLSCGT-------------------IGGNILHYDVRTHSDYPTAITRE- 291 (507)
Q Consensus 237 d~~~~~~~~~~~~~~~~---v~~~~~--~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~- 291 (507)
|..+++.+..+.....+ -+.+-| +++.+++.. ....|.+||+.+++ ....+...
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI~vg~ 248 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSLTLGE 248 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEEESCT
T ss_pred ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEEecCC
Confidence 99999999888733222 234545 677787774 36899999999764 33334332
Q ss_pred -CCceEEEEE--cCCCCEEEEEe------C-CcEEEEEcCCCCCCCCeeee--cC----------------CCCCeeEEE
Q psy8285 292 -GDVVCGLKW--SPNGRYLASGS------N-NTVKIWDFRQLDAKRPQVNN--QC----------------HLSAVKAIA 343 (507)
Q Consensus 292 -~~~v~~~~~--~~~~~~l~~~~------d-~~i~i~d~~~~~~~~~~~~~--~~----------------~~~~v~~~~ 343 (507)
......+.| +|+++++++++ . ++|.+|....+. .+....+ .. -......+.
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 123455656 99999876654 3 677766554320 0111100 00 024578899
Q ss_pred EccCCCcEEEEEccCCCCeEEEEeCCCC---CeeeeeecCC---------------CeEEEEECCCCCeEEEE
Q psy8285 344 WCPWEPTLLATGGGICDQTVRLWNSMNG---KEKCHVKTDS---------------QVTSILWSEQYRELVTS 398 (507)
Q Consensus 344 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~---------------~i~~~~~s~~~~~l~~~ 398 (507)
++||+++++++..+ .+.|.+||+... +.+..+...+ ....++++|||++|+++
T Consensus 328 lS~DGrfLYVSnrg--~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa 398 (462)
T 2ece_A 328 ISLDDKFLYLSLWG--IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT 398 (462)
T ss_dssp ECTTSCEEEEEETT--TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred ECCCCCEEEEEeCC--CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence 99999999998876 899999998633 4444444331 36889999999999995
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.09 E-value=3.1e-11 Score=112.53 Aligned_cols=188 Identities=11% Similarity=0.067 Sum_probs=103.0
Q ss_pred eeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCC
Q psy8285 259 WNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLS 337 (507)
Q Consensus 259 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 337 (507)
.++..+++++.||.|+.||..+++. ...+.. ..+.+..+..+++.+++++ |+.|+.||.+++ +.+..+..+..
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG---~~~w~~~~~~~ 80 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNN---EGLTKLPFTIP 80 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC--------CCSEECSCCHH
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCC---ceeeeeeccCc
Confidence 3688899999999999999998873 333333 3444455566777777766 799999999887 44433332211
Q ss_pred -Cee-EEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 338 -AVK-AIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 338 -~v~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
.+. ...+. .+..+++ ++. ++.++.||..+|+.+..+..+.. ..++|++..+++ ++.++.|+.||.++++
T Consensus 81 ~~~~~sp~~~-~~~~v~~-g~~--dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~--~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYM-GKK--QDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYL--GRTEYTITMYDTKTRE 151 (369)
T ss_dssp HHHTTCSCC------CCC-CEE--EEEEEEECCC-------------------------EEE--EEEEEEEECCCSSSSS
T ss_pred cccccCceEe-cCCEEEE-EeC--CCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEE--EecCCEEEEEECCCCC
Confidence 010 01111 2334444 333 89999999999998877765532 345678888888 7789999999999998
Q ss_pred EEEEeeccccceeEEEECCCC---CEEEEEeCCCcEEEEecCCCCccccee
Q psy8285 416 LIEELKIHQERILSAVLSPDQ---TCVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 416 ~~~~~~~~~~~i~~~~~s~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
.+..+..+. .....++++. ..+++++.||.|+.||..+++......
T Consensus 152 ~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 152 LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 877665322 2333344432 567778999999999999988766554
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.09 E-value=1.1e-09 Score=100.74 Aligned_cols=258 Identities=12% Similarity=0.024 Sum_probs=164.7
Q ss_pred CCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCcc
Q psy8285 175 YHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQ 253 (507)
Q Consensus 175 ~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 253 (507)
.++ +.+++.++.|..|| .+++....... ....+.++...+++. +.++ +.+ +..+|. +++.+..+......
T Consensus 29 ~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~---~~~~~~~~~~~~~g~-l~v~-t~~--l~~~d~-~g~~~~~~~~~~~~ 99 (330)
T 3hxj_A 29 KNGTIYLGSSNKNLYAIN-TDGSVKWFFKS---GEIIECRPSIGKDGT-IYFG-SDK--VYAINP-DGTEKWRFDTKKAI 99 (330)
T ss_dssp TTSCEECSSTTTTTEEEC-TTSCEEESSCG---GGEEEECCEETTTTE-ECCS-SCE--EEEECC-CGGGGGGSCC----
T ss_pred cCCeEEEEcCCCEEEEEC-CCCcEEEEEec---CCCcccceEEecCCc-EEEe-cCc--EEEECC-CCcEEEEEECCCCc
Confidence 344 55566788899999 77776544333 334567777777664 5555 444 888886 55543332222222
Q ss_pred EEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeec
Q psy8285 254 VIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQ 333 (507)
Q Consensus 254 v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~ 333 (507)
.......+..+..++.++.+..+|.. ++ ...........+.++...+++.+++...++.|..+|.. + +......
T Consensus 100 ~~~~~~~~~~l~v~t~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g---~~~~~~~ 173 (330)
T 3hxj_A 100 VSDFTIFEDILYVTSMDGHLYAINTD-GT-EKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-G---TEKWRFK 173 (330)
T ss_dssp -CCEEEETTEEEEECTTSEEEEECTT-SC-EEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-S---CEEEEEE
T ss_pred ccCceEECCEEEEEecCCEEEEEcCC-CC-EEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-C---CEeEEEe
Confidence 22233347778888889999999988 44 23333334445566677778875554446999999988 5 4555554
Q ss_pred CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 334 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 334 ~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
.....+.++...+++. +++.. +.+..+| .+++........ ..+.++...++|...+. +.++.|..+| .
T Consensus 174 ~~~~~~~~~~~d~~g~-l~v~t-----~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~---t~~~gl~~~~-~ 242 (330)
T 3hxj_A 174 TNDAITSAASIGKDGT-IYFGS-----DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT---SLDGHLYAIN-P 242 (330)
T ss_dssp CSSCCCSCCEECTTCC-EEEES-----SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE---ETTTEEEEEC-T
T ss_pred cCCCceeeeEEcCCCE-EEEEe-----CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE---cCCCeEEEEC-C
Confidence 4556677788877774 44421 6789999 777776665544 55778888888765554 4578888887 4
Q ss_pred CccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccc
Q psy8285 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 460 (507)
Q Consensus 413 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 460 (507)
+++.+..+......+..+...+++ .|..++.+|.|..+|. +++...
T Consensus 243 ~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~ 288 (330)
T 3hxj_A 243 DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKW 288 (330)
T ss_dssp TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEE
T ss_pred CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEE
Confidence 666666666544445556666666 4666788888999985 444433
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.09 E-value=2.3e-06 Score=88.45 Aligned_cols=271 Identities=11% Similarity=0.067 Sum_probs=172.1
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
|.++...+++ +.+++.++.|..|+..+++........ ....|.++...+++...+.+ .++-+.+||..+++....
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~--~~~~i~~i~~d~~g~lwigt--~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPIL--GTKQIQAILQQSPTRIWVAT--EGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC------CCCEEEEEEEETTEEEEEE--BSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCC--CCCeeEEEEEcCCCCEEEEE--CCCCeEEEeCCCCeEEEe
Confidence 4456665566 666666667999998877654432211 35678999888887655543 444588999887654433
Q ss_pred Eee-------cCccEEEEEee-CCEEEEEecCCeEEEEECCCCCcCceeee--------cCCCceEEEEEcCCCCEEEEE
Q psy8285 247 LRT-------HMHQVIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAIT--------REGDVVCGLKWSPNGRYLASG 310 (507)
Q Consensus 247 ~~~-------~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~ 310 (507)
... ....|.++..+ ...|..|+.+ -|.+||..+.. ...+. -....|.++...++|.+.+..
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt 327 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDS--FASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGT 327 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTE--EEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEE
T ss_pred ecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCe--EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEE
Confidence 221 13568888884 4445556655 58889877653 11111 123569999999998866554
Q ss_pred eCCcEEEEEcCCCCCCCCeeeec-------CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee-----
Q psy8285 311 SNNTVKIWDFRQLDAKRPQVNNQ-------CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK----- 378 (507)
Q Consensus 311 ~d~~i~i~d~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----- 378 (507)
.++-|..|+.... ....+. -....|.++...++|. +.+... ++-|..||..+++......
T Consensus 328 ~~~Gl~~~~~~~~----~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~---~~Gl~~~~~~~~~~~~~~~~~~~~ 399 (795)
T 4a2l_A 328 YFGGLNYYHPIRN----RFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTN---DGGLNLYNPITQRFTSYTLQEDES 399 (795)
T ss_dssp SSSCEEEECGGGG----SSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEES---SSCEEEECTTTCCEEEECCC----
T ss_pred CCCCeEEeCCCcc----cceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEEC---CCCeEEEcCCCCcEEEEecCCCCc
Confidence 4578889987653 121111 1245689999988874 544332 6679999987765433221
Q ss_pred ----cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee----ccccceeEEEECCCCCEEEEEeCCCcEEE
Q psy8285 379 ----TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK----IHQERILSAVLSPDQTCVAAASADETISI 450 (507)
Q Consensus 379 ----~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~s~~~dg~i~i 450 (507)
....|.++...++++.|.+ |+.++-|..||..+++...-.. .+...|.++...++|++.+.. .+ -+.+
T Consensus 400 ~~~l~~~~v~~i~~d~~g~~lWi--gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~ 475 (795)
T 4a2l_A 400 ARGIGSNNIKAVYVDEKKSLVYI--GTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVR 475 (795)
T ss_dssp --CCSCSCEEEEEEETTTTEEEE--EETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEE
T ss_pred ccCCCCccEEEEEEcCCCCEEEE--EeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeE
Confidence 1246889999888884555 4566779999988765433221 124578999998888866544 44 5888
Q ss_pred EecCCCC
Q psy8285 451 WNCFPRD 457 (507)
Q Consensus 451 w~~~~~~ 457 (507)
|+..+++
T Consensus 476 ~~~~~~~ 482 (795)
T 4a2l_A 476 FNPEQRS 482 (795)
T ss_dssp EETTTTE
T ss_pred EeCCCCe
Confidence 8876543
No 245
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.05 E-value=1.7e-07 Score=92.21 Aligned_cols=278 Identities=13% Similarity=0.018 Sum_probs=172.2
Q ss_pred EEEEEc-CCeEEEEEC-CCCceeEEEecCCCCCC--------c-eEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 178 TLAVAL-DTSVYTWNT-KTNKTQLLVEYPTYDNA--------Y-ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 178 ~~~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~~~--------~-v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
+++++. ++.|+-+|. .+|+..-...... ... . ...++. .+..++++ +.|+.+..+|..+++.+..
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~v~v~-~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQ-DASTKAVMCCDVVDRGLAY--GAGQIVKK-QANGHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCC-CGGGGGGCTTCSCCCCCEE--ETTEEEEE-CTTSEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCEEEEEeCCCCccEEEEEcCCC-CccccccccccccccccEE--ECCEEEEE-eCCCEEEEEECCCCCEEEE
Confidence 555566 789999999 8999876665432 110 0 011222 25577777 8899999999999998877
Q ss_pred EeecCc----cEE-EEEeeCCEEEEEec------CCeEEEEECCCCCcCceeeecCC-----------------------
Q psy8285 247 LRTHMH----QVI-AMCWNGNLLSCGTI------GGNILHYDVRTHSDYPTAITREG----------------------- 292 (507)
Q Consensus 247 ~~~~~~----~v~-~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~----------------------- 292 (507)
...... .+. .....+..+++++. ++.|+.+|.++++..-.......
T Consensus 141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g 220 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccc
Confidence 653220 111 11123455666655 78999999998873221111100
Q ss_pred -------------C-ceEEEEEcCCCCEEEEEe-C----------------CcEEEEEcCCCCCCCCeeeecC--C----
Q psy8285 293 -------------D-VVCGLKWSPNGRYLASGS-N----------------NTVKIWDFRQLDAKRPQVNNQC--H---- 335 (507)
Q Consensus 293 -------------~-~v~~~~~~~~~~~l~~~~-d----------------~~i~i~d~~~~~~~~~~~~~~~--~---- 335 (507)
. ....+++.++...++.+. + +.|..+|.+++ +.+..+.. |
T Consensus 221 ~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG---~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG---MAKWGYQKTPHDEWD 297 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC---CEEEEEESSTTCSSC
T ss_pred cccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCC---cEEEEecCCCCcccc
Confidence 0 001356667666666554 2 25889999887 54444432 1
Q ss_pred ----CCCeeEEEEccCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCC--------------Ce------------
Q psy8285 336 ----LSAVKAIAWCPWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDS--------------QV------------ 383 (507)
Q Consensus 336 ----~~~v~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------------~i------------ 383 (507)
..++ -+...++|+ .+++.+.. +|.++++|..+++.+....... ++
T Consensus 298 ~~~~~~p~-l~~~~~~G~~~~~v~~~~~--~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~ 374 (571)
T 2ad6_A 298 FAGVNQMV-LTDQPVNGKMTPLLSHIDR--NGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHK 374 (571)
T ss_dssp CCCCCCCE-EEEEEETTEEEEEEEEECT--TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCC
T ss_pred cccCCCCE-EEecccCCcEEEEEEEeCC--CcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCC
Confidence 1122 122224564 35555554 8999999999999877654321 01
Q ss_pred --------------EEEEECCCCCeEEEEec-----------------------------------cCCCeEEEEeCCCc
Q psy8285 384 --------------TSILWSEQYRELVTSHG-----------------------------------KQDCSLKMWEYPRL 414 (507)
Q Consensus 384 --------------~~~~~s~~~~~l~~~~g-----------------------------------~~d~~i~v~d~~~~ 414 (507)
..++++|+...+++.+. ..+|.|..||..++
T Consensus 375 ~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG 454 (571)
T 2ad6_A 375 GTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG 454 (571)
T ss_dssp EEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC
T ss_pred ceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCC
Confidence 23577888777776321 13578999999999
Q ss_pred cEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecC
Q psy8285 415 HLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVG 466 (507)
Q Consensus 415 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 466 (507)
+.+.++... ..+....+...+..++.++.||.|+.||..+++.+...+...
T Consensus 455 ~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 455 KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 998887642 233333333356678889999999999999999887766443
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.05 E-value=2.7e-07 Score=84.28 Aligned_cols=235 Identities=8% Similarity=-0.039 Sum_probs=149.8
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee--------------------cCccEEEEEee--CCEEEE
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT--------------------HMHQVIAMCWN--GNLLSC 266 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~v~~~~~~--~~~l~~ 266 (507)
....+++|.++++.++++ ..++.|..||..+++.. .+.. ....+..++++ +..|+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~-~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTS-VQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEE-CTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcCCCCEEEEE-cCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 345778899998878887 78999999998765433 2221 01246788885 466777
Q ss_pred EecCCeEEEEECCCCCcCceeeec-----CCCceEEEEEcC-CCCEEEEEeC------------------CcEEEEEcCC
Q psy8285 267 GTIGGNILHYDVRTHSDYPTAITR-----EGDVVCGLKWSP-NGRYLASGSN------------------NTVKIWDFRQ 322 (507)
Q Consensus 267 ~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~d------------------~~i~i~d~~~ 322 (507)
+...+.|..+|..++. ...+.. .......+++.+ +|++.++... +.|..+|..+
T Consensus 97 ~d~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EETTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EECCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 7666668888876543 112211 113467899999 9987776432 5688888765
Q ss_pred CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--eeeee-ecCCCeEEEEECCCCCeEEEEe
Q psy8285 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EKCHV-KTDSQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~-~~~~~i~~~~~s~~~~~l~~~~ 399 (507)
+ + +..+.........++++|+++.++++... .+.|..|++.... ....+ ...+ ...+++.++|++.++..
T Consensus 175 ~---~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~--~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 175 K---E-TTLLLKELHVPGGAEVSADSSFVLVAEFL--SHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp T---E-EEEEEEEESCCCEEEECTTSSEEEEEEGG--GTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred C---E-EEEeccCCccCcceEECCCCCEEEEEeCC--CCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec
Confidence 4 2 22221122345689999999777777654 7899999987532 11111 2223 78899999998766632
Q ss_pred c--------cCCCeEEEEeCCCccEEEEeeccc----cceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 400 G--------KQDCSLKMWEYPRLHLIEELKIHQ----ERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 400 g--------~~d~~i~v~d~~~~~~~~~~~~~~----~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+ ...+.|..+|. .++.+..+.... ..++.+.+ .+++++++....+.|..+++...
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred CcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 1 11467888886 477776665432 34666766 45666666667788999987643
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.03 E-value=1.8e-07 Score=81.15 Aligned_cols=192 Identities=11% Similarity=0.078 Sum_probs=134.6
Q ss_pred ceEEEEEccCCCeEEEEeCC--CCcEEEEeCCCceeEEEEeecC-ccEEEEEeeCCEEEEEe-cCCeEEEEECCCCCcCc
Q psy8285 210 YISCVAWKPRTTDLAVTNTC--TEYIDLWHEQEERLIQKLRTHM-HQVIAMCWNGNLLSCGT-IGGNILHYDVRTHSDYP 285 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~ 285 (507)
....+.|++++ .|+.+.+. ++.|+++|+.+++.+..+.-.. .....++++++.|..+. .++.+.++|..+.+ ..
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~-v~ 99 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS-NI 99 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTE-EE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCc-EE
Confidence 46899999986 55554233 6799999999999988876322 23345777666555554 57899999999876 33
Q ss_pred eeeecC-CCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCC-----CCCeeEEEEccCCCcEEEEEccC
Q psy8285 286 TAITRE-GDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCH-----LSAVKAIAWCPWEPTLLATGGGI 358 (507)
Q Consensus 286 ~~~~~~-~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~ 358 (507)
..+... .. ...+++|++.++++. ++.|.++|..+. +....+.-. -..++.+.|. ++ .+++....
T Consensus 100 ~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~---~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~- 170 (266)
T 2iwa_A 100 KNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTF---KLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQ- 170 (266)
T ss_dssp EEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETT-
T ss_pred EEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCC---cEEEEEEECCCCcccccceeEEEE-CC-EEEEecCC-
Confidence 444322 22 234566887777666 499999999886 444444321 1236678888 56 67766543
Q ss_pred CCCeEEEEeCCCCCeeeeeecC--------------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 359 CDQTVRLWNSMNGKEKCHVKTD--------------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 359 ~d~~i~i~d~~~~~~~~~~~~~--------------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
++.|.+.|..+++.+..+... .....++|+|+++.++++ +...+.+.+.++...
T Consensus 171 -~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT-gk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 171 -TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT-GKLWPKLFEIKLHLV 238 (266)
T ss_dssp -SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE-ETTCSEEEEEEEEEC
T ss_pred -CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE-CCCCCeEEEEEEecc
Confidence 789999999999998887642 256899999999988886 667788888887543
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.03 E-value=1.6e-07 Score=94.45 Aligned_cols=278 Identities=12% Similarity=0.016 Sum_probs=176.3
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCC--------ce-EEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA--------YI-SCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
+++++.++.|+-+|..+|+..-...... ... .+ ..++. .+..++++ +.|+.|..+|..+++.+....
T Consensus 69 vyv~~~~~~v~AlD~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~v~v~-~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 69 IYTSMSWSRVIAVDAASGKELWRYDPEV-AKVKARTSCCDAVNRGVAL--WGDKVYVG-TLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp EEEEEGGGEEEEEETTTCCEEEEECCCC-CGGGGGGCTTCSCCCCCEE--EBTEEEEE-CTTSEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCeEEEEECCCChhceEECCCC-CccccccccccCCccceEE--ECCEEEEE-cCCCEEEEEECCCCCEeeeec
Confidence 6667788999999999999876665432 100 00 11222 24577777 889999999999999988776
Q ss_pred ecC----ccEE-EEEeeCCEEEEEec------CCeEEEEECCCCCcCceeeec--C------------------------
Q psy8285 249 THM----HQVI-AMCWNGNLLSCGTI------GGNILHYDVRTHSDYPTAITR--E------------------------ 291 (507)
Q Consensus 249 ~~~----~~v~-~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~--~------------------------ 291 (507)
... ..+. .....+..++++.. +|.|+.+|.++++..-..... .
T Consensus 145 ~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~ 224 (668)
T 1kv9_A 145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK 224 (668)
T ss_dssp CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred cCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceee
Confidence 421 1111 11123445555543 589999999988732221110 0
Q ss_pred ----CCceEEEEEcCCCCEEEEEe-CC-------------------cEEEEEcCCCCCCCCeeeecC--CC-------CC
Q psy8285 292 ----GDVVCGLKWSPNGRYLASGS-NN-------------------TVKIWDFRQLDAKRPQVNNQC--HL-------SA 338 (507)
Q Consensus 292 ----~~~v~~~~~~~~~~~l~~~~-d~-------------------~i~i~d~~~~~~~~~~~~~~~--~~-------~~ 338 (507)
......+++.|+...++.+. ++ .|..+|.+++ +.+..+.. |. .+
T Consensus 225 ~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG---~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG---KLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC---CEEEEEESSTTCCSCCCCCSC
T ss_pred eCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC---ceeeEeecCCCccccccCCCC
Confidence 01112468888888887776 44 3899999988 55544432 21 22
Q ss_pred eeEEEEccCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCC-------------C---------------------
Q psy8285 339 VKAIAWCPWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDS-------------Q--------------------- 382 (507)
Q Consensus 339 v~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~--------------------- 382 (507)
.....+..+++ .+++.+.. +|.++++|..+|+.+....... +
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~--~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G 379 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPK--NGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG 379 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCT--TSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred cEEEEeccCCcEEEEEEEECC--CCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcc
Confidence 22223333553 24555544 9999999999999874332111 0
Q ss_pred ---eEEEEECCCCCeEEEEe----------------------------------ccCCCeEEEEeCCCccEEEEeecccc
Q psy8285 383 ---VTSILWSEQYRELVTSH----------------------------------GKQDCSLKMWEYPRLHLIEELKIHQE 425 (507)
Q Consensus 383 ---i~~~~~s~~~~~l~~~~----------------------------------g~~d~~i~v~d~~~~~~~~~~~~~~~ 425 (507)
-..++++|+...+++.. ...+|.|..||..+++.+.+...+.
T Consensus 380 ~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~- 458 (668)
T 1kv9_A 380 AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT- 458 (668)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-
T ss_pred ccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-
Confidence 01256777766655410 1234889999999999988876433
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeec
Q psy8285 426 RILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQV 465 (507)
Q Consensus 426 ~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 465 (507)
+.....+...+.+++.++.|+.++.||..+++.+...+..
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 3344445557788999999999999999999988776544
No 249
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=99.00 E-value=4.8e-06 Score=78.11 Aligned_cols=243 Identities=7% Similarity=-0.028 Sum_probs=157.4
Q ss_pred CCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc----eeEEEEeecC
Q psy8285 176 HDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE----RLIQKLRTHM 251 (507)
Q Consensus 176 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~----~~~~~~~~~~ 251 (507)
..++..+....|+..++.......+.. ....+..++|++.+..|+.+....+.|+.+++... .....+....
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~----~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred cceeEEeccceeEEEccCCcceeEecc----ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 346666778899999998776655543 45678999999987777777456788999998752 2233333333
Q ss_pred ccEEEEEee---CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCC
Q psy8285 252 HQVIAMCWN---GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLDA 325 (507)
Q Consensus 252 ~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~ 325 (507)
.....++++ +++.++-...+.|.+.+++... ..............+++.|.+..|+... + +.|...++...
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-- 235 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-- 235 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC--
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC--
Confidence 455566663 4455555567889999987653 2233333445578999999776666554 3 78888888753
Q ss_pred CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCCeEEEEeccC
Q psy8285 326 KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~ 402 (507)
.........-.....|+++|++..|+.+... .+.|..+|+............ .....+++ ++..|+.+ ...
T Consensus 236 -~~~~~~~~~l~~P~glavd~~~~~lY~aD~~--~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywt-d~~ 309 (400)
T 3p5b_L 236 -DIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWT-DII 309 (400)
T ss_dssp -SCEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEE-ESS
T ss_pred -ccEEEEECCCCceEEEEEEeCCCEEEEEECC--CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEe-cCC
Confidence 2222223334567899999988888888765 789999998655443333321 34667777 34445443 456
Q ss_pred CCeEEEEeCCCccEEEEeeccccceeEEE
Q psy8285 403 DCSLKMWEYPRLHLIEELKIHQERILSAV 431 (507)
Q Consensus 403 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~ 431 (507)
.+.|..+|..+++.+..+........++.
T Consensus 310 ~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 310 NEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp SCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred CCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 78899999878877666654333344443
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.99 E-value=4.2e-07 Score=89.40 Aligned_cols=279 Identities=11% Similarity=0.011 Sum_probs=170.1
Q ss_pred EEEEEc-CCeEEEEEC-CCCceeEEEecCCCCCC---------ceEEEEEccCCCe----EEEEeCCCCcEEEEeCCCce
Q psy8285 178 TLAVAL-DTSVYTWNT-KTNKTQLLVEYPTYDNA---------YISCVAWKPRTTD----LAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 178 ~~~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~----l~~~~~~dg~i~iwd~~~~~ 242 (507)
+++++. ++.|+-+|. .+|+.+-...... ... ....++++|.+.. ++++ +.|+.+.-+|..+|+
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~-~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~-t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQ-NPAARAVACCDLVNRGLAYWPGDGKTPALILKT-QLDGNVAALNAETGE 142 (599)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCC-CGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEE-CTTSEEEEEETTTCC
T ss_pred EEEEeCCCCEEEEEeCCCCCcEEEEECCCC-CccccccccccccccceEEEecCCcceeEEEEE-cCCCEEEEEECCCCC
Confidence 555566 789999999 8998876665432 110 0123455444445 7777 889999999999999
Q ss_pred eEEEEeecCc----cEE-EEEeeCCEEEEEe------cCCeEEEEECCCCCcCceeeecCCC------------------
Q psy8285 243 LIQKLRTHMH----QVI-AMCWNGNLLSCGT------IGGNILHYDVRTHSDYPTAITREGD------------------ 293 (507)
Q Consensus 243 ~~~~~~~~~~----~v~-~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~------------------ 293 (507)
.+........ .+. .....+..+++++ .++.|+.+|.++++..-........
T Consensus 143 ~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~ 222 (599)
T 1w6s_A 143 TVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQ 222 (599)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccc
Confidence 8877653220 111 1112344555555 3789999999988732221111100
Q ss_pred ------------------ce-EEEEEcCCCCEEEEEe-CC----------------cEEEEEcCCCCCCCCeeeecCCC-
Q psy8285 294 ------------------VV-CGLKWSPNGRYLASGS-NN----------------TVKIWDFRQLDAKRPQVNNQCHL- 336 (507)
Q Consensus 294 ------------------~v-~~~~~~~~~~~l~~~~-d~----------------~i~i~d~~~~~~~~~~~~~~~~~- 336 (507)
.+ ..+++.++..+++.+. +. .|..+|.+++ +..-.++...
T Consensus 223 ~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG---~~~W~~q~~~~ 299 (599)
T 1w6s_A 223 KGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG---EAKFGYQKTPH 299 (599)
T ss_dssp TTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC---CEEEEEESSTT
T ss_pred cccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC---ceeeEeecCCC
Confidence 00 1345667777777665 32 7888999887 5544443221
Q ss_pred ---------CCeeEEEEc-cCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCC--------------C--------
Q psy8285 337 ---------SAVKAIAWC-PWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDS--------------Q-------- 382 (507)
Q Consensus 337 ---------~~v~~~~~~-~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------------~-------- 382 (507)
.++. +... .+|+ .+++.+.. +|.++++|.++|+.+....... +
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~--~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~ 376 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDR--NGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGT 376 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECT--TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCC
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECC--CcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCC
Confidence 1121 2222 3553 35555544 9999999999999876554211 0
Q ss_pred ------------------eEEEEECCCCCeEEEEe-------------------------------cc------CCCeEE
Q psy8285 383 ------------------VTSILWSEQYRELVTSH-------------------------------GK------QDCSLK 407 (507)
Q Consensus 383 ------------------i~~~~~s~~~~~l~~~~-------------------------------g~------~d~~i~ 407 (507)
-..++++|+...+++.. .+ ..|.|.
T Consensus 377 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~ 456 (599)
T 1w6s_A 377 RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIK 456 (599)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEE
T ss_pred CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEE
Confidence 12356677666555420 01 347899
Q ss_pred EEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeec
Q psy8285 408 MWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQV 465 (507)
Q Consensus 408 v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 465 (507)
.||+.+++.+.+.... .+...-.....+.+++.++.|+.++.||..+++.+.+.+..
T Consensus 457 A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 457 AYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 9999999988877532 22222122235677888999999999999999988776543
No 251
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.98 E-value=4.2e-06 Score=75.89 Aligned_cols=230 Identities=7% Similarity=-0.023 Sum_probs=146.7
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC----ceeEEEEeecCcc
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE----ERLIQKLRTHMHQ 253 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~ 253 (507)
+|..+....|+..++.+.+...+.. ....+..++|++.+..|+.+...++.|..+++.. ......+......
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~----~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 78 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 78 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred EEEEECCCeEEEEECCCcceEehhc----CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence 4555667789999998877655443 3456889999998777777746678999999876 2222223222223
Q ss_pred EEEEEee--CC-EEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCCC
Q psy8285 254 VIAMCWN--GN-LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLDAKR 327 (507)
Q Consensus 254 v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~~ 327 (507)
...++++ +. +.++-...+.|.++++.... ..............+++.|.+..|+.+. . +.|...++...
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~---- 153 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---- 153 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC----
Confidence 4555553 44 44555667899999987543 2222333345678999999766655554 3 67888887642
Q ss_pred Ceeee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec---CCCeEEEEECCCCCeEEEEeccCC
Q psy8285 328 PQVNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT---DSQVTSILWSEQYRELVTSHGKQD 403 (507)
Q Consensus 328 ~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~g~~d 403 (507)
....+ ...-.....++++|++..++.+... .+.|..+|+........... ......+++. +..++.+ ....
T Consensus 154 ~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~--~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~-d~~~ 228 (316)
T 1ijq_A 154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-DIIN 228 (316)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-ETTT
T ss_pred CeEEEEECCCCCceEEEEeccCCEEEEEECC--CCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEE-ECCC
Confidence 22222 2234567899999988888888765 78999999875433222222 1356778884 3444443 4567
Q ss_pred CeEEEEeCCCccEEEEee
Q psy8285 404 CSLKMWEYPRLHLIEELK 421 (507)
Q Consensus 404 ~~i~v~d~~~~~~~~~~~ 421 (507)
+.|..++..+++.+..+.
T Consensus 229 ~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 229 EAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TEEEEEETTTCCCCEEEE
T ss_pred CeEEEEeCCCCcceEEEe
Confidence 889999987776655554
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.96 E-value=2.8e-07 Score=78.83 Aligned_cols=188 Identities=10% Similarity=0.143 Sum_probs=125.4
Q ss_pred eeEEEEeecCcc--EEEEEe-eCCEEEEEecCC--eEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--CCc
Q psy8285 242 RLIQKLRTHMHQ--VIAMCW-NGNLLSCGTIGG--NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--NNT 314 (507)
Q Consensus 242 ~~~~~~~~~~~~--v~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~ 314 (507)
+.+.++. |... ...+.| ++.++.+.+.+| .|+++|+.+++. .....-. .........+++..|.... ++.
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKT-LQQIELG-KRYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEec-CCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcE-EEEEecC-CccceeEEEEeCCEEEEEEeeCCE
Confidence 3445553 4443 367778 455556666665 899999999873 3333322 2332222333455666666 599
Q ss_pred EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC------CCeEEEEE
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD------SQVTSILW 388 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------~~i~~~~~ 388 (507)
+.+||..+. +.+.++.... ....+++++..++++.+ ++.|.++|..+.+.+..+... ..++.+.|
T Consensus 109 v~v~D~~t~---~~~~ti~~~~---eG~glt~dg~~L~~SdG---s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 109 GFVWNIRNL---RQVRSFNYDG---EGWGLTHNDQYLIMSDG---TPVLRFLDPESLTPVRTITVTAHGEELPELNELEW 179 (262)
T ss_dssp EEEEETTTC---CEEEEEECSS---CCCCEEECSSCEEECCS---SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEECccC---cEEEEEECCC---CceEEecCCCEEEEECC---CCeEEEEcCCCCeEEEEEEeccCCccccccceeEE
Confidence 999999987 6777766432 22334467777888764 789999999999988877642 33556777
Q ss_pred CCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc------------ccceeEEEECCCCCEEEEEeC
Q psy8285 389 SEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH------------QERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 389 s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~s~~~ 444 (507)
. +|+ |.+. ...++.|.+.|..+++.+..+... ....+.|+|+|+++.|+..+.
T Consensus 180 ~-~G~-lyan-~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 180 V-DGE-IFAN-VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp E-TTE-EEEE-ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred E-CCE-EEEE-EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 6 665 4442 456789999999999998877532 124688999999887777664
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.95 E-value=1.8e-07 Score=80.11 Aligned_cols=181 Identities=15% Similarity=0.125 Sum_probs=124.3
Q ss_pred cceeeeeeCCCCEE-EEEcCC--eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 166 FYTSGLDWGYHDTL-AVALDT--SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 166 ~~i~~~~~s~~~~~-~~~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
-+...+.|+.+.++ +.+.+| .|+.+|+++++......+.. ........++++.|......++.+.+||..+.+
T Consensus 43 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~----~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 43 AFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK----RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT----TCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred cccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC----ccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence 35667888843333 445554 89999999999988877642 333322333455666664779999999999999
Q ss_pred eEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeec--CC---CceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 243 LIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITR--EG---DVVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
.+.++.... .-+.++++++.|+.+..++.|.++|..+.+. ...+.- .. ..++.+.|. +|+..+..- ++.|.
T Consensus 119 ~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v-~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 119 QVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTP-VRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp EEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeE-EEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEE
Confidence 999988533 3357778888777777788899999998763 222221 12 334567776 676554443 48999
Q ss_pred EEEcCCCCCCCCeeeecC------------CCCCeeEEEEccCCCcEEEEEc
Q psy8285 317 IWDFRQLDAKRPQVNNQC------------HLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
+.|.+++ +.+..+.. ...-.+.|+|+|+++.+++++-
T Consensus 196 vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 196 RIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9999988 44444332 1235689999999988888874
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.94 E-value=3.7e-07 Score=77.51 Aligned_cols=182 Identities=16% Similarity=0.073 Sum_probs=125.9
Q ss_pred ccceeeeeeCCCCEEEEE-cC--CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 165 DFYTSGLDWGYHDTLAVA-LD--TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 165 ~~~i~~~~~s~~~~~~~~-~~--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
..+...+.|+++.++.++ .. ..|+.+|+++++......++. + ..-..+++ .++.|......++.+.+||..+.
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~-~fgeGi~~--~~~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPP-P-YFGAGIVA--WRDRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-T-CCEEEEEE--ETTEEEEEESSSSEEEEEETTTT
T ss_pred ccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-C-cceeEEEE--eCCEEEEEEeeCCEEEEEECCcC
Confidence 345778899886555544 33 599999999999988887643 1 11123344 35566665478999999999999
Q ss_pred eeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeec--CC---CceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 242 RLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITR--EG---DVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
+.+.++.... .-+.++++++.|+.+..++.|.++|..+.+. ...+.- +. ..++.+.+. +|+.++..- +..|
T Consensus 96 ~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I 172 (243)
T 3mbr_X 96 TPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRI 172 (243)
T ss_dssp EEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEE
T ss_pred cEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeE
Confidence 9999988543 3367888888777777789999999998763 222221 21 245566665 666554443 4899
Q ss_pred EEEEcCCCCCCCCeeeecC-------------CCCCeeEEEEccCCCcEEEEEc
Q psy8285 316 KIWDFRQLDAKRPQVNNQC-------------HLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
.+.|.+++ +.+..+.. ...-.+.|+++|+++.+++++-
T Consensus 173 ~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 173 ARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99999987 44433321 1235689999999989998874
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.93 E-value=3.6e-06 Score=76.04 Aligned_cols=225 Identities=11% Similarity=0.038 Sum_probs=136.8
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC--CeEEEEECCCCCcC
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG--GNILHYDVRTHSDY 284 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d--g~i~i~d~~~~~~~ 284 (507)
.....++|+++++.+++- ..++.|..||.... ....+. .......+++ +++++++.... ..|..+|..+++.
T Consensus 32 ~~pegia~~~~g~lyv~d-~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~- 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTN-HEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV- 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEE-TTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-
T ss_pred CCcceEEECCCCCEEEEe-CCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-
Confidence 457889999998855555 67899999997753 333332 3456778888 56755554332 2477777666542
Q ss_pred ceeee-cCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCee---------eecCCCCCeeEEEEccCCCcEEE
Q psy8285 285 PTAIT-REGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQV---------NNQCHLSAVKAIAWCPWEPTLLA 353 (507)
Q Consensus 285 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~ 353 (507)
..... ........++..+++..+++.. ++.|+.+|...+.. .+. ...........+ +|+++.+++
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~--~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG--SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE--EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE--eEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence 11111 1222344555555555455443 48888888764200 010 001111234555 888878888
Q ss_pred EEccCCCCeEEEEeCCC-CCe--eeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE--Eeecccccee
Q psy8285 354 TGGGICDQTVRLWNSMN-GKE--KCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE--ELKIHQERIL 428 (507)
Q Consensus 354 ~~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~--~~~~~~~~i~ 428 (507)
+... .+.|..|++.. ++. ...+........++++++|+++++ ....+.|.++|.. ++... .+.......+
T Consensus 184 ~d~~--~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va--~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~ 258 (306)
T 2p4o_A 184 SNTE--KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPD-RSTTIIAQAEQGVIGST 258 (306)
T ss_dssp EETT--TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTT-CCEEEEECGGGTCTTEE
T ss_pred EeCC--CCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE--eCCCCeEEEECCC-CCEEEEeecccccCCce
Confidence 7764 88999999874 332 122222234567899999987666 5567889999965 55432 3333335678
Q ss_pred EEEEC---CCCCEEEEEeCCC
Q psy8285 429 SAVLS---PDQTCVAAASADE 446 (507)
Q Consensus 429 ~~~~s---~~~~~l~s~~~dg 446 (507)
+++|. |+++.|+.++..+
T Consensus 259 ~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 259 AVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECCSTTTTTEEEEEECTT
T ss_pred EEEEecccCCCCEEEEECCCC
Confidence 99998 8888777666544
No 256
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.93 E-value=6.3e-06 Score=75.81 Aligned_cols=240 Identities=13% Similarity=0.054 Sum_probs=151.5
Q ss_pred eEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEee--CCEE-EEEecCCeEEEEECCCCCcCcee
Q psy8285 211 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLL-SCGTIGGNILHYDVRTHSDYPTA 287 (507)
Q Consensus 211 v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~~~~dg~i~i~d~~~~~~~~~~ 287 (507)
.+|.+..+ ..+|+.+ ....|+..++........+. .......++|+ +..| .+-...+.|..+++.... ....
T Consensus 36 ~~C~~~~~-~~~ll~~--~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~ 110 (349)
T 3v64_C 36 RSCKALGP-EPVLLFA--NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEV 110 (349)
T ss_dssp SCEEESSS-CCEEEEE--CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE
T ss_pred Cccccccc-CceeEee--cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC-ceEE
Confidence 34555445 3455555 45568888887655443333 34457888884 3444 444567889999988654 2222
Q ss_pred eecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC-CeEE
Q psy8285 288 ITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD-QTVR 364 (507)
Q Consensus 288 ~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d-~~i~ 364 (507)
..........+++.+.+..|+.+. .+.|.+.++... ...............++++|.+..++.+..+ . +.|.
T Consensus 111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~---~~~~l~~~~l~~P~~iavdp~~g~ly~td~~--~~~~I~ 185 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---HRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIE 185 (349)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECTTCSCEEEEEEETTTTEEEEEECS--SSCEEE
T ss_pred EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC---ceEEEEeCCCCCcceEEEecCcCeEEEeccC--CCCEEE
Confidence 322334457889998666665555 389999998754 2222233334567899999987788887764 5 8899
Q ss_pred EEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEe
Q psy8285 365 LWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 365 i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 443 (507)
.+++........+... .....++++|++..|+.+ -...+.|..+|+........+.........+++ ..+..+++-.
T Consensus 186 r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~a-D~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~ 263 (349)
T 3v64_C 186 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDW 263 (349)
T ss_dssp EEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEET
T ss_pred EEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEE-ECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecC
Confidence 9998654433333222 568999999988877775 456788999998754333333333344567777 3445555555
Q ss_pred CCCcEEEEecCCCCcccce
Q psy8285 444 ADETISIWNCFPRDKKRKA 462 (507)
Q Consensus 444 ~dg~i~iw~~~~~~~~~~~ 462 (507)
..+.|..++..+++....+
T Consensus 264 ~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 264 HTKSINSANKFTGKNQEII 282 (349)
T ss_dssp TTTEEEEEETTTCCSCEEE
T ss_pred CCCeEEEEEccCCCccEEe
Confidence 6778888886666555443
No 257
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.93 E-value=1e-06 Score=86.84 Aligned_cols=279 Identities=12% Similarity=0.026 Sum_probs=169.6
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCc-------eEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeec
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAY-------ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH 250 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~ 250 (507)
+++++.++.|+-+|..+|+.+-...... .... ...++. .+..++++ +.++.|.-+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~-~~~~~~~~~~~~~g~a~--~~~~v~~~-t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRL-PDDIRPCCDVVNRGAAI--YGDKVFFG-TLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCC-CTTCCCSSCSCCCCCEE--ETTEEEEE-ETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCC-CcccccccccCCCccEE--ECCEEEEE-eCCCEEEEEECCCCCEEeeecCC
Confidence 5556664569999999999877666532 1110 011222 24567777 78999999999999988776543
Q ss_pred Cc----cEE-E-EEeeC----C-EEEEEec------CCeEEEEECCCCCcCceeeecCCC--------------------
Q psy8285 251 MH----QVI-A-MCWNG----N-LLSCGTI------GGNILHYDVRTHSDYPTAITREGD-------------------- 293 (507)
Q Consensus 251 ~~----~v~-~-~~~~~----~-~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~-------------------- 293 (507)
.. .+. . +..++ + .+++++. ++.|+.+|..+++..-. ......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~-~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM-RPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE-EESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEee-cCCCccccccccCccccccccccccc
Confidence 21 111 1 11233 2 5656543 78999999998763221 111000
Q ss_pred ---------------------ceEEEEEcCCCCEEEEEe---------------------C----CcEEEEEcCCCCCCC
Q psy8285 294 ---------------------VVCGLKWSPNGRYLASGS---------------------N----NTVKIWDFRQLDAKR 327 (507)
Q Consensus 294 ---------------------~v~~~~~~~~~~~l~~~~---------------------d----~~i~i~d~~~~~~~~ 327 (507)
.-..+++.|+..+++.+. | +.|..+|.+++ +
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG---~ 302 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG---E 302 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC---C
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCC---C
Confidence 001346667766766554 1 47889999888 5
Q ss_pred CeeeecC--CC--------CCeeEEEEc-cCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCCC------------
Q psy8285 328 PQVNNQC--HL--------SAVKAIAWC-PWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQ------------ 382 (507)
Q Consensus 328 ~~~~~~~--~~--------~~v~~~~~~-~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------ 382 (507)
.+-.++. |. .++. +... .+|+ .+++.++. +|.++++|..+|+.+..+.....
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~--~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g 379 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADR--NGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTG 379 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECT--TSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTC
T ss_pred EEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECC--CceEEEEECCCCCEecccccccCccccccccccCC
Confidence 5544432 21 1111 1221 3564 35555554 99999999999998765543210
Q ss_pred ----------------------------------eEEEEECCCCCeEEEEec----------------------------
Q psy8285 383 ----------------------------------VTSILWSEQYRELVTSHG---------------------------- 400 (507)
Q Consensus 383 ----------------------------------i~~~~~s~~~~~l~~~~g---------------------------- 400 (507)
-..++++|+...+++...
T Consensus 380 ~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p 459 (582)
T 1flg_A 380 RPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKR 459 (582)
T ss_dssp CEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred CEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecC
Confidence 013466776666655210
Q ss_pred ---cCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCC
Q psy8285 401 ---KQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSG 468 (507)
Q Consensus 401 ---~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 468 (507)
..+|.|..||+.+++.+.+..... ++..-.....+.+++.++.||.++.||..+++.+.+.+.....
T Consensus 460 ~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~ 529 (582)
T 1flg_A 460 MYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI 529 (582)
T ss_dssp SCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCc
Confidence 135789999999999988776432 2222222234677888999999999999999998877654433
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.92 E-value=3.7e-07 Score=78.12 Aligned_cols=185 Identities=8% Similarity=0.100 Sum_probs=124.1
Q ss_pred eEEEEeecCcc--EEEEEee-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEE
Q psy8285 243 LIQKLRTHMHQ--VIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--NNTVKI 317 (507)
Q Consensus 243 ~~~~~~~~~~~--v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i 317 (507)
.+.++ .|... ...+.|+ +.+..+.+.+|.|+++|+.+++..... ......-..+++ +++.|.... ++.+.+
T Consensus 45 Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEEEE
T ss_pred EEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEEEE
Confidence 34444 34433 3678885 445666677789999999998744433 222212233555 444555555 599999
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC------CCeEEEEECCC
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD------SQVTSILWSEQ 391 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------~~i~~~~~s~~ 391 (507)
||..+. +.+.++... ..-..++ +++..++++.+ ++.|.++|..+.+.+..+... ..++.+.|. +
T Consensus 121 ~D~~Tl---~~~~ti~~~-~eGwGLt--~Dg~~L~vSdG---s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 121 WSGMPP---QRERTTRYS-GEGWGLC--YWNGKLVRSDG---GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp EETTTT---EEEEEEECS-SCCCCEE--EETTEEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EECCcC---cEEEEEeCC-CceeEEe--cCCCEEEEECC---CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 999987 666666542 2223444 56777777764 899999999999988877642 245677777 6
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccEEEEeecc-------------ccceeEEEECCCCCEEEEEe
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-------------QERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~s~~ 443 (507)
|+ |.+. ...++.|.+.|..+++.+..+... ....+.|+|+|+++.|+..+
T Consensus 191 G~-lyan-vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 191 GV-IYAN-IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TE-EEEE-ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CE-EEEE-ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 65 4442 456789999999999998877532 13568899999876665555
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.90 E-value=1.7e-07 Score=80.17 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=126.3
Q ss_pred cceeeeeeCCCCEE-EEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 166 FYTSGLDWGYHDTL-AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 166 ~~i~~~~~s~~~~~-~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
-+...+.++.+.++ +.+.++.|+.+|+++++..... ++. ...-..+++ +++.|......++.+.+||..+.+.+
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~--~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLG--NIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECT--TCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC--CcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEE
Confidence 34567888865544 4457788999999999988777 642 212233554 45555555478999999999999999
Q ss_pred EEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeee--cCC---CceEEEEEcCCCCEEEEEe-CCcEEEE
Q psy8285 245 QKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAIT--REG---DVVCGLKWSPNGRYLASGS-NNTVKIW 318 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~---~~v~~~~~~~~~~~l~~~~-d~~i~i~ 318 (507)
.++... ..-+.++++++.|+.+..++.|.++|..+.+. ...+. .+. ..++.+.|. +|++.+..- +..|.+.
T Consensus 130 ~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 130 RTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred EEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence 998853 33467888999888888889999999998763 22222 122 234667777 776554443 4899999
Q ss_pred EcCCCCCCCCeeeecC-------------CCCCeeEEEEccCCCcEEEEEc
Q psy8285 319 DFRQLDAKRPQVNNQC-------------HLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
|.+++ +.+..+.. ...-.+.|+++|+++.+++++-
T Consensus 207 Dp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 207 DPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred eCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99988 44444321 1235689999999999999874
No 260
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.88 E-value=5e-06 Score=77.67 Aligned_cols=239 Identities=13% Similarity=0.058 Sum_probs=152.1
Q ss_pred EEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEee--CC-EEEEEecCCeEEEEECCCCCcCceeee
Q psy8285 213 CVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GN-LLSCGTIGGNILHYDVRTHSDYPTAIT 289 (507)
Q Consensus 213 ~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 289 (507)
|.+..+ ..+|+.+ ....|+.+++.......... .......++|+ +. ++++-...+.|..+++.... ......
T Consensus 81 C~~~~~-~~~l~~~--~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~~ 155 (386)
T 3v65_B 81 CKALGP-EPVLLFA--NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVVS 155 (386)
T ss_dssp EEECSS-CCEEEEE--CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEEEEC
T ss_pred ECCccc-cceeEee--cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEEEe
Confidence 444444 3455555 45678888887665544443 34457788884 34 44455567889999988654 222222
Q ss_pred cCCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC-CeEEEE
Q psy8285 290 REGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD-QTVRLW 366 (507)
Q Consensus 290 ~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d-~~i~i~ 366 (507)
........+++.+.+..|+... . +.|.+.++... ...............++++|.+..++.+..+ . +.|..+
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~---~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r~ 230 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---HRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEAS 230 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC---SCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEEE
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC---ceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEEE
Confidence 2233456788998666666555 3 88988888754 2222333334567899999988788887754 5 789999
Q ss_pred eCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC
Q psy8285 367 NSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD 445 (507)
Q Consensus 367 d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d 445 (507)
++............ .....++++|++..|+.+ -...+.|..+|+........+.........+++ ..+..+++-...
T Consensus 231 ~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~ 308 (386)
T 3v65_B 231 SMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT 308 (386)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEE-ETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred eCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEE-ECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCC
Confidence 98654433333332 468999999988877775 456788999998754333333333344567777 344555666667
Q ss_pred CcEEEEecCCCCccccee
Q psy8285 446 ETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 446 g~i~iw~~~~~~~~~~~~ 463 (507)
+.|..++..+++....+.
T Consensus 309 ~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 309 KSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TEEEEEETTTCCSCEEEE
T ss_pred CeEEEEECCCCcceEEEc
Confidence 888888866666555443
No 261
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.85 E-value=8.9e-06 Score=73.55 Aligned_cols=234 Identities=9% Similarity=-0.061 Sum_probs=147.2
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee-EEEEeecCccEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-IQKLRTHMHQVIA 256 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~ 256 (507)
+|..+....|+..++............ .......++|.+.+..|+.+....+.|..+++..... ...+.........
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~--~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVG--GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEE--EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEec--CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 566667788999999876421111111 2245779999997777777646778999999876532 1222222223344
Q ss_pred EEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCCCCee
Q psy8285 257 MCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 257 ~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~~~~~ 330 (507)
+++ ++++.++-...+.|.++++.... ..............+++.|.+..|+.+. . +.|...++... ....
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~---~~~~ 159 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---SRFI 159 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC---SCEE
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC---CeEE
Confidence 554 34455555567889999987643 2222334445678999999766666554 2 77888887643 2222
Q ss_pred eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEE
Q psy8285 331 NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 331 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~ 409 (507)
.....-.....++++|++..++.+... .+.|..+|+........... ......+++.. ..++.+ ....+.|..+
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~--~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywt-d~~~~~V~~~ 234 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAK--LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWT-DWSTHSILAC 234 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEE-ETTTTEEEEE
T ss_pred EEECCCCCccEEEEeccCCEEEEEECC--CCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEE-ecCCCeEEEE
Confidence 222233457899999988888888765 88999999865433333332 24567777753 344443 4567899999
Q ss_pred eCCCccEEEEeec
Q psy8285 410 EYPRLHLIEELKI 422 (507)
Q Consensus 410 d~~~~~~~~~~~~ 422 (507)
+..+++....+..
T Consensus 235 ~~~~G~~~~~i~~ 247 (318)
T 3sov_A 235 NKYTGEGLREIHS 247 (318)
T ss_dssp ETTTCCSCEEEEC
T ss_pred ECCCCCceEEEeC
Confidence 9887776655543
No 262
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.84 E-value=6e-07 Score=90.29 Aligned_cols=259 Identities=12% Similarity=0.088 Sum_probs=157.6
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecCCCCC--CceEE-EEEccCCCeEEEEeC-----CCCcEEEEeCCCceeEEEEe
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDN--AYISC-VAWKPRTTDLAVTNT-----CTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~--~~v~~-~~~~~~~~~l~~~~~-----~dg~i~iwd~~~~~~~~~~~ 248 (507)
.+++++.++.|+.+|..+|+..-...... .. ..+.+ ... .+..++++.+ .+|.|..+|..+++.+..+.
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEeeeeccCC-CCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 36666789999999999999876665521 10 11111 111 1345555512 25899999999999988775
Q ss_pred ecC---c----------------------------cEEEEEe--eCCEEEEEecCC-------------------eEEEE
Q psy8285 249 THM---H----------------------------QVIAMCW--NGNLLSCGTIGG-------------------NILHY 276 (507)
Q Consensus 249 ~~~---~----------------------------~v~~~~~--~~~~l~~~~~dg-------------------~i~i~ 276 (507)
... . ....+++ +...++.++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 310 0 0012455 356787887665 38999
Q ss_pred ECCCCCcCceeeec-CC-------CceEEEEEcCCCC---EEEEEe-CCcEEEEEcCCCCCCCCeeeecCCC--------
Q psy8285 277 DVRTHSDYPTAITR-EG-------DVVCGLKWSPNGR---YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHL-------- 336 (507)
Q Consensus 277 d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-------- 336 (507)
|.++++..-..... |. .+.....+..+|+ .++.++ +|.++++|.+++ +.+.......
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG---KLISAEKFGKVTWAEKVD 352 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC---CEEEEEESSCCCSEEEEC
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC---CEeccccccccccccccc
Confidence 99988733222211 21 2233233334665 567777 599999999888 4332111000
Q ss_pred ----CC------------------------eeEEEEccCCCcEEEEE---------------------------------
Q psy8285 337 ----SA------------------------VKAIAWCPWEPTLLATG--------------------------------- 355 (507)
Q Consensus 337 ----~~------------------------v~~~~~~~~~~~~~~~~--------------------------------- 355 (507)
.+ -..++++|+...+++..
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 00 01267777765544421
Q ss_pred ccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccce-eEEEECC
Q psy8285 356 GGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERI-LSAVLSP 434 (507)
Q Consensus 356 ~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i-~~~~~s~ 434 (507)
....++.|..||+.+++.+.............+...+..+++ ++.|+.++.||.++++.+..++...... .-+.+..
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~--g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~ 510 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL 510 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEE--ECCcccchhhhhhcChhheEecCCCCcccCceEEEE
Confidence 011248899999999999887776654444445556788888 7889999999999999998887543211 2234445
Q ss_pred CCC-EEEEEe
Q psy8285 435 DQT-CVAAAS 443 (507)
Q Consensus 435 ~~~-~l~s~~ 443 (507)
+|+ +++.++
T Consensus 511 ~G~~yva~~~ 520 (668)
T 1kv9_A 511 AGRQYVAIMA 520 (668)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 666 444443
No 263
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.81 E-value=1.8e-05 Score=71.57 Aligned_cols=235 Identities=10% Similarity=-0.023 Sum_probs=146.8
Q ss_pred CeEEEEeCCCCcEEEEeCCCce-eEEEEeecCccEEEEEee---CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceE
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEER-LIQKLRTHMHQVIAMCWN---GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVC 296 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 296 (507)
.+|+.+ ....|+..++.... ....+........+++|+ +.++.+-...+.|..+++.............-....
T Consensus 5 p~ll~~--~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~ 82 (318)
T 3sov_A 5 PLLLYA--NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 82 (318)
T ss_dssp CEEEEE--CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred cEEEEE--ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence 355555 46789999987653 122222223356688884 445555556788999998875422233333334566
Q ss_pred EEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee
Q psy8285 297 GLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK 374 (507)
Q Consensus 297 ~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 374 (507)
.+++.+.+..|+.+. .+.|.++++... ...............+++.|.+..++.+..+ ..+.|...++......
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~---~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGS---LRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRF 158 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSCE
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCC---cEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCeE
Confidence 789998666665554 389999998753 2222222344567899999987677777632 2578988887643332
Q ss_pred eeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 375 CHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 375 ~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
...... .....++++|++..|+.+ -...+.|..+|+........+.+.......+++.. +..+.+-...+.|..++.
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWA-DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNK 236 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred EEEECCCCCccEEEEeccCCEEEEE-ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence 222222 567899999988877775 45678999999864333222232334456677743 345555556788999998
Q ss_pred CCCCccccee
Q psy8285 454 FPRDKKRKAR 463 (507)
Q Consensus 454 ~~~~~~~~~~ 463 (507)
.+++....+.
T Consensus 237 ~~G~~~~~i~ 246 (318)
T 3sov_A 237 YTGEGLREIH 246 (318)
T ss_dssp TTCCSCEEEE
T ss_pred CCCCceEEEe
Confidence 7776654443
No 264
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.81 E-value=4.2e-05 Score=69.24 Aligned_cols=231 Identities=13% Similarity=0.003 Sum_probs=144.0
Q ss_pred eEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEee--CCEEE-EEecCCeEEEEECCCC---CcCceeeecCCCce
Q psy8285 222 DLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLS-CGTIGGNILHYDVRTH---SDYPTAITREGDVV 295 (507)
Q Consensus 222 ~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v 295 (507)
+|+.+ ....|+..|+.+.+....+. .......+.|+ ++.|+ +-...+.|..+++... ..........-...
T Consensus 3 ~ll~~--~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFT--NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEE--CBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEE--CCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 45555 45679999998876555444 34557788884 44444 4455688999998761 21222222222455
Q ss_pred EEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 296 CGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
..+++.+.+..|+.+. .+.|.++++... ...............++++|.+..++.+..+ ..+.|..+++.. +.
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~---~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG-~~ 154 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG-VD 154 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS-CC
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCC---ceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCC-CC
Confidence 7899987666665554 489999998753 2222222234567899999987788877653 127898888754 33
Q ss_pred eeee-ecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec--cccceeEEEECCCCCEEEEEeCCCcEE
Q psy8285 374 KCHV-KTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI--HQERILSAVLSPDQTCVAAASADETIS 449 (507)
Q Consensus 374 ~~~~-~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~i~ 449 (507)
...+ ... .....++++|++..|+.+ -...+.|..+|+........... .......+++. .+..+++-...+.|.
T Consensus 155 ~~~~~~~~~~~P~gla~d~~~~~lY~~-D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 155 IYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (316)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred eEEEEECCCCCceEEEEeccCCEEEEE-ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence 3333 222 568899999988888775 45677999999874322222221 12334677774 355555666678899
Q ss_pred EEecCCCCcccce
Q psy8285 450 IWNCFPRDKKRKA 462 (507)
Q Consensus 450 iw~~~~~~~~~~~ 462 (507)
.++..+++....+
T Consensus 233 ~~~~~~g~~~~~i 245 (316)
T 1ijq_A 233 SANRLTGSDVNLL 245 (316)
T ss_dssp EEETTTCCCCEEE
T ss_pred EEeCCCCcceEEE
Confidence 9998777655444
No 265
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.80 E-value=4.5e-05 Score=78.83 Aligned_cols=273 Identities=11% Similarity=0.079 Sum_probs=175.3
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecC----CCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYP----TYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
.|.++...+++ +.+++.++.|.+|+..+++........ ......|.++...++|...+.+ .+ -|.+||..++
T Consensus 216 ~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt--~~-Gl~~~~~~~~ 292 (795)
T 4a2l_A 216 QIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT--FN-DLNIYHEGTD 292 (795)
T ss_dssp CEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE--SS-CEEEEETTTT
T ss_pred eeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe--CC-hhheEcCCCC
Confidence 45666666666 666666667999998877654432210 0024679999999888766544 44 5889998876
Q ss_pred eeEEEEee-------cCccEEEEEee-CCEEEEEecCCeEEEEECCCCCcCceeee-------cCCCceEEEEEcCCCCE
Q psy8285 242 RLIQKLRT-------HMHQVIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAIT-------REGDVVCGLKWSPNGRY 306 (507)
Q Consensus 242 ~~~~~~~~-------~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~ 306 (507)
+....... ....|.++..| ...|-.|+.++-|..++..+.. ...+. -....|.++...++|++
T Consensus 293 ~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~l 370 (795)
T 4a2l_A 293 SFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKNL 370 (795)
T ss_dssp EEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTSCE
T ss_pred eEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCCCE
Confidence 65433211 23568888884 4456677777788888876543 11111 12456899999988886
Q ss_pred EEEEeCCcEEEEEcCCCCCCCCeeeec---------CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee
Q psy8285 307 LASGSNNTVKIWDFRQLDAKRPQVNNQ---------CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV 377 (507)
Q Consensus 307 l~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 377 (507)
.+...++-|..||..++ ....+. .....|.++...+++..+.+... ++-|..||..+++.....
T Consensus 371 WiGt~~~Gl~~~~~~~~----~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~---~~Gl~~~d~~~~~~~~~~ 443 (795)
T 4a2l_A 371 WIGTNDGGLNLYNPITQ----RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH---AGGLSILHRNSGQVENFN 443 (795)
T ss_dssp EEEESSSCEEEECTTTC----CEEEECCC------CCSCSCEEEEEEETTTTEEEEEET---TTEEEEEETTTCCEEEEC
T ss_pred EEEECCCCeEEEcCCCC----cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC---cCceeEEeCCCCcEEEee
Confidence 66444578999998764 222221 12356889998887741444332 677999998877644322
Q ss_pred e-----cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec------cccceeEEEECCCCCEEEEEeCCC
Q psy8285 378 K-----TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI------HQERILSAVLSPDQTCVAAASADE 446 (507)
Q Consensus 378 ~-----~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~s~~~dg 446 (507)
. ....|.++...++|...+. +. +-+.+||..+++....... ....|.++...++|+..+... +
T Consensus 444 ~~~~~l~~~~v~~i~~d~~g~lwig---t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~ 517 (795)
T 4a2l_A 444 QRNSQLVNENVYAILPDGEGNLWLG---TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--E 517 (795)
T ss_dssp TTTSCCSCSCEEEEEECSSSCEEEE---ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--S
T ss_pred cCCCCcCCCeeEEEEECCCCCEEEE---ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--C
Confidence 1 1246899999998886665 23 4588999877654322211 235689999999988666444 4
Q ss_pred cEEEEecCCCC
Q psy8285 447 TISIWNCFPRD 457 (507)
Q Consensus 447 ~i~iw~~~~~~ 457 (507)
-|..|+..+.+
T Consensus 518 Gl~~~~~~~~~ 528 (795)
T 4a2l_A 518 GLSVFKQEGLD 528 (795)
T ss_dssp CEEEEEEETTE
T ss_pred ceEEEeCCCCe
Confidence 58888876543
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.78 E-value=4.5e-06 Score=70.85 Aligned_cols=188 Identities=10% Similarity=0.087 Sum_probs=123.4
Q ss_pred eeEEEEeecCcc--EEEEEeeCCEEEEE-ecC--CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--CCc
Q psy8285 242 RLIQKLRTHMHQ--VIAMCWNGNLLSCG-TIG--GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--NNT 314 (507)
Q Consensus 242 ~~~~~~~~~~~~--v~~~~~~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~ 314 (507)
+.+.++ .|... ...+.|++..|..+ +.+ ..|+.+|+.+++. .....-. .........+++..|.... ++.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRI-LQRAEVP-PPYFGAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCE-EEEEeCC-CCcceeEEEEeCCEEEEEEeeCCE
Confidence 344455 35433 56888865555444 443 4899999999873 3333222 2222222233355666556 599
Q ss_pred EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC------CCeEEEEE
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD------SQVTSILW 388 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------~~i~~~~~ 388 (507)
+.+||..+. +.+.++.... .-..++ +++..++++.+ ++.|.++|..+.+.+..+... ..++.+.|
T Consensus 87 v~v~D~~tl---~~~~ti~~~~-~Gwglt--~dg~~L~vSdg---s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~ 157 (243)
T 3mbr_X 87 GFVYDLATL---TPRARFRYPG-EGWALT--SDDSHLYMSDG---TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW 157 (243)
T ss_dssp EEEEETTTT---EEEEEEECSS-CCCEEE--ECSSCEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEECCcC---cEEEEEeCCC-CceEEe--eCCCEEEEECC---CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence 999999987 6777766432 223444 57778888764 889999999999988877643 34566776
Q ss_pred CCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc-------------ccceeEEEECCCCCEEEEEeC
Q psy8285 389 SEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-------------QERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 389 s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~s~~~ 444 (507)
. +|+..+. ...+..|.+.|..+++.+..+... ....+.|+++|+++.|+..+.
T Consensus 158 ~-~G~lyan--vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 158 V-NGELLAN--VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp E-TTEEEEE--ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred e-CCEEEEE--ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6 5554433 445779999999999998877521 124688999998777766664
No 267
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.78 E-value=2.5e-06 Score=84.02 Aligned_cols=255 Identities=13% Similarity=-0.003 Sum_probs=153.1
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecCCCCCC--ceEE-EEEccCCCeEEEEeCC------CCcEEEEeCCCceeEEEE
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA--YISC-VAWKPRTTDLAVTNTC------TEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~--~v~~-~~~~~~~~~l~~~~~~------dg~i~iwd~~~~~~~~~~ 247 (507)
.+++++.++.|+.+|..+|+..-...... +.. .+.+ .... + ..++++ +. ++.|..+|..+++.+..+
T Consensus 117 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~-~-g~v~vg-~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 117 QIVKKQANGHLLALDAKTGKINWEVEVCD-PKVGSTLTQAPFVA-K-DTVLMG-CSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEE-T-TEEEEE-CBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEecCCC-CCccceeccCCEEE-C-CEEEEE-ecCCccCCCCEEEEEECCCCcEEEEE
Confidence 36666789999999999999876665432 110 1111 1111 3 456665 33 799999999999998876
Q ss_pred eecCcc-------------------------------------E-EEEEee--CCEEEEEecC----------------C
Q psy8285 248 RTHMHQ-------------------------------------V-IAMCWN--GNLLSCGTIG----------------G 271 (507)
Q Consensus 248 ~~~~~~-------------------------------------v-~~~~~~--~~~l~~~~~d----------------g 271 (507)
...... + ..++++ ...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 542211 0 123443 3566555532 3
Q ss_pred eEEEEECCCCCcCceeeec-C--------CCceEEEEEcCCCC---EEEEEe-CCcEEEEEcCCCCCCCCeeeecCCC--
Q psy8285 272 NILHYDVRTHSDYPTAITR-E--------GDVVCGLKWSPNGR---YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHL-- 336 (507)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~-~--------~~~v~~~~~~~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-- 336 (507)
.|..+|.++++..-..... | ..++. +....+|+ .++.++ +|.++++|.+++ +.+.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~~w~~~~~~~~ 348 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENG---NLIVAEKVDPAV 348 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTC---CEEEEEESSTTC
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCC---CEEeeecccCCc
Confidence 5899999988732222111 1 12221 22334674 456666 599999999887 4433322110
Q ss_pred -----------CCe--------------------------eEEEEccCCCcEEEEEcc----------------------
Q psy8285 337 -----------SAV--------------------------KAIAWCPWEPTLLATGGG---------------------- 357 (507)
Q Consensus 337 -----------~~v--------------------------~~~~~~~~~~~~~~~~~~---------------------- 357 (507)
.++ ..++++|+...+++....
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 011 246788877655554310
Q ss_pred ------------CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccc
Q psy8285 358 ------------ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE 425 (507)
Q Consensus 358 ------------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~ 425 (507)
..++.|..||+.+++.+..+.....+....+...+..+++ ++.|+.|+.+|.++++.+.++.....
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~--g~~dg~l~a~D~~tG~~lw~~~~~~~ 506 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY--ATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEE--EcCCCeEEEEECCCCCEEEEEeCCCC
Confidence 1258999999999999888766544333333334667777 77899999999999999998874332
Q ss_pred c-eeEEEECCCCCEEEE
Q psy8285 426 R-ILSAVLSPDQTCVAA 441 (507)
Q Consensus 426 ~-i~~~~~s~~~~~l~s 441 (507)
. -.-+.+..+|+.++.
T Consensus 507 ~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 507 GIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cEeeeEEEEECCEEEEE
Confidence 1 122345567765443
No 268
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.75 E-value=8.6e-05 Score=65.01 Aligned_cols=275 Identities=8% Similarity=0.082 Sum_probs=185.0
Q ss_pred eeeCCCCEEEEE----cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 171 LDWGYHDTLAVA----LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 171 ~~~s~~~~~~~~----~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
+.+..|.++++- .+.+|.|.|+.+++........ . -+.-.+|..+.+|.- ....+.++|+++.+.++.
T Consensus 31 lTmESDkyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi~--A----dsAIMnP~~~ViALr--ag~~LQiFnletK~klks 102 (365)
T 2xzh_A 31 LTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS--A----DSAIMNPASKVIALK--AGKTLQIFNIEMKSKMKA 102 (365)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEETTSTTSCEEEECC--C----SEEEECSSSSEEEEE--ETTEEEEEETTTTEEEEE
T ss_pred eeeecCceEEEEecCCCCCEEEEEECCCCCCccccccc--c----ceeeeCCCccEEEEe--cCCeEEEechHHhhhhcc
Confidence 444456655553 2347888899886654444332 1 234458988888776 377899999999988888
Q ss_pred EeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCC----CceEEEEEcCCCCEEEEEe----C----C
Q psy8285 247 LRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREG----DVVCGLKWSPNGRYLASGS----N----N 313 (507)
Q Consensus 247 ~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~----d----~ 313 (507)
..- ...|.--.| +.+.|+..+ +..|+-|++.....+.+.+..|. ..|..-..+++.++++..+ + |
T Consensus 103 ~~~-~e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G 180 (365)
T 2xzh_A 103 HTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 180 (365)
T ss_dssp EEC-SSCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred eec-CCccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccce
Confidence 764 457777777 888888777 56899999987665666666553 4577778889999876533 2 7
Q ss_pred cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEcc--CCCcEEEEEcc-CCCCeEEEEeCCCC---Cee-----eee--ec-
Q psy8285 314 TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP--WEPTLLATGGG-ICDQTVRLWNSMNG---KEK-----CHV--KT- 379 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~-~~d~~i~i~d~~~~---~~~-----~~~--~~- 379 (507)
.+.+|..+. +..+.+++|.+....+.... ....+++.+.. ...+.+++.++... .+. ..+ ..
T Consensus 181 ~mQLYS~er----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppe 256 (365)
T 2xzh_A 181 AMQLYSVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 256 (365)
T ss_dssp EEEEEETTT----TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTT
T ss_pred eEEEEeecc----cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCcc
Confidence 889999886 46677777765544443321 12235554432 11268999998442 111 111 11
Q ss_pred --CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 380 --DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 380 --~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
..-..++..++....++. -+.-|.|++||+.++.++..-+--...|..-+-+....=++.....|.|.--.+....
T Consensus 257 a~~DFPVamqvs~kygviyv--iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 257 AQNDFPVAMQISEKHDVVFL--ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp CTTCCEEEEEEETTTTEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred ccCCceEEEEecccCCEEEE--EeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 134678888888888877 4588999999999999998877666677655555554456667788888888887766
Q ss_pred cccc
Q psy8285 458 KKRK 461 (507)
Q Consensus 458 ~~~~ 461 (507)
.+.-
T Consensus 335 ivpy 338 (365)
T 2xzh_A 335 IIPY 338 (365)
T ss_dssp HHHH
T ss_pred Eehh
Confidence 5543
No 269
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.73 E-value=6.9e-05 Score=74.38 Aligned_cols=231 Identities=9% Similarity=-0.032 Sum_probs=151.7
Q ss_pred CCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEE
Q psy8285 176 HDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVI 255 (507)
Q Consensus 176 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 255 (507)
..+|..+....|+..++.+.+......+. .-..+..++|++.+..|+.+...++.|+.+++........+........
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~--~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLT--GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcC--CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 34666678889999999876654444433 3356889999998888887746788999999876544333432223344
Q ss_pred EEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCCCCe
Q psy8285 256 AMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS---NNTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 256 ~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~ 329 (507)
.+++ . +++.++-...+.|.+.+++... ........-.....+++.|....|+... .+.|...++... ..
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~----~~ 158 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS----ER 158 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----SC
T ss_pred eEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC----ce
Confidence 4555 3 4455555566889999987643 2222223445678999999665665554 267888887654 22
Q ss_pred eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEE
Q psy8285 330 VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKM 408 (507)
Q Consensus 330 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v 408 (507)
..+.........+++++++..++.+..+ .+.|..+|+..... ..+... .....+++.. ..|+.+ -...+.|..
T Consensus 159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~--~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~t-D~~~~~I~~ 232 (628)
T 4a0p_A 159 TTLVPNVGRANGLTIDYAKRRLYWTDLD--TNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWT-DWSRRSIER 232 (628)
T ss_dssp EEEECSCSSEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEE-ETTTTEEEE
T ss_pred EEEECCCCCcceEEEccccCEEEEEECC--CCEEEEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEe-cCCCCEEEE
Confidence 2222345677899999988888888765 88999999876544 333332 4567788765 345543 456788999
Q ss_pred EeCCCccEEEE
Q psy8285 409 WEYPRLHLIEE 419 (507)
Q Consensus 409 ~d~~~~~~~~~ 419 (507)
.|..+++....
T Consensus 233 ~dk~tg~~~~~ 243 (628)
T 4a0p_A 233 ANKTSGQNRTI 243 (628)
T ss_dssp EETTTCCSCEE
T ss_pred EECCCCCceEE
Confidence 99776654333
No 270
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.72 E-value=3.3e-05 Score=78.47 Aligned_cols=232 Identities=7% Similarity=-0.024 Sum_probs=149.0
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc----eeEEEEeecCc
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE----RLIQKLRTHMH 252 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~----~~~~~~~~~~~ 252 (507)
.++..+....|+..++...+...+.. ....+..|+|.+.+..|+.+....+.|+.+++... .....+.....
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~----~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~ 471 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 471 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred cccccccccceeEeeccCCcceeeec----CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC
Confidence 36666677788888887766555443 45668899999977777766466788999988753 22233332333
Q ss_pred cEEEEEe--eC-CEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCC
Q psy8285 253 QVIAMCW--NG-NLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLDAK 326 (507)
Q Consensus 253 ~v~~~~~--~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~ 326 (507)
....|++ .+ +++++-...+.|.+.++.... ..............|++.|.+..|+.+. . +.|...++...
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~--- 547 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--- 547 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---
Confidence 3445555 34 455555667899999998643 2233333445678999999866666655 3 67888888753
Q ss_pred CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCCeEEEEeccCC
Q psy8285 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYRELVTSHGKQD 403 (507)
Q Consensus 327 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~d 403 (507)
...............|++++.+..|+++-.+ ...|..+++........+... .....|++. +.+|+.+ -...
T Consensus 548 ~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~--~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwt-D~~~ 622 (791)
T 3m0c_C 548 DIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-DIIN 622 (791)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-ETTT
T ss_pred ceEEEEeCCCCCceEEEEecCCCeEEEEeCC--CCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEE-ECCC
Confidence 2222233334578899999888788887764 789999998655544444332 345667664 4455554 4567
Q ss_pred CeEEEEeCCCccEEEEee
Q psy8285 404 CSLKMWEYPRLHLIEELK 421 (507)
Q Consensus 404 ~~i~v~d~~~~~~~~~~~ 421 (507)
+.|...|..+++.+..+.
T Consensus 623 ~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TEEEEEETTTCCCCEEEE
T ss_pred CEEEEEeCCCCcceEEee
Confidence 889989877776555543
No 271
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.72 E-value=3.6e-05 Score=66.33 Aligned_cols=202 Identities=12% Similarity=0.115 Sum_probs=134.9
Q ss_pred ecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee-cCccEEEEEe--eCCEEEEEecCCeEEEEEC
Q psy8285 202 EYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDV 278 (507)
Q Consensus 202 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~ 278 (507)
.+++ -...+..++|+|++..|++....++.|...|.. ++.++.+.- .....-.+++ ++.++++.-.++.+.++++
T Consensus 21 ~l~g-~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAG-ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTT-CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCC-cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 4556 566899999999887777654778899999988 787777642 2345677788 4555555556778999988
Q ss_pred CCCCcC--ceee------ecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeee-------cCCCCCeeEE
Q psy8285 279 RTHSDY--PTAI------TREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNN-------QCHLSAVKAI 342 (507)
Q Consensus 279 ~~~~~~--~~~~------~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~-------~~~~~~v~~~ 342 (507)
...... .... .........++|+|+++.|.++.+ ....+|.++.......+... ..+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 765421 1111 123445789999999987777774 44455555421000112211 1133467899
Q ss_pred EEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC----------CCeEEEEECCCCCeEEEEeccCCCeEEEEeC
Q psy8285 343 AWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----------SQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 343 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~ 411 (507)
+++|...++++.+.. ++.+..+|.. ++.+..+.-. .....++|.++|+..++ ++.+.+++|.-
T Consensus 179 ~~dp~tg~lliLS~~--s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv---sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHE--SRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV---SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETT--TTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE---ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECC--CCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE---cCCceEEEEEe
Confidence 999998888888775 8899999965 5565554432 26789999999985554 56777777764
No 272
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.71 E-value=2.7e-05 Score=70.84 Aligned_cols=234 Identities=10% Similarity=0.055 Sum_probs=135.3
Q ss_pred eeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCC----------------CCCceEEEEEccCCCeEEEEeCCCC
Q psy8285 170 GLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTY----------------DNAYISCVAWKPRTTDLAVTNTCTE 231 (507)
Q Consensus 170 ~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~l~~~~~~dg 231 (507)
.++|.+++ +++...++.|..|+..+++.......... ....+..+++.+++..|+++ ...+
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~-d~~~ 101 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV-DCYY 101 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-ETTT
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-ECCC
Confidence 58888876 55555788999999877655433211000 01357899999833355555 4455
Q ss_pred cEEEEeCCCceeEEEEee----cCccEEEEEee---CCEEEEEec-----------------CCeEEEEECCCCCcCcee
Q psy8285 232 YIDLWHEQEERLIQKLRT----HMHQVIAMCWN---GNLLSCGTI-----------------GGNILHYDVRTHSDYPTA 287 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~---~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~ 287 (507)
.+..+|..+++....... .......+.++ +++.++-.. ++.|..+|..+++ ...
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~~ 179 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE--TTL 179 (322)
T ss_dssp EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE--EEE
T ss_pred CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE--EEE
Confidence 588898776543221111 11235667773 444444322 3668888876554 111
Q ss_pred eecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEcc--------
Q psy8285 288 ITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG-------- 357 (507)
Q Consensus 288 ~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------- 357 (507)
+.........++++|+++.|+.+. .+.|..|++..... .....+....+ ...+++.++|. ++++...
T Consensus 180 ~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 180 LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHG 256 (322)
T ss_dssp EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTS
T ss_pred eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-CccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccC
Confidence 211123345789999999777665 38999999875311 11222211223 78899999985 5554431
Q ss_pred CCCCeEEEEeCCCCCeeeeeecC-----CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 358 ICDQTVRLWNSMNGKEKCHVKTD-----SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 358 ~~d~~i~i~d~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
...+.|..+|. .++.+..+... ..++.+++ .+++.+++ ...++.|.++++..
T Consensus 257 ~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~--~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 257 RVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIG--TLFHGSVGILVYDK 313 (322)
T ss_dssp CEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEE--CSSCSEEEEEEC--
T ss_pred CCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEe--ecCCCceEEEeccc
Confidence 01356888886 47766666543 24566666 34544444 55678899988753
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.70 E-value=2.7e-05 Score=70.26 Aligned_cols=220 Identities=9% Similarity=-0.007 Sum_probs=132.4
Q ss_pred ceeeeeeCCCC-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC-cEEEEeCCCcee
Q psy8285 167 YTSGLDWGYHD-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE-YIDLWHEQEERL 243 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg-~i~iwd~~~~~~ 243 (507)
....++|++++ ++.+. .++.|..|+... +....... ......+++.++++.+++....++ .|..+|..+++.
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~----~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV----EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC----SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC----CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 45679999987 55554 678999999865 44444443 346889999999985554412222 477778777765
Q ss_pred EEEEee-cCccEEEEE-eeCCEEEEEe-cCCeEEEEECCCCCcCce---------eeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 244 IQKLRT-HMHQVIAMC-WNGNLLSCGT-IGGNILHYDVRTHSDYPT---------AITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 244 ~~~~~~-~~~~v~~~~-~~~~~l~~~~-~dg~i~i~d~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
...... .......++ +.+..++... .++.|+++|......... .....-.....+ +++++.|+.+.
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 433321 112223333 3444444444 588999999765320010 000111234555 78888877776
Q ss_pred --CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee--eeecC-CCeEEE
Q psy8285 312 --NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC--HVKTD-SQVTSI 386 (507)
Q Consensus 312 --d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~-~~i~~~ 386 (507)
.+.|..+++...........+. .......++++++| +++++..+ .+.|.++|.. ++... .+... ...+++
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG-~l~va~~~--~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEG-NLYGATHI--YNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTC-CEEEECBT--TCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCC-CEEEEeCC--CCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 3899999987521111112221 11345779999998 45555543 7889999975 65532 33333 568999
Q ss_pred EEC---CCCCeEEEE
Q psy8285 387 LWS---EQYRELVTS 398 (507)
Q Consensus 387 ~~s---~~~~~l~~~ 398 (507)
+|. |+++.|+++
T Consensus 261 a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVV 275 (306)
T ss_dssp EECCSTTTTTEEEEE
T ss_pred EEecccCCCCEEEEE
Confidence 998 898888774
No 274
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.68 E-value=1.3e-05 Score=78.86 Aligned_cols=253 Identities=15% Similarity=0.074 Sum_probs=149.3
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCC--CceEE-EEEccCCCeEEEEeC-----CCCcEEEEeCCCceeEEEEee
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDN--AYISC-VAWKPRTTDLAVTNT-----CTEYIDLWHEQEERLIQKLRT 249 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~--~~v~~-~~~~~~~~~l~~~~~-----~dg~i~iwd~~~~~~~~~~~~ 249 (507)
+++++.++.|+.+|..+|+..-...... +. ..+.+ .... ++ .++++++ .+|.|+-+|..+++.+..+..
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~-~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSD-IKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCC-CCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 6667789999999999999876655432 10 01111 1111 33 5555512 379999999999999877664
Q ss_pred cCcc-------------------------------------EE-EEEe--eCCEEEEEecC----------------CeE
Q psy8285 250 HMHQ-------------------------------------VI-AMCW--NGNLLSCGTIG----------------GNI 273 (507)
Q Consensus 250 ~~~~-------------------------------------v~-~~~~--~~~~l~~~~~d----------------g~i 273 (507)
.... ++ .+++ ....++.+..+ +.|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 2211 00 2233 45566766654 379
Q ss_pred EEEECCCCCcCceeeec-CC--------CceEEEEEc-CCC---CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCC----
Q psy8285 274 LHYDVRTHSDYPTAITR-EG--------DVVCGLKWS-PNG---RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCH---- 335 (507)
Q Consensus 274 ~i~d~~~~~~~~~~~~~-~~--------~~v~~~~~~-~~~---~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~---- 335 (507)
..+|.++++..-..... |. .++. +... .+| +.++.++ +|.++++|.+++ +.+......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~lw~~~~~~~~~ 356 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDG---ALVSANKLDDTVN 356 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTC---CEEEEEESSTTCC
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCC---CEeecccccCCcc
Confidence 99999988732222111 11 1222 2222 467 4566666 599999999887 443322210
Q ss_pred ---------CCCe--------------------------eEEEEccCCCcEEEEEc------------------------
Q psy8285 336 ---------LSAV--------------------------KAIAWCPWEPTLLATGG------------------------ 356 (507)
Q Consensus 336 ---------~~~v--------------------------~~~~~~~~~~~~~~~~~------------------------ 356 (507)
..++ ..++++|+...+++...
T Consensus 357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 436 (599)
T 1w6s_A 357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL 436 (599)
T ss_dssp SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence 0011 24566776544433210
Q ss_pred ------cC------CCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccc
Q psy8285 357 ------GI------CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ 424 (507)
Q Consensus 357 ------~~------~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~ 424 (507)
.. ..+.|..||+.+++.+.......+...-.....+..+++ ++.|+.++.||.++++.+.+++...
T Consensus 437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~--gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY--GTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEE--ECCCCeEEEEECCCCCEEEEeeCCC
Confidence 00 257899999999998887764432221112235677777 7889999999999999999886543
Q ss_pred cce-eEEEECCCCCEE
Q psy8285 425 ERI-LSAVLSPDQTCV 439 (507)
Q Consensus 425 ~~i-~~~~~s~~~~~l 439 (507)
..+ .-+.|..+|++.
T Consensus 515 g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 515 GAIGYPMTYTHKGTQY 530 (599)
T ss_dssp CCCSCCEEEEETTEEE
T ss_pred CcEeccEEEEeCCEEE
Confidence 222 224555677643
No 275
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=7.5e-05 Score=77.02 Aligned_cols=272 Identities=10% Similarity=0.001 Sum_probs=167.4
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecC----CCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYP----TYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
.|.++...+++ +..++.+ .|.+||..+++........ ......|.++...++|...+ + +..+-|.++|..+.
T Consensus 212 ~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-g-t~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-A-TELNGIMILDLQQN 288 (781)
T ss_dssp SEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-E-ESSSCEEEEETTCC
T ss_pred ceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-E-eCCCCeEEECCCCC
Confidence 46677777776 6666655 7999998877654332211 00346799999988876554 4 45466888998776
Q ss_pred eeEEEEe--------------ecCccEEEEEee-CCEEEEEecCCeEEEEECCCCCcCceeee----------cCCCceE
Q psy8285 242 RLIQKLR--------------THMHQVIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAIT----------REGDVVC 296 (507)
Q Consensus 242 ~~~~~~~--------------~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~~v~ 296 (507)
+...... -....|.++..| ...|-.|+.++-|..++..... ...+. .....|.
T Consensus 289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPT--FHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp ---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCS--CEEEC----CCCSSCCSSSCEE
T ss_pred eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCc--ceeeccCccccccCCCCCcceE
Confidence 5332211 134568888884 3456677777778888877543 11111 1235689
Q ss_pred EEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeee----cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC
Q psy8285 297 GLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNN----QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 372 (507)
Q Consensus 297 ~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 372 (507)
++...+++++.+...++-+..||..+. ....+ ......|.++...+++ .+.+... ++-+..+|..+++
T Consensus 367 ~i~~d~~g~lWigt~~~Gl~~~~~~~~----~~~~~~~~~~~~~~~v~~i~~d~~g-~lWigt~---~~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 367 SVCDDGQGKLWIGTDGGGINVFENGKR----VAIYNKENRELLSNSVLCSLKDSEG-NLWFGTY---LGNISYYNTRLKK 438 (781)
T ss_dssp EEEECTTSCEEEEEBSSCEEEEETTEE----EEECC-----CCCSBEEEEEECTTS-CEEEEET---TEEEEEECSSSCE
T ss_pred EEEEcCCCCEEEEeCCCcEEEEECCCC----eEEEccCCCCCCCcceEEEEECCCC-CEEEEec---cCCEEEEcCCCCc
Confidence 999888887665544577888987653 11111 1234678899888777 4555332 5678899987765
Q ss_pred eeeeee---cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc-----ccceeEEEECCCCCEEEEEeC
Q psy8285 373 EKCHVK---TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-----QERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 373 ~~~~~~---~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~s~~~ 444 (507)
...... ....|.++...+++...+. +. +-|..||..+++........ ...|.++...++|++.+ |+.
T Consensus 439 ~~~~~~~~~~~~~v~~i~~d~~g~lwig---t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~ 513 (781)
T 3v9f_A 439 FQIIELEKNELLDVRVFYEDKNKKIWIG---TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTF 513 (781)
T ss_dssp EEECCSTTTCCCCEEEEEECTTSEEEEE---ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EES
T ss_pred EEEeccCCCCCCeEEEEEECCCCCEEEE---EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEc
Confidence 433221 2357899999888876655 33 56889998765543322111 35689999999888665 444
Q ss_pred CCcEEEEecCCC
Q psy8285 445 DETISIWNCFPR 456 (507)
Q Consensus 445 dg~i~iw~~~~~ 456 (507)
++-+..|+..+.
T Consensus 514 ~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 514 GGGVGIYTPDMQ 525 (781)
T ss_dssp SSCEEEECTTCC
T ss_pred CCCEEEEeCCCC
Confidence 334777876544
No 276
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.64 E-value=0.00026 Score=64.59 Aligned_cols=275 Identities=8% Similarity=0.079 Sum_probs=188.2
Q ss_pred eeeCCCCEEEEE----cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 171 LDWGYHDTLAVA----LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 171 ~~~s~~~~~~~~----~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
+.+..|.++++- .+.+|.|.|+.+++........ .-+.-.+|..+.+|.- ...++.|+|+++...++.
T Consensus 30 ~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~------AdsAIMnP~~~iiALr--ag~~lQiFnle~K~klks 101 (494)
T 1bpo_A 30 LTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS------ADSAIMNPASKVIALK--AGKTLQIFNIEMKSKMKA 101 (494)
T ss_dssp EEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECC------CSEEEECSSSSCEEEE--ETTEEEEEETTTTEEEEE
T ss_pred eeeecCceEEEEecCCCCCeEEEEECCCCCcceecccc------cceeeeCCCCcEEEEe--cCCeEEEEchHHhhhhcc
Confidence 444445555553 3447888888886654443332 2345568888888876 378999999999888887
Q ss_pred EeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCC----CceEEEEEcCCCCEEEEEe--------CC
Q psy8285 247 LRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREG----DVVCGLKWSPNGRYLASGS--------NN 313 (507)
Q Consensus 247 ~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~--------d~ 313 (507)
..- ...|.--.| +.+.|+..+ +..|+-|++.....+.+.+..|. ..|..-..+++.++++..+ .|
T Consensus 102 ~~~-~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G 179 (494)
T 1bpo_A 102 HTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 179 (494)
T ss_dssp EEC-SSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEE
T ss_pred eec-CCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccc
Confidence 764 345666677 888888877 56899999987655666666553 4577778899999876432 27
Q ss_pred cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC--CCcEEEEEcc-CCCCeEEEEeCCCC---Ce-----eeee--ec-
Q psy8285 314 TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW--EPTLLATGGG-ICDQTVRLWNSMNG---KE-----KCHV--KT- 379 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~-~~d~~i~i~d~~~~---~~-----~~~~--~~- 379 (507)
.+.+|..+. +..+.+++|.+....+....+ ...+++.+.. ...+.++|.++... .+ ...+ ..
T Consensus 180 ~mQLYS~er----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe 255 (494)
T 1bpo_A 180 AMQLYSVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 255 (494)
T ss_dssp EEEEEESTT----CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred eEEEeeccc----cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc
Confidence 889999886 477778888766655544321 1235554442 11378999998543 11 1111 11
Q ss_pred --CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 380 --DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 380 --~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
..-..++..++....++. -+.-|.|++||+.++.++..-+--...|..-+-+....=++.....|.|.--.+....
T Consensus 256 ~~~DFPvamqvs~kygviyv--iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 256 AQNDFPVAMQISEKHDVVFL--ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp STTCCEEEEEEETTTTEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cccCceeEEEecccCCEEEE--EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 134678889988888887 5688999999999999998877666677666655555556667788988888887766
Q ss_pred cccc
Q psy8285 458 KKRK 461 (507)
Q Consensus 458 ~~~~ 461 (507)
.+.-
T Consensus 334 ivpy 337 (494)
T 1bpo_A 334 IIPY 337 (494)
T ss_dssp HHHH
T ss_pred chhh
Confidence 5543
No 277
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.64 E-value=4.5e-06 Score=84.12 Aligned_cols=252 Identities=9% Similarity=0.041 Sum_probs=140.9
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE--eecCccEEEEEe-eCC
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL--RTHMHQVIAMCW-NGN 262 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~-~~~ 262 (507)
.+.+||+.+++...+..++..+.....++++.++++.++++|..+..+.+||..+.+-...- ............ +++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~ 299 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 299 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe
Confidence 68999999888665544432133344567888899988888556678999999876543321 112222344555 889
Q ss_pred EEEEEe-cC-----CeEEEEECCCCCcCceeeec-----CCCceEEEEEcCCCCEEEEEe----------CCcEEEEEcC
Q psy8285 263 LLSCGT-IG-----GNILHYDVRTHSDYPTAITR-----EGDVVCGLKWSPNGRYLASGS----------NNTVKIWDFR 321 (507)
Q Consensus 263 ~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~----------d~~i~i~d~~ 321 (507)
+++.|+ .+ ..+.+||..+.. ...+.. ....-....+..+++.++.++ ...+..||..
T Consensus 300 iyv~GG~~~~~~~~~~~e~yd~~t~~--W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 300 VFTIGGSWSGGVFEKNGEVYSPSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred EEEEeCcccCCcccccceEeCCCCCc--ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 999988 34 468999998754 111100 000000011223444444443 2457888887
Q ss_pred CCCCCCCeeeecCCC---------CCeeEEEEccCCCcEEEEEccCC-C-----C---eEEEEeCCCCCeeeee----ec
Q psy8285 322 QLDAKRPQVNNQCHL---------SAVKAIAWCPWEPTLLATGGGIC-D-----Q---TVRLWNSMNGKEKCHV----KT 379 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~-d-----~---~i~i~d~~~~~~~~~~----~~ 379 (507)
.. ........+. ..-.++.|...+..+++.|+... + . .+.+||..+.+-.... ..
T Consensus 378 ~~---~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~ 454 (656)
T 1k3i_A 378 GS---GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF 454 (656)
T ss_dssp TT---CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS
T ss_pred Cc---ceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC
Confidence 65 2111111111 12234455444557887776310 1 1 6888888776543332 11
Q ss_pred CCCeEEEEECCCCCeEEEEeccCC-----------CeEEEEeCCCccEE--EEeeccccceeEEEECCCCCEEEEEeC
Q psy8285 380 DSQVTSILWSEQYRELVTSHGKQD-----------CSLKMWEYPRLHLI--EELKIHQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~g~~d-----------~~i~v~d~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
...-.++...|+++.+++ |+.+ ..+.+||..+.+-. ..+......-....+.|+++.++.|+.
T Consensus 455 ~R~~~~~~~l~~g~i~v~--GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 455 ARTFHTSVVLPDGSTFIT--GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCBSCEEEECTTSCEEEE--CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccCCeEECCCCCEEEE--CCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 122345567789998888 5433 46899998765422 212211222233456789999999885
No 278
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.64 E-value=2.9e-05 Score=76.48 Aligned_cols=257 Identities=11% Similarity=0.023 Sum_probs=151.5
Q ss_pred CCEEEEEcCCeEEEEECCCCceeEEEecCCCCCC--ceE-EEEEcc---CCC-eEEEEeC------CCCcEEEEeCCCce
Q psy8285 176 HDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA--YIS-CVAWKP---RTT-DLAVTNT------CTEYIDLWHEQEER 242 (507)
Q Consensus 176 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~--~v~-~~~~~~---~~~-~l~~~~~------~dg~i~iwd~~~~~ 242 (507)
+.+++++.++.|..+|.++|+..-...... +.. .+. ...... +++ .++++ + .+|.|.-+|..+++
T Consensus 118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~-~~~~~~~~~sP~v~~~~~~G~~~v~vg-~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 118 DKVFFGTLDASVVALNKNTGKVVWKKKFAD-HGAGYTMTGAPTIVKDGKTGKVLLIHG-SSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECSC-GGGTCBCCSCCEEEECTTTCCEEEEEC-CBCGGGCCBCEEEEECTTTCC
T ss_pred CEEEEEeCCCEEEEEECCCCCEEeeecCCC-CCcCcccccCCEEeCCCcCCcEEEEEe-ccccccCCCCEEEEEECCCCC
Confidence 347777889999999999999876665432 110 111 111111 233 45554 3 37899999999999
Q ss_pred eEEEEeecCccE-----------------------------------------EEEEe--eCCEEEEEec----------
Q psy8285 243 LIQKLRTHMHQV-----------------------------------------IAMCW--NGNLLSCGTI---------- 269 (507)
Q Consensus 243 ~~~~~~~~~~~v-----------------------------------------~~~~~--~~~~l~~~~~---------- 269 (507)
.+.........+ ..+++ ...+++.+..
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 887654311100 01233 2456665552
Q ss_pred ----------C----CeEEEEECCCCCcCceeee-cCC--------CceEEEEEc-CCCC---EEEEEe-CCcEEEEEcC
Q psy8285 270 ----------G----GNILHYDVRTHSDYPTAIT-REG--------DVVCGLKWS-PNGR---YLASGS-NNTVKIWDFR 321 (507)
Q Consensus 270 ----------d----g~i~i~d~~~~~~~~~~~~-~~~--------~~v~~~~~~-~~~~---~l~~~~-d~~i~i~d~~ 321 (507)
| +.|..+|.++++..-.... .|. .++. +... .+|+ .++.++ +|.++++|.+
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 5799999998874322211 121 1221 2222 4674 566676 5999999998
Q ss_pred CCCCCCCeeeecCCC-------------CC--------------------------------eeEEEEccCCCcEEEEEc
Q psy8285 322 QLDAKRPQVNNQCHL-------------SA--------------------------------VKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~-------------~~--------------------------------v~~~~~~~~~~~~~~~~~ 356 (507)
++ +.+....... .+ -..++++|+...+++...
T Consensus 355 tG---~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~ 431 (582)
T 1flg_A 355 NG---KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPAN 431 (582)
T ss_dssp TC---CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEE
T ss_pred CC---CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEech
Confidence 87 3333222110 00 013566776555544321
Q ss_pred ------------------------------cCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeE
Q psy8285 357 ------------------------------GICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSL 406 (507)
Q Consensus 357 ------------------------------~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i 406 (507)
...++.|..||+.+++.+...........-.....+..+++ ++.|+.+
T Consensus 432 ~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--g~~dg~l 509 (582)
T 1flg_A 432 HWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT--GTGDGYF 509 (582)
T ss_dssp CEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE--ECTTSEE
T ss_pred hcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEE--ECCCCcE
Confidence 01268899999999998877765533222122224667777 7889999
Q ss_pred EEEeCCCccEEEEeeccccce-eEEEECCCCCEEE
Q psy8285 407 KMWEYPRLHLIEELKIHQERI-LSAVLSPDQTCVA 440 (507)
Q Consensus 407 ~v~d~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~ 440 (507)
+.||.++++.+.+++...... .-+.|..+|++.+
T Consensus 510 ~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 510 KAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 999999999999887643322 1256667876443
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.63 E-value=0.0002 Score=67.12 Aligned_cols=234 Identities=13% Similarity=-0.007 Sum_probs=147.6
Q ss_pred CeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEee--CCEEEEE-ecCCeEEEEECCCCC---cCceeeecCCCc
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG-TIGGNILHYDVRTHS---DYPTAITREGDV 294 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~dg~i~i~d~~~~~---~~~~~~~~~~~~ 294 (507)
.+|+.+ ....|+..++........+ .....+..++|+ +..|+.. ...+.|+.+++.... ............
T Consensus 84 ~~ll~~--~~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 84 AYLFFT--NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp CEEEEE--ETTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred ceeEEe--ccceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 355554 4578888888766544443 345567888984 4445444 456789999887522 122233334456
Q ss_pred eEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC
Q psy8285 295 VCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 372 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 372 (507)
...+++.+.++.|+.+. . +.|.+.++... .....+.........+++.|.+..++.+..+ ..+.|...++....
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~---~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD 236 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTC---SEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCS
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCC---ceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCc
Confidence 78899998666666555 4 89999998754 2222333344567899999987788877643 13789999986544
Q ss_pred eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec--cccceeEEEECCCCCEEEEEeCCCcEE
Q psy8285 373 EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI--HQERILSAVLSPDQTCVAAASADETIS 449 (507)
Q Consensus 373 ~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~i~ 449 (507)
....+... .....+++++++..|+.+ -...+.|..+|+........+.. ......++++. .+..+++-...+.|.
T Consensus 237 ~~~~~~~~l~~P~glavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~ 314 (400)
T 3p5b_L 237 IYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 314 (400)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEE
T ss_pred cEEEEECCCCceEEEEEEeCCCEEEEE-ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEE
Confidence 43333333 578999999988888775 45678999999865433222222 12334566662 334555666678899
Q ss_pred EEecCCCCccccee
Q psy8285 450 IWNCFPRDKKRKAR 463 (507)
Q Consensus 450 iw~~~~~~~~~~~~ 463 (507)
.++..+++....+.
T Consensus 315 ~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 315 SANRLTGSDVNLLA 328 (400)
T ss_dssp EEESSSCCCCEEEE
T ss_pred EEEcCCCCceEEEe
Confidence 99977776655443
No 280
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=0.00028 Score=72.74 Aligned_cols=276 Identities=6% Similarity=-0.074 Sum_probs=169.8
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCC----CCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPT----YDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
.|.++...+++ +.+++.++.|..|+..+++......... .....|.++...+++...+.+ .+ -+.+||..++
T Consensus 164 ~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt--~~-Gl~~~d~~~~ 240 (781)
T 3v9f_A 164 QTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGT--SK-GLALFNANTE 240 (781)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEE--TT-EEEEEETTTT
T ss_pred ceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEe--CC-cHheECCCCC
Confidence 35666666666 6666666689999988776543321100 023569999998888766654 44 6889998776
Q ss_pred eeEEEEe-------ecCccEEEEEee-CCEEEEEecCCeEEEEECCCCCcCceee-------------ecCCCceEEEEE
Q psy8285 242 RLIQKLR-------THMHQVIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAI-------------TREGDVVCGLKW 300 (507)
Q Consensus 242 ~~~~~~~-------~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~~~~~v~~~~~ 300 (507)
+...... .....|.++..+ ...|..|+..+-|.++|..+........ ......|.++..
T Consensus 241 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~ 320 (781)
T 3v9f_A 241 TFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ 320 (781)
T ss_dssp EEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEE
T ss_pred cEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE
Confidence 5432211 124568888883 5567777775678889987654111110 112456899999
Q ss_pred cCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeec----------CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC
Q psy8285 301 SPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQ----------CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 301 ~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
.++|.+-+...++-|..++.... ....+. .....|.++...+++. +.+... ++-|..||..+
T Consensus 321 D~~g~lWigt~~~Gl~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~---~~Gl~~~~~~~ 392 (781)
T 3v9f_A 321 DSFNNIWIGTWGGGINFISNAPP----TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTD---GGGINVFENGK 392 (781)
T ss_dssp CSSCCEEEEEBSSCEEEECSSCC----SCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEB---SSCEEEEETTE
T ss_pred eCCCCEEEEecCCeEEEeCCCCC----cceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeC---CCcEEEEECCC
Confidence 99887655544678888887654 222221 1235689999888774 444332 56688898765
Q ss_pred CCeeeeee----cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee--ccccceeEEEECCCCCEEEEEeC
Q psy8285 371 GKEKCHVK----TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK--IHQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 371 ~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
++...... ....|.++...+++...+. +.++-|..+|..+++...... .....|.++...+++.+.+ |+.
T Consensus 393 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lWig---t~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~ 468 (781)
T 3v9f_A 393 RVAIYNKENRELLSNSVLCSLKDSEGNLWFG---TYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH 468 (781)
T ss_dssp EEEECC-----CCCSBEEEEEECTTSCEEEE---ETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET
T ss_pred CeEEEccCCCCCCCcceEEEEECCCCCEEEE---eccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC
Confidence 43322111 1256889998888876654 455678999987665432211 1345789999888887555 454
Q ss_pred CCcEEEEecCCCCc
Q psy8285 445 DETISIWNCFPRDK 458 (507)
Q Consensus 445 dg~i~iw~~~~~~~ 458 (507)
+-|..|+..+.+.
T Consensus 469 -~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 469 -AGVFVIDLASKKV 481 (781)
T ss_dssp -TEEEEEESSSSSC
T ss_pred -CceEEEeCCCCeE
Confidence 4588888776543
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=9.9e-05 Score=69.86 Aligned_cols=233 Identities=12% Similarity=0.144 Sum_probs=133.8
Q ss_pred eeeeeCCC--C-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC----cEEEEeCCCc
Q psy8285 169 SGLDWGYH--D-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE----YIDLWHEQEE 241 (507)
Q Consensus 169 ~~~~~s~~--~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg----~i~iwd~~~~ 241 (507)
..|+++|+ + ++++...+.|+.+|+.++....+.. .......++|+++++.|+++...++ .+..++. .+
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~----~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS----GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC----CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec----CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 45888872 4 5555544889999998777655443 3456889999999997777723222 2333443 23
Q ss_pred eeE--EEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C-Cc
Q psy8285 242 RLI--QKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N-NT 314 (507)
Q Consensus 242 ~~~--~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~ 314 (507)
... ..+.. ......+++ ++.++++-..++.|..++....................++|+|++++|+.+. . +.
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 221 22222 222344555 3556666667789999998865421111111223467899999999766665 4 89
Q ss_pred EEEEEcCCCC-CCCCeeeecCC---------------CCCee-EEEEc--------cCCCcEEEEEccCCCCeEEEEeCC
Q psy8285 315 VKIWDFRQLD-AKRPQVNNQCH---------------LSAVK-AIAWC--------PWEPTLLATGGGICDQTVRLWNSM 369 (507)
Q Consensus 315 i~i~d~~~~~-~~~~~~~~~~~---------------~~~v~-~~~~~--------~~~~~~~~~~~~~~d~~i~i~d~~ 369 (507)
|..++..... .......+.+. -.... .+... +++ .++++..+ .+.|+.++ .
T Consensus 294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~--n~~I~~i~-~ 369 (430)
T 3tc9_A 294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRE--NHCIRILT-P 369 (430)
T ss_dssp EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGG--GTEEEEEC-T
T ss_pred EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECC--CcEEEEEC-C
Confidence 9998876320 00011111110 11223 45543 223 56666554 78899998 4
Q ss_pred CCCeeeeeec---------C---------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 370 NGKEKCHVKT---------D---------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 370 ~~~~~~~~~~---------~---------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
+++....... . .....++++|++..|+++ -..++.|+.++.+
T Consensus 370 ~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa-D~~n~rIr~i~~e 429 (430)
T 3tc9_A 370 QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG-DRENRRIRKIGYE 429 (430)
T ss_dssp TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEE-EGGGTEEEEEEEC
T ss_pred CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEE-ECCCCeEEEEccC
Confidence 5544333221 1 247899999964444443 4566788877653
No 282
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.50 E-value=5e-07 Score=91.09 Aligned_cols=243 Identities=8% Similarity=-0.015 Sum_probs=144.7
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC----ceeEEEEeecCcc
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE----ERLIQKLRTHMHQ 253 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~ 253 (507)
++..+..+.|+..++.+.+...+.. ....+..++|.+.+..|+.+....+.|+.+++.. ......+......
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~----~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~ 454 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 454 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSC----CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--
T ss_pred eEEecCccceEEEeCCCCcceeeec----cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCC
Confidence 4444556788888887766543332 3345678999998888887745567899999875 2222222111112
Q ss_pred EEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCCC
Q psy8285 254 VIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLDAKR 327 (507)
Q Consensus 254 v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~~ 327 (507)
...+++ .++++++-...+.|.++++.... ....+.........+++.|.+.+|+.+. . +.|..+++... .
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~---~ 530 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---D 530 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC---C
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC---C
Confidence 334454 34455554566889999987643 2222222234457789999766555544 3 67888877643 1
Q ss_pred CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCCeEEEEeccCCC
Q psy8285 328 PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
..............|+|+|++..|+++... .+.|..+++........+... .....+++.. ..|+.+ ....+
T Consensus 531 ~~~l~~~~l~~PnGlavd~~~~~LY~aD~~--~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywt-d~~~~ 605 (699)
T 1n7d_A 531 IYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWT-DIINE 605 (699)
T ss_dssp CCEESCSSCSSCCCEEECTTTCCEEEEETT--TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEE-CSTTT
T ss_pred eeEEEeCCCCCccEEEEeccCCEEEEEecC--CCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEE-eCCCC
Confidence 111111223456789999998888888765 789999998654333222211 2344555544 355553 45678
Q ss_pred eEEEEeCCCccEEEEeeccccceeEEEEC
Q psy8285 405 SLKMWEYPRLHLIEELKIHQERILSAVLS 433 (507)
Q Consensus 405 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~s 433 (507)
.|..++..+++.+..+.........|++.
T Consensus 606 ~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 606 AIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp CEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred eEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 99999988888887775433334455443
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=6.7e-05 Score=71.05 Aligned_cols=234 Identities=11% Similarity=0.085 Sum_probs=136.4
Q ss_pred CceEEEEEcc-CCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEec-CC----eEEEEECCC
Q psy8285 209 AYISCVAWKP-RTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTI-GG----NILHYDVRT 280 (507)
Q Consensus 209 ~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-dg----~i~i~d~~~ 280 (507)
.....++++| ++..|+++ ...+.|+.+|+..+...... ........+++ +++.|+.+.. ++ .+..++...
T Consensus 137 ~~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp SCCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 3467899998 46667776 44488999998876654433 34556778888 5775655554 22 344444332
Q ss_pred CCcCceeeecCCCceEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeec-CCCCCeeEEEEccCCCcEEEEEcc
Q psy8285 281 HSDYPTAITREGDVVCGLKWSP-NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQ-CHLSAVKAIAWCPWEPTLLATGGG 357 (507)
Q Consensus 281 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~ 357 (507)
.......+.. ......++++| ++.++++-. ++.|..++.... ....... ........++|+|++++++++...
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~---~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ---ETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT---EEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---cEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 2111122222 23456788999 565555444 489999998754 2111111 122356789999999867777654
Q ss_pred CCCCeEEEEeCCC--CCe--eeeeecC----------------CCeE-EEEEC--------CCCCeEEEEeccCCCeEEE
Q psy8285 358 ICDQTVRLWNSMN--GKE--KCHVKTD----------------SQVT-SILWS--------EQYRELVTSHGKQDCSLKM 408 (507)
Q Consensus 358 ~~d~~i~i~d~~~--~~~--~~~~~~~----------------~~i~-~~~~s--------~~~~~l~~~~g~~d~~i~v 408 (507)
.+.|..++... ++. ...+... .... .++.. ++|..+++ -..++.|+.
T Consensus 291 --~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva--D~~n~~I~~ 366 (430)
T 3tc9_A 291 --QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC--DRENHCIRI 366 (430)
T ss_dssp --TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE--EGGGTEEEE
T ss_pred --CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE--ECCCcEEEE
Confidence 88999987653 221 1112110 1233 45553 34555555 456778999
Q ss_pred EeCCCccEEEEeecc---------c---------cceeEEEECCC-CCEEEEEeCCCcEEEEecC
Q psy8285 409 WEYPRLHLIEELKIH---------Q---------ERILSAVLSPD-QTCVAAASADETISIWNCF 454 (507)
Q Consensus 409 ~d~~~~~~~~~~~~~---------~---------~~i~~~~~s~~-~~~l~s~~~dg~i~iw~~~ 454 (507)
++ .+++... +.+. . ..-..++++|+ +.++++-.....|+.++++
T Consensus 367 i~-~~G~v~~-~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTT-FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEE-EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEE-EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 4554332 2221 1 13678999985 5555555556778877754
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.48 E-value=2.9e-05 Score=79.37 Aligned_cols=239 Identities=10% Similarity=-0.026 Sum_probs=130.7
Q ss_pred ceeeeeeC-CCC-EEEEE--cCC----eEEEEECCCC-ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC-----Cc
Q psy8285 167 YTSGLDWG-YHD-TLAVA--LDT----SVYTWNTKTN-KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT-----EY 232 (507)
Q Consensus 167 ~i~~~~~s-~~~-~~~~~--~~~----~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~ 232 (507)
.+....|| ||+ .++.+ .+| .|+++|+.++ +.... .+. .....++|+||++.|+.. ..+ ..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~----~~~~~~~WspDg~~l~y~-~~d~~~~~~~ 248 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS----GTNGEIVWGPDHTSLFYV-TKDETLRENK 248 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE----EECSCCEECSSTTEEEEE-EECTTCCEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc----CceeeEEEecCCCEEEEE-EECCCCCCCE
Confidence 57789999 998 55543 222 4999999988 63210 111 113468899999988887 444 26
Q ss_pred EEEEeCCCcee--EEEEee-cCccEEEEEe--eCCEEEEEec---CCeEEEEECCCCCcCc--eee-ecCCCceEEEEEc
Q psy8285 233 IDLWHEQEERL--IQKLRT-HMHQVIAMCW--NGNLLSCGTI---GGNILHYDVRTHSDYP--TAI-TREGDVVCGLKWS 301 (507)
Q Consensus 233 i~iwd~~~~~~--~~~~~~-~~~~v~~~~~--~~~~l~~~~~---dg~i~i~d~~~~~~~~--~~~-~~~~~~v~~~~~~ 301 (507)
|.++++.++.. ...+.. .......+.| |+++|+.... ...|+++|+.++.... ..+ ........++.|+
T Consensus 249 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~ 328 (751)
T 2xe4_A 249 VWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH 328 (751)
T ss_dssp EEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred EEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence 88888877542 223322 2233456667 7888777653 3468889988753222 223 2334455566655
Q ss_pred CCCCEEEEEe-C----CcEEEEEcCCCCCCCCeee-ecCCCCCeeEEEEccCCCcEEEEEccCCCC--eEEEEeC-----
Q psy8285 302 PNGRYLASGS-N----NTVKIWDFRQLDAKRPQVN-NQCHLSAVKAIAWCPWEPTLLATGGGICDQ--TVRLWNS----- 368 (507)
Q Consensus 302 ~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~----- 368 (507)
..+.+++... + ..|..+|+.+. ..... +..+...+.--.+++.+..++++... ++ .|.++|+
T Consensus 329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~---~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~--~g~~~l~~~dl~~~~~ 403 (751)
T 2xe4_A 329 GTSHLVILTNEGGAVNHKLLIAPRGQP---SDWSHVLVDHSEDVFMESIAVRSNYLVVAGRR--AGLTRIWTMMADSQDG 403 (751)
T ss_dssp TTTEEEEEECTTTCTTCEEEEEETTST---TCCCCEEECCCSSEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCTTTS
T ss_pred eCCEEEEEeCCCCCCCcEEEEEcCCCc---ccceeeEECCCCCcEEEEEEEECCEEEEEEEe--CCEEEEEEEecccccc
Confidence 4444444433 2 25666676542 11122 22233332222344456677777654 55 4666775
Q ss_pred --CCCCeeeeeecC--CCeEEEEE----CCCCCeEEEEecc--CCCeEEEEeCCCccE
Q psy8285 369 --MNGKEKCHVKTD--SQVTSILW----SEQYRELVTSHGK--QDCSLKMWEYPRLHL 416 (507)
Q Consensus 369 --~~~~~~~~~~~~--~~i~~~~~----s~~~~~l~~~~g~--~d~~i~v~d~~~~~~ 416 (507)
.+++....+... ..+..+.+ ++++..++....+ .-..++.+|+.+++.
T Consensus 404 ~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 404 VFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp CCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred cccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 344413444333 22344433 4566655543222 235688888877653
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.47 E-value=0.00078 Score=61.19 Aligned_cols=268 Identities=8% Similarity=0.017 Sum_probs=147.5
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEec--CCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEY--PTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
.+.++.+.+++ .++++..+.|.. ....++.-..... .. ....+.++.|.+ + .++++ +..+.|.. ....++.
T Consensus 37 ~~~~v~~~~~~~~~~~G~~g~i~~-s~DgG~tW~~~~~~~~~-~~~~~~~i~~~~-~-~~~~~-g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGVNATLME-TRDGGQTWEPRTLVLDH-SDYRFNSVSFQG-N-EGWIV-GEPPIMLH-TTDGGQS 110 (327)
T ss_dssp CEEEEEESSSSCEEEEETTTEEEE-ESSTTSSCEECCCCCSC-CCCEEEEEEEET-T-EEEEE-EETTEEEE-ESSTTSS
T ss_pred cEEEEEECCCCcEEEEcCCCeEEE-eCCCCCCCeECCCCCCC-CCccEEEEEecC-C-eEEEE-ECCCeEEE-ECCCCCC
Confidence 46678886554 666777776633 3333432122221 11 345789999986 3 34444 45665444 2233433
Q ss_pred EEEEe---ecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8285 244 IQKLR---THMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 319 (507)
Q Consensus 244 ~~~~~---~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d 319 (507)
-.... .+...+..+.+ +...++.++.+|.|.. ..+.++.-..........+..+.+.+++++++++.++.+..-+
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~ 189 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTW 189 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEE
T ss_pred ceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEe
Confidence 33322 12345677776 4444445555665432 1222221122223445578899999999988877766655433
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee-----cCCCeEEEEECCCCCe
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-----TDSQVTSILWSEQYRE 394 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~i~~~~~s~~~~~ 394 (507)
-..+...+.+ .......+..+.+.+++ .+++.+. ++.+++.+...++.-..+. ....+..+.+.+++..
T Consensus 190 d~gG~tW~~~--~~~~~~~~~~~~~~~~g-~~~~~~~---~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (327)
T 2xbg_A 190 EPGQTAWEPH--NRTTSRRLHNMGFTPDG-RLWMIVN---GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEV 263 (327)
T ss_dssp CTTCSSCEEE--ECCSSSCEEEEEECTTS-CEEEEET---TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCE
T ss_pred CCCCCceeEC--CCCCCCccceeEECCCC-CEEEEeC---CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEE
Confidence 2112111222 12345678899999987 5666554 7888776433343322222 1235889999988887
Q ss_pred EEEEeccCCCeEEEEeCCCccEEEEee---ccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 395 LVTSHGKQDCSLKMWEYPRLHLIEELK---IHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+++ +. ++.| .+....++.-..+. .....+.++.|.+++ .++.++.+|.|.-++
T Consensus 264 ~~~--g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 264 WLA--GG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EEE--ES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EEE--eC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 776 43 6666 34444444333333 123567888887555 466677889776655
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.45 E-value=0.00045 Score=70.22 Aligned_cols=233 Identities=12% Similarity=-0.015 Sum_probs=144.9
Q ss_pred CeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEee---CCEEEEEecCCeEEEEECCCCC---cCceeeecCCCc
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN---GNLLSCGTIGGNILHYDVRTHS---DYPTAITREGDV 294 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~ 294 (507)
.+|+.+ ....|+..++...+....+. ....+..++|+ +.++++-...+.|+.+++.... .....+......
T Consensus 396 p~Ll~a--n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 396 AYLFFT--NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 472 (791)
T ss_dssp CEEEEE--CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred cccccc--cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence 355554 45678888887655444433 44566788884 3445555556789989887531 122233324455
Q ss_pred eEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC
Q psy8285 295 VCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 372 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 372 (507)
...|++.+.++.|+.+. . +.|.+.++... .....+.........|++.|.+.+|+.+..+ ..+.|...++....
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~---~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~ 548 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD 548 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCC
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCC---eEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCc
Confidence 67899998887777666 3 89999998754 2222222344568899999987788887643 12789999986554
Q ss_pred eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc--ccceeEEEECCCCCEEEEEeCCCcEE
Q psy8285 373 EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH--QERILSAVLSPDQTCVAAASADETIS 449 (507)
Q Consensus 373 ~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~s~~~dg~i~ 449 (507)
....+... .....|++++.+..|+.+ -...+.|..+++........+... -....+|++.. +.++++-...+.|.
T Consensus 549 ~~~lv~~~l~~P~GLavD~~~~~LYwa-D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 549 IYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIF 626 (791)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEE
T ss_pred eEEEEeCCCCCceEEEEecCCCeEEEE-eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEE
Confidence 44444433 578999999888888775 455678999998654443333321 12334566532 23334444567788
Q ss_pred EEecCCCCcccce
Q psy8285 450 IWNCFPRDKKRKA 462 (507)
Q Consensus 450 iw~~~~~~~~~~~ 462 (507)
..+..+++....+
T Consensus 627 ~~dk~tG~~~~~l 639 (791)
T 3m0c_C 627 SANRLTGSDVNLL 639 (791)
T ss_dssp EEETTTCCCCEEE
T ss_pred EEeCCCCcceEEe
Confidence 8887776555443
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.44 E-value=4.5e-05 Score=78.00 Aligned_cols=240 Identities=11% Similarity=-0.015 Sum_probs=134.8
Q ss_pred ceEEEEEc-cCCCeEEEEeCCCC----cEEEEeCCCc-eeEE-EEeecCccEEEEEe--eCCEEEEEecC-----CeEEE
Q psy8285 210 YISCVAWK-PRTTDLAVTNTCTE----YIDLWHEQEE-RLIQ-KLRTHMHQVIAMCW--NGNLLSCGTIG-----GNILH 275 (507)
Q Consensus 210 ~v~~~~~~-~~~~~l~~~~~~dg----~i~iwd~~~~-~~~~-~~~~~~~~v~~~~~--~~~~l~~~~~d-----g~i~i 275 (507)
.+...+|| |||++|+.+.+.+| .|+++|+.++ +.+. .+.. ....+.| |++.|+....+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99999987634333 4999999988 6321 1111 1235667 77777777665 26888
Q ss_pred EECCCCCcCc-eeee-cCCCceEEEEEcCCCCEEEEEe---C-CcEEEEEcCCCCCCCC-eeee-cCCCCCeeEEEEccC
Q psy8285 276 YDVRTHSDYP-TAIT-REGDVVCGLKWSPNGRYLASGS---N-NTVKIWDFRQLDAKRP-QVNN-QCHLSAVKAIAWCPW 347 (507)
Q Consensus 276 ~d~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~~---d-~~i~i~d~~~~~~~~~-~~~~-~~~~~~v~~~~~~~~ 347 (507)
+++.+..... ..+. ........+.|+|||++|+... . ..|+++|+.++.. .. +..+ .........+.|+.
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~- 329 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG- 329 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET-
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee-
Confidence 8887754221 2222 2234466789999999887765 2 5788889876511 12 1222 22344555666543
Q ss_pred CCcEEEEEccC--CCCeEEEEeCCCC-Ceee-eeecCC--CeEEEEECCCCCeEEEEeccCCCe--EEEEeC-------C
Q psy8285 348 EPTLLATGGGI--CDQTVRLWNSMNG-KEKC-HVKTDS--QVTSILWSEQYRELVTSHGKQDCS--LKMWEY-------P 412 (507)
Q Consensus 348 ~~~~~~~~~~~--~d~~i~i~d~~~~-~~~~-~~~~~~--~i~~~~~s~~~~~l~~~~g~~d~~--i~v~d~-------~ 412 (507)
+..+++.+... ....|..+|+.++ +... .+.... .+..+.+. +..|+.. ...++. |.++++ .
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~-~~~~g~~~l~~~dl~~~~~~~~ 406 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVA-GRRAGLTRIWTMMADSQDGVFK 406 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEE-EEETTEEEEEEEECCTTTSCCC
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEE-EEeCCEEEEEEEeccccccccc
Confidence 55666665431 2347888887653 2222 233333 34455554 5566554 456664 566675 3
Q ss_pred CccEEEEeecc-ccceeEEEE----CCCCC-EEEEEeCC---CcEEEEecCCCC
Q psy8285 413 RLHLIEELKIH-QERILSAVL----SPDQT-CVAAASAD---ETISIWNCFPRD 457 (507)
Q Consensus 413 ~~~~~~~~~~~-~~~i~~~~~----s~~~~-~l~s~~~d---g~i~iw~~~~~~ 457 (507)
+++....+.-. ...+..+.+ ++++. ++++.+.. ..+..+|+.+++
T Consensus 407 ~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 407 AGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred CCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 43313333211 122333433 34554 44444332 457777776654
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.42 E-value=0.0002 Score=67.70 Aligned_cols=231 Identities=11% Similarity=0.026 Sum_probs=130.7
Q ss_pred eeeeeCCC---C-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC-----cEEEEeCC
Q psy8285 169 SGLDWGYH---D-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE-----YIDLWHEQ 239 (507)
Q Consensus 169 ~~~~~s~~---~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg-----~i~iwd~~ 239 (507)
..++|+|+ + ++.+-..+.|+.+++.+++...... .......++++++++ |+++ ...+ .+...+..
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~----~~~~P~giavd~dG~-lyVa-d~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT----NIGQCADVNFTLNGD-MVVV-DDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC----CCSCEEEEEECTTCC-EEEE-ECCSCTTSEEEEEECGG
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec----CCCCccEEEECCCCC-EEEE-cCCCCcccceEEEEECC
Confidence 46889984 5 4444334899999998887655433 445689999999999 5555 3321 23333322
Q ss_pred Ccee-EEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeee-cCCCceEEEEEcCCCCEEEEEe-C-
Q psy8285 240 EERL-IQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAIT-REGDVVCGLKWSPNGRYLASGS-N- 312 (507)
Q Consensus 240 ~~~~-~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d- 312 (507)
.+.. ...+. .......+++ ++.+.++-..++.|+.+|..++........ .....-..++|+|+++.|+.+. .
T Consensus 216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 2111 01111 1222334555 355555555677899999876542111111 1122334699999999776666 3
Q ss_pred CcEEEEEcCCCCC-CCCeeeecC---------------CCCCeeEEEE---------ccCCCcEEEEEccCCCCeEEEEe
Q psy8285 313 NTVKIWDFRQLDA-KRPQVNNQC---------------HLSAVKAIAW---------CPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 313 ~~i~i~d~~~~~~-~~~~~~~~~---------------~~~~v~~~~~---------~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
+.|+.+++..... ......+.+ .-.....+++ .+++ .++++..+ .+.|+.++
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~--n~~I~~~~ 371 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRD--SHTVRVLT 371 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETT--TTEEEEEC
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECC--CCEEEEEC
Confidence 8899988753210 000111111 1123567888 5555 66666654 78999998
Q ss_pred CCCCCeeeeeec------------------CCCeEEEEEC-CCCCeEEEEeccCCCeEEEEeCC
Q psy8285 368 SMNGKEKCHVKT------------------DSQVTSILWS-EQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 368 ~~~~~~~~~~~~------------------~~~i~~~~~s-~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
. ++........ -.....++++ ++|..+++ -..++.|+.++++
T Consensus 372 ~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa--D~~n~rIr~i~~e 432 (433)
T 4hw6_A 372 P-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG--DCDNHRVRKIAPE 432 (433)
T ss_dssp T-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE--EGGGTEEEEEEEC
T ss_pred C-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE--eCCCCEEEEEecC
Confidence 5 5543322211 0236788998 55555554 4556778877653
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.41 E-value=0.00033 Score=66.31 Aligned_cols=232 Identities=10% Similarity=0.024 Sum_probs=136.9
Q ss_pred ceEEEEEccC--CCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCC-----eEEEEECCC
Q psy8285 210 YISCVAWKPR--TTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGG-----NILHYDVRT 280 (507)
Q Consensus 210 ~v~~~~~~~~--~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg-----~i~i~d~~~ 280 (507)
....++|+|+ +..|+++ ...+.|+.+|..+++..... ........+++ +++ |+.+...+ .+...+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4578999994 5567766 44489999999877655443 34455778888 577 44444321 233333322
Q ss_pred CCcCceeeecCCCceEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCCCCeeee-c-CCCCCeeEEEEccCCCcEEEEEc
Q psy8285 281 HSDYPTAITREGDVVCGLKWSP-NGRYLASGS-NNTVKIWDFRQLDAKRPQVNN-Q-CHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 281 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
.......+. .......++++| ++.++++-. ++.|+.+|..++ .....+ . +.......++|+|+++.++++..
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g---~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG---TLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC---CEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC---eEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 111111222 233456688999 555544444 488999998755 221121 1 11223347999999987877766
Q ss_pred cCCCCeEEEEeCC--CCCe--eeeeec----------------CCCeEEEEE---------CCCCCeEEEEeccCCCeEE
Q psy8285 357 GICDQTVRLWNSM--NGKE--KCHVKT----------------DSQVTSILW---------SEQYRELVTSHGKQDCSLK 407 (507)
Q Consensus 357 ~~~d~~i~i~d~~--~~~~--~~~~~~----------------~~~i~~~~~---------s~~~~~l~~~~g~~d~~i~ 407 (507)
. .+.|+.++.. ++.. ...+.. -.....+++ .++|..+++ -..++.|+
T Consensus 293 ~--~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva--D~~n~~I~ 368 (433)
T 4hw6_A 293 G--KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC--DRDSHTVR 368 (433)
T ss_dssp T--TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE--ETTTTEEE
T ss_pred C--CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE--ECCCCEEE
Confidence 4 7899998865 2321 111111 124677999 777776666 56678999
Q ss_pred EEeCCCccEEEEeecc------------------ccceeEEEEC-CCCCEEEEEeCCCcEEEEecC
Q psy8285 408 MWEYPRLHLIEELKIH------------------QERILSAVLS-PDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 408 v~d~~~~~~~~~~~~~------------------~~~i~~~~~s-~~~~~l~s~~~dg~i~iw~~~ 454 (507)
.++. ++.. ..+.+. -..-..|+++ +++.++++=...+.|+.++++
T Consensus 369 ~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 369 VLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 9984 5543 333221 1125678888 566655555566777777654
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=0.00038 Score=66.05 Aligned_cols=243 Identities=10% Similarity=0.001 Sum_probs=143.2
Q ss_pred ceEEEEEcc-CCCeEEEEeCCCCcEEEEeCCCceeEEEEeec---CccEEEEEe---------eCCEEEEEecCC-----
Q psy8285 210 YISCVAWKP-RTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH---MHQVIAMCW---------NGNLLSCGTIGG----- 271 (507)
Q Consensus 210 ~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~---------~~~~l~~~~~dg----- 271 (507)
....|+|.| ++..|+++....+.|++.|+.++......... ......++| +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899999 45666666234467999998887766555432 235788888 477666665543
Q ss_pred --eEEEEECCC-CCcCc----eeeecCCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcC-------CCCCCCC-------
Q psy8285 272 --NILHYDVRT-HSDYP----TAITREGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFR-------QLDAKRP------- 328 (507)
Q Consensus 272 --~i~i~d~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~-------~~~~~~~------- 328 (507)
.|.+++... +.... ..+... .....++++|++..|+.+. . +.|..+|+. ++....+
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266666443 12110 122221 2345678899666666555 4 889999997 4422000
Q ss_pred -eee-e-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC--CCCe--eeeeecC----------------CCeE-
Q psy8285 329 -QVN-N-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM--NGKE--KCHVKTD----------------SQVT- 384 (507)
Q Consensus 329 -~~~-~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~--~~~~~~~----------------~~i~- 384 (507)
... + .+.....+.++|+|+++.++++... ...|+.++.. .+.. ...+.+. ....
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~--~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN--NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETT--TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCC--CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 111 1 1123456799999999767776654 7899996643 3321 0122110 1244
Q ss_pred EEEEC-------CCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc------------------------ccceeEEEEC
Q psy8285 385 SILWS-------EQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH------------------------QERILSAVLS 433 (507)
Q Consensus 385 ~~~~s-------~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~------------------------~~~i~~~~~s 433 (507)
.++.. +++.++++ -..+..|+.++ .++. +.++.+. -..-..|+++
T Consensus 377 gv~vd~~~~~~~~~g~lyVa--D~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFV--DRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEE--EGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred EEEEccccccccCCCeEEEE--ECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 45554 45555555 56688999999 4553 3444321 0125678898
Q ss_pred CC-CCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 434 PD-QTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 434 ~~-~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
++ +.++++=..+..|+.+++......
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 86 666666666788888888765443
No 291
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.39 E-value=0.00035 Score=69.27 Aligned_cols=231 Identities=9% Similarity=-0.042 Sum_probs=138.5
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee-EEEEeecCccEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-IQKLRTHMHQVIA 256 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~ 256 (507)
++.-+....|+..++............ .......++|++.+..|+.+-...+.|..+++..... ...+.........
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~--~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~G 88 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVG--GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 88 (619)
T ss_dssp CEEEECSSBEEEECCC---------CB--CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEE
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEc--CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCe
Confidence 556677888999998765322222222 3456889999998888887745678899999876532 2233333345666
Q ss_pred EEee--CC-EEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCCCCee
Q psy8285 257 MCWN--GN-LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 257 ~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~~~~~ 330 (507)
+++| ++ +.++-...+.|.+.+++... ........-.....+++.|.+..|+.+. + +.|...++... ....
T Consensus 89 lAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~---~~~~ 164 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---SRFI 164 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC---SCEE
T ss_pred EEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC---ceEE
Confidence 6663 44 45555567899999998643 2222323444567899999766665554 2 67777776643 2222
Q ss_pred eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEE
Q psy8285 331 NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 331 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~ 409 (507)
...........+++++++..++.+..+ .+.|..+|+............ .....+++..+ .|+.+ -...+.|...
T Consensus 165 l~~~~~~~P~Glald~~~~~LY~aD~~--~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~t-d~~~~~V~~~ 239 (619)
T 3s94_A 165 IINSEIYWPNGLTLDYEEQKLYWADAK--LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWT-DWSTHSILAC 239 (619)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEETT--TCCEEEESSSCCEEC---------CCCEEESSS--EEEEE-CTTTCSEEEE
T ss_pred EEeCCCCCCcEEEEEccCCEEEEEeCC--CCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEe-cCCCCEEEEE
Confidence 222234567899999988888888765 789999998654433322211 33456777655 55553 5567889999
Q ss_pred eCCCccEEEE
Q psy8285 410 EYPRLHLIEE 419 (507)
Q Consensus 410 d~~~~~~~~~ 419 (507)
|..+++....
T Consensus 240 d~~tg~~~~~ 249 (619)
T 3s94_A 240 NKYTGEGLRE 249 (619)
T ss_dssp ESSSCCCCEE
T ss_pred ECCCCcccEE
Confidence 9877654433
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.35 E-value=0.003 Score=62.71 Aligned_cols=118 Identities=5% Similarity=-0.077 Sum_probs=78.5
Q ss_pred CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee-cC-CCeEEEEECCCCCeEEEEeccCCC-eEEEEeCCC
Q psy8285 337 SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TD-SQVTSILWSEQYRELVTSHGKQDC-SLKMWEYPR 413 (507)
Q Consensus 337 ~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~-~~i~~~~~s~~~~~l~~~~g~~d~-~i~v~d~~~ 413 (507)
..+..+++...++.|+.+..+ .+.|.+.++. |+....+. .. .....+++.|...+|+.+-..... .|...++..
T Consensus 389 ~~p~glAvD~~~~nLY~td~~--~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG 465 (628)
T 4a0p_A 389 IQPYDLSIDIYSRYIYWTCEA--TNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG 465 (628)
T ss_dssp CCEEEEEEETTTTEEEEEETT--TTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS
T ss_pred CCcceEEeeccCCeEEEEcCC--CCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC
Confidence 357889999888888888765 8899999985 45444433 22 678999999966666553222222 677777754
Q ss_pred ccEEEEeeccccceeEEEECCCCCEEEEEeC-CCcEEEEecCCCC
Q psy8285 414 LHLIEELKIHQERILSAVLSPDQTCVAAASA-DETISIWNCFPRD 457 (507)
Q Consensus 414 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~ 457 (507)
..........-...+.+++++++..|+.+.. .+.|...++....
T Consensus 466 ~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~ 510 (628)
T 4a0p_A 466 TEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN 510 (628)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc
Confidence 3332223323345688999998777776654 5788888885443
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.33 E-value=0.0033 Score=62.31 Aligned_cols=278 Identities=12% Similarity=0.014 Sum_probs=159.6
Q ss_pred eeeeeCCC-C-EEEE-EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 169 SGLDWGYH-D-TLAV-ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 169 ~~~~~s~~-~-~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
+.|+.+++ + ++.+ +..+.|...++.......+... .......+++..+ .|+.+....+.|...|..+++...
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~---~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG---SLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCE
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC---CCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccE
Confidence 45777764 3 3333 3567888888866544333321 1122346666544 666663567788888877664332
Q ss_pred EEee-----------cC---------------------------ccEEEEEe-------e-------CC-EEEEEecCCe
Q psy8285 246 KLRT-----------HM---------------------------HQVIAMCW-------N-------GN-LLSCGTIGGN 272 (507)
Q Consensus 246 ~~~~-----------~~---------------------------~~v~~~~~-------~-------~~-~l~~~~~dg~ 272 (507)
.+.. |. ....|.+. + .. +|+.+. .+.
T Consensus 249 ~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~~~ 327 (619)
T 3s94_A 249 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR-RTD 327 (619)
T ss_dssp ECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-SSC
T ss_pred EEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc-ccc
Confidence 2210 10 01122222 1 11 233333 456
Q ss_pred EEEEECCCCCcCceeee-cCCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCC
Q psy8285 273 ILHYDVRTHSDYPTAIT-REGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP 349 (507)
Q Consensus 273 i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 349 (507)
|+..++.........+. ..-..+..++|.+.+..|+.+. . +.|+.+++... ...............+++.+.+.
T Consensus 328 i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~---~~~~v~~~~~~~p~GlAvD~~~~ 404 (619)
T 3s94_A 328 LRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS---GSQFVVTAQIAHPDGIAVDWVAR 404 (619)
T ss_dssp EEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSCCCEEEEETTTT
T ss_pred eEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC---ccEEEEECCCCCcCceEEecccC
Confidence 77777765432222221 1224567899999766666665 3 88999988754 22222333335677899998777
Q ss_pred cEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccccee
Q psy8285 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERIL 428 (507)
Q Consensus 350 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~ 428 (507)
+++.+..+ .+.|.+.++........+... .....+++.|...+|+.+--+....|...++............-...+
T Consensus 405 ~lY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~ 482 (619)
T 3s94_A 405 NLYWTDTG--TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPN 482 (619)
T ss_dssp EEEEEETT--TTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEE
T ss_pred cEEEEeCC--CCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCe
Confidence 88888765 889999998755433333222 678999999986666653222346787777754333222233344567
Q ss_pred EEEECCCCCEEEEEeC-CCcEEEEecCCCC
Q psy8285 429 SAVLSPDQTCVAAASA-DETISIWNCFPRD 457 (507)
Q Consensus 429 ~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~ 457 (507)
.|++++++..|+.+.. .+.|...++....
T Consensus 483 GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 483 GLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred eeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 8999987777766654 4678888876543
No 294
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.30 E-value=0.0013 Score=56.59 Aligned_cols=200 Identities=10% Similarity=0.109 Sum_probs=125.7
Q ss_pred EEeecCccEEEEEee--C-CEEEEEecCCeEEEEECCCCCcCceeee-cCCCceEEEEEcCCCCEEEEEe-CCcEEEEEc
Q psy8285 246 KLRTHMHQVIAMCWN--G-NLLSCGTIGGNILHYDVRTHSDYPTAIT-REGDVVCGLKWSPNGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 246 ~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~ 320 (507)
.+.+-...+..++|+ + .++++...++.|...|.. ++ ....+. ........+++.+++.++++.- ++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 344555678999994 3 456667788899999987 44 333332 2335678899999887666543 488999988
Q ss_pred CCCCCCCCeeee------cCCCCCeeEEEEccCCCcEEEEEccCCCC-eEEEEeC-CCCCeeeeeec--------CCCeE
Q psy8285 321 RQLDAKRPQVNN------QCHLSAVKAIAWCPWEPTLLATGGGICDQ-TVRLWNS-MNGKEKCHVKT--------DSQVT 384 (507)
Q Consensus 321 ~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~d~-~i~i~d~-~~~~~~~~~~~--------~~~i~ 384 (507)
........+... .........++|+|.+..++++... +. .|..|+- .....+..+.. -..+.
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~--~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK--NPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES--SSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc--CCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 765211111111 1234456899999998888887653 33 5555551 11112222211 13578
Q ss_pred EEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccc---------cceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 385 SILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ---------ERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 385 ~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+++++|....+++. ..+...|.++|.. ++.+..+.-.. ..-..|+|.++|+. +..++...++.+.
T Consensus 177 ~l~~dp~tg~lliL-S~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~ 250 (255)
T 3qqz_A 177 GAEFNQQKNTLLVL-SHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFT 250 (255)
T ss_dssp EEEEETTTTEEEEE-ETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEE
T ss_pred eEEEcCCCCeEEEE-ECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEE
Confidence 99999987777775 4677899999965 55555443211 24578999999984 4457766655554
No 295
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.28 E-value=0.00096 Score=60.58 Aligned_cols=233 Identities=9% Similarity=0.056 Sum_probs=126.7
Q ss_pred cceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 166 FYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 166 ~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
..+..+.+.++.+++++..+.|+. ....++.-............+..+.+.+++..++++ .+|.|..- ...++.-.
T Consensus 80 ~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~g~v~~S-~DgG~tW~ 155 (327)
T 2xbg_A 80 YRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT--NVGAIYRT-KDSGKNWQ 155 (327)
T ss_dssp CEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE--TTCCEEEE-SSTTSSEE
T ss_pred ccEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe--CCccEEEE-cCCCCCCE
Confidence 346678887766666777775554 333343322222110023457888887777666555 45654322 12233332
Q ss_pred EE-eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCC
Q psy8285 246 KL-RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQ 322 (507)
Q Consensus 246 ~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~ 322 (507)
.. ......+..+.+ ++.+++.+ .+|.+..-+-..+..-..........+..+.+.+++++++.+.+|.+++.+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 156 ALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN 234 (327)
T ss_dssp EEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTE
T ss_pred EeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCC
Confidence 22 234557888888 45565555 455554432111111111122345678889999999887776678887764222
Q ss_pred CCCCCCeeee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec----CCCeEEEEECCCCCeEEE
Q psy8285 323 LDAKRPQVNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT----DSQVTSILWSEQYRELVT 397 (507)
Q Consensus 323 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~ 397 (507)
+.....+... ......+..+.+.+++ .+++++. ++.+ ++....++.-..+.. ...+..+.|.+++..+++
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g~---~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~ 309 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRTPN-EVWLAGG---AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFIL 309 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESSSS-CEEEEES---TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEE
T ss_pred CCeeEeccCCcccCCcceEEEEecCCC-EEEEEeC---CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEE
Confidence 2111111111 0122358889998865 5777665 7766 455555554443331 346788888766665554
Q ss_pred EeccCCCeEEEEeC
Q psy8285 398 SHGKQDCSLKMWEY 411 (507)
Q Consensus 398 ~~g~~d~~i~v~d~ 411 (507)
+.+|.|.-++-
T Consensus 310 ---G~~G~i~~~~~ 320 (327)
T 2xbg_A 310 ---GQKGILLRYVT 320 (327)
T ss_dssp ---CSTTEEEEECC
T ss_pred ---cCCceEEEEcC
Confidence 46887776653
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.22 E-value=0.0017 Score=58.22 Aligned_cols=193 Identities=13% Similarity=0.170 Sum_probs=122.1
Q ss_pred CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC----CCE--EEEEe--C---CcEEEEEcCCCCCCCCe
Q psy8285 261 GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN----GRY--LASGS--N---NTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 261 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l~~~~--d---~~i~i~d~~~~~~~~~~ 329 (507)
..+++.....+-+.+||+. ++ ....+.. +.++.+..-|+ |+. ++.++ + ++|.+|++.... ..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl~-G~-~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--~~l 113 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLD-GK-MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GTL 113 (355)
T ss_dssp GCEEEEEETTTEEEEEETT-SC-EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT--CCE
T ss_pred ccEEEEEcCCCCEEEEcCC-Cc-EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC--Cce
Confidence 3456666677889999994 44 3444432 56677766652 222 44444 3 579999774221 234
Q ss_pred eeecC------CC-CCeeEEEE--ccCCC-cEEEEEccCCCCeEEEEeCC-------CCCeeeeeecCCCeEEEEECCCC
Q psy8285 330 VNNQC------HL-SAVKAIAW--CPWEP-TLLATGGGICDQTVRLWNSM-------NGKEKCHVKTDSQVTSILWSEQY 392 (507)
Q Consensus 330 ~~~~~------~~-~~v~~~~~--~~~~~-~~~~~~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~i~~~~~s~~~ 392 (507)
..+.. .. ..++.+++ +|.+. ..+.+... ++.+..|++. +.+.++.+...+.+..|...+..
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k--~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~ 191 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK--EGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEY 191 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS--SSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC--CCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCC
Confidence 43311 11 56677777 77544 23333333 8999999883 33567788888899999999999
Q ss_pred CeEEEEeccCCCeEEEEeCC-----CccEEEEee-cc-ccceeEEEE--CCCCC-EEEEEe-CCCcEEEEecC-CCCccc
Q psy8285 393 RELVTSHGKQDCSLKMWEYP-----RLHLIEELK-IH-QERILSAVL--SPDQT-CVAAAS-ADETISIWNCF-PRDKKR 460 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~-----~~~~~~~~~-~~-~~~i~~~~~--s~~~~-~l~s~~-~dg~i~iw~~~-~~~~~~ 460 (507)
..|++ +.++..|..++.. +++.+..+. ++ ...+..|+. .++++ +|++++ .+.++.+|+.. +.+.+.
T Consensus 192 g~Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 192 GRLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TEEEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CeEEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 99999 7788777777754 345555442 22 235777877 55666 666666 56799999997 445444
Q ss_pred cee
Q psy8285 461 KAR 463 (507)
Q Consensus 461 ~~~ 463 (507)
.+.
T Consensus 270 ~f~ 272 (355)
T 3amr_A 270 DFR 272 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 297
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.17 E-value=0.001 Score=59.55 Aligned_cols=192 Identities=11% Similarity=0.188 Sum_probs=118.0
Q ss_pred CeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe------eCCE--E-EEEec---CCeEEEEECCCCCcCceee
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW------NGNL--L-SCGTI---GGNILHYDVRTHSDYPTAI 288 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~------~~~~--l-~~~~~---dg~i~i~d~~~~~~~~~~~ 288 (507)
..++.. ...+-+.+||+ +++.++.+.. +.+..+.. .++. + ++... +++|.+|++..........
T Consensus 41 s~ii~t-~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 41 SKLITT-NKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp CEEEEE-ETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred cEEEEE-cCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 455555 78889999999 7888888764 34444444 2332 3 33333 4789999774222122222
Q ss_pred ec------CC-CceEEEEE--cCC-CCE-EEEEe-CCcEEEEEcCCCC----CCCCeeeecCCCCCeeEEEEccCCCcEE
Q psy8285 289 TR------EG-DVVCGLKW--SPN-GRY-LASGS-NNTVKIWDFRQLD----AKRPQVNNQCHLSAVKAIAWCPWEPTLL 352 (507)
Q Consensus 289 ~~------~~-~~v~~~~~--~~~-~~~-l~~~~-d~~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 352 (507)
.. .. ..+..+++ +|. +++ +++.. ++.+..|++.... ..+.+.++. -.+.+..+...+....++
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCeEE
Confidence 11 11 55667777 674 553 44444 5999999884321 113445554 346788889988776777
Q ss_pred EEEccCCCCeEEEEeCC-----CCCeeeeeecC---CCeEEEEE--CCCCC-eEEEEeccCCCeEEEEeCC-CccEEEEe
Q psy8285 353 ATGGGICDQTVRLWNSM-----NGKEKCHVKTD---SQVTSILW--SEQYR-ELVTSHGKQDCSLKMWEYP-RLHLIEEL 420 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~-----~~~~~~~~~~~---~~i~~~~~--s~~~~-~l~~~~g~~d~~i~v~d~~-~~~~~~~~ 420 (507)
+.-. +.-|..++.+ +++.+..+... ..+..+++ .++++ +|+++ .-.++...+||.. +.+.+..+
T Consensus 196 v~eE---d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS-sQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 196 IAEE---DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS-SQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEET---TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE-EGGGTEEEEEESSTTCCEEEEE
T ss_pred Eecc---cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE-cCCCCEEEEEECCCCCcEEEEE
Confidence 6543 6667777755 23455444333 46788887 56666 67774 3457799999996 66777776
Q ss_pred e
Q psy8285 421 K 421 (507)
Q Consensus 421 ~ 421 (507)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 4
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=0.0054 Score=58.25 Aligned_cols=242 Identities=11% Similarity=0.046 Sum_probs=137.3
Q ss_pred eeeeeCCC--C-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEE-------ccCCCeEEEEeCCCC------
Q psy8285 169 SGLDWGYH--D-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAW-------KPRTTDLAVTNTCTE------ 231 (507)
Q Consensus 169 ~~~~~s~~--~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~~dg------ 231 (507)
..|++.|. + ++++. ..+.|++.|++++....+.............++| +++++.|+++...++
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 45888873 3 44444 3468999999888877665532112345899999 999997777723332
Q ss_pred cEEEEeCCC-ceeE-----EEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECC-------CCCc-----C-----c
Q psy8285 232 YIDLWHEQE-ERLI-----QKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVR-------THSD-----Y-----P 285 (507)
Q Consensus 232 ~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~-------~~~~-----~-----~ 285 (507)
.|.+++... +... ..+.... ....++. ++.++++-..++.|..+|+. ++.. + .
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~ 300 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF 300 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred eEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccc
Confidence 266665433 1221 2222211 2234444 35566667778889999987 4432 0 0
Q ss_pred -eee-ecCCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCC-CCCeeeecCC---------------CCCee-EEEE
Q psy8285 286 -TAI-TREGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDA-KRPQVNNQCH---------------LSAVK-AIAW 344 (507)
Q Consensus 286 -~~~-~~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~-~~~~~~~~~~---------------~~~v~-~~~~ 344 (507)
... .......+.++|+|+++.|+.+. . +.|+.++...... ......+-+. -.... .+..
T Consensus 301 ~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v 380 (496)
T 3kya_A 301 KQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV 380 (496)
T ss_dssp EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE
T ss_pred ceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEE
Confidence 111 12234467899999999766665 3 8888876643210 0000111111 11233 3444
Q ss_pred c-------cCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-------------------------CCeEEEEECCC-
Q psy8285 345 C-------PWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-------------------------SQVTSILWSEQ- 391 (507)
Q Consensus 345 ~-------~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------------~~i~~~~~s~~- 391 (507)
. +++ .|+++-.+ ...|+.++ .++.. .++.+. .....++++++
T Consensus 381 d~~~~~~~~~g-~lyVaD~~--N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 381 KNPDYTGEEEY-DFYFVDRL--NFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp ECTTCCSSCCE-EEEEEEGG--GTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred ccccccccCCC-eEEEEECC--CCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 3 334 66666654 88999999 45543 333211 23678888886
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccEEE
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHLIE 418 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~~~ 418 (507)
+..+++ -..+..|+.+++.......
T Consensus 456 g~lyVa--D~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 456 EMFYVH--DQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TEEEEE--ETTTTEEEEEEECCCC---
T ss_pred CEEEEE--eCCCCEEEEEECCCCcccc
Confidence 555555 5667788888876554443
No 299
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.08 E-value=0.00035 Score=70.35 Aligned_cols=258 Identities=12% Similarity=0.048 Sum_probs=138.4
Q ss_pred EEEEECCCCceeEEEecCCCCCCceEEEEEcc-CCCeEEEEeCCCC-----------cEEEEeCCCceeE--EEEee-cC
Q psy8285 187 VYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP-RTTDLAVTNTCTE-----------YIDLWHEQEERLI--QKLRT-HM 251 (507)
Q Consensus 187 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg-----------~i~iwd~~~~~~~--~~~~~-~~ 251 (507)
+..+|...++......++. . -.++++.+ +++.++.+| .+. .+.+||..+++.. ..+.. +.
T Consensus 168 ~~~~dp~~~~W~~~~~~P~---~-~~~~av~~~~g~l~v~GG-~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~ 242 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPI---V-PAAAAIEPTSGRVLMWSS-YRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD 242 (656)
T ss_dssp CCCCCTTSCEEEEEEECSS---C-CSEEEEETTTTEEEEEEE-CCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC
T ss_pred cccCCCCCCeeeeeccCCC---C-ceeEEEEecCCEEEEEec-ccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC
Confidence 4445566666666665542 2 23566777 777777773 322 5889999877532 22322 22
Q ss_pred ccEEEEEe--eCCEEEEEec-CCeEEEEECCCCCcCc-eeeecCCCceEEEEEcCCCCEEEEEe--C-----CcEEEEEc
Q psy8285 252 HQVIAMCW--NGNLLSCGTI-GGNILHYDVRTHSDYP-TAITREGDVVCGLKWSPNGRYLASGS--N-----NTVKIWDF 320 (507)
Q Consensus 252 ~~v~~~~~--~~~~l~~~~~-dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~--d-----~~i~i~d~ 320 (507)
....++++ ++++++.|+. +..+.+||..+.+-.. ..+.. ...-.+++..+++++++.|+ + ..+.+||.
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence 22223333 7889999884 4579999988654111 11111 11223456667999988887 2 46899998
Q ss_pred CCCCCCCCeeeecC-----CCCCeeEEEEccCCCcEEEEEcc-------CCCCeEEEEeCCCCCeeeeeecC--------
Q psy8285 321 RQLDAKRPQVNNQC-----HLSAVKAIAWCPWEPTLLATGGG-------ICDQTVRLWNSMNGKEKCHVKTD-------- 380 (507)
Q Consensus 321 ~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~-------~~d~~i~i~d~~~~~~~~~~~~~-------- 380 (507)
.+.. ...+.. ....-....+..++ ++++.++. .....+..||..+..........
T Consensus 322 ~t~~----W~~~~~~~~~p~~~~~~~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 322 SSKT----WTSLPNAKVNPMLTADKQGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396 (656)
T ss_dssp TTTE----EEEETTSCSGGGCCCCTTGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred CCCc----ceeCCCccccccccccccceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCC
Confidence 7641 111100 00000000111222 33333321 01456788998877643322211
Q ss_pred --CCeEEEEECC-CCCeEEEEeccCCC-----------eEEEEeCCCccEEEEe--eccccce-eEEEECCCCCEEEEEe
Q psy8285 381 --SQVTSILWSE-QYRELVTSHGKQDC-----------SLKMWEYPRLHLIEEL--KIHQERI-LSAVLSPDQTCVAAAS 443 (507)
Q Consensus 381 --~~i~~~~~s~-~~~~l~~~~g~~d~-----------~i~v~d~~~~~~~~~~--~~~~~~i-~~~~~s~~~~~l~s~~ 443 (507)
..-.++.+.. +++.+++ |+.++ .|.+||..+.+-.... ..+..+. .+....|+++.++.|+
T Consensus 397 ~~~~~~av~~~~~~~~i~v~--GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG 474 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTF--GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 474 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEE--CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred CCCCCceEeccCCCCeEEEE--eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECC
Confidence 1234455544 5666666 55322 6788887765433322 1122222 3446678999999988
Q ss_pred CC-----------CcEEEEecCCCC
Q psy8285 444 AD-----------ETISIWNCFPRD 457 (507)
Q Consensus 444 ~d-----------g~i~iw~~~~~~ 457 (507)
.+ ..+.+||..+.+
T Consensus 475 ~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 475 QRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp BSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred cccCcCcCCCCcccceEEEcCCCCc
Confidence 54 468999987654
No 300
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.07 E-value=0.0018 Score=59.36 Aligned_cols=227 Identities=14% Similarity=0.105 Sum_probs=122.2
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee--EEEEe---ecCccEEEEEeeC-----CEEEEEecC------C
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL--IQKLR---THMHQVIAMCWNG-----NLLSCGTIG------G 271 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~-----~~l~~~~~d------g 271 (507)
-.....++|.|+|+.++ + ..+|.|++++ +++. +..+. ........++++. ..|..+... +
T Consensus 30 l~~P~~ia~~pdG~l~V-~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-A-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCEEE-E-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeEEE-E-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 34578999999998555 4 4679999998 4432 22111 1235678889843 455555432 5
Q ss_pred eEEEEECCCCCc-----Cceeee---cCCCceEEEEEcCCCCEEEEEeC--------------CcEEEEEcCCCC---C-
Q psy8285 272 NILHYDVRTHSD-----YPTAIT---REGDVVCGLKWSPNGRYLASGSN--------------NTVKIWDFRQLD---A- 325 (507)
Q Consensus 272 ~i~i~d~~~~~~-----~~~~~~---~~~~~v~~~~~~~~~~~l~~~~d--------------~~i~i~d~~~~~---~- 325 (507)
.|..++...... ....+. ........++|.|||.++++.++ +.|.-++....- .
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 788888764310 111122 11112357999999987776543 345555543200 0
Q ss_pred ------CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC-------eEEEEeCCC----------------CCeeee
Q psy8285 326 ------KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ-------TVRLWNSMN----------------GKEKCH 376 (507)
Q Consensus 326 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~-------~i~i~d~~~----------------~~~~~~ 376 (507)
........++ .....++|+|+...++++..+ .+. .|.+..... ..+...
T Consensus 186 f~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 186 FLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred ccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 0011111122 235689999954467666543 122 244432211 012223
Q ss_pred eecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE------EEEeeccccceeEEEECCCCCEEEEEe
Q psy8285 377 VKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL------IEELKIHQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 377 ~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~------~~~~~~~~~~i~~~~~s~~~~~l~s~~ 443 (507)
+..+.....++| .+|..+++ ....+.|...++..... ...+......+..+++.|||.++++..
T Consensus 264 ~~~~~ap~G~~~-~~G~l~v~--~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 WPQGFPPGNLAF-FRGDLYVA--GLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CTTCCCEEEEEE-ETTEEEEE--ETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCCCcceEE-ECCEEEEE--ECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 323345667777 45665555 45567788877754321 122222245789999999998766654
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.06 E-value=2.3e-05 Score=79.12 Aligned_cols=227 Identities=13% Similarity=-0.009 Sum_probs=131.9
Q ss_pred CCCcEEEEeCCCceeEEEEeecCccEEEEEee--CCEEEEE-ecCCeEEEEECCCC---CcCceeeecCCCceEEEEEcC
Q psy8285 229 CTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG-TIGGNILHYDVRTH---SDYPTAITREGDVVCGLKWSP 302 (507)
Q Consensus 229 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~ 302 (507)
....|+..++.+.+....+.. ...+..++|+ +..|+.+ ...+.|+.+++... ......+.........+++.+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 456788888877654433332 2345577774 4555554 45578999998751 111222222222345678886
Q ss_pred CCCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 303 NGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 303 ~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
.+..|+.+. .+.|.++++... .....+.........++++|.+.+|+++..+ ..+.|..+++........+...
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~---~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~~l~~~~ 538 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGV---KRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTEN 538 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSC---CEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCCEESCSS
T ss_pred eCCcEEEEeccCCeEEEEecCCC---ceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCeeEEEeCC
Confidence 555555544 489999998754 2222222223456789999987777776542 1267888877543322222222
Q ss_pred -CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec--cccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 381 -SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI--HQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 381 -~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
.....|+|+|++..|+.+ -...+.|.++++........+.. .......|++..+ .++++....+.|..++..+++
T Consensus 539 l~~PnGlavd~~~~~LY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CSSCCCEEECTTTCCEEEE-ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred CCCccEEEEeccCCEEEEE-ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 457789999988777765 45677899999865333222221 1122345566443 445555667889999987766
Q ss_pred cccce
Q psy8285 458 KKRKA 462 (507)
Q Consensus 458 ~~~~~ 462 (507)
....+
T Consensus 617 ~~~~i 621 (699)
T 1n7d_A 617 DVNLL 621 (699)
T ss_dssp EEECC
T ss_pred ceEEe
Confidence 55444
No 302
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.02 E-value=0.001 Score=70.05 Aligned_cols=275 Identities=8% Similarity=0.084 Sum_probs=173.4
Q ss_pred eeeeCCCCEEEEE----cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 170 GLDWGYHDTLAVA----LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 170 ~~~~s~~~~~~~~----~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
.+.+..|.++++- ...+|.|.|+.+++........ .-+.-.+|..+.+|.- ...++.|+|+.+...++
T Consensus 29 ~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~------AdsAIMnP~~~iiALr--ag~~lQiFnl~~k~klk 100 (1630)
T 1xi4_A 29 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS------ADSAIMNPASKVIALK--AGKTLQIFNIEMKSKMK 100 (1630)
T ss_pred ceeeecCceEEEEecCCCCceEEEEECCCCCCccccccc------chhhccCCCcceEEEe--cCCeEEEeehHHhhhhc
Confidence 3455556655542 3447888888876644322222 2344568888777766 47899999999887777
Q ss_pred EEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecC----CCceEEEEEcCCCCEEEEEe--------C
Q psy8285 246 KLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE----GDVVCGLKWSPNGRYLASGS--------N 312 (507)
Q Consensus 246 ~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~--------d 312 (507)
...- ..+|.--.| +.+.|+..+ +..|+-|++.....+.+.+..| ...|..-..+++.++++..+ .
T Consensus 101 s~~~-~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~ 178 (1630)
T 1xi4_A 101 AHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV 178 (1630)
T ss_pred cccc-CCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCccc
Confidence 6653 345666677 778777776 5689999997655555555554 45677777888999876432 2
Q ss_pred CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEc--cCCCcEEEEEcc-CCCCeEEEEeCCCC---Ceee-----e--eec
Q psy8285 313 NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWC--PWEPTLLATGGG-ICDQTVRLWNSMNG---KEKC-----H--VKT 379 (507)
Q Consensus 313 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~-~~d~~i~i~d~~~~---~~~~-----~--~~~ 379 (507)
|.+.+|..+. +..+.+.+|.+....+... +....+++.+.. ...+.++|.++... .+.. . +..
T Consensus 179 G~mQLyS~er----~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~ 254 (1630)
T 1xi4_A 179 GAMQLYSVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 254 (1630)
T ss_pred ceeeeeeccc----ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc
Confidence 7889998886 3555667776665554443 222345554431 11368999988543 1111 0 111
Q ss_pred ---CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 380 ---DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 380 ---~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
..-..++..++....+.. -+.-|.|++||+.++.++..-+-...+|...+-+....=++.....|.|.--.+...
T Consensus 255 ~~~~Dfpv~~~vs~k~g~iy~--itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 255 EAQNDFPVAMQISEKHDVVFL--ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred ccccCcceEEEeccccCEEEE--EecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 123567788888777777 568899999999999887765544455544444433333444556777766666655
Q ss_pred Cccc
Q psy8285 457 DKKR 460 (507)
Q Consensus 457 ~~~~ 460 (507)
..+.
T Consensus 333 ~iv~ 336 (1630)
T 1xi4_A 333 NIIP 336 (1630)
T ss_pred hhhh
Confidence 5443
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.85 E-value=0.017 Score=52.87 Aligned_cols=221 Identities=13% Similarity=0.102 Sum_probs=120.9
Q ss_pred eeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecC---CCCCCceEEEEEccC---CCeEEEEeCCC-----CcEEEE
Q psy8285 169 SGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYP---TYDNAYISCVAWKPR---TTDLAVTNTCT-----EYIDLW 236 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~~d-----g~i~iw 236 (507)
..++|.|++ ++++..++.|++++ +++.......+ . .......++|+|+ +..|.++.... +.|..+
T Consensus 34 ~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~-g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 34 WALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHR-GESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCS-TTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeec-CCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 468999998 66667789999998 45543333221 1 3456899999998 66666652322 678888
Q ss_pred eCCCce-----e-EEEEe---ecCccEEEEEe--eCCEEEEEec-------------CCeEEEEECCCC-----------
Q psy8285 237 HEQEER-----L-IQKLR---THMHQVIAMCW--NGNLLSCGTI-------------GGNILHYDVRTH----------- 281 (507)
Q Consensus 237 d~~~~~-----~-~~~~~---~~~~~v~~~~~--~~~~l~~~~~-------------dg~i~i~d~~~~----------- 281 (507)
+...+. . +..+. ........+.| ++.+.++.+. .|.|..++....
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~ 190 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRR 190 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCT
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCC
Confidence 876431 1 11122 11112246777 6765555432 256666666531
Q ss_pred -CcCceeeecCCCceEEEEEcC-CCCEEEEEeC-CcE------EEEEcCCCC---------------CCCCeeeecCCCC
Q psy8285 282 -SDYPTAITREGDVVCGLKWSP-NGRYLASGSN-NTV------KIWDFRQLD---------------AKRPQVNNQCHLS 337 (507)
Q Consensus 282 -~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~d-~~i------~i~d~~~~~---------------~~~~~~~~~~~~~ 337 (507)
........++ .....++|+| +++++++-.. ..+ .+.-+..+. ...+...+. +..
T Consensus 191 ~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ 268 (352)
T 2ism_A 191 GARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGF 268 (352)
T ss_dssp TSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCC
T ss_pred CCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCC
Confidence 0111222233 2356789999 6666555442 321 233333321 012333332 233
Q ss_pred CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe-------eeeeecCCCeEEEEECCCCCeEEEE
Q psy8285 338 AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE-------KCHVKTDSQVTSILWSEQYRELVTS 398 (507)
Q Consensus 338 ~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~i~~~~~s~~~~~l~~~ 398 (507)
....++| .++ .++++... .+.|...++..... ...+.....+..+++.|||..+++.
T Consensus 269 ap~G~~~-~~G-~l~v~~~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 269 PPGNLAF-FRG-DLYVAGLR--GQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CEEEEEE-ETT-EEEEEETT--TTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCcceEE-ECC-EEEEEECC--CCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 4567777 345 55555443 67888877754431 1122233678999999999777664
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.84 E-value=0.017 Score=52.83 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=125.2
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-eEEEEe---ecCccEEEEEee-----CCEEEEEec----C----
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-LIQKLR---THMHQVIAMCWN-----GNLLSCGTI----G---- 270 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~-----~~~l~~~~~----d---- 270 (507)
-.....|+|.|+|+.++ + ..+|.|++++ .+++ .+..+. ........++++ +..|.++.. +
T Consensus 28 l~~P~~ia~~pdG~l~V-~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-T-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETTEEEE-E-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCCeEEE-E-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 34578999999997544 4 4679999997 4454 222211 123567888984 345555443 2
Q ss_pred CeEEEEECCCCC------c-Cceeeec-CCCceEEEEEcCCCCEEEEEeC--------------CcEEEEEcCCCCCC--
Q psy8285 271 GNILHYDVRTHS------D-YPTAITR-EGDVVCGLKWSPNGRYLASGSN--------------NTVKIWDFRQLDAK-- 326 (507)
Q Consensus 271 g~i~i~d~~~~~------~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~d--------------~~i~i~d~~~~~~~-- 326 (507)
..|..|+..... . ....+.. .......++|.|||.++++.++ +.|.-++.... ..
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~ 183 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPAD 183 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTT
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCC
Confidence 567778776531 0 0111111 1112356899999987777543 24444444321 00
Q ss_pred ----CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC--CeEEEEeCCC--------C--------Ceeeee-ecCCCe
Q psy8285 327 ----RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD--QTVRLWNSMN--------G--------KEKCHV-KTDSQV 383 (507)
Q Consensus 327 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d--~~i~i~d~~~--------~--------~~~~~~-~~~~~i 383 (507)
.......++. ....++|+|+...++++-.+ .+ ..|.+..... + .++..+ ..+...
T Consensus 184 npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g-~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 184 NPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHG-PVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp SSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECC-SSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecC-CCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 0011112233 34689999954467776543 12 1344433111 0 122233 223467
Q ss_pred EEEEEC-------CCCCeEEEEeccCCCeEEEEeCCCc-cEE--EEe-eccccceeEEEECCCCCEEEEEe
Q psy8285 384 TSILWS-------EQYRELVTSHGKQDCSLKMWEYPRL-HLI--EEL-KIHQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 384 ~~~~~s-------~~~~~l~~~~g~~d~~i~v~d~~~~-~~~--~~~-~~~~~~i~~~~~s~~~~~l~s~~ 443 (507)
..+.|. .+|.++++ ....+.|...++... +.. ..+ .+....+..+++.|||.++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~--~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIA--CLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEE--ETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEE--EcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 888884 46666666 556678888888753 222 222 22245788999999997666654
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.83 E-value=0.0025 Score=56.55 Aligned_cols=156 Identities=6% Similarity=-0.020 Sum_probs=105.1
Q ss_pred CceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCee-eecC----C--CCCeeEEEE---ccCCCcEEEEEcc---
Q psy8285 293 DVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQV-NNQC----H--LSAVKAIAW---CPWEPTLLATGGG--- 357 (507)
Q Consensus 293 ~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~-~~~~----~--~~~v~~~~~---~~~~~~~~~~~~~--- 357 (507)
..-.+++|.+....+..++ .++|..||...+ .... .+.. . ...+..+.| .|++ .|+++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~---~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~a 88 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ---SHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKS 88 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTC---CEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCC---eEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEccccc
Confidence 3445788988777777777 599999998754 2221 2221 1 113579999 6885 55554220
Q ss_pred --------CCCCeEEEEeCC---CCCeeeeeec-------------C-CCeEEEEECCCCCeEEEEeccCC-CeEEEEeC
Q psy8285 358 --------ICDQTVRLWNSM---NGKEKCHVKT-------------D-SQVTSILWSEQYRELVTSHGKQD-CSLKMWEY 411 (507)
Q Consensus 358 --------~~d~~i~i~d~~---~~~~~~~~~~-------------~-~~i~~~~~s~~~~~l~~~~g~~d-~~i~v~d~ 411 (507)
+.+..+..||+. +++.+..... . .....++..++|+..++ ++.. +.|..++.
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt--~s~~~~~I~rV~p 166 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA--FALGMPAIARVSA 166 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE--EEESSCEEEEECT
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe--CCCCCCeEEEEeC
Confidence 016789999999 7877665542 1 24789999999998888 5666 77777775
Q ss_pred CCccEEEEee------ccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 412 PRLHLIEELK------IHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 412 ~~~~~~~~~~------~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
... .+..+. ......+.|+++|+|..|++....|.+..+|+..
T Consensus 167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 167 DGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 433 333221 1122367999999999988887799999999884
No 306
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.79 E-value=0.027 Score=59.98 Aligned_cols=267 Identities=11% Similarity=0.115 Sum_probs=148.6
Q ss_pred CCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC-------------------------
Q psy8285 175 YHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC------------------------- 229 (507)
Q Consensus 175 ~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------------------------- 229 (507)
|++++.+ .++.++|..+.+.+.....+++ -...+..++++|+.+.++++.+.
T Consensus 706 ~~g~v~~-~~~~LrI~~i~~~~~~~~~~ip--L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1158)
T 3ei3_A 706 PDSLALA-NNSTLTIGTIDEIQKLHIRTVP--LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSS 782 (1158)
T ss_dssp TTEEEEE-CSSCEEEEEECCSSSEEEEEEE--CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEE
T ss_pred CCcEEEE-cCCceEEEEecccCCeeEEEEe--CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhc
Confidence 4456644 4566999888654443444433 34678888898887766554111
Q ss_pred -----------------------CCcEEEEeCCCceeEEEEee-cCccEEEEEe----e--CCEEEEEe----------c
Q psy8285 230 -----------------------TEYIDLWHEQEERLIQKLRT-HMHQVIAMCW----N--GNLLSCGT----------I 269 (507)
Q Consensus 230 -----------------------dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~----~--~~~l~~~~----------~ 269 (507)
.+.|++.|..+.+.+..+.- ....+.+++. + ..+|++|+ .
T Consensus 783 ~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~ 862 (1158)
T 3ei3_A 783 VSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPK 862 (1158)
T ss_dssp ECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCC
T ss_pred ccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCC
Confidence 02366677666666555542 2333445443 2 46888886 3
Q ss_pred CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCC
Q psy8285 270 GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP 349 (507)
Q Consensus 270 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 349 (507)
.|.|++|++...+.........++++++++-- +| +|++|-...|++|++... +.+..-..+-..+..+.....++
T Consensus 863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~---~~L~~~~~~~~~i~~~~l~~~~~ 937 (1158)
T 3ei3_A 863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTE---KELRTECNHYNNIMALYLKTKGD 937 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTT---SCEEEEEEECCCSCEEEEEEETT
T ss_pred ceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCC---ceEEEEeeccccEEEEEEeccCC
Confidence 47899999874432222233456788887744 34 566666789999999865 33331111111233323323354
Q ss_pred cEEEEEccCCCCeEEE--EeCCCCCeeeeeec--CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc-------cEEE
Q psy8285 350 TLLATGGGICDQTVRL--WNSMNGKEKCHVKT--DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL-------HLIE 418 (507)
Q Consensus 350 ~~~~~~~~~~d~~i~i--~d~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~-------~~~~ 418 (507)
.+++ +.- -..+.+ |+...++....-+. ...++++.+-.++ .++. +..+|.+.++..... +.+.
T Consensus 938 ~I~v-gD~--~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~--aD~~gNl~vl~~~~~~~~~~~~~~L~ 1011 (1158)
T 3ei3_A 938 FILV-GDL--MRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLG--AENAFNLFVCQKDSAATTDEERQHLQ 1011 (1158)
T ss_dssp EEEE-EES--SBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEE--EETTSEEEEEEECTTCCSTTGGGBEE
T ss_pred EEEE-EEh--hheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEE--EcCCCcEEEEecCCCCCCccccceee
Confidence 4554 432 344444 55544433322222 2468888887554 5555 578899999876431 2221
Q ss_pred Ee-ecc-ccceeEEE---ECCC---------CCEEEEEeCCCcEEEEecCC
Q psy8285 419 EL-KIH-QERILSAV---LSPD---------QTCVAAASADETISIWNCFP 455 (507)
Q Consensus 419 ~~-~~~-~~~i~~~~---~s~~---------~~~l~s~~~dg~i~iw~~~~ 455 (507)
.. .-| ...|+++. +.+. ...++.++.+|.|.+.-.-+
T Consensus 1012 ~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~pl~ 1062 (1158)
T 3ei3_A 1012 EVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLS 1062 (1158)
T ss_dssp EEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEEEC
T ss_pred eEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEEcC
Confidence 11 112 33466654 2332 23577888999988876554
No 307
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.59 E-value=0.042 Score=50.22 Aligned_cols=235 Identities=11% Similarity=0.094 Sum_probs=124.9
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE-------eecCccEEEEEee-----CCEEEEEe-c-------
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL-------RTHMHQVIAMCWN-----GNLLSCGT-I------- 269 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~-----~~~l~~~~-~------- 269 (507)
....|+|.|+|+.|+++ ...|.|++++.. ++....+ .........++++ +..|..+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 46899999999844455 578999999853 3321111 1123456788884 34444443 2
Q ss_pred CCeEEEEECCCCCc----Cceeeec------CCCceEEEEEcCCCCEEEEEeC--------------CcEEEEEcCCCCC
Q psy8285 270 GGNILHYDVRTHSD----YPTAITR------EGDVVCGLKWSPNGRYLASGSN--------------NTVKIWDFRQLDA 325 (507)
Q Consensus 270 dg~i~i~d~~~~~~----~~~~~~~------~~~~v~~~~~~~~~~~l~~~~d--------------~~i~i~d~~~~~~ 325 (507)
...|..+++..... ....+.. ....-..++|.|||.++++.++ +.|.-++....-.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 23566676653310 1111111 0112356999999977666544 3466666543100
Q ss_pred -----------CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC----------------------
Q psy8285 326 -----------KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK---------------------- 372 (507)
Q Consensus 326 -----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---------------------- 372 (507)
...+. ..++ .....++|+|....++++-.+ .++.=.|.-+..+.
T Consensus 177 ~~npf~~~~~~~~~i~-a~G~-rnp~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIW-SYGI-RNPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp TTCTTTTSTTSCTTEE-EECC-SEEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCcCCCCCCccEE-EEcC-cCccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 01111 1223 346789999944467765542 12111222221111
Q ss_pred ---------eeeeeecCCCeEEEEECC-------CCCeEEEEeccCCCeEEEEeCCCccEEEE--e-eccccceeEEEEC
Q psy8285 373 ---------EKCHVKTDSQVTSILWSE-------QYRELVTSHGKQDCSLKMWEYPRLHLIEE--L-KIHQERILSAVLS 433 (507)
Q Consensus 373 ---------~~~~~~~~~~i~~~~~s~-------~~~~l~~~~g~~d~~i~v~d~~~~~~~~~--~-~~~~~~i~~~~~s 433 (507)
++..+..+..+..+.|.. +|.++++ ....+.|...++..++.... + ......+..+++.
T Consensus 254 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIG--ALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp BSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEE--EccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 112222334567777764 4666666 45677888888776544322 2 2223578999999
Q ss_pred CCCCEEEEEe-CCCcEEEEec
Q psy8285 434 PDQTCVAAAS-ADETISIWNC 453 (507)
Q Consensus 434 ~~~~~l~s~~-~dg~i~iw~~ 453 (507)
|||.++++.. .+| +||.+
T Consensus 332 pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 332 PDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp TTSCEEEEECSTTE--EEEEE
T ss_pred CCCcEEEEEeCCCC--EEEEE
Confidence 9998665433 334 45554
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.42 E-value=0.015 Score=52.86 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=96.3
Q ss_pred ceEEEEEcCCCCEEEEE-------------eCCcEEEEEcCCCCCCCCeeeecC-----CCCCeeEEEEcc--CCC-cEE
Q psy8285 294 VVCGLKWSPNGRYLASG-------------SNNTVKIWDFRQLDAKRPQVNNQC-----HLSAVKAIAWCP--WEP-TLL 352 (507)
Q Consensus 294 ~v~~~~~~~~~~~l~~~-------------~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~~~ 352 (507)
....+...|+|..++++ .+|.|.++|+.+.........+.+ .......+.+.+ ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34567778887766665 258999999874311111112222 223567788766 343 466
Q ss_pred EEEccCCCCeEEEEeCCCCC-e---eeeeecC--CCeEEEEECCCCCeEEEEec---------------cCCCeEEEEeC
Q psy8285 353 ATGGGICDQTVRLWNSMNGK-E---KCHVKTD--SQVTSILWSEQYRELVTSHG---------------KQDCSLKMWEY 411 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~~~~-~---~~~~~~~--~~i~~~~~s~~~~~l~~~~g---------------~~d~~i~v~d~ 411 (507)
++.....+.+|.+|++.... . +..+.+. ...+.+.+.++|.+.++... ...|.|.-+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 66543336788888775532 2 2233333 46899999999997776310 01355666665
Q ss_pred CCccEEEEeeccccceeEEEECCCCCEEEEEe-CCCcEEEEecCC
Q psy8285 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAAS-ADETISIWNCFP 455 (507)
Q Consensus 412 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~dg~i~iw~~~~ 455 (507)
. + +..+...-..-+.++|+||+++|+.+. ..+.|..|++..
T Consensus 211 ~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 211 N--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp T--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred C--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 3 2 222322334568999999998877654 568899999874
No 309
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.42 E-value=0.19 Score=53.56 Aligned_cols=266 Identities=11% Similarity=0.087 Sum_probs=144.3
Q ss_pred EEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC------CCeEEEEeCC-CCcEEEEeCCCceeEEEEee-c
Q psy8285 179 LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR------TTDLAVTNTC-TEYIDLWHEQEERLIQKLRT-H 250 (507)
Q Consensus 179 ~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~~-dg~i~iwd~~~~~~~~~~~~-~ 250 (507)
++.+.++.+..+.+..++........ -...|.|+++.|. +++++++ .. |++++|+++.+.+.+....- .
T Consensus 526 vvva~g~~l~~fel~~~~L~~~~~~~--l~~evscl~i~~~~~~~~~s~~~aVg-~~~d~tv~I~sL~~l~~~~~~~L~~ 602 (1158)
T 3ei3_A 526 VVVAVGRALYYLQIHPQELRQISHTE--MEHEVACLDITPLGDSNGLSPLCAIG-LWTDISARILKLPSFELLHKEMLGG 602 (1158)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEEE--CSSCEEEEECCCCSSSTTCCSEEEEE-ETTTTEEEEEETTTCCEEEEEECCS
T ss_pred EEEEECCEEEEEEeeCCceeeecccC--CCCceEEEEeecCCCCcccccEEEEE-ECCCCEEEEEECCCCCeEEEEECCC
Confidence 33334678888877766544333322 3567999999864 3678888 64 99999999987666543321 1
Q ss_pred CccEEEEEe---e-CCEEEEEecCCeEEEEECCC--CCcCc-eeeecCCCceEEEEEcCCCC-EEEEEeCCcEEEEEcCC
Q psy8285 251 MHQVIAMCW---N-GNLLSCGTIGGNILHYDVRT--HSDYP-TAITREGDVVCGLKWSPNGR-YLASGSNNTVKIWDFRQ 322 (507)
Q Consensus 251 ~~~v~~~~~---~-~~~l~~~~~dg~i~i~d~~~--~~~~~-~~~~~~~~~v~~~~~~~~~~-~l~~~~d~~i~i~d~~~ 322 (507)
.....++.. . ..+|..|-.||.+..+.++. +.... +...-...++.-..+...+. .+.+.++....+|.-+.
T Consensus 603 ~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~ 682 (1158)
T 3ei3_A 603 EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH 682 (1158)
T ss_dssp SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSS
T ss_pred CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCC
Confidence 223344444 2 45788999999987666543 22111 11111233444344444333 34444455555554332
Q ss_pred CCCCCCeeeecCCCCCee-EEEEccCC--CcEEEEEccCCCCeEEEEeCCCCC--eeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 323 LDAKRPQVNNQCHLSAVK-AIAWCPWE--PTLLATGGGICDQTVRLWNSMNGK--EKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~-~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
+...... ....+. ...|+... .-+++ .. ++.++|..+.+.+ .++.+.-...+..++++|+.+.+++
T Consensus 683 ----~l~~s~l-~~~~v~~~~~F~se~~~~g~v~-~~---~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v 753 (1158)
T 3ei3_A 683 ----KLVFSNV-NLKEVNYMCPLNSDGYPDSLAL-AN---NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGV 753 (1158)
T ss_dssp ----SEEEEEB-SSSCCCEEEEECCSSSTTEEEE-EC---SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEE
T ss_pred ----ceEEecc-ChHHhceEeccCcccCCCcEEE-Ec---CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEE
Confidence 1111111 112232 33343221 12333 33 5568888775433 3344555567888888888776655
Q ss_pred Eecc-----------------------------------------------CCCeEEEEeCCCccEEEEeecc-ccceeE
Q psy8285 398 SHGK-----------------------------------------------QDCSLKMWEYPRLHLIEELKIH-QERILS 429 (507)
Q Consensus 398 ~~g~-----------------------------------------------~d~~i~v~d~~~~~~~~~~~~~-~~~i~~ 429 (507)
.+.. .-+.|++.|-.+.+.+..+.-. ...+.+
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~s 833 (1158)
T 3ei3_A 754 LSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALS 833 (1158)
T ss_dssp EEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEE
T ss_pred EEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEE
Confidence 3211 0134777777777766554321 223444
Q ss_pred E---EECCC-CCEEEEEe----------CCCcEEEEecCCC
Q psy8285 430 A---VLSPD-QTCVAAAS----------ADETISIWNCFPR 456 (507)
Q Consensus 430 ~---~~s~~-~~~l~s~~----------~dg~i~iw~~~~~ 456 (507)
+ .|..+ ..+|+.|+ ..|.|++|++...
T Consensus 834 v~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~ 874 (1158)
T 3ei3_A 834 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG 874 (1158)
T ss_dssp EEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT
T ss_pred EEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC
Confidence 3 34333 46888776 3488999999743
No 310
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.37 E-value=0.024 Score=51.93 Aligned_cols=143 Identities=15% Similarity=0.113 Sum_probs=96.5
Q ss_pred EEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCC----CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe-
Q psy8285 299 KWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCH----LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE- 373 (507)
Q Consensus 299 ~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~- 373 (507)
....+|..++.+.++.||.-++... ...+.+... -..+..+..+|+|. +++..+ +..|.|..+..+..
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~---~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g---~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTD---SLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN---DNEIFVMEVPWGYSN 99 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTC---SSCEEEECTTTCCCCTTCEEEECTTSS-EEEEEC---SSEEEEEECCTTCSC
T ss_pred EEEcCCCEEEEEECCEEEEEECCCC---CcceEEecCcccccCceeEEEECCCCC-EEEEec---CCeEEEEEecCcccc
Confidence 3456788888888899999888854 333333322 23678899999995 555554 78999999874321
Q ss_pred -----------eeeeec-------CCCeEEEEECCCC---CeEEEEeccCCCeEEEEeCCCc--cEEEEee---------
Q psy8285 374 -----------KCHVKT-------DSQVTSILWSEQY---RELVTSHGKQDCSLKMWEYPRL--HLIEELK--------- 421 (507)
Q Consensus 374 -----------~~~~~~-------~~~i~~~~~s~~~---~~l~~~~g~~d~~i~v~d~~~~--~~~~~~~--------- 421 (507)
.+.+.. ..+|..+.|+|-+ ..|++ -..|+.|++||+... ++. .+.
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV--LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d 176 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV--LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLD 176 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE--EETTSCEEEEETTCTTSCCE-EESCCCSEEESC
T ss_pred CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE--EecCCEEEEEEcccCCCCCc-chhccccccCCC
Confidence 112221 3579999999964 56777 457999999999752 222 222
Q ss_pred ccccceeEEEECCCCCEEEEEe--CCCcEEEE
Q psy8285 422 IHQERILSAVLSPDQTCVAAAS--ADETISIW 451 (507)
Q Consensus 422 ~~~~~i~~~~~s~~~~~l~s~~--~dg~i~iw 451 (507)
.....|.+++|.+++-.|...+ ..|.|+-.
T Consensus 177 ~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 177 ARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 1225688999999888777755 67776543
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.34 E-value=0.085 Score=47.83 Aligned_cols=179 Identities=14% Similarity=0.124 Sum_probs=104.2
Q ss_pred cCCeEEEEECCCCCcCcee--eec-----CCCceEEEEEcC--CCC-EEEEEe----CCcEEEEEcCCCCC-CCCeeeec
Q psy8285 269 IGGNILHYDVRTHSDYPTA--ITR-----EGDVVCGLKWSP--NGR-YLASGS----NNTVKIWDFRQLDA-KRPQVNNQ 333 (507)
Q Consensus 269 ~dg~i~i~d~~~~~~~~~~--~~~-----~~~~v~~~~~~~--~~~-~l~~~~----d~~i~i~d~~~~~~-~~~~~~~~ 333 (507)
.+|.|.++|.++....... +.+ ..-....+.+.+ +++ +|+++. +..|.+|++..... ...+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998743211112 222 123567777765 454 455543 26788888775421 11222333
Q ss_pred CC-CCCeeEEEEccCCCcEEEEEcc---------------CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 334 CH-LSAVKAIAWCPWEPTLLATGGG---------------ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 334 ~~-~~~v~~~~~~~~~~~~~~~~~~---------------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
+. -...+.+.+.++|. ++++... ...+.|..+|. ++.......-...+.++|+||++.|++
T Consensus 161 g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEE
Confidence 22 24578999999984 4444320 01245666664 333333333367899999999999888
Q ss_pred EeccCCCeEEEEeCCC-ccE--EEEeeccccceeEEEECC-CCCEEEEEeCC-CcEEEEe
Q psy8285 398 SHGKQDCSLKMWEYPR-LHL--IEELKIHQERILSAVLSP-DQTCVAAASAD-ETISIWN 452 (507)
Q Consensus 398 ~~g~~d~~i~v~d~~~-~~~--~~~~~~~~~~i~~~~~s~-~~~~l~s~~~d-g~i~iw~ 452 (507)
+ -+..+.|..|++.. ++. ...+ ...+..-.+++.+ +|++.+++..+ +.|..|+
T Consensus 238 a-dt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 238 A-ELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp E-EGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred E-eCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 6 45678999999863 322 2233 2245567789999 59888766644 3344443
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.28 E-value=0.068 Score=49.04 Aligned_cols=144 Identities=16% Similarity=0.160 Sum_probs=95.4
Q ss_pred eCCEEEEEecCCeEEEEECCCCCcCceeeecC----CCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCC-CC-------
Q psy8285 260 NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE----GDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDA-KR------- 327 (507)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~-~~------- 327 (507)
++..++.+- ++.||.-++.... ..+.+... -..+..+..+|+|++||..++..|.|..+..+.. ..
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 566665555 4677877777443 33333332 2357889999999999999999999999874311 11
Q ss_pred -CeeeecC------CCCCeeEEEEccCCC---cEEEEEccCCCCeEEEEeCCCC--Ceeeeee-------cC---CCeEE
Q psy8285 328 -PQVNNQC------HLSAVKAIAWCPWEP---TLLATGGGICDQTVRLWNSMNG--KEKCHVK-------TD---SQVTS 385 (507)
Q Consensus 328 -~~~~~~~------~~~~v~~~~~~~~~~---~~~~~~~~~~d~~i~i~d~~~~--~~~~~~~-------~~---~~i~~ 385 (507)
....+.- ...+|..+.|+|-+. .+++..+ |+.|++||+... ++. .+. .. ..+.+
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLts---D~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKE---DDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEET---TSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEec---CCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 0111111 256799999999653 5666665 999999999763 222 221 11 46899
Q ss_pred EEECCCCCeEEEEeccCCCeEEEE
Q psy8285 386 ILWSEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 386 ~~~s~~~~~l~~~~g~~d~~i~v~ 409 (507)
++|.+++-.|.+.+.++.|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 999998887777434577888765
No 313
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.27 E-value=0.09 Score=46.67 Aligned_cols=212 Identities=8% Similarity=-0.011 Sum_probs=117.3
Q ss_pred cCCCeEEEEeC-CCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecC--------------CeEEEEECCCCC
Q psy8285 218 PRTTDLAVTNT-CTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIG--------------GNILHYDVRTHS 282 (507)
Q Consensus 218 ~~~~~l~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~ 282 (507)
.++..++.... .++.|...+..... ...+... .+..+..+++.|+.+... ..|+..++...+
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~ 99 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG 99 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc
Confidence 45556665522 24455555543322 2333221 234444567777666543 357777777654
Q ss_pred cCceeeecCCCceEEEEEcCCCCEEEEEe---C--CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEcc
Q psy8285 283 DYPTAITREGDVVCGLKWSPNGRYLASGS---N--NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG 357 (507)
Q Consensus 283 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 357 (507)
...+.... +..|+++++.|+... + ..|+..++... ....+..+.. ..++|+++.++.+..+
T Consensus 100 --~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs----~~~~lt~~~~----~~~~~~g~~iy~t~~g 165 (302)
T 3s25_A 100 --STVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE----EKKKIKNHYL----FTCNTSDRYFYYNNPK 165 (302)
T ss_dssp --CEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSC----CCEEEESSCC----CCSEEETTEEEEECTT
T ss_pred --ceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCC----CeEEEeCCCc----eEeeEECCEEEEEeCC
Confidence 33333222 236778888888765 3 45555555532 2333333322 4567888888887654
Q ss_pred CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC
Q psy8285 358 ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT 437 (507)
Q Consensus 358 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 437 (507)
...|...++..+.....+.. ... ..+.|++.+|+.+.......|..-++..... ..+.. ..+ ..|+|++.
T Consensus 166 --~~~Iy~~~l~g~~~~~l~~~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~ 235 (302)
T 3s25_A 166 --NGQLYRYDTASQSEALFYDC--NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGS 235 (302)
T ss_dssp --TCCEEEEETTTTEEEEEECS--CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETT
T ss_pred --CceEEEEECCCCCEEEEeCC--Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCC
Confidence 78899999877655444332 222 2356999999885322234677777765543 33332 223 34788888
Q ss_pred EEEEEeC--CCcEEEEecCCC
Q psy8285 438 CVAAASA--DETISIWNCFPR 456 (507)
Q Consensus 438 ~l~s~~~--dg~i~iw~~~~~ 456 (507)
+|+-++. .+.|..-++...
T Consensus 236 ~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 236 LIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEEEECSSSCEEEEEETTSC
T ss_pred EEEEEECCCCcEEEEEECCCC
Confidence 8876543 344555555443
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.24 E-value=0.062 Score=47.92 Aligned_cols=217 Identities=14% Similarity=0.062 Sum_probs=111.7
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC----CcEEEEeCCCceeEEEE--eecCccEEEE
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT----EYIDLWHEQEERLIQKL--RTHMHQVIAM 257 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d----g~i~iwd~~~~~~~~~~--~~~~~~v~~~ 257 (507)
...+.+||..+.+...+..++. .......+.+ ++..++.+ +.+ ..+.+||..+.+-...- .........+
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~lyv~G-G~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 98 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFE-KRRDAACVFW--DNVVYILG-GSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC 98 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSC-CCBSCEEEEE--TTEEEEEC-CBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE
T ss_pred CceEEEecCCCCCEecCCCCCc-ccceeEEEEE--CCEEEEEe-CCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE
Confidence 4689999999988776655543 2233333333 45555555 443 57889999887543322 2122223334
Q ss_pred EeeCCEEEEEecC------CeEEEEECCCCCcCce-eeecCCCceEEEEEcCCCCEEEEEe-C---------CcEEEEEc
Q psy8285 258 CWNGNLLSCGTIG------GNILHYDVRTHSDYPT-AITREGDVVCGLKWSPNGRYLASGS-N---------NTVKIWDF 320 (507)
Q Consensus 258 ~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-d---------~~i~i~d~ 320 (507)
..++++++.|+.+ ..+.+||..+..-... .+.........+. -++++++.|+ + ..+.+||+
T Consensus 99 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 176 (306)
T 3ii7_A 99 AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDP 176 (306)
T ss_dssp EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEET
T ss_pred EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCC
Confidence 4578888888765 4588999887541110 1111111112222 2667777665 2 34888998
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCCCCeee--eeecC-CCeEEEEECCCCCe
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGKEKC--HVKTD-SQVTSILWSEQYRE 394 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~--~~~~~-~~i~~~~~s~~~~~ 394 (507)
.+..- ..+..+.........+.+ ++ .+++.++... -..+.+||+.+.+-.. .+... .....+.+ +++.
T Consensus 177 ~~~~W-~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 250 (306)
T 3ii7_A 177 ATETW-TELCPMIEARKNHGLVFV--KD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIV 250 (306)
T ss_dssp TTTEE-EEECCCSSCCBSCEEEEE--TT-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEE
T ss_pred CCCeE-EECCCccchhhcceEEEE--CC-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEE
Confidence 76511 111111111111122222 33 6777665211 1468899988764222 12211 12233333 5555
Q ss_pred EEEEeccCC-----CeEEEEeCCCc
Q psy8285 395 LVTSHGKQD-----CSLKMWEYPRL 414 (507)
Q Consensus 395 l~~~~g~~d-----~~i~v~d~~~~ 414 (507)
++. |+.+ ..+.+||..+.
T Consensus 251 ~v~--GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 251 YVL--AGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEE--ECBCSSSBCCEEEEEETTTT
T ss_pred EEE--eCcCCCeeeeeEEEEcCCCC
Confidence 555 4432 46888888764
No 315
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.24 E-value=0.097 Score=46.48 Aligned_cols=199 Identities=9% Similarity=0.070 Sum_probs=119.1
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeec-------CccEEEEEe---e--CCEEEEEec-----
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH-------MHQVIAMCW---N--GNLLSCGTI----- 269 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~---~--~~~l~~~~~----- 269 (507)
..-...++.|.+....+.++.-..++|..||...+......... ...+..+.| | ++++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 44455688998877777777458999999998755433332111 113578888 4 445554432
Q ss_pred --------CCeEEEEECC---CCCcCcee-eec-----------CCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCC
Q psy8285 270 --------GGNILHYDVR---THSDYPTA-ITR-----------EGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLD 324 (507)
Q Consensus 270 --------dg~i~i~d~~---~~~~~~~~-~~~-----------~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~ 324 (507)
+..|..||+. +++..... +.. .......++..++|+..++++ . +.|...+....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~- 169 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK- 169 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-
Confidence 5779999998 55522111 111 113478999999999998887 5 66666665432
Q ss_pred CCCCeeee------cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee-eeee--c---C-CCeEEE-EECC
Q psy8285 325 AKRPQVNN------QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK-CHVK--T---D-SQVTSI-LWSE 390 (507)
Q Consensus 325 ~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-~~~~--~---~-~~i~~~-~~s~ 390 (507)
.+..+ .......+.|+++|++..|++..+ .+.+.-+|+.+.... .... + . .....+ ..-.
T Consensus 170 ---~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~---~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~ 243 (334)
T 2p9w_A 170 ---TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG---PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV 243 (334)
T ss_dssp ---CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS---SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred ---EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC---CCeEEEEcCCCCcceeecccccCCcccccCccccccccc
Confidence 22211 112234679999999976666654 899999998843220 1111 1 1 223443 3345
Q ss_pred CCCeEEEEeccCCCeEEEEeCCC
Q psy8285 391 QYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
+|+.++++ ....+.+.+.+...
T Consensus 244 ~G~vllV~-~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 244 GNESVLVG-ARAPYAISFRSWDN 265 (334)
T ss_dssp TTEEEEEE-EETTEEEEEECSST
T ss_pred CCEEEEEE-cCCCCEEEEECCCC
Confidence 77776664 33456666666544
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.23 E-value=0.021 Score=50.88 Aligned_cols=216 Identities=12% Similarity=0.055 Sum_probs=109.4
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC-----CcEEEEeCCCce---eEEE--EeecCccE
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT-----EYIDLWHEQEER---LIQK--LRTHMHQV 254 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~~~---~~~~--~~~~~~~v 254 (507)
..+.+||+.+.+...+..++. .......+. .++..++.+ +.+ ..+.+||..+.+ -... +.......
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~--~~~~l~v~G-G~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~ 106 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITR-KRRYVASVS--LHDRIYVIG-GYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA 106 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSS-CCBSCEEEE--ETTEEEEEC-CBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC
T ss_pred eEEEEEcCCCCeEEeCCCCCh-hhccccEEE--ECCEEEEEc-CCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce
Confidence 478999998887766554433 222222332 245556666 433 468999988765 2222 22222223
Q ss_pred EEEEeeCCEEEEEecC-----CeEEEEECCCCCcCc-eeeecCCCceEEEEEcCCCCEEEEEe-C-----CcEEEEEcCC
Q psy8285 255 IAMCWNGNLLSCGTIG-----GNILHYDVRTHSDYP-TAITREGDVVCGLKWSPNGRYLASGS-N-----NTVKIWDFRQ 322 (507)
Q Consensus 255 ~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~ 322 (507)
..+..++++++.|+.+ ..+.+||+.+.+-.. ..+.........+.+ ++++++.|+ + ..+.+||+.+
T Consensus 107 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 107 GATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred eEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 3344477777777754 358889987754111 111111111122222 667777765 2 4688999876
Q ss_pred CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCCCCeeee--eecC-CCeEEEEECCCCCeEE
Q psy8285 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGKEKCH--VKTD-SQVTSILWSEQYRELV 396 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~--~~~~-~~i~~~~~s~~~~~l~ 396 (507)
..- ..+..+.........+.+ + ..+++.++... ...+.+||+.+.+-... +... .....+.+ +++.++
T Consensus 185 ~~W-~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v 258 (301)
T 2vpj_A 185 GHW-TNVTPMATKRSGAGVALL--N-DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYA 258 (301)
T ss_dssp TEE-EEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred CcE-EeCCCCCcccccceEEEE--C-CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEE
Confidence 411 111111111111122222 3 36777765311 24689999987653322 1111 11222322 555555
Q ss_pred EEeccCC-----CeEEEEeCCCc
Q psy8285 397 TSHGKQD-----CSLKMWEYPRL 414 (507)
Q Consensus 397 ~~~g~~d-----~~i~v~d~~~~ 414 (507)
. |+.+ ..+.+||..+.
T Consensus 259 ~--GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 259 I--AGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp E--CCBCSSSBEEEEEEEETTTT
T ss_pred E--cCcCCCcccccEEEEcCCCC
Confidence 5 4443 46788887654
No 317
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.21 E-value=0.065 Score=44.28 Aligned_cols=176 Identities=9% Similarity=-0.001 Sum_probs=98.9
Q ss_pred CEEEEEecCCeEEEEECCCCCc--C--ceeeecC--CCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCC
Q psy8285 262 NLLSCGTIGGNILHYDVRTHSD--Y--PTAITRE--GDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCH 335 (507)
Q Consensus 262 ~~l~~~~~dg~i~i~d~~~~~~--~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 335 (507)
.+|+....| +++.=....... - .....+. =..+..++|+|+|.+.++ .++.++-.+..+. ... .+.+.
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~---~~~-~W~~s 78 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTH---DND-NWMGR 78 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCS---TTC-CHHHH
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCC---Ccc-ccccc
Confidence 345566666 555544443321 0 1111122 236779999999998777 7687666665432 111 11111
Q ss_pred CCC--------eeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee------eeec-C-CCeEEEEECCCCCeEEEEe
Q psy8285 336 LSA--------VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC------HVKT-D-SQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 336 ~~~--------v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~------~~~~-~-~~i~~~~~s~~~~~l~~~~ 399 (507)
... ..++.|.|+| .|.++ + |+.|+-++-.+...-. .+.. . ..+..+.+.|+|...++
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G-~LYav-~---dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav-- 151 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNG-YLYAV-S---KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV-- 151 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTS-CEEEE-E---TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE--
T ss_pred ccEecccccccceEEEECCCC-CEEEe-C---CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE--
Confidence 122 3789999998 56555 4 8999888764322111 1111 1 46899999999998887
Q ss_pred ccCCCeEEEEeCCCcc------EEEEee-ccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 400 GKQDCSLKMWEYPRLH------LIEELK-IHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 400 g~~d~~i~v~d~~~~~------~~~~~~-~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
. |+.++-....+.. ....+- ..-...+.+.|.+++...+.. +| ++|...+.
T Consensus 152 ~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 152 H--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp E--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESCC
T ss_pred e--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCCc
Confidence 4 7776544333221 111111 222344557799998877655 66 56665443
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.19 E-value=0.031 Score=49.79 Aligned_cols=215 Identities=11% Similarity=0.075 Sum_probs=105.6
Q ss_pred CcEEEEeCCCceeEEE--EeecCccEEEEEeeCCEEEEEecC-----CeEEEEECCCCCcC-ceee---ecCCCceEEEE
Q psy8285 231 EYIDLWHEQEERLIQK--LRTHMHQVIAMCWNGNLLSCGTIG-----GNILHYDVRTHSDY-PTAI---TREGDVVCGLK 299 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-~~~~---~~~~~~v~~~~ 299 (507)
..+.+||..+.+-... +.........+..++.+++.|+.+ ..+.+||+.+.... ...+ .........+.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 3688899887653322 111122233344577788888765 46889998875410 1111 11111122222
Q ss_pred EcCCCCEEEEEe-C-----CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCC
Q psy8285 300 WSPNGRYLASGS-N-----NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMN 370 (507)
Q Consensus 300 ~~~~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~ 370 (507)
+ ++++++.|+ + ..+.+||+.+..- ..+..+.........+.+ ++ .+++.++... -..+.+||+.+
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQW-SMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTTEE-EEEEECSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTT
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCCeE-EECCCCCCCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeCCC
Confidence 2 567777765 2 3688999876411 111111111111122222 34 6777665311 24688999887
Q ss_pred CCeeee--eecCC-CeEEEEECCCCCeEEEEeccCC-----CeEEEEeCCCccE--EEEeeccccceeEEEECCCCCEEE
Q psy8285 371 GKEKCH--VKTDS-QVTSILWSEQYRELVTSHGKQD-----CSLKMWEYPRLHL--IEELKIHQERILSAVLSPDQTCVA 440 (507)
Q Consensus 371 ~~~~~~--~~~~~-~i~~~~~s~~~~~l~~~~g~~d-----~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~ 440 (507)
.+-... +.... ....+.+ +++.++. |+.+ ..+.+||..+.+- +..+.........+. .+++.++
T Consensus 185 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~--GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v 258 (301)
T 2vpj_A 185 GHWTNVTPMATKRSGAGVALL--NDHIYVV--GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYA 258 (301)
T ss_dssp TEEEEECCCSSCCBSCEEEEE--TTEEEEE--CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred CcEEeCCCCCcccccceEEEE--CCEEEEE--eCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEE
Confidence 653322 11111 1222222 4555555 5443 4689999887542 222221111112222 2666777
Q ss_pred EEeCC-----CcEEEEecCCCC
Q psy8285 441 AASAD-----ETISIWNCFPRD 457 (507)
Q Consensus 441 s~~~d-----g~i~iw~~~~~~ 457 (507)
.|+.+ ..+.+||+.+.+
T Consensus 259 ~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 259 IAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCBCSSSBEEEEEEEETTTTE
T ss_pred EcCcCCCcccccEEEEcCCCCe
Confidence 77655 346777776543
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.13 E-value=0.066 Score=47.63 Aligned_cols=216 Identities=15% Similarity=0.159 Sum_probs=107.5
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC-----CcEEEEeCCCceeEEEE--eecCccEEEE
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT-----EYIDLWHEQEERLIQKL--RTHMHQVIAM 257 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~~~~~~~~--~~~~~~v~~~ 257 (507)
..+..||+.+.+...+..++. ....-..+.+ ++..++.+ +.+ ..+.+||..+.+-...- .........+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~lyv~G-G~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 105 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPS-RRCRAGMVYM--AGLVFAVG-GFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA 105 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEES-CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred CcEEEEcCcCCcEeEcccCCc-ccccceEEEE--CCEEEEEe-CcCCCccccceEEECCCCCceeeCCCCCccccceEEE
Confidence 468899998887766655443 2222222222 45555555 433 36889998876533321 1122223344
Q ss_pred EeeCCEEEEEecCC-----eEEEEECCCCCcCce-eeecCCCceEEEEEcCCCCEEEEEe-C-------CcEEEEEcCCC
Q psy8285 258 CWNGNLLSCGTIGG-----NILHYDVRTHSDYPT-AITREGDVVCGLKWSPNGRYLASGS-N-------NTVKIWDFRQL 323 (507)
Q Consensus 258 ~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-d-------~~i~i~d~~~~ 323 (507)
.+++.+++.|+.++ .+.+||+.+.+-... .+........ ++. -++++++.|+ + ..+.+||+.+.
T Consensus 106 ~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 106 VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVG-VGV-VGGLLYAVGGYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp EETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCE-EEE-ETTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred EECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCce-EEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence 45788888887664 577888876541110 1111111112 222 2566777665 2 34888998764
Q ss_pred CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCCCCeeee--eecC-CCeEEEEECCCCCeEEE
Q psy8285 324 DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGKEKCH--VKTD-SQVTSILWSEQYRELVT 397 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~--~~~~-~~i~~~~~s~~~~~l~~ 397 (507)
.- ..+..+.........+.+ + ..+++.++... ...+.+||+.+.+-... +... .....+.+ +++.++.
T Consensus 184 ~W-~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~ 257 (302)
T 2xn4_A 184 EW-TYIAEMSTRRSGAGVGVL--N-NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVV 257 (302)
T ss_dssp EE-EEECCCSSCCBSCEEEEE--T-TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE
T ss_pred cE-EECCCCccccccccEEEE--C-CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEE
Confidence 11 111111111111122222 3 36777765311 24689999887653222 1111 11122222 4555555
Q ss_pred EeccCC-----CeEEEEeCCCc
Q psy8285 398 SHGKQD-----CSLKMWEYPRL 414 (507)
Q Consensus 398 ~~g~~d-----~~i~v~d~~~~ 414 (507)
|+.+ ..+.+||..+.
T Consensus 258 --GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 258 --GGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp --CCBCSSSBCCCEEEEETTTT
T ss_pred --CCcCCCcccccEEEEcCCCC
Confidence 4443 34788887654
No 320
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.03 E-value=0.19 Score=45.86 Aligned_cols=221 Identities=12% Similarity=0.082 Sum_probs=121.0
Q ss_pred eeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecC--CCCCCceEEEEEccC---CCeEEEEeCC---C----CcEEE
Q psy8285 169 SGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYP--TYDNAYISCVAWKPR---TTDLAVTNTC---T----EYIDL 235 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~---~~~l~~~~~~---d----g~i~i 235 (507)
..|+|.|++ ++++..++.|++++. +++ ..+..++ .........|+++|+ +..|.++.+. + ..|..
T Consensus 32 ~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r 109 (354)
T 3a9g_A 32 WSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIR 109 (354)
T ss_dssp EEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEE
T ss_pred eEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEE
Confidence 468999988 666677899999974 555 3333221 103456899999998 5666665121 2 56777
Q ss_pred EeCCCc-------eeE-EEEee-cCccEEEEEe--eCCEEEEEec-------------CCeEEEEECCCCC-------cC
Q psy8285 236 WHEQEE-------RLI-QKLRT-HMHQVIAMCW--NGNLLSCGTI-------------GGNILHYDVRTHS-------DY 284 (507)
Q Consensus 236 wd~~~~-------~~~-~~~~~-~~~~v~~~~~--~~~~l~~~~~-------------dg~i~i~d~~~~~-------~~ 284 (507)
|+.... +.+ ..+.. .......+.| ++.+.++.+. .|.|..++....- ..
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~ 189 (354)
T 3a9g_A 110 GRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNS 189 (354)
T ss_dssp EEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTC
T ss_pred EEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCC
Confidence 876643 111 11221 1112345677 6766665432 2456666654320 01
Q ss_pred ceeeecCCCceEEEEEcC-CCCEEEEEeC----CcEEEEEcCCCC---------------CCCCeeeecCCCCCeeEEEE
Q psy8285 285 PTAITREGDVVCGLKWSP-NGRYLASGSN----NTVKIWDFRQLD---------------AKRPQVNNQCHLSAVKAIAW 344 (507)
Q Consensus 285 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~d----~~i~i~d~~~~~---------------~~~~~~~~~~~~~~v~~~~~ 344 (507)
.....++. ....++|+| +++++++-.. ..|.+.. .+. ...++..+.........++|
T Consensus 190 ~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~ 266 (354)
T 3a9g_A 190 PIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASF 266 (354)
T ss_dssp CEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEE
T ss_pred cEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEE
Confidence 12223333 345799999 6666555432 2244332 221 01233333112345778888
Q ss_pred c-------cCCCcEEEEEccCCCCeEEEEeCCCC-Cee--eeee-c-CCCeEEEEECCCCCeEEE
Q psy8285 345 C-------PWEPTLLATGGGICDQTVRLWNSMNG-KEK--CHVK-T-DSQVTSILWSEQYRELVT 397 (507)
Q Consensus 345 ~-------~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~--~~~~-~-~~~i~~~~~s~~~~~l~~ 397 (507)
. .++ .++++.-. .+.|...++... +.. ..+. . ...+..+++.|||...++
T Consensus 267 y~g~~fp~~~G-~l~v~~~~--~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~ 328 (354)
T 3a9g_A 267 VHGDMFPGLRG-WLLIACLR--GSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIS 328 (354)
T ss_dssp CCSSSCGGGTT-EEEEEETT--TTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEE
T ss_pred ECCCCCcccCC-cEEEEEcC--CCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEE
Confidence 3 345 56655443 678888888753 322 2222 2 257899999999976665
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.02 E-value=0.091 Score=46.82 Aligned_cols=216 Identities=9% Similarity=0.106 Sum_probs=107.7
Q ss_pred CCcEEEEeCCCceeEEE--EeecCccEEEEEeeCCEEEEEecC----CeEEEEECCCCCcCce-eeecCCCceEEEEEcC
Q psy8285 230 TEYIDLWHEQEERLIQK--LRTHMHQVIAMCWNGNLLSCGTIG----GNILHYDVRTHSDYPT-AITREGDVVCGLKWSP 302 (507)
Q Consensus 230 dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~ 302 (507)
...+.+||..+.+-... +.........+..++.+++.|+.+ ..+.+||+.+.+-... .+.........+.+
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 100 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-- 100 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--
Confidence 45789999888654322 112222233444577888888765 5688999887641111 11111111122222
Q ss_pred CCCEEEEEe-C------CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC-------CCeEEEEeC
Q psy8285 303 NGRYLASGS-N------NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC-------DQTVRLWNS 368 (507)
Q Consensus 303 ~~~~l~~~~-d------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------d~~i~i~d~ 368 (507)
++++++.|+ + ..+.+||+.+..- ..+..+.........+.+ ++ .+++.++... -..+.+||+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~~~yd~ 176 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESW-HTKPSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNVSGRVLNSCEVYDP 176 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TT-EEEEECCEESCTTTCEECCCEEEEET
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCce-EeCCCCcCCcceeEEEEE--CC-EEEEECCCCCCCCcccccceEEEeCC
Confidence 567777765 3 4688999876511 011111111111112222 34 6666664211 245889998
Q ss_pred CCCCeeee--eecC-CCeEEEEECCCCCeEEEEeccCC-----CeEEEEeCCCcc--EEEEeeccccceeEEEECCCCCE
Q psy8285 369 MNGKEKCH--VKTD-SQVTSILWSEQYRELVTSHGKQD-----CSLKMWEYPRLH--LIEELKIHQERILSAVLSPDQTC 438 (507)
Q Consensus 369 ~~~~~~~~--~~~~-~~i~~~~~s~~~~~l~~~~g~~d-----~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~ 438 (507)
.+.+-... +... .....+.+ +++.++. |+.+ ..+.+||..+.+ .+..+.........+.+ +++.
T Consensus 177 ~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~--GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 250 (306)
T 3ii7_A 177 ATETWTELCPMIEARKNHGLVFV--KDKIFAV--GGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIV 250 (306)
T ss_dssp TTTEEEEECCCSSCCBSCEEEEE--TTEEEEE--CCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEE
T ss_pred CCCeEEECCCccchhhcceEEEE--CCEEEEE--eCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEE
Confidence 87643222 1111 11222222 4555555 4433 468999987653 22222221222222333 6677
Q ss_pred EEEEeCC-----CcEEEEecCCCC
Q psy8285 439 VAAASAD-----ETISIWNCFPRD 457 (507)
Q Consensus 439 l~s~~~d-----g~i~iw~~~~~~ 457 (507)
++.|+.+ ..+.+||+.+.+
T Consensus 251 ~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 251 YVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEeCcCCCeeeeeEEEEcCCCCe
Confidence 7777744 457788877654
No 322
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.99 E-value=0.17 Score=44.66 Aligned_cols=195 Identities=11% Similarity=0.115 Sum_probs=120.0
Q ss_pred CCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-eeEEEEeecC
Q psy8285 174 GYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-RLIQKLRTHM 251 (507)
Q Consensus 174 s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-~~~~~~~~~~ 251 (507)
+|.. ++|.-....++++|+++.+..+...+ ..+|.-=.|-.+. .|+.. .+..|+-|++... .+.+.+..|.
T Consensus 75 nP~~~ViALrag~~LQiFnletK~klks~~~----~e~VvfWkWis~~-~L~lV--T~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 75 NPASKVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLN-TVALV--TDNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp CSSSSEEEEEETTEEEEEETTTTEEEEEEEC----SSCEEEEEECSSS-EEEEE--ESSEEEEEESSTTCCCEEEEECCG
T ss_pred CCCccEEEEecCCeEEEechHHhhhhcceec----CCccEEEEecCCC-eEEEE--cCCcEEEEcccCCCCCceeeecch
Confidence 4544 77776789999999999988888885 3578888887655 44444 3778999998743 4555555433
Q ss_pred ----ccEEEEEe--eCCEEEEEe-------cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC---CCEEEEEe---C
Q psy8285 252 ----HQVIAMCW--NGNLLSCGT-------IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN---GRYLASGS---N 312 (507)
Q Consensus 252 ----~~v~~~~~--~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~---d 312 (507)
..|..... +.++++..+ -.|.+.+|..+.. ..+.+.+|......+.+..+ .++++.+. .
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT--EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc--ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 23333333 456554433 1367889998864 35667777554433333211 12445444 2
Q ss_pred -CcEEEEEcCCC-CCCCCee-----eec---CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 313 -NTVKIWDFRQL-DAKRPQV-----NNQ---CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 313 -~~i~i~d~~~~-~~~~~~~-----~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
+.+++.++... ....+.. .+. ...+-..++..++.-..+++... -|.+++||+.++.++..-+-.
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK---~G~ihlyDleTgt~i~~nrIS 300 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---YGYIHLYDLETGTCIYMNRIS 300 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET---TSEEEEEETTTCCEEEEEECC
T ss_pred CcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC---CcEEEEEEcccCcEEEEeccC
Confidence 68999998543 1111110 011 11233456777776655665554 899999999999998766544
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.88 E-value=0.12 Score=46.36 Aligned_cols=180 Identities=8% Similarity=0.014 Sum_probs=90.7
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC-----C-C----CcEEEEeCCCceeEEE--EeecCc
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT-----C-T----EYIDLWHEQEERLIQK--LRTHMH 252 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~-d----g~i~iwd~~~~~~~~~--~~~~~~ 252 (507)
..+..||+.+++... ..++. ............++..++.+|. . . ..+.+||..+.+-... +.....
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSS-QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCC-CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CceEEECCCCCeEec-CCCCC-CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 689999999988754 44432 2223333333456777777741 1 1 1277889887654221 111111
Q ss_pred cEEEEEeeCCEEEEEecC--------CeEEEEECCCCCcC-ceeeecCCCceEEEEEcCCCCEEEEEeC-------CcEE
Q psy8285 253 QVIAMCWNGNLLSCGTIG--------GNILHYDVRTHSDY-PTAITREGDVVCGLKWSPNGRYLASGSN-------NTVK 316 (507)
Q Consensus 253 ~v~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~d-------~~i~ 316 (507)
....+..++.+++.|+.+ ..+.+||..+.+-. ...+........ ++. .++++++.|+. ..+.
T Consensus 91 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~ 168 (315)
T 4asc_A 91 LFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHT-VLS-HMDLVYVIGGKGSDRKCLNKMC 168 (315)
T ss_dssp SCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEE-ETTEEEEECCBCTTSCBCCCEE
T ss_pred ceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccccee-EEE-ECCEEEEEeCCCCCCcccceEE
Confidence 122333477777777743 35889998875311 111111111112 222 35667676652 4689
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC---CeEEEEeCCCCC
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD---QTVRLWNSMNGK 372 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~ 372 (507)
+||+.+..- ..+..+.........+.+ ++ .+++.++...+ ..+.+||+.+.+
T Consensus 169 ~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 169 VYDPKKFEW-KELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEETTTTEE-EECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEeCCCCeE-EECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCCCe
Confidence 999876411 011111111111122222 33 67777653111 268889988764
No 324
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.73 E-value=0.13 Score=45.65 Aligned_cols=215 Identities=14% Similarity=0.128 Sum_probs=103.2
Q ss_pred CcEEEEeCCCceeEEE--EeecCccEEEEEeeCCEEEEEecC-----CeEEEEECCCCCcCce-eeecCCCceEEEEEcC
Q psy8285 231 EYIDLWHEQEERLIQK--LRTHMHQVIAMCWNGNLLSCGTIG-----GNILHYDVRTHSDYPT-AITREGDVVCGLKWSP 302 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~ 302 (507)
..+.+||+.+.+-... +......-..+..++.+++.|+.+ ..+.+||..+.+-... .+.........+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-- 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--
Confidence 3588888887653322 111111222334477788887755 3588899876541110 11111111122222
Q ss_pred CCCEEEEEe-C-----CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC-----CCeEEEEeCCCC
Q psy8285 303 NGRYLASGS-N-----NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC-----DQTVRLWNSMNG 371 (507)
Q Consensus 303 ~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----d~~i~i~d~~~~ 371 (507)
++++++.|+ + ..+.+||+.+..- ..+..+.........+.+ ++ .+++.++... -..+.+||+.+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEW-FHVAPMNTRRSSVGVGVV--GG-LLYAVGGYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TT-EEEEECCEETTTTEECCCEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeE-eecCCCCCcccCceEEEE--CC-EEEEEeCCCCCCCccccEEEEEeCCCC
Confidence 567777766 3 3578888876411 111111111111112222 33 6776664211 245889998876
Q ss_pred Ceeee--eecC-CCeEEEEECCCCCeEEEEeccCC-----CeEEEEeCCCccE--EEEeeccccceeEEEECCCCCEEEE
Q psy8285 372 KEKCH--VKTD-SQVTSILWSEQYRELVTSHGKQD-----CSLKMWEYPRLHL--IEELKIHQERILSAVLSPDQTCVAA 441 (507)
Q Consensus 372 ~~~~~--~~~~-~~i~~~~~s~~~~~l~~~~g~~d-----~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~s 441 (507)
+-... +... .....+.+ +++.++. |+.+ ..+.+||..+.+= +..+......-..+. .+++.++.
T Consensus 184 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~--GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~ 257 (302)
T 2xn4_A 184 EWTYIAEMSTRRSGAGVGVL--NNLLYAV--GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVV 257 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TTEEEEE--CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEE
T ss_pred cEEECCCCccccccccEEEE--CCEEEEE--CCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEE
Confidence 53222 2211 11222222 4555555 5443 4689999876532 222221111111222 26667777
Q ss_pred EeCCC-----cEEEEecCCCC
Q psy8285 442 ASADE-----TISIWNCFPRD 457 (507)
Q Consensus 442 ~~~dg-----~i~iw~~~~~~ 457 (507)
|+.++ .+.+||+.+.+
T Consensus 258 GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 258 GGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBCSSSBCCCEEEEETTTTE
T ss_pred CCcCCCcccccEEEEcCCCCe
Confidence 76553 47888877653
No 325
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.73 E-value=0.084 Score=47.15 Aligned_cols=216 Identities=12% Similarity=0.044 Sum_probs=107.7
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC----C-----CcEEEEeCCCceeEEE--EeecCcc
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC----T-----EYIDLWHEQEERLIQK--LRTHMHQ 253 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----d-----g~i~iwd~~~~~~~~~--~~~~~~~ 253 (507)
..+.+||+.+.+...+..++. .......+.+ ++..++.+ +. + ..+.+||..+.+-... +......
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~lyv~G-G~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 114 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQV-PRSGLAGCVV--GGLLYAVG-GRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR 114 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEC-CEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT
T ss_pred ceEEEEcCCCCeEeECCCCCc-ccccceEEEE--CCEEEEEC-CCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc
Confidence 478999998888766654433 2222222222 45555555 43 2 4688999887653322 1112222
Q ss_pred EEEEEeeCCEEEEEecC-----CeEEEEECCCCCcC-ceeeecCCCceEEEEEcCCCCEEEEEe-C-----CcEEEEEcC
Q psy8285 254 VIAMCWNGNLLSCGTIG-----GNILHYDVRTHSDY-PTAITREGDVVCGLKWSPNGRYLASGS-N-----NTVKIWDFR 321 (507)
Q Consensus 254 v~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~ 321 (507)
...+..++++++.|+.+ ..+.+||+.+.+-. ...+.........+.+ ++++++.|+ + ..+.+||+.
T Consensus 115 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 192 (308)
T 1zgk_A 115 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPE 192 (308)
T ss_dssp CEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred cEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCC
Confidence 33344477777777644 35888998765411 1111111111222222 567777765 2 468899987
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCCCCeeee--eecCC-CeEEEEECCCCCeE
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGKEKCH--VKTDS-QVTSILWSEQYREL 395 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~--~~~~~-~i~~~~~s~~~~~l 395 (507)
+..-. .+..+.........+.+ + ..+++.++... -..+.+||+.+.+-... +.... ....+.+ +++.+
T Consensus 193 ~~~W~-~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~ 266 (308)
T 1zgk_A 193 RNEWR-MITAMNTIRSGAGVCVL--H-NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIY 266 (308)
T ss_dssp TTEEE-ECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEE
T ss_pred CCeEe-eCCCCCCccccceEEEE--C-CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEE
Confidence 64110 11111111111222222 3 36777765311 25689999887653221 11111 1222222 45555
Q ss_pred EEEeccCC-----CeEEEEeCCCc
Q psy8285 396 VTSHGKQD-----CSLKMWEYPRL 414 (507)
Q Consensus 396 ~~~~g~~d-----~~i~v~d~~~~ 414 (507)
+. |+.+ ..+.+||..+.
T Consensus 267 v~--GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 267 VL--GGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp EE--CCBCSSCBCCEEEEEETTTT
T ss_pred EE--cCcCCCcccceEEEEcCCCC
Confidence 55 4433 35777887654
No 326
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.66 E-value=0.32 Score=43.12 Aligned_cols=235 Identities=8% Similarity=-0.006 Sum_probs=132.3
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC-------------CcEEEEeCCCceeEEEEeec
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT-------------EYIDLWHEQEERLIQKLRTH 250 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-------------g~i~iwd~~~~~~~~~~~~~ 250 (507)
++.|+..+.......++..- .+--+++++.+|+.+...+ ..|+..++...+... +..
T Consensus 36 ~~~ly~~~~dg~~~~~l~~~--------~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~- 105 (302)
T 3s25_A 36 NGRLYAMNIDGSNIHKLSND--------TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP- 105 (302)
T ss_dssp TTEEEEEETTSCSCEEEEEE--------EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC-
T ss_pred CceEEEEcCCCCCCEEccCC--------ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec-
Confidence 56777777655554444331 2345688999999883332 467777777654333 222
Q ss_pred CccEEEEEeeCCEEEEEe--c--CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC--CcEEEEEcCCCC
Q psy8285 251 MHQVIAMCWNGNLLSCGT--I--GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN--NTVKIWDFRQLD 324 (507)
Q Consensus 251 ~~~v~~~~~~~~~l~~~~--~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~~i~i~d~~~~~ 324 (507)
.....++.+++.|+... . ...|+..++.... ...+..+.. ..++++++.|+-.++ ..|...++...
T Consensus 106 -~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~- 177 (302)
T 3s25_A 106 -DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ- 177 (302)
T ss_dssp -SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT-
T ss_pred -CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC-
Confidence 23345666888888776 2 3456666666433 444444432 456788888887774 77888887654
Q ss_pred CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCC
Q psy8285 325 AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 325 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
. ...+.. +... ..+.|++..++.+... ....|..-++...... .+. ...+ ..|+|+++.|+.+.....+
T Consensus 178 --~-~~~l~~--~~~~-~~~~P~g~~iy~t~~~-~~~~I~~~~ldG~~~~-~Lt-~~~~--~~~~~~g~~Iy~~~~~~~~ 246 (302)
T 3s25_A 178 --S-EALFYD--CNCY-KPVVLDDTNVYYMDVN-RDNAIVHVNINNPNPV-VLT-EANI--EHYNVYGSLIFYQRGGDNP 246 (302)
T ss_dssp --E-EEEEEC--SCEE-EEEEEETTEEEEEEGG-GTTEEEEECSSSCCCE-ECS-CSCE--EEEEEETTEEEEEECSSSC
T ss_pred --C-EEEEeC--CCcc-ceeeecCCEEEEEEcC-CCcEEEEEECCCCCeE-EEe-CCCc--ceEEECCCEEEEEECCCCc
Confidence 2 222221 2222 3456999888887653 1246777777655533 332 2233 3488889999874223346
Q ss_pred eEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEe-CCCcEEEEe
Q psy8285 405 SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAAS-ADETISIWN 452 (507)
Q Consensus 405 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~dg~i~iw~ 452 (507)
.|..-++..........+ .+. .+++.+.+|+-.. ..+.|..-+
T Consensus 247 ~i~~~~~DG~~r~~l~~~---~~~--~i~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 247 ALCVVKNDGTGFKELAKG---EFC--NINVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp EEEEEETTSCCCEEEEES---CEE--EEEECSSEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCccEEeeCC---ccc--eEEEeCCEEEEEECCCCeEEEEE
Confidence 777777764333222222 233 3444556665444 234444333
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.58 E-value=0.38 Score=43.01 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=89.4
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC----CC-------cEEEEeCCCceeEEE--EeecC
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC----TE-------YIDLWHEQEERLIQK--LRTHM 251 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----dg-------~i~iwd~~~~~~~~~--~~~~~ 251 (507)
..+..||+.+.+... ...+. ............++..++.+ +. ++ .+.+||..+.+-... +....
T Consensus 24 ~~~~~yd~~~~~W~~-~~~~~-~~~r~~~~~~~~~~~lyv~G-G~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 24 TAAVAYDPMENECYL-TALAE-QIPRNHSSIVTQQNQVYVVG-GLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp SEEEEEETTTTEEEE-EEECT-TSCSSEEEEECSSSCEEEEE-SSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred cceEEECCCCCceec-ccCCc-cCCccceEEEEECCEEEEEC-CcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 458999999888765 33321 12222333334566677777 42 12 277889877654322 11111
Q ss_pred ccEEEEEeeCCEEEEEecC-------CeEEEEECCCCCcCceeeecCCCce--EEEEEcCCCCEEEEEe--C-----CcE
Q psy8285 252 HQVIAMCWNGNLLSCGTIG-------GNILHYDVRTHSDYPTAITREGDVV--CGLKWSPNGRYLASGS--N-----NTV 315 (507)
Q Consensus 252 ~~v~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~--d-----~~i 315 (507)
........++.+++.|+.+ ..+.+||..+.+ -........+. .+++. .++++++.|+ + ..+
T Consensus 101 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 101 CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp CSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCE
T ss_pred cccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceE
Confidence 2223344478888888764 247888887654 11111111110 11222 3667777665 1 358
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC---CeEEEEeCCCCC
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD---QTVRLWNSMNGK 372 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~ 372 (507)
.+||+.+..- ..+..+.........+.+ ++ .+++.++...+ ..+.+||+.+.+
T Consensus 178 ~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 178 FIYNPKKGDW-KDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEEETTTTEE-EEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEEcCCCCEE-EECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCCCe
Confidence 9999886511 111111111111122222 33 67777653112 357889988765
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.55 E-value=0.24 Score=44.14 Aligned_cols=227 Identities=11% Similarity=0.061 Sum_probs=107.9
Q ss_pred CCCeEEEEeC---CCCcEEEEeCCCceeEEE--EeecCccEEEEEeeCCEEEEEec----C-----CeEEEEECCCCCcC
Q psy8285 219 RTTDLAVTNT---CTEYIDLWHEQEERLIQK--LRTHMHQVIAMCWNGNLLSCGTI----G-----GNILHYDVRTHSDY 284 (507)
Q Consensus 219 ~~~~l~~~~~---~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~----d-----g~i~i~d~~~~~~~ 284 (507)
++..++.+|. .-..+.+||..+.+-... +.........+..++.+++.|+. + ..+.+||+.+.+-.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 3445555521 123688888877653322 11111122233447777777775 2 45888998775411
Q ss_pred -ceeeecCCCceEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEcc
Q psy8285 285 -PTAITREGDVVCGLKWSPNGRYLASGS-N-----NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG 357 (507)
Q Consensus 285 -~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 357 (507)
...+.........+.+ ++++++.|+ + ..+.+||+.+..- ..+..+.........+.+ + ..+++.++.
T Consensus 104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~ 177 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW-HLVAPMLTRRIGVGVAVL--N-RLLYAVGGF 177 (308)
T ss_dssp ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--T-TEEEEECCB
T ss_pred ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE-eECCCCCccccceEEEEE--C-CEEEEEeCC
Confidence 1111111112222222 667777765 2 4688999876411 011111111111122222 3 367776653
Q ss_pred CC---CCeEEEEeCCCCCeeee--eecC-CCeEEEEECCCCCeEEEEeccCC-----CeEEEEeCCCccEE--EEeeccc
Q psy8285 358 IC---DQTVRLWNSMNGKEKCH--VKTD-SQVTSILWSEQYRELVTSHGKQD-----CSLKMWEYPRLHLI--EELKIHQ 424 (507)
Q Consensus 358 ~~---d~~i~i~d~~~~~~~~~--~~~~-~~i~~~~~s~~~~~l~~~~g~~d-----~~i~v~d~~~~~~~--~~~~~~~ 424 (507)
.. -..+.+||+.+.+-... +... .....+.+ +++.++. |+.+ ..+.+||+.+.+=. ..+....
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~--GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 253 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAA--GGYDGQDQLNSVERYDVETETWTFVAPMKHRR 253 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE--CCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEE--eCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence 11 24688999877643221 1111 11222333 5555555 5443 56999998775322 2222111
Q ss_pred cceeEEEECCCCCEEEEEeCC-----CcEEEEecCCCC
Q psy8285 425 ERILSAVLSPDQTCVAAASAD-----ETISIWNCFPRD 457 (507)
Q Consensus 425 ~~i~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~ 457 (507)
..-..+. -+++.++.|+.+ ..+.+||+.+.+
T Consensus 254 ~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 254 SALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred cceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1112222 256667777644 346677776543
No 329
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.54 E-value=0.42 Score=43.09 Aligned_cols=230 Identities=13% Similarity=0.030 Sum_probs=122.5
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE--EE----eecCccEEEEEee-----CCEEEEE-e--cCCe
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ--KL----RTHMHQVIAMCWN-----GNLLSCG-T--IGGN 272 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~--~~----~~~~~~v~~~~~~-----~~~l~~~-~--~dg~ 272 (507)
.-.....|+|.|+|+.+++- ...|.|++++..+++... .+ .........|+++ +..|... + .++.
T Consensus 30 gL~~P~~ia~~pdG~llVte-r~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSS-RDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEE-TTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcCCCcEEEEE-ecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 45567899999999877766 448999999876554322 11 1235567889983 3444433 2 3456
Q ss_pred EEEEECCCCC-------cCceee---e-cCCCceEEEEEcCCCCEEEEEeC--------------CcEEEEEcCCCC---
Q psy8285 273 ILHYDVRTHS-------DYPTAI---T-REGDVVCGLKWSPNGRYLASGSN--------------NTVKIWDFRQLD--- 324 (507)
Q Consensus 273 i~i~d~~~~~-------~~~~~~---~-~~~~~v~~~~~~~~~~~l~~~~d--------------~~i~i~d~~~~~--- 324 (507)
|.-|.+.... .....+ . .....-..+.|.|||.+.++.+| +.|.-.+....-
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 7667665421 011111 1 11112356899999988777542 344444443210
Q ss_pred -CC-CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC------------------eeeeeecC-CCe
Q psy8285 325 -AK-RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK------------------EKCHVKTD-SQV 383 (507)
Q Consensus 325 -~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------------------~~~~~~~~-~~i 383 (507)
.. .......+|. ....++|+|++ .++++-.+ .++.=.|--+..+. ++..+..+ ...
T Consensus 189 nPf~~~~i~a~G~R-Np~Gla~dp~G-~L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap 265 (347)
T 3das_A 189 NPFPGSPVYSYGHR-NVQGLAWDDKQ-RLFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP 265 (347)
T ss_dssp CSSTTCCEEEBCCS-BCCEEEECTTC-CEEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred CCCCCCeEEeeCCC-CcceEEECCCC-CEEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence 00 0011112343 34689999976 56665432 13222222222221 12222222 245
Q ss_pred EEEEECCCCCeEEEEeccCCCeEEEEeCCCccE----EEEeeccccceeEEEECCCCCEEEEEe
Q psy8285 384 TSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL----IEELKIHQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 384 ~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~s~~ 443 (507)
..++|.. |..+.. ....+.|....+..... ...+.+...++..++..|||.++++.+
T Consensus 266 ~G~~~~~-g~~~~~--~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 266 SGIAYAE-GSVWMA--GLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEET-TEEEEE--ESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cceEEEc-Cceeec--cccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 6677763 444444 34455666666654322 223344456799999999998666543
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.50 E-value=0.05 Score=49.81 Aligned_cols=64 Identities=19% Similarity=0.191 Sum_probs=36.1
Q ss_pred CCCeEEEEeCCCCcEEEEeCCC-ceeEEEEee----cCccEEEEEeeCCEEEEEec-C---------CeEEEEECCCCC
Q psy8285 219 RTTDLAVTNTCTEYIDLWHEQE-ERLIQKLRT----HMHQVIAMCWNGNLLSCGTI-G---------GNILHYDVRTHS 282 (507)
Q Consensus 219 ~~~~l~~~~~~dg~i~iwd~~~-~~~~~~~~~----~~~~v~~~~~~~~~l~~~~~-d---------g~i~i~d~~~~~ 282 (507)
++..++.+|.....+.+||+.+ ...-..+.. .......+..++.+++.|+. + ..+.+||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 4555555544455788888864 122222221 11222334447777877776 2 468899988754
No 331
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.48 E-value=0.63 Score=44.33 Aligned_cols=232 Identities=9% Similarity=0.016 Sum_probs=136.3
Q ss_pred eEEEEeCCCCcEEEEeCCCceeEEEEeecCc---------------------------cEEEEEe-----eCCEEEEEec
Q psy8285 222 DLAVTNTCTEYIDLWHEQEERLIQKLRTHMH---------------------------QVIAMCW-----NGNLLSCGTI 269 (507)
Q Consensus 222 ~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------------------~v~~~~~-----~~~~l~~~~~ 269 (507)
+.+.+|+..|.|+|+-+.+++.+..+..... --..+++ ||++|+.-..
T Consensus 71 y~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 71 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EEEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 4445558999999999999988877642110 0124455 6788877764
Q ss_pred -CCeEEEEECCCCCcCceeeecCCCceEEEEEc--CCCCEEEEEeCCcEEEEE----c--CCCCC-----------CCCe
Q psy8285 270 -GGNILHYDVRTHSDYPTAITREGDVVCGLKWS--PNGRYLASGSNNTVKIWD----F--RQLDA-----------KRPQ 329 (507)
Q Consensus 270 -dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~d~~i~i~d----~--~~~~~-----------~~~~ 329 (507)
+..|...+++..+............+.++.|- |+-.+++.++.-.+=+=+ + +..+. .+..
T Consensus 151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred CCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 45677888887653222333456678888886 677777766532221110 0 11000 0000
Q ss_pred eeecCCCCCeeEEEEccCCCcEEEEEccCC------------------------------------CC-eEEEEeCCC--
Q psy8285 330 VNNQCHLSAVKAIAWCPWEPTLLATGGGIC------------------------------------DQ-TVRLWNSMN-- 370 (507)
Q Consensus 330 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------------------------------d~-~i~i~d~~~-- 370 (507)
.... -.+....+...+++.+.++++-.++ ++ .+.+.|.+.
T Consensus 231 ~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~ 309 (638)
T 3sbq_A 231 FQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD 309 (638)
T ss_dssp EEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred EEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence 0000 0112223444666766666663211 11 345555544
Q ss_pred --C-CeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE-------------EEEeeccccceeEEEECC
Q psy8285 371 --G-KEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL-------------IEELKIHQERILSAVLSP 434 (507)
Q Consensus 371 --~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~-------------~~~~~~~~~~i~~~~~s~ 434 (507)
+ .....+........+..+|||++++++ |-.+.++.++|+..... ..+... .-.-...+|.+
T Consensus 310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~-GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~ 387 (638)
T 3sbq_A 310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAA-GKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDG 387 (638)
T ss_dssp TBCCSSEEEEEESSSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECS
T ss_pred ccCCceEEEEeCCCCCcceeeCCCCCEEEEc-CCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECC
Confidence 2 223333444556788999999999997 77889999999874211 223332 23356789999
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q psy8285 435 DQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 435 ~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+|....|.--|..|.-|++...
T Consensus 388 ~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 388 RGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp SSEEEEEETTTTEEEEEEHHHH
T ss_pred CCceEeeeeecceEEEEeccHH
Confidence 9955556668999999999753
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.34 E-value=0.41 Score=43.66 Aligned_cols=85 Identities=12% Similarity=0.168 Sum_probs=46.2
Q ss_pred cCCeEEEEECCC--CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC-C---------CcEEEEeCCCceeEEEE--e
Q psy8285 183 LDTSVYTWNTKT--NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC-T---------EYIDLWHEQEERLIQKL--R 248 (507)
Q Consensus 183 ~~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-d---------g~i~iwd~~~~~~~~~~--~ 248 (507)
....+.+||+.. .+...+..++........++.+ ++..++.+ +. + ..+.+||..+.+-...- .
T Consensus 29 ~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~G-G~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 105 (357)
T 2uvk_A 29 AGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFG-GIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA 105 (357)
T ss_dssp GTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEEC-CEEECTTSCEEECCCEEEEETTTTEEEECSCCC
T ss_pred CCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEc-CCCCCCCccceeeccEEEEeCCCCcEEECCCCC
Confidence 456899999874 5555554443102222233333 45556665 43 2 46889998876533221 1
Q ss_pred -ecCccEEEEEeeCCEEEEEecC
Q psy8285 249 -THMHQVIAMCWNGNLLSCGTIG 270 (507)
Q Consensus 249 -~~~~~v~~~~~~~~~l~~~~~d 270 (507)
.......++..++++++.|+.+
T Consensus 106 p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 106 PMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp SSCCSSEEEEEETTEEEEEECCC
T ss_pred CcccccceEEEECCEEEEEeCcC
Confidence 1122233444678888888754
No 333
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.29 E-value=0.67 Score=42.71 Aligned_cols=226 Identities=10% Similarity=0.095 Sum_probs=135.0
Q ss_pred CCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-eeEEEEeecC
Q psy8285 174 GYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-RLIQKLRTHM 251 (507)
Q Consensus 174 s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-~~~~~~~~~~ 251 (507)
+|.. ++|.-....+.++|+++.+..+...+ ..+|.-=.|-.+. .|+.. .+..|+-|++... .+.+.+..|.
T Consensus 74 nP~~~iiALrag~~lQiFnle~K~klks~~~----~e~VvfWkWis~~-~l~lV--T~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 74 NPASKVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLN-TVALV--TDNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp CSSSSCEEEEETTEEEEEETTTTEEEEEEEC----SSCCCEEEEEETT-EEEEE--CSSEEEEEESSSSCCCEEEEECCG
T ss_pred CCCCcEEEEecCCeEEEEchHHhhhhcceec----CCCceEEEecCCC-eEEEE--cCCeeEEecccCCCCchhheecch
Confidence 4443 77776799999999999988888875 3456667776554 55555 4788999999743 4555555433
Q ss_pred ----ccEEEEEe--eCCEEEEEe-------cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC---CCEEEEEeC---
Q psy8285 252 ----HQVIAMCW--NGNLLSCGT-------IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN---GRYLASGSN--- 312 (507)
Q Consensus 252 ----~~v~~~~~--~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~d--- 312 (507)
..|..... +.++++..+ -.|.+.+|..+.. ....+.+|......+.+..+ .++++.+..
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--ccchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 23333333 456655433 2367889998864 36677787665544444322 134555542
Q ss_pred -CcEEEEEcCCC-CCCCCee----e-e---cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-C
Q psy8285 313 -NTVKIWDFRQL-DAKRPQV----N-N---QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-S 381 (507)
Q Consensus 313 -~~i~i~d~~~~-~~~~~~~----~-~---~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~ 381 (507)
+.++|.++... ....+.. . + ....+-..++..++.-..+++... -|.+++||+.++.++..-+-. .
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---~G~i~lyDleTgt~i~~nrIs~~ 301 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---YGYIHLYDLETGTCIYMNRISGE 301 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET---TSEEEEEETTTCCEEEEEECCSS
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec---CceEEEEecccceeeeeecccCC
Confidence 78999998643 1111110 0 1 112233457777877666666554 899999999999998766544 3
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
.|...+-.....-++. -...|.|.-..+..
T Consensus 302 ~iF~t~~~~~~~Gi~~--Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 302 TIFVTAPHEATAGIIG--VNRKGQVLSVCVEE 331 (494)
T ss_dssp CEEEEEEETTTTEEEE--EETTCEEEEEEECT
T ss_pred ceEEecccCCCCcEEE--EccCceEEEEEEcc
Confidence 4443333333333333 23555555544443
No 334
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.28 E-value=0.83 Score=43.55 Aligned_cols=250 Identities=12% Similarity=0.057 Sum_probs=131.7
Q ss_pred cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEc--cCCCeEEEEeCC-------CCcEEEEeCCCceeEEEEeecCcc
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWK--PRTTDLAVTNTC-------TEYIDLWHEQEERLIQKLRTHMHQ 253 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~ 253 (507)
.+.+|-..++...+..++.+++ ....+..+.|- |+..|+++. +. ||.. ..+...+....+..-...
T Consensus 151 an~RvAri~l~~~~~d~Ii~iP--n~~~~Hg~~~~~~p~T~yv~~~-~e~~~P~pndg~~--~~~~~~~~y~~f~~iD~~ 225 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVP--NVQAIHGLRLQKVPHTKYVFAN-AEFIIPHPNDGKV--FDLQDENSYTMYNAIDAE 225 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECT--TCSCEEEEEECCSSBCCEEEEE-ECSCEESSCSSSC--CCTTSTTEEEEEEEEETT
T ss_pred CCcceEEEECCcEeeceeEeCC--CCcCcccccccccCCccEEEec-ceeeccCCCCCcc--cccCChhhceEEEEEcCC
Confidence 5678888999999998888887 57789999996 788888877 43 3321 111111111111110000
Q ss_pred EEEEEe----eCCE-EEEEecCCeEEEEECCCCCcCceeee-cCCCceEEEEEc--------CCCCEEEEEeCC-cEEEE
Q psy8285 254 VIAMCW----NGNL-LSCGTIGGNILHYDVRTHSDYPTAIT-REGDVVCGLKWS--------PNGRYLASGSNN-TVKIW 318 (507)
Q Consensus 254 v~~~~~----~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~--------~~~~~l~~~~d~-~i~i~ 318 (507)
-..++| ++++ .+-.+.+|...++..-+.+.-..... .....=..+.|+ .+|++-.. ++ .|.+.
T Consensus 226 tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~--~g~gv~Vi 303 (638)
T 3sbq_A 226 TMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITL--GDSKTPVL 303 (638)
T ss_dssp TCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCC--TTCCCCEE
T ss_pred ccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEE--CCCCeeEE
Confidence 011122 2211 11122223322222221111100000 011111223332 13432211 11 57788
Q ss_pred EcCCCCC-CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC------Ce-------eeeeecCCCeE
Q psy8285 319 DFRQLDA-KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG------KE-------KCHVKTDSQVT 384 (507)
Q Consensus 319 d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~------~~-------~~~~~~~~~i~ 384 (507)
|.+.... ...+..+..-......+..+|||+++++++-. +.++.++|.+.- +. ....+..-...
T Consensus 304 D~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKL--sptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPl 381 (638)
T 3sbq_A 304 DGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKL--SPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPL 381 (638)
T ss_dssp ECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTT--SSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEE
T ss_pred ccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCC--CCeEEEEEeehhhhhhhccccCcccceEeeccCCCccc
Confidence 8775110 02333333344556689999999988888764 999999998742 11 22333345678
Q ss_pred EEEECCCCCeEEEEeccCCCeEEEEeCCCc----------cEEEEeeccccceeEE-----EECCCCCEEEEEe
Q psy8285 385 SILWSEQYRELVTSHGKQDCSLKMWEYPRL----------HLIEELKIHQERILSA-----VLSPDQTCVAAAS 443 (507)
Q Consensus 385 ~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~----------~~~~~~~~~~~~i~~~-----~~s~~~~~l~s~~ 443 (507)
..+|.++| ..+++ -.-|..|.-|++... ..+..+..|-.+-.-. .-.|||++|++..
T Consensus 382 Ht~Fd~~G-~aYTt-lfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 382 HTTFDGRG-NAYTT-LFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEECSSS-EEEEE-ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred EEEECCCC-ceEee-eeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 89999999 44443 678999999998653 3455555554332211 1256888888764
No 335
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.20 E-value=0.87 Score=43.04 Aligned_cols=103 Identities=8% Similarity=0.086 Sum_probs=60.4
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE--EEee------cCccEEEEEee-----CCEEEEEec------
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ--KLRT------HMHQVIAMCWN-----GNLLSCGTI------ 269 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~--~~~~------~~~~v~~~~~~-----~~~l~~~~~------ 269 (507)
.....|+|.|+|+.+++- ...+.|++++..+++... .+.. .......|+|+ +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e-~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTE-RATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEE-TTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEE-cCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 346799999999877665 433579888865554322 2221 24567789995 556555543
Q ss_pred -------CCeEEEEECCCCC----cCceee---e-cCCCceEEEEEcCCCCEEEEEeC
Q psy8285 270 -------GGNILHYDVRTHS----DYPTAI---T-REGDVVCGLKWSPNGRYLASGSN 312 (507)
Q Consensus 270 -------dg~i~i~d~~~~~----~~~~~~---~-~~~~~v~~~~~~~~~~~l~~~~d 312 (507)
...|..++..... .....+ . ........++|.|||.+.++.+|
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2356666654321 011111 1 11224688999999998777554
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.11 Score=46.59 Aligned_cols=103 Identities=6% Similarity=0.027 Sum_probs=65.1
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEE--ccCCCeEEEEe-CCCCcEEEEeCCCceeEEEEee----c
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAW--KPRTTDLAVTN-TCTEYIDLWHEQEERLIQKLRT----H 250 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~-~~dg~i~iwd~~~~~~~~~~~~----~ 250 (507)
+++++.||.|+-+|..+|+..-.+... ...++....- .+.+..+++.. +.||.|..++..+|.....+.. .
T Consensus 13 V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 13 LIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 677789999999999999987776643 1112222110 01122344432 4799999999988865544432 1
Q ss_pred CccEEE---EEe-------eCCEEEEEecCCeEEEEECCCCC
Q psy8285 251 MHQVIA---MCW-------NGNLLSCGTIGGNILHYDVRTHS 282 (507)
Q Consensus 251 ~~~v~~---~~~-------~~~~l~~~~~dg~i~i~d~~~~~ 282 (507)
..++.. ... .+..+++++.+|.+...|+++++
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 222221 001 46678899999999999999987
No 337
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.95 E-value=0.93 Score=41.21 Aligned_cols=223 Identities=11% Similarity=0.060 Sum_probs=117.0
Q ss_pred eeeeeCCCC--EEEEEcCCeEEEEECCCCceeE-EEecC---CCCCCceEEEEEccC---CCeEEEEeCC-------CCc
Q psy8285 169 SGLDWGYHD--TLAVALDTSVYTWNTKTNKTQL-LVEYP---TYDNAYISCVAWKPR---TTDLAVTNTC-------TEY 232 (507)
Q Consensus 169 ~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~~-------dg~ 232 (507)
..|+|.|++ ++++...+.|++++.. +.... +..++ .........++|+|+ +..|.++... ...
T Consensus 21 ~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~ 99 (353)
T 2g8s_A 21 WALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTA 99 (353)
T ss_dssp EEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEE
T ss_pred EEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeE
Confidence 468899986 5566678999999853 33221 11111 002456789999996 5566655122 235
Q ss_pred EEEEeCCCc----eeEEE-Eeec------CccEEEEEe--eCCEEEEEec-------------CCeEEEEECCCCC----
Q psy8285 233 IDLWHEQEE----RLIQK-LRTH------MHQVIAMCW--NGNLLSCGTI-------------GGNILHYDVRTHS---- 282 (507)
Q Consensus 233 i~iwd~~~~----~~~~~-~~~~------~~~v~~~~~--~~~~l~~~~~-------------dg~i~i~d~~~~~---- 282 (507)
|..|+.... ..... +... ......+.| ++.+.++.+. .|.|.-++....-
T Consensus 100 v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~n 179 (353)
T 2g8s_A 100 VGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDN 179 (353)
T ss_dssp EEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTC
T ss_pred EEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCC
Confidence 666666432 11111 1111 111245777 6755555433 2467777765420
Q ss_pred --------cCceeeecCCCceEEEEEcC-CCCEEEEEeC--CcEEEEEcCCCCC--------------------------
Q psy8285 283 --------DYPTAITREGDVVCGLKWSP-NGRYLASGSN--NTVKIWDFRQLDA-------------------------- 325 (507)
Q Consensus 283 --------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~d--~~i~i~d~~~~~~-------------------------- 325 (507)
.......++ .....++|.| +++++++-.. +.=.|.-+..+..
T Consensus 180 pf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~ 258 (353)
T 2g8s_A 180 PFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVA 258 (353)
T ss_dssp TTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCT
T ss_pred CCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCC
Confidence 111222233 3467899999 5655554332 2222222222110
Q ss_pred --CCCeeeecCCCCCeeEEEEcc-------CCCcEEEEEccCCCCeEEEEeCCCCCeeee--e-ec-CCCeEEEEECCCC
Q psy8285 326 --KRPQVNNQCHLSAVKAIAWCP-------WEPTLLATGGGICDQTVRLWNSMNGKEKCH--V-KT-DSQVTSILWSEQY 392 (507)
Q Consensus 326 --~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~--~-~~-~~~i~~~~~s~~~ 392 (507)
..++..+. +......+.|.. ++ .++++.-. .+.|...++..++.... + .. ...+..+++.|||
T Consensus 259 ~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g-~l~v~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 259 GTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQ-KLFIGALK--DKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp TSCCCSEEES-SCCCEEEEEEECCSSSGGGTT-EEEEEETT--TTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CccCCeEEeC-CCcCcceeEEECCccCcccCC-cEEEEEcc--CCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 11122222 233566788864 24 55555443 77888888776543322 2 12 2578999999999
Q ss_pred CeEEE
Q psy8285 393 RELVT 397 (507)
Q Consensus 393 ~~l~~ 397 (507)
..+++
T Consensus 335 ~lyv~ 339 (353)
T 2g8s_A 335 YLYVL 339 (353)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 86665
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.23 Score=44.55 Aligned_cols=185 Identities=10% Similarity=-0.018 Sum_probs=96.1
Q ss_pred CeEEEEeCCCCcEEEEeCCCceeEEEEeec-CccEEEEEe-----eCCEEEEE-ecCCeEEEEECCCCCcCceeeec---
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTH-MHQVIAMCW-----NGNLLSCG-TIGGNILHYDVRTHSDYPTAITR--- 290 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-----~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--- 290 (507)
..++++ +.||.|.-+|..+|+.+..+... ..++....- ++..++.. +.||.|+.++..++... ..+..
T Consensus 11 ~~V~v~-t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~~l 88 (339)
T 2be1_A 11 DILIAA-DVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSIRQL 88 (339)
T ss_dssp EEEEEE-ETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEHHHH
T ss_pred CEEEEE-eCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeeccccc
Confidence 356666 89999999999999999888754 123322221 22333333 68999999998776321 11110
Q ss_pred -CCCceEE---EEE-----cCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCC--CC-----eeEEEEc-----cCC
Q psy8285 291 -EGDVVCG---LKW-----SPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHL--SA-----VKAIAWC-----PWE 348 (507)
Q Consensus 291 -~~~~v~~---~~~-----~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~--~~-----v~~~~~~-----~~~ 348 (507)
...++.. ... ...+..+++|+ ++.+...|++++ +.+..+.... +. ..|.... ..+
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG---~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG---EIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTC---CEEEEESTTCBCC--------------------C
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC---cEEEEEecCCCcccccccccccccccccccccCC
Confidence 1112221 000 00344666676 699999999998 6666654221 00 0111110 112
Q ss_pred CcEEEEEccCCCCeEEEEeCCCCCeeeeeecC----CCeE-----EEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE
Q psy8285 349 PTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----SQVT-----SILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE 418 (507)
Q Consensus 349 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~i~-----~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~ 418 (507)
..+++ +.. +..+.+.+ ++|+ +..+... ..+. .-..+.|+.+++ ++.||.|.-+|..+++.+.
T Consensus 166 ~~v~i-g~~--~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~---~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 166 NMIVI-GKT--IFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIA---PFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CEEEE-EEE--EEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEE---EETTTEEEEECSTTCCEEE
T ss_pred CeEEE-ecc--eEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEE---ECCCCEEEEEECCCCcEEE
Confidence 23333 332 66777766 4554 3222110 0000 000123456644 4568888888888887765
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.72 E-value=0.66 Score=49.64 Aligned_cols=222 Identities=9% Similarity=0.068 Sum_probs=123.9
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-eeEEEEeec----C
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-RLIQKLRTH----M 251 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-~~~~~~~~~----~ 251 (507)
.++|.-.+..+.|+|+++.+..+.+.+ ..+|.-=.|-... .|+.. .+..|+-|++... .+.+.+..| .
T Consensus 78 ~iiALrag~~lQiFnl~~k~klks~~~----~e~VvfWkWis~~-~l~lV--T~~aVyHW~~~~~s~P~k~fdR~~~L~~ 150 (1630)
T 1xi4_A 78 KVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLN-TVALV--TDNAVYHWSMEGESQPVKMFDRHSSLAG 150 (1630)
T ss_pred ceEEEecCCeEEEeehHHhhhhccccc----CCCceEEEecCCC-eeEEE--cCCeEEEeccCCCCccHHHHhcchhccc
Confidence 377777789999999998887777765 3457777776554 44444 4778999999642 333333323 2
Q ss_pred ccEEEEEe--eCCEEEEEe-------cCCeEEEEECCCCCcCceeeecCCCceEEEEEcC---CCCEEEEEeC----CcE
Q psy8285 252 HQVIAMCW--NGNLLSCGT-------IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP---NGRYLASGSN----NTV 315 (507)
Q Consensus 252 ~~v~~~~~--~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~d----~~i 315 (507)
..|..... +.++++..+ -.|.+.+|...... ...+.+|......+.... ...+++.+.. +.+
T Consensus 151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL 228 (1630)
T 1xi4_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (1630)
T ss_pred CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc--chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence 23333333 455555433 34788899887643 555666655544333321 2234444432 788
Q ss_pred EEEEcCCC-CCCCCe-----eeecC---CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEE
Q psy8285 316 KIWDFRQL-DAKRPQ-----VNNQC---HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTS 385 (507)
Q Consensus 316 ~i~d~~~~-~~~~~~-----~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~ 385 (507)
+|.++... ....+. ..+.. ...-..++..++.-.-+++... -|.+++||+.++.++..-+-. ..|..
T Consensus 229 hi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk---~G~~~~~d~~t~~~i~~~ris~~~iF~ 305 (1630)
T 1xi4_A 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---YGYIHLYDLETGTCIYMNRISGETIFV 305 (1630)
T ss_pred EEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec---CceEEEEecccchhhhhccccCCceEE
Confidence 99888543 100111 00110 1222345666666555555554 899999999999887654433 23333
Q ss_pred EEECC-CCCeEEEEeccCCCeEEEEeCCC
Q psy8285 386 ILWSE-QYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 386 ~~~s~-~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
.+-.. .+..+.+ ...|.|.-..+..
T Consensus 306 ~~~~~~~~g~~~v---nr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 306 TAPHEATAGIIGV---NRKGQVLSVCVEE 331 (1630)
T ss_pred eccCCCCCceEEE---cCCceEEEEEEcc
Confidence 33332 2333333 3455554444433
No 340
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.52 E-value=2.5 Score=43.05 Aligned_cols=261 Identities=11% Similarity=0.091 Sum_probs=148.5
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
.|.+|.-..+| +..++.+ -+..||-...+ ............|.++.-..++ .|.++ +.+| +..||..+.+...
T Consensus 23 ~V~~I~qD~~G~lWigT~~-GL~ryDG~~~~--~~~~~~~~~~~~i~~i~~d~~g-~lWig-T~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 23 VVSCFLQDSEGLIWIGSNK-GLFSYDGYSTQ--QHFTYGENNNTRIYCGVIIDNT-YLYMG-TDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CEEEEEECTTSCEEEEESS-CEEEECSSCEE--ECSCTTSTTSSCEEEEEEETTT-EEEEE-ETTE-EEEEETTTTEECC
T ss_pred eEEEEEECCCCCEEEEECC-CccccCCCceE--EEEccCCCCCceEEEEEEcCCC-cEEEE-eCCC-eEEEeCCCCEEEC
Confidence 47777777777 4555554 46677743211 1111111034568888877766 55555 4554 7899988764432
Q ss_pred EEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeee-----cCCCceEEEEEcCCCCEEEEEeCCcEEEEEc
Q psy8285 246 KLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAIT-----REGDVVCGLKWSPNGRYLASGSNNTVKIWDF 320 (507)
Q Consensus 246 ~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~ 320 (507)
........|.++..++..|..++.+ -+..+|..+.. ...+. .....|.++....++++.+. +++-+..++.
T Consensus 97 ~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~Gl~~~~~ 172 (758)
T 3ott_A 97 PETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRK--LTSFDTRRNGLPNNTIYSIIRTKDNQIYVG-TYNGLCRYIP 172 (758)
T ss_dssp CSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCC--EEEECHHHHCCSCSCEEEEEECTTCCEEEE-ETTEEEEEET
T ss_pred cccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCe--EEEeccCCCCcCCCeEEEEEEcCCCCEEEE-eCCCHhhCcc
Confidence 1111233466665555566667765 67888887644 22221 12346888888888876664 4445777887
Q ss_pred CCCCCCCCeeeecC------CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee-cCCCeEEEEECCCCC
Q psy8285 321 RQLDAKRPQVNNQC------HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYR 393 (507)
Q Consensus 321 ~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~s~~~~ 393 (507)
... ....+.. ....|.++...+++..+.+ +. ++-+..+|..+++...... ....|.++...++|.
T Consensus 173 ~~~----~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-gt---~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 244 (758)
T 3ott_A 173 SNG----KFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI-GT---EGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD 244 (758)
T ss_dssp TTT----EEEEECCCCCTTCSSCCEEEEEEETTTTEEEE-EE---EEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC
T ss_pred CCC----ceEEecCCCccccccceeEEEEEECCCCEEEE-EE---CCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC
Confidence 653 1221111 1234788887776654444 32 3458888987665332111 124588888888887
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEee-------ccccceeEEEECCCCCEEEEEeCCCcEEEE
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELK-------IHQERILSAVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 451 (507)
..+. +. +-+.+++..+.+...... -....|.++....+|.+.+ |+..| +.++
T Consensus 245 lWig---T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~ 303 (758)
T 3ott_A 245 LLAG---TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLS 303 (758)
T ss_dssp EEEE---ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEE
T ss_pred EEEE---eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccc
Confidence 7665 33 458888876654322111 0124588888888877554 44556 5444
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.48 E-value=1.3 Score=39.47 Aligned_cols=212 Identities=9% Similarity=0.047 Sum_probs=98.0
Q ss_pred cEEEEeCCCceeEEE-Eee-cCccEEEEEe-eCCEEEEEec----CC-------eEEEEECCCCCcCc-eeeecCCCceE
Q psy8285 232 YIDLWHEQEERLIQK-LRT-HMHQVIAMCW-NGNLLSCGTI----GG-------NILHYDVRTHSDYP-TAITREGDVVC 296 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~-~~~-~~~~v~~~~~-~~~~l~~~~~----dg-------~i~i~d~~~~~~~~-~~~~~~~~~v~ 296 (507)
.+..||..+.+-... +.. ....-.++.. ++.+++.|+. ++ .+.+||..+.+-.. ..+........
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 488999988765442 111 1111223333 7888888873 12 17788887654110 01111111112
Q ss_pred EEEEcCCCCEEEEEe-C-------CcEEEEEcCCCCCCCCeeeecCCCCC-e-eEEEEccCCCcEEEEEccCC----CCe
Q psy8285 297 GLKWSPNGRYLASGS-N-------NTVKIWDFRQLDAKRPQVNNQCHLSA-V-KAIAWCPWEPTLLATGGGIC----DQT 362 (507)
Q Consensus 297 ~~~~~~~~~~l~~~~-d-------~~i~i~d~~~~~~~~~~~~~~~~~~~-v-~~~~~~~~~~~~~~~~~~~~----d~~ 362 (507)
.+.+ ++++++.|+ + ..+.+||+.+. .-........+ . .++.. .++ .+++.++... -..
T Consensus 105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~----~W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA----KWSEVKNLPIKVYGHNVIS-HNG-MIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT----EEEEECCCSSCEESCEEEE-ETT-EEEEECCEESSSCBCCC
T ss_pred eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC----CEeECCCCCCcccccEEEE-ECC-EEEEEcCCCCCCCccce
Confidence 2222 566766665 3 35788888764 11111111111 0 11222 234 6766664211 245
Q ss_pred EEEEeCCCCCeeee--eecCC-CeEEEEECCCCCeEEEEeccCC-----CeEEEEeCCCcc--EEEEeeccccceeEEEE
Q psy8285 363 VRLWNSMNGKEKCH--VKTDS-QVTSILWSEQYRELVTSHGKQD-----CSLKMWEYPRLH--LIEELKIHQERILSAVL 432 (507)
Q Consensus 363 i~i~d~~~~~~~~~--~~~~~-~i~~~~~s~~~~~l~~~~g~~d-----~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~ 432 (507)
+.+||+.+.+-... +.... ....+.+ +++.++. |+.+ ..+.+||..+.+ .+..+......-..+.
T Consensus 177 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~--GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIA--GGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS- 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE--EEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-
T ss_pred EEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEE--cCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE-
Confidence 89999887653222 11111 1222222 4555555 3322 357889987653 2222221111111222
Q ss_pred CCCCCEEEEEeCC--------------CcEEEEecCCCC
Q psy8285 433 SPDQTCVAAASAD--------------ETISIWNCFPRD 457 (507)
Q Consensus 433 s~~~~~l~s~~~d--------------g~i~iw~~~~~~ 457 (507)
.+++.++.|+.+ ..+.+||+.+.+
T Consensus 252 -~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 252 -LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp -ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred -ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 256666666643 346677766543
No 342
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.14 E-value=1.6 Score=38.71 Aligned_cols=183 Identities=9% Similarity=0.072 Sum_probs=86.7
Q ss_pred EEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-----C-------CcEEEEEcCCCCCCCCee
Q psy8285 263 LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-----N-------NTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 263 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----d-------~~i~i~d~~~~~~~~~~~ 330 (507)
+++.|+ ..+.+||..+.+-....+..............++++++.|+ + ..+..||..+..- ..+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW-LGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE-EECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE-EECC
Confidence 344454 57889998876522222211112222233345677777766 1 1277888876411 0111
Q ss_pred eecCCCCCeeEEEEccCCCcEEEEEcc------CCCCeEEEEeCCCCCeee--eeecCC-CeEEEEECCCCCeEEEEecc
Q psy8285 331 NNQCHLSAVKAIAWCPWEPTLLATGGG------ICDQTVRLWNSMNGKEKC--HVKTDS-QVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 331 ~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~d~~i~i~d~~~~~~~~--~~~~~~-~i~~~~~s~~~~~l~~~~g~ 401 (507)
.+.........+.+ +..+++.|+. ..-..+.+||..+.+-.. .+.... ....+. .+++.++. |+
T Consensus 84 ~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~--GG 156 (315)
T 4asc_A 84 PLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVI--GG 156 (315)
T ss_dssp CBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEE--CC
T ss_pred CCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEE--eC
Confidence 11111111112222 3367776652 112468999988764222 121111 122222 34555555 44
Q ss_pred C-C-----CeEEEEeCCCcc--EEEEeeccccceeEEEECCCCCEEEEEeCCC-----cEEEEecCCCC
Q psy8285 402 Q-D-----CSLKMWEYPRLH--LIEELKIHQERILSAVLSPDQTCVAAASADE-----TISIWNCFPRD 457 (507)
Q Consensus 402 ~-d-----~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~ 457 (507)
. + ..+.+||..+.+ .+..+......-..+. -+++.++.|+.++ .+.+||+.+.+
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 3 2 468999987653 2222221111112222 2667777777654 47788887654
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.01 E-value=0.9 Score=45.72 Aligned_cols=186 Identities=13% Similarity=0.157 Sum_probs=98.0
Q ss_pred CeEEEEECCCCceeEEE-e-----cCCCCCCceEEEEEccCCCeEEEEeCCC-----CcEEEEeCCCceeEEE--EeecC
Q psy8285 185 TSVYTWNTKTNKTQLLV-E-----YPTYDNAYISCVAWKPRTTDLAVTNTCT-----EYIDLWHEQEERLIQK--LRTHM 251 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~-~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~ 251 (507)
..+.+||+.+++..... . .+. ....-..+.+..++..++.||... ..+.+||..+.+-... +....
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~-~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R 490 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPV-ARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR 490 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCC-CCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCc-cccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence 46899999988876665 3 221 222233333322666666663221 3588999887543322 22222
Q ss_pred ccEEEEEe-eCCEEEEEecCC--eEEEEECCCCCcCcee----eecCCCceEEEEEcCC-CCEEEEEe-C-------CcE
Q psy8285 252 HQVIAMCW-NGNLLSCGTIGG--NILHYDVRTHSDYPTA----ITREGDVVCGLKWSPN-GRYLASGS-N-------NTV 315 (507)
Q Consensus 252 ~~v~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~~~~----~~~~~~~v~~~~~~~~-~~~l~~~~-d-------~~i 315 (507)
..-.++.+ ++.+++.|+.++ .+.+||..+..-.... ..........+.+..+ +++++.|+ + ..+
T Consensus 491 ~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v 570 (695)
T 2zwa_A 491 FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKA 570 (695)
T ss_dssp BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEE
T ss_pred ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcE
Confidence 23344554 788888888765 6899998875411110 1111222233555555 66777765 2 358
Q ss_pred EEEEcCCCCC-----CCCeeeec-CCCCCeeEEEEccCCCcEEEEEccC------CCCeEEEEeCCCCCe
Q psy8285 316 KIWDFRQLDA-----KRPQVNNQ-CHLSAVKAIAWCPWEPTLLATGGGI------CDQTVRLWNSMNGKE 373 (507)
Q Consensus 316 ~i~d~~~~~~-----~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~------~d~~i~i~d~~~~~~ 373 (507)
.+||+.+... ...+.... ...... ++....++ .+++.|+.+ ....+.+||+.+.+-
T Consensus 571 ~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 571 IIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPR-KLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp EEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETT-EEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred EEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCC-EEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 8999987631 01111111 111111 22222223 677776532 134689999987653
No 344
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.86 E-value=1.8 Score=37.77 Aligned_cols=227 Identities=11% Similarity=0.030 Sum_probs=119.8
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceee
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAI 288 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 288 (507)
..|..++... ...++. . ||.|+.|-......+..-......|..++......+.-. ||.|+.|-.......-. .
T Consensus 24 ~~i~~ia~G~--~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~-P 97 (282)
T 3qhy_B 24 SGVDAIAGGY--FHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV-P 97 (282)
T ss_dssp SSCCEEEECS--SEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC-C
T ss_pred CCCcEEEeCC--CeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC-C
Confidence 3566666543 344444 5 899999975543222111122346777777444433345 99999998775432211 1
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeC
Q psy8285 289 TREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNS 368 (507)
Q Consensus 289 ~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 368 (507)
......|..++...+...+++ ++.|+.|-...... +-........|..++.... +.++. . |+.+..|-.
T Consensus 98 ~~~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gq---lg~~~~~~~~i~~i~~G~~--~~~~l-~---~G~v~~wG~ 166 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQ---TTVPAEAQSGVTALDGGVY--TALAV-K---NGGVIAWGD 166 (282)
T ss_dssp GGGSSSEEEEEEETTEEEEEE--TTEEEEEECCTTST---TSCCGGGGSSEEEEEECSS--EEEEE-E---TTEEEEEEC
T ss_pred cccCCCeEEEECcCCEEEEEe--CCeEEEecCCCCCc---CCCCccCCCCeEEEEcccC--EEEEE-E---CCEEEEecC
Confidence 112346777777655444444 89999997655311 1111112345777765443 22322 2 688888876
Q ss_pred CCCCeee-eeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCc
Q psy8285 369 MNGKEKC-HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADET 447 (507)
Q Consensus 369 ~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~ 447 (507)
.....+. .......|..++.-. .+.++ - .||.|+.|-....-.+..-......|..++...... ++ -. ||.
T Consensus 167 n~~gqlg~p~~~~~~v~~i~~G~--~hs~a--l-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~a-l~-~g~ 238 (282)
T 3qhy_B 167 NYFGQTTVPAEAQSGVDDVAGGI--FHSLA--L-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYS-LA-LK-NGK 238 (282)
T ss_dssp CTTSTTSCCGGGGSSEEEEEECS--SEEEE--E-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCE-EE-EE-TTE
T ss_pred CCCCCCCCceecCCCeEEEEecC--CEEEE--E-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEE-EE-EE-CCE
Confidence 4422211 111124566665533 23333 3 488899987544322211111234577777654433 33 33 999
Q ss_pred EEEEecCCCCccc
Q psy8285 448 ISIWNCFPRDKKR 460 (507)
Q Consensus 448 i~iw~~~~~~~~~ 460 (507)
|+.|=.....+..
T Consensus 239 v~~wG~n~~gq~~ 251 (282)
T 3qhy_B 239 VIAWGSSRTAPSS 251 (282)
T ss_dssp EEEESTTCCCCGG
T ss_pred EEEecCCCCcccc
Confidence 9999876654443
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.75 E-value=2.2 Score=42.89 Aligned_cols=194 Identities=12% Similarity=0.047 Sum_probs=100.8
Q ss_pred cCCCeEEEEeCC----CCcEEEEeCCCceeEEEE-e-------ecCccEEEEEe--eCCEEEEEecCC------eEEEEE
Q psy8285 218 PRTTDLAVTNTC----TEYIDLWHEQEERLIQKL-R-------THMHQVIAMCW--NGNLLSCGTIGG------NILHYD 277 (507)
Q Consensus 218 ~~~~~l~~~~~~----dg~i~iwd~~~~~~~~~~-~-------~~~~~v~~~~~--~~~~l~~~~~dg------~i~i~d 277 (507)
.++..++.| +. -..+.+||..+.+-...- . .....-..+.. ++.+++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~G-G~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMG-GSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEEC-CBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEEC-CCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 455566666 43 246889998876543332 1 11223345556 777778877543 578889
Q ss_pred CCCCCcC-ceeeecCCCceEEEEEcCCCCEEEEEe-C--CcEEEEEcCCCCCCCCeee---ecCCCCCeeEEEEccCCCc
Q psy8285 278 VRTHSDY-PTAITREGDVVCGLKWSPNGRYLASGS-N--NTVKIWDFRQLDAKRPQVN---NQCHLSAVKAIAWCPWEPT 350 (507)
Q Consensus 278 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-d--~~i~i~d~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~ 350 (507)
..+..-. ...+..... -.+++...++++++.|+ + +.+.+||+.+..-. .+.. .........++.+..+...
T Consensus 475 ~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK-DVTPKDEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE-ECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred CCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE-EccCCCCCCCcccceeEEEEeCCCCE
Confidence 8875311 111111111 12233334788888887 3 47999998875110 1110 1112222234555655346
Q ss_pred EEEEEccCCC-----CeEEEEeCCCCCe-----eeeee----cCCCeEEEEECCCCCeEEEEeccC--------CCeEEE
Q psy8285 351 LLATGGGICD-----QTVRLWNSMNGKE-----KCHVK----TDSQVTSILWSEQYRELVTSHGKQ--------DCSLKM 408 (507)
Q Consensus 351 ~~~~~~~~~d-----~~i~i~d~~~~~~-----~~~~~----~~~~i~~~~~s~~~~~l~~~~g~~--------d~~i~v 408 (507)
+++.|+...+ ..+.+||+.+.+- -..+. ....-.++....+++.++. |+. ...+.+
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIV--GGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEE--CCBCSSCCCCTTTSEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEE--CCccCCCCCCCCCeEEE
Confidence 7777753222 4689999988761 11111 1111112223333555555 442 356999
Q ss_pred EeCCCccE
Q psy8285 409 WEYPRLHL 416 (507)
Q Consensus 409 ~d~~~~~~ 416 (507)
||..+.+-
T Consensus 631 yd~~t~~W 638 (695)
T 2zwa_A 631 LDPLSETL 638 (695)
T ss_dssp EETTTTEE
T ss_pred EECCCCeE
Confidence 99887643
No 346
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.65 E-value=0.3 Score=40.43 Aligned_cols=102 Identities=10% Similarity=0.006 Sum_probs=65.0
Q ss_pred CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee------eeecC--CCeEEEEECCCCCeEEEEeccCCCeEEE
Q psy8285 337 SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC------HVKTD--SQVTSILWSEQYRELVTSHGKQDCSLKM 408 (507)
Q Consensus 337 ~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~------~~~~~--~~i~~~~~s~~~~~l~~~~g~~d~~i~v 408 (507)
..+..++|+|++ .|.++ . ++.++-.+..+.+... .+... .....+.|.|+|.+.++ .||.|+-
T Consensus 41 ~~~~~laf~P~G-~LYaV-~---~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav----~dG~iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSPGG-ELYGV-L---NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV----SKDKLYK 111 (236)
T ss_dssp TTCSEEEECTTS-CEEEE-E---TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE----ETTEEEE
T ss_pred ccceeEEECCCc-cEEEE-e---CCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe----CCCEEEE
Confidence 467799999987 56666 4 7888887765533221 12111 22578999999988776 3699988
Q ss_pred EeCCCccEEE------Ee-eccccceeEEEECCCCCEEEEEeCCCcEE
Q psy8285 409 WEYPRLHLIE------EL-KIHQERILSAVLSPDQTCVAAASADETIS 449 (507)
Q Consensus 409 ~d~~~~~~~~------~~-~~~~~~i~~~~~s~~~~~l~s~~~dg~i~ 449 (507)
++-.+...-. .+ ..-=..+..|.|.|+|.+.+.. |+.++
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 8764321110 11 1112467899999999876665 77743
No 347
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.24 E-value=3.7 Score=38.70 Aligned_cols=100 Identities=13% Similarity=0.175 Sum_probs=58.5
Q ss_pred eeeeeCCCC-EEEEEcCC-eEEEEECCCCceeEEEecCCC-----CCCceEEEEEccC---CCeEEEEeCC---------
Q psy8285 169 SGLDWGYHD-TLAVALDT-SVYTWNTKTNKTQLLVEYPTY-----DNAYISCVAWKPR---TTDLAVTNTC--------- 229 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~~~-~i~iw~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~---~~~l~~~~~~--------- 229 (507)
..|+|.|++ ++++...+ .|++++..+++...+..+... .......|+|+|+ +..|.++.+.
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~ 109 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKE 109 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CC
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccc
Confidence 469999998 66666664 799998766665554444310 2456789999996 6666665222
Q ss_pred ---CCcEEEEeCCCc--e-----eEE-EEee-cCccEEEEEe--eCCEEEEEe
Q psy8285 230 ---TEYIDLWHEQEE--R-----LIQ-KLRT-HMHQVIAMCW--NGNLLSCGT 268 (507)
Q Consensus 230 ---dg~i~iwd~~~~--~-----~~~-~~~~-~~~~v~~~~~--~~~~l~~~~ 268 (507)
...|.-++.... + .+. .+.. .......|.| +|.+.++.+
T Consensus 110 ~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 110 LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 235555654321 1 111 1221 1234577888 677666654
No 348
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.75 E-value=3.7 Score=36.94 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=120.8
Q ss_pred eeeeeCCCC-EEEEEc-CCeEEEEECCCCceeEEEecC----CCCCCceEEEEEccC---CCeEEEEe--CCCCcEEEEe
Q psy8285 169 SGLDWGYHD-TLAVAL-DTSVYTWNTKTNKTQLLVEYP----TYDNAYISCVAWKPR---TTDLAVTN--TCTEYIDLWH 237 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~-~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~~--~~dg~i~iwd 237 (507)
..|+|.|++ ++++.. .|.|++++..+++...+..++ . .......|+++|+ +..|.+.- ..++.|.-|.
T Consensus 35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~-g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~ 113 (347)
T 3das_A 35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPS-GEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRML 113 (347)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCB-TTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEE
T ss_pred eEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeec-CCCCceeeEeccccccCCEEEEEEecCCCCEEEEEE
Confidence 469999998 666666 899999987766654443321 1 3567899999996 44555431 2345666666
Q ss_pred CCCc----------eeE-EEEee-cCccEEEEEe--eCCEEEEEec-------------CCeEEEEECCCCC-------c
Q psy8285 238 EQEE----------RLI-QKLRT-HMHQVIAMCW--NGNLLSCGTI-------------GGNILHYDVRTHS-------D 283 (507)
Q Consensus 238 ~~~~----------~~~-~~~~~-~~~~v~~~~~--~~~~l~~~~~-------------dg~i~i~d~~~~~-------~ 283 (507)
...+ +.+ ..+.. .......|.| |+.+.++.+. .|.|.-.+....- .
T Consensus 114 ~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~ 193 (347)
T 3das_A 114 YDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPG 193 (347)
T ss_dssp BCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTT
T ss_pred eCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCC
Confidence 5441 111 12221 1112345677 6776666442 3556555654320 0
Q ss_pred CceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCC---------------CCCCeeeecCCCCCeeEEEEcc
Q psy8285 284 YPTAITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLD---------------AKRPQVNNQCHLSAVKAIAWCP 346 (507)
Q Consensus 284 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~---------------~~~~~~~~~~~~~~v~~~~~~~ 346 (507)
......++.+ ...++|+|++++.++-. ++.=.|--+..+. ...++..+..+......++|..
T Consensus 194 ~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~ 272 (347)
T 3das_A 194 SPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE 272 (347)
T ss_dssp CCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET
T ss_pred CeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc
Confidence 1122234443 45799999988766643 3323333333321 1122333332223556777763
Q ss_pred CCCcEEEEEccCCCCeEEEEeCCCCCe----eeeeec-CCCeEEEEECCCCCeEEEE
Q psy8285 347 WEPTLLATGGGICDQTVRLWNSMNGKE----KCHVKT-DSQVTSILWSEQYRELVTS 398 (507)
Q Consensus 347 ~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~-~~~i~~~~~s~~~~~l~~~ 398 (507)
+ .++...-. .+.|....+..... ...+.. ...+..++..|||..++++
T Consensus 273 -g-~~~~~~l~--~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 273 -G-SVWMAGLR--GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp -T-EEEEEEST--TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred -C-ceeecccc--CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 4 45554432 45565556554432 222322 2578999999998877664
No 349
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.73 E-value=6.8 Score=39.86 Aligned_cols=267 Identities=8% Similarity=0.058 Sum_probs=149.2
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCC---CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTY---DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
.|.++.-..++ +..++. +.|..++..+++.... ..+.. ....|.++...+++..|.++ +. +-+..+|..+++
T Consensus 147 ~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~d~~~~~lWig-t~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFEGI-PLPVHSSQSNLFVNSLLEDTTRQCVWIG-TE-GYLFQYFPSTGQ 222 (758)
T ss_dssp CEEEEEECTTCCEEEEET-TEEEEEETTTTEEEEE-CCCCCTTCSSCCEEEEEEETTTTEEEEE-EE-EEEEEEETTTTE
T ss_pred eEEEEEEcCCCCEEEEeC-CCHhhCccCCCceEEe-cCCCccccccceeEEEEEECCCCEEEEE-EC-CCCeEEcCCCCe
Confidence 35566666666 555554 5688899877664332 22110 12348888888777766666 43 468889987765
Q ss_pred eEEEEeecCccEEEEEee-CCEEEEEecCCeEEEEECCCCCcCceeee--------cCCCceEEEEEcCCCCEEEEEeCC
Q psy8285 243 LIQKLRTHMHQVIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAIT--------REGDVVCGLKWSPNGRYLASGSNN 313 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~d~ 313 (507)
...........|.++..+ ...|..|+. +-+.+++..+.. ...+. -....|.++....+|.+-+....|
T Consensus 223 ~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G 299 (758)
T 3ott_A 223 IKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTP--LQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG 299 (758)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSC--CEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS
T ss_pred EEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCc--EEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc
Confidence 433222223457777774 344555564 457788876543 12221 123458888888887765544345
Q ss_pred cEEEEEcCCCCCCCCeeee-----cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--eeeeee--------
Q psy8285 314 TVKIWDFRQLDAKRPQVNN-----QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EKCHVK-------- 378 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~-------- 378 (507)
+.++..... ...... ......|.++.-..+|. +.+... + -+..++..+++ ....+.
T Consensus 300 -l~~~~~~~~---~~~~~~~~~~~~~~~~~v~~i~~D~~g~-lWiGt~---~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l 370 (758)
T 3ott_A 300 -ISLSRYNSA---LQFIPISQITGTGDGNQFYSLFRDSKGF-YWFGGA---N-GLIRFTDPAGERHDAIWYRMGDKTYPL 370 (758)
T ss_dssp -EEEECCCC----CEEEEHHHHSCSCCCCBEEEEEECTTCC-EEEEET---T-EEEEESCTTSSCCCCEEECTTCSSSCC
T ss_pred -ccccccCCc---eeEEecccCCCCCCCceEEEEEEcCCCC-EEEeeC---C-cceeecccccccceeEEeccCCcCCCC
Confidence 544432211 111110 01234688888877774 443222 4 46667655432 111121
Q ss_pred cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee-c-----cccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 379 TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK-I-----HQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 379 ~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~-~-----~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
....|.++.-.++|+..+. + ++-|..||..+++...-.. . ....|.++...+++++.+ |+..+-|.+++
T Consensus 371 ~~~~v~~i~~d~~g~lWig---t-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~ 445 (758)
T 3ott_A 371 SHNRIRHIYEDKEQQLWIA---T-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVD 445 (758)
T ss_dssp SCSCEEEEEECTTSCEEEE---E-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEE
T ss_pred CCCceEEEEECCCCCEEEE---e-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEc
Confidence 1235888888888876654 3 4579999987765432111 1 124578888877776444 66555677887
Q ss_pred cC
Q psy8285 453 CF 454 (507)
Q Consensus 453 ~~ 454 (507)
..
T Consensus 446 ~~ 447 (758)
T 3ott_A 446 KH 447 (758)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.45 E-value=5.1 Score=34.90 Aligned_cols=221 Identities=16% Similarity=0.130 Sum_probs=119.1
Q ss_pred eeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 168 TSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 168 i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
|..++-.....++.. ++.|+.|-.......-+... ....|..++.... ..++. . ||.|..|-......+..-
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~---~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAA---TQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGG---GGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCcc---CCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 445665555666666 99999997654221111111 2335666665432 33333 4 888998875543221111
Q ss_pred eecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCC
Q psy8285 248 RTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKR 327 (507)
Q Consensus 248 ~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~ 327 (507)
..-...|..++......+.-. +|.|+.|-......... .......|..++...+...++ . |+.|+.|-......
T Consensus 98 ~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~gq-- 171 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDNYFGQ-- 171 (282)
T ss_dssp GGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECCTTST--
T ss_pred cccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCEEEEE-E-CCEEEEecCCCCCC--
Confidence 112346888888666666667 99999998775432211 112234566666554433333 2 78899887654311
Q ss_pred CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee-eeecCCCeEEEEECCCCCeEEEEeccCCCeE
Q psy8285 328 PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC-HVKTDSQVTSILWSEQYRELVTSHGKQDCSL 406 (507)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i 406 (507)
+.........|..++.... +.++. . |+.++.|-....-.+- .......|..++-... ..++. . ||.|
T Consensus 172 -lg~p~~~~~~v~~i~~G~~--hs~al-~---~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-h~~al---~-~g~v 239 (282)
T 3qhy_B 172 -TTVPAEAQSGVDDVAGGIF--HSLAL-K---DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSLAL---K-NGKV 239 (282)
T ss_dssp -TSCCGGGGSSEEEEEECSS--EEEEE-E---TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEEEE---E-TTEE
T ss_pred -CCCceecCCCeEEEEecCC--EEEEE-E---CCeEEEEECCCCCCCCCCcccCCCceEEEcCCC-EEEEE---E-CCEE
Confidence 1111112346777776543 34444 4 8999999754432211 1111234555554322 22333 3 8889
Q ss_pred EEEeCCCc
Q psy8285 407 KMWEYPRL 414 (507)
Q Consensus 407 ~v~d~~~~ 414 (507)
+.|-....
T Consensus 240 ~~wG~n~~ 247 (282)
T 3qhy_B 240 IAWGSSRT 247 (282)
T ss_dssp EEESTTCC
T ss_pred EEecCCCC
Confidence 99876543
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.22 E-value=7.8 Score=36.55 Aligned_cols=241 Identities=8% Similarity=0.021 Sum_probs=118.6
Q ss_pred CceEEEEEccCCC-eEEEEeCCCCcEEEEeCCCce---eEEEEe---------ecCccEEEEEeeC------CEEEEEec
Q psy8285 209 AYISCVAWKPRTT-DLAVTNTCTEYIDLWHEQEER---LIQKLR---------THMHQVIAMCWNG------NLLSCGTI 269 (507)
Q Consensus 209 ~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~~~~~---~~~~~~---------~~~~~v~~~~~~~------~~l~~~~~ 269 (507)
.....|+|.|++. .|+++ ...|.|++++..... .+..+. ........|+++. .+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFIL-EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEE-ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEE-eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 3468999999996 56666 688999999754321 222221 1145678899843 33333322
Q ss_pred C------------CeEEEEECCCC--C-----cCcee--ee--cCCCceEEEEEcCCCCEEEEEeC-Cc-----------
Q psy8285 270 G------------GNILHYDVRTH--S-----DYPTA--IT--REGDVVCGLKWSPNGRYLASGSN-NT----------- 314 (507)
Q Consensus 270 d------------g~i~i~d~~~~--~-----~~~~~--~~--~~~~~v~~~~~~~~~~~l~~~~d-~~----------- 314 (507)
+ ..|.-|.+... . ..... .. .....-..|+|.|||.+.++.+| +.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~ 172 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGL 172 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCc
Confidence 1 14555666432 0 01111 11 11223578999999998887665 31
Q ss_pred ----EEEEEcCCCCC-------C------------CCeeeecCCCCCeeEEEEccCCC----c-EEEEEccCCC--CeEE
Q psy8285 315 ----VKIWDFRQLDA-------K------------RPQVNNQCHLSAVKAIAWCPWEP----T-LLATGGGICD--QTVR 364 (507)
Q Consensus 315 ----i~i~d~~~~~~-------~------------~~~~~~~~~~~~v~~~~~~~~~~----~-~~~~~~~~~d--~~i~ 364 (507)
=+|+.+..... . ....--.+|.+ ...++|+|... . .+..+....+ ..-.
T Consensus 173 ~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 173 SDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp CSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 13443332210 0 01111223443 45789999732 2 2322210001 1123
Q ss_pred EEeCCCC------CeeeeeecC--CCeEEEEECCC-------CCeEEEEeccCCCeEEEEeCCCcc---EEEEe-ec---
Q psy8285 365 LWNSMNG------KEKCHVKTD--SQVTSILWSEQ-------YRELVTSHGKQDCSLKMWEYPRLH---LIEEL-KI--- 422 (507)
Q Consensus 365 i~d~~~~------~~~~~~~~~--~~i~~~~~s~~-------~~~l~~~~g~~d~~i~v~d~~~~~---~~~~~-~~--- 422 (507)
|..+..+ .++..+..+ ..+..+.|-.. +.+++. ...+.|....+.... ....+ .+
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~---~~~g~i~~~~~~~~~~~~~~~~~~~g~~~ 328 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFG---DRNGNFLTLQQSPVTKQWQEKPLCLGTSG 328 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEE---ETTSCEEEEEC-----CCEEEEECEEETT
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEe---cCCCcEEEEEeCCCCceeeEEEeecCCcc
Confidence 3333322 244455444 35677777432 345554 233666666654321 11112 11
Q ss_pred -----cccceeEEEECCCCCEEEEEeCC-----CcEEEEecC
Q psy8285 423 -----HQERILSAVLSPDQTCVAAASAD-----ETISIWNCF 454 (507)
Q Consensus 423 -----~~~~i~~~~~s~~~~~l~s~~~d-----g~i~iw~~~ 454 (507)
...++.++...|||.++++.... ..=+||.+.
T Consensus 329 ~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 329 SCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp SSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred cccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 23578999999999987776521 233677775
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.60 E-value=13 Score=34.97 Aligned_cols=107 Identities=9% Similarity=0.035 Sum_probs=61.5
Q ss_pred CCeeEEEEccCCC-cEEEEEccCCCCeEEEEeCCCCC---eeeeee-----c-----CCCeEEEEECCC---CCeEEEEe
Q psy8285 337 SAVKAIAWCPWEP-TLLATGGGICDQTVRLWNSMNGK---EKCHVK-----T-----DSQVTSILWSEQ---YRELVTSH 399 (507)
Q Consensus 337 ~~v~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~-----~-----~~~i~~~~~s~~---~~~l~~~~ 399 (507)
...+.|+|.|++. +++++.. .|.|++++..... .+..+. . ......++++|+ ..+|+++.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er---~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEK---EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEET---TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeC---CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 3567999999985 5777665 8999999754321 222111 1 246789999997 33443321
Q ss_pred cc-CC----------CeEEEEeCCC----------ccEEEEee--ccccceeEEEECCCCCEEEEEeCCC
Q psy8285 400 GK-QD----------CSLKMWEYPR----------LHLIEELK--IHQERILSAVLSPDQTCVAAASADE 446 (507)
Q Consensus 400 g~-~d----------~~i~v~d~~~----------~~~~~~~~--~~~~~i~~~~~s~~~~~l~s~~~dg 446 (507)
.. .+ ..|.-|.+.. .+.+..+. .....-..|+|.|||.+.++.++.+
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 11 11 1444465532 12333332 1122357899999998777766543
No 353
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=86.28 E-value=20 Score=32.83 Aligned_cols=268 Identities=12% Similarity=0.118 Sum_probs=121.4
Q ss_pred EEEEEcCCeEEEEECCC-Cc-------eeEE-EecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-------
Q psy8285 178 TLAVALDTSVYTWNTKT-NK-------TQLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE------- 241 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~-~~-------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~------- 241 (507)
+++...||.|+.|-... ++ .... ..........+..++-. ....++. ..||.|..|-....
T Consensus 13 ~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~l-~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 13 NLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGG--EQTLFAV-TADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp --------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEE--TTEEEEE-ETTSCEEEEECCGGGTTSSSS
T ss_pred ceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeC--CCeEEEE-cCCCcEEEEECCCCCCCCCCC
Confidence 66677889999996543 21 1111 11100011234455432 3344444 58999999964321
Q ss_pred -e---eEEEEee-cCccEE--EEEeeCCEEEEEecCCeEEEEECCCCCcC----------ceeeec-CCCceEEEEEcCC
Q psy8285 242 -R---LIQKLRT-HMHQVI--AMCWNGNLLSCGTIGGNILHYDVRTHSDY----------PTAITR-EGDVVCGLKWSPN 303 (507)
Q Consensus 242 -~---~~~~~~~-~~~~v~--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~-~~~~v~~~~~~~~ 303 (507)
+ ....+.. ....+. .++......+.-..+|.|+.|-....... ...+.. ....|..++....
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~ 169 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA 169 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS
T ss_pred cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC
Confidence 1 1111211 122233 33335667777788999999976532110 111111 1224555554322
Q ss_pred CCEEEEEeCCcEEEEEcCCCC------CCC---CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-C-
Q psy8285 304 GRYLASGSNNTVKIWDFRQLD------AKR---PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-K- 372 (507)
Q Consensus 304 ~~~l~~~~d~~i~i~d~~~~~------~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~- 372 (507)
..++...+|.|+.|-..... ... +..........|..++......+.++... |+.|+.|-.... +
T Consensus 170 -hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~---~G~v~~wG~n~~GqL 245 (389)
T 3kci_A 170 -HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTD---DDTVWSWGDGDYGKL 245 (389)
T ss_dssp -EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEET---TTEEEEEECCGGGTT
T ss_pred -eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEcc---CCEEEEEeCCCCCCC
Confidence 22333346888888654310 000 00111112235666665432235555554 899999964321 1
Q ss_pred ---------eeeeeec--CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc-----------EEEEeec-cccceeE
Q psy8285 373 ---------EKCHVKT--DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH-----------LIEELKI-HQERILS 429 (507)
Q Consensus 373 ---------~~~~~~~--~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~-----------~~~~~~~-~~~~i~~ 429 (507)
....+.. ...+..++.-.. +.++ -..+|.|+.|-....- ....+.. ....|..
T Consensus 246 G~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~a--lt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ 321 (389)
T 3kci_A 246 GRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVA--LTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIA 321 (389)
T ss_dssp SSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEE--EETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEE
T ss_pred CCCCCCCccccEEecccCCCcEEEEeCCCC--EEEE--EeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEE
Confidence 0111111 123555554332 2233 2468899999653210 1111111 1234666
Q ss_pred EEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 430 AVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 430 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
++.. ....+....||.|+.|=....-+
T Consensus 322 ia~G--~~h~~al~~~G~v~~wG~n~~Gq 348 (389)
T 3kci_A 322 IATG--SLHCVCCTEDGEVYTWGDNDEGQ 348 (389)
T ss_dssp EEEC--SSEEEEEETTCCEEEEECCTTST
T ss_pred EEec--cCeEEEECCCCCEEEeeCCCCCc
Confidence 6553 33455567899999998765433
No 354
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=81.13 E-value=28 Score=30.64 Aligned_cols=189 Identities=13% Similarity=0.026 Sum_probs=103.7
Q ss_pred eCCEEEEEecCCeEEEEECCCCCcCce--------eeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC-----
Q psy8285 260 NGNLLSCGTIGGNILHYDVRTHSDYPT--------AITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDA----- 325 (507)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~----- 325 (507)
+..++++.+.+|.|+-..+........ .+.. .+.+..+........++..+ .|.++-+....-..
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 456788999999999887654321110 1122 23344444443444455555 58877766542100
Q ss_pred -CCC---eeeecCCCCCeeEEEEcc---CCCcEEEEEccCCCCeEEEEeCCC-------CCeeeeeecCCCeEEEEECCC
Q psy8285 326 -KRP---QVNNQCHLSAVKAIAWCP---WEPTLLATGGGICDQTVRLWNSMN-------GKEKCHVKTDSQVTSILWSEQ 391 (507)
Q Consensus 326 -~~~---~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~i~~~~~s~~ 391 (507)
..+ ...+. ....|..+...+ ++.+++.... .|.++...+.. |.....+.....+..+....+
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~---~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTA---SGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEET---TSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeC---CCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 011 11122 233455554332 3445666655 88888877632 222223334456666665555
Q ss_pred CCeEEEEeccCCCeEEEEeCCC---------ccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPR---------LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~---------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+..++. .+.+|.+..+.... |.....+.. ...|..+..-.++..+++.+..|..+..++..-
T Consensus 162 ~~~i~l--~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 162 DEKVIC--LSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp TCEEEE--EETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred CCEEEE--EeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 556666 56789888887643 122222332 345566655555667888999999999988653
No 355
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=80.26 E-value=35 Score=31.15 Aligned_cols=233 Identities=15% Similarity=0.163 Sum_probs=119.3
Q ss_pred eeeeCCCCEEEEEcCCeEEEEECCCC-c--------eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 170 GLDWGYHDTLAVALDTSVYTWNTKTN-K--------TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 170 ~~~~s~~~~~~~~~~~~i~iw~~~~~-~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
.++-.....++...+|.|+.|-.... + ......++......+..++.+......++. ..+|.|+.|-...
T Consensus 57 ~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al-~~~G~v~~wG~n~ 135 (389)
T 3kci_A 57 QLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLAL-SSEGEVYSWGEAE 135 (389)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEE-ETTSCEEEEECCG
T ss_pred EEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEE-cCCCCEEEEeCCC
Confidence 34444455778889999999964331 1 111111111023345556666656666666 7899999995432
Q ss_pred c-----------eeEEEEee-cCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcC----------ceeee-cCCCceEE
Q psy8285 241 E-----------RLIQKLRT-HMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDY----------PTAIT-REGDVVCG 297 (507)
Q Consensus 241 ~-----------~~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~-~~~~~v~~ 297 (507)
. .....+.. ....|..++......++...+|.|+.|-....... ..... .....|..
T Consensus 136 ~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ 215 (389)
T 3kci_A 136 DGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVD 215 (389)
T ss_dssp GGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEE
Confidence 1 11112222 22367888887777778888999999976542110 01111 12234666
Q ss_pred EEEcCCCCE-EEEEeCCcEEEEEcCCCCCC-----CC---eeeecC-CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEe
Q psy8285 298 LKWSPNGRY-LASGSNNTVKIWDFRQLDAK-----RP---QVNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 298 ~~~~~~~~~-l~~~~d~~i~i~d~~~~~~~-----~~---~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
++......+ ++...++.|+.|-....... .. ...+.. ....|..++.... +.++... ++.|+.|=
T Consensus 216 ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt~---~G~v~~wG 290 (389)
T 3kci_A 216 IACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVALTK---SGAVYTWG 290 (389)
T ss_dssp EEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEEEET---TSCEEEEE
T ss_pred EEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEEEEeC---CCeEEEEe
Confidence 665432233 44444699999865431000 00 011111 1224666665432 3444444 89999996
Q ss_pred CCCCCe-----------eeeeec--CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 368 SMNGKE-----------KCHVKT--DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 368 ~~~~~~-----------~~~~~~--~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
....-. ...+.. ...|..++.-. .+.++ -..||.|+.|-..
T Consensus 291 ~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~a--l~~~G~v~~wG~n 344 (389)
T 3kci_A 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVC--CTEDGEVYTWGDN 344 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEE--EETTCCEEEEECC
T ss_pred CCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEE--ECCCCCEEEeeCC
Confidence 532110 111111 12455555432 22333 2468888888754
No 356
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=79.51 E-value=36 Score=30.91 Aligned_cols=188 Identities=14% Similarity=0.133 Sum_probs=103.4
Q ss_pred CeEEEEECCCC--ceeEEEecCCC---CCCceEEEEEc---cC----CCeEEEEeCCCCcEEEEeCCCceeEEEEeecCc
Q psy8285 185 TSVYTWNTKTN--KTQLLVEYPTY---DNAYISCVAWK---PR----TTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMH 252 (507)
Q Consensus 185 ~~i~iw~~~~~--~~~~~~~~~~~---~~~~v~~~~~~---~~----~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 252 (507)
-.|.+||+.++ +..+.+.++.. ....+..+.+. |+ +.++.++-...+.|.|+|+.+++..+.+..+..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 36888999998 88877776420 24567888887 22 345555634577899999999988776632111
Q ss_pred cEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC----CCEEEEEeCCcEEEEEc-----CCC
Q psy8285 253 QVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN----GRYLASGSNNTVKIWDF-----RQL 323 (507)
Q Consensus 253 ~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~d~~i~i~d~-----~~~ 323 (507)
+ +..... .-+|.-.- -...+..++++|+ ++.|....=..-++|.+ +..
T Consensus 203 p------d~~~~~--~i~G~~~~---------------~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~ 259 (381)
T 3q6k_A 203 A------ERPTKF--DYGGKEYE---------------FKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQK 259 (381)
T ss_dssp C------CSCEEE--EETTEEEE---------------ECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSST
T ss_pred c------ccCcce--EECCEEeE---------------eccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCc
Confidence 1 100000 00121110 1345888999998 78887776322234433 222
Q ss_pred CCCCCeeeecCCC--CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-C---CeeeeeecC---CCeEEEEECCCCCe
Q psy8285 324 DAKRPQVNNQCHL--SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-G---KEKCHVKTD---SQVTSILWSEQYRE 394 (507)
Q Consensus 324 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~---~~~~~~~~~---~~i~~~~~s~~~~~ 394 (507)
.....++.+-... ..-..++..+....++.+--+ ...|..|+..+ . +....+... ..+..+.+.++|..
T Consensus 260 ~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~--~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~L 337 (381)
T 3q6k_A 260 GGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEAN--TKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGL 337 (381)
T ss_dssp TCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESS--SSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCE
T ss_pred chhhceEEeeecCCCCCcceEEEeCCCCeEEEEecc--CCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeE
Confidence 2122232222111 233456665333366666554 88999999875 1 122222222 34677777766654
Q ss_pred EEE
Q psy8285 395 LVT 397 (507)
Q Consensus 395 l~~ 397 (507)
.+.
T Consensus 338 wv~ 340 (381)
T 3q6k_A 338 WFM 340 (381)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=71.25 E-value=88 Score=31.34 Aligned_cols=236 Identities=8% Similarity=0.047 Sum_probs=123.1
Q ss_pred eEEEE-EccCCCeEEEEeCCC----CcEEEEeCCCceeEEE-Ee-ecCc------cEEEEEe-eCCEEEEEec-------
Q psy8285 211 ISCVA-WKPRTTDLAVTNTCT----EYIDLWHEQEERLIQK-LR-THMH------QVIAMCW-NGNLLSCGTI------- 269 (507)
Q Consensus 211 v~~~~-~~~~~~~l~~~~~~d----g~i~iwd~~~~~~~~~-~~-~~~~------~v~~~~~-~~~~l~~~~~------- 269 (507)
...+. ++|++++++.+-+.. ..++++|+.+++.+.. +. .-.. ....++| +++.+..+..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 44555 889999888763333 3799999999887631 11 0000 1134477 5555555421
Q ss_pred ----CCeEEEEECCCCCcC-ceeeecCCCce-EEEEEcCCCC-----EEEEEe-C---CcEEEEEcCCCCCCCCeeeecC
Q psy8285 270 ----GGNILHYDVRTHSDY-PTAITREGDVV-CGLKWSPNGR-----YLASGS-N---NTVKIWDFRQLDAKRPQVNNQC 334 (507)
Q Consensus 270 ----dg~i~i~d~~~~~~~-~~~~~~~~~~v-~~~~~~~~~~-----~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~~ 334 (507)
...|+.|.+-+.... ...+......+ .....+++++ .+++.+ + ..+++.|..... ..+..+..
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ 288 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKN--LKLQKINM 288 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSS--CEEEECCS
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCC--CcceEeec
Confidence 246888888765322 22333333332 3455566766 244433 3 456666655321 12222221
Q ss_pred CCCCeeEEEEccCCCcEEEEEcc--------CCCCeEEEEeCCCCC-------eeee-eecC--CCeEEEEECCCCCeEE
Q psy8285 335 HLSAVKAIAWCPWEPTLLATGGG--------ICDQTVRLWNSMNGK-------EKCH-VKTD--SQVTSILWSEQYRELV 396 (507)
Q Consensus 335 ~~~~v~~~~~~~~~~~~~~~~~~--------~~d~~i~i~d~~~~~-------~~~~-~~~~--~~i~~~~~s~~~~~l~ 396 (507)
... ..+..+.++ .+++.... ...+.|...|+.++. .... +... ..+..+.|..+ ..++
T Consensus 289 ~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 289 PSD--ATLQGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp CTT--CEEEEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred CCc--ceEeeeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 221 123344455 44442211 126678899987642 1222 3332 45778888876 3444
Q ss_pred EEeccCCC--eEEEEeCCCcc-EEEE-eecc-ccceeEEEECCCCC-EEEEEeC---CCcEEEEecC
Q psy8285 397 TSHGKQDC--SLKMWEYPRLH-LIEE-LKIH-QERILSAVLSPDQT-CVAAASA---DETISIWNCF 454 (507)
Q Consensus 397 ~~~g~~d~--~i~v~d~~~~~-~~~~-~~~~-~~~i~~~~~s~~~~-~l~s~~~---dg~i~iw~~~ 454 (507)
+ ...++ .|.++++.+++ .... +.-. .+.+.....++++. ++++.+. -+.+..+++.
T Consensus 365 ~--~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 A--TYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp E--EEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred E--EEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 4 34555 57778776654 2222 2211 24566666777765 4444433 3668888776
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.23 E-value=78 Score=33.08 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=32.1
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
..+.+++..++..++++ -+.|+.+|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lft--l~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVM--LSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEE--EETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEE--EECCCEEEEEECCCCCeEeee
Confidence 35677888888889988 568999999999999988765
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.58 E-value=30 Score=36.13 Aligned_cols=39 Identities=5% Similarity=0.079 Sum_probs=33.0
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
..+.+++..++..++++. +.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl-~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVML-SLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEE-ETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEE-ECCCEEEEEECCCCCeEeeec
Confidence 356788888888899998 999999999999998877643
No 360
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=64.24 E-value=22 Score=34.63 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=41.5
Q ss_pred eeeeCCCCEEEEEcCC--------------eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEE
Q psy8285 170 GLDWGYHDTLAVALDT--------------SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVT 226 (507)
Q Consensus 170 ~~~~s~~~~~~~~~~~--------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 226 (507)
-|.+++.+.|-++.|+ .+.+.+..+++..++...+ ....++.++|+||++.|++.
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P--~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP--IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC--TTCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC--CCccCcCeeECCCCCEEEEE
Confidence 4788888844444442 4677777788887777765 56889999999999988876
No 361
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=63.37 E-value=92 Score=28.64 Aligned_cols=268 Identities=14% Similarity=0.075 Sum_probs=130.0
Q ss_pred CCCCEEEEEcCCeEEEEECCC-C---------ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-
Q psy8285 174 GYHDTLAVALDTSVYTWNTKT-N---------KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER- 242 (507)
Q Consensus 174 s~~~~~~~~~~~~i~iw~~~~-~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~- 242 (507)
..+..++...+|.|+.|-... + .......++ ....|..++.. +...++. ..||.|+.|-.....
T Consensus 32 g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~--~l~~v~~va~G--~~h~~~l-~~~G~v~~wG~n~~Gq 106 (423)
T 3mvd_K 32 HLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVA--GIPDAVDISAG--GMHNLVL-TKSGDIYSFGCNDEGA 106 (423)
T ss_dssp CCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECC--SCSSEEEEEEC--SSEEEEE-ETTSCEEEEECCSSST
T ss_pred CCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEcc--CCCCceEEeeC--CCeEEEE-eCCCeEEEeECCCCcC
Confidence 333344455777788774332 1 111122222 23446666654 3444444 689999999643211
Q ss_pred -----------eEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEEC--CCCCcC--------ce-eeecCCCceEEEEE
Q psy8285 243 -----------LIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDV--RTHSDY--------PT-AITREGDVVCGLKW 300 (507)
Q Consensus 243 -----------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~--------~~-~~~~~~~~v~~~~~ 300 (507)
.....-.....|..++......++-..+|.|+.|-. ...... .. ........|..++.
T Consensus 107 LG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~ 186 (423)
T 3mvd_K 107 LGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS 186 (423)
T ss_dssp TCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEE
T ss_pred CCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEec
Confidence 000111123467788877777777788999999986 321100 00 11112334655554
Q ss_pred cCCCCEEEEEeCCcEEEEEcCCCCC--------------------CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC
Q psy8285 301 SPNGRYLASGSNNTVKIWDFRQLDA--------------------KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 360 (507)
Q Consensus 301 ~~~~~~l~~~~d~~i~i~d~~~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d 360 (507)
..+ ..++...+|.|+.|-...... ..+..........|..++.... ..++.... +
T Consensus 187 G~~-hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~--~~~~~~~~--~ 261 (423)
T 3mvd_K 187 GAD-HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY--CTFMRESQ--T 261 (423)
T ss_dssp CSS-EEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT--EEEEEETT--T
T ss_pred CCC-eEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCc--EEEEEECC--C
Confidence 422 233334468899886433200 0111111112234555554422 23333222 8
Q ss_pred CeEEEEeCCCCCe-----------eeeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc------------cE
Q psy8285 361 QTVRLWNSMNGKE-----------KCHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL------------HL 416 (507)
Q Consensus 361 ~~i~i~d~~~~~~-----------~~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~------------~~ 416 (507)
+.|+.|-....-. ...... ...|..++.-. .+.++ -..+|.|+.|-.... ..
T Consensus 262 g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~--~ht~a--lt~~G~v~~wG~n~~GqLG~g~~~~~~~~ 337 (423)
T 3mvd_K 262 QVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ--HHTVI--LTTDLKCSVVGRPEYGRLGLGDVKDVVEK 337 (423)
T ss_dssp CCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS--SEEEE--EETTCCEEEEECCGGGTTCSSSCCSCEEE
T ss_pred CeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc--CeEEE--EeCCCcEEEEECCCCCCCCCCCccccccC
Confidence 8888886432110 011111 23455555432 22233 236888999864321 11
Q ss_pred EEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 417 IEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 417 ~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
...+..-...|..++... ...+....||.|+.|=....-
T Consensus 338 p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~wG~n~~G 376 (423)
T 3mvd_K 338 PTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSWGSGVNN 376 (423)
T ss_dssp EEECTTCCSCEEEEEEET--TEEEEEETTSCEEEEECCTTS
T ss_pred ceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEECCCCCC
Confidence 122222223566666543 344445789999999766543
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=63.29 E-value=72 Score=27.39 Aligned_cols=154 Identities=15% Similarity=0.121 Sum_probs=81.3
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEe---CCCceeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCC
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWH---EQEERLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHS 282 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd---~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~ 282 (507)
+.+..+.-.....+|+.. +.+|.++--. +....... +-.....|..+-. +...++..+.+|.++...+....
T Consensus 24 D~~~~~~~~~t~~~ll~f-T~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLV-SNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEE-ETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEE-cCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 345555444445556555 6788766543 33221111 1223445555532 45789999999999998876432
Q ss_pred -----cCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC------CCCeeeecCCCCCeeEEEEccCCCc
Q psy8285 283 -----DYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDA------KRPQVNNQCHLSAVKAIAWCPWEPT 350 (507)
Q Consensus 283 -----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~ 350 (507)
.....+. ..+.+..+........++..+ +|.+..++...-.. ......+. ....|..+...+++..
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE
Confidence 0011122 234555555554555555555 58888887643200 01111222 2345656555555556
Q ss_pred EEEEEccCCCCeEEEEeCC
Q psy8285 351 LLATGGGICDQTVRLWNSM 369 (507)
Q Consensus 351 ~~~~~~~~~d~~i~i~d~~ 369 (507)
+++... .|.++...+.
T Consensus 180 ll~~T~---~G~~kr~~~~ 195 (276)
T 3no0_A 180 LLVITA---KGRVKKISHE 195 (276)
T ss_dssp EEEEET---TSCEEEEEGG
T ss_pred EEEEeC---CCcEEEeEHH
Confidence 666554 7777777653
No 363
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=63.17 E-value=78 Score=27.71 Aligned_cols=231 Identities=10% Similarity=0.052 Sum_probs=116.6
Q ss_pred CCCeEEEEeCCCCcEEEEeCCCceeEE---------EEeecCccEEEEEe-eCCEEEEEecCCeEEEEEC---CCCCc--
Q psy8285 219 RTTDLAVTNTCTEYIDLWHEQEERLIQ---------KLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDV---RTHSD-- 283 (507)
Q Consensus 219 ~~~~l~~~~~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~---~~~~~-- 283 (507)
+...+++. +.+|.|+--.+.+.+... .+.....-+..+.. ..+.|+..+..|.++-+.. .....
T Consensus 2 ~e~~~v~~-T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTL-SHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEE-ETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEE-eCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 45566777 889999877765432211 11122222222222 4667777777888665543 32211
Q ss_pred ---Cc-eee-ecCCCceEEEEEc---CCCCEEEEEe-CCcEEEEEcCCCCCCC--C--eeeecCCCCCeeEEEEccCCCc
Q psy8285 284 ---YP-TAI-TREGDVVCGLKWS---PNGRYLASGS-NNTVKIWDFRQLDAKR--P--QVNNQCHLSAVKAIAWCPWEPT 350 (507)
Q Consensus 284 ---~~-~~~-~~~~~~v~~~~~~---~~~~~l~~~~-d~~i~i~d~~~~~~~~--~--~~~~~~~~~~v~~~~~~~~~~~ 350 (507)
+. ..+ ......|..+... +++.+++..+ +|.++.-.+....... - ...+... +.+..+........
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 00 011 1233445555432 3455666666 5999988775321111 1 1122223 55555555444446
Q ss_pred EEEEEccCCCCeEEEEeCCCC---------CeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc-------
Q psy8285 351 LLATGGGICDQTVRLWNSMNG---------KEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL------- 414 (507)
Q Consensus 351 ~~~~~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~------- 414 (507)
+++... +|.+..++...- .....+.....+.++...+++..+++ .+..|.++-.++...
T Consensus 160 i~l~T~---~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~--~T~~G~~Kr~~~~e~~~~~Rg~ 234 (307)
T 1zi0_A 160 VMLFSA---EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILT--ATQNGYGKRTAVAEYPTKSRAT 234 (307)
T ss_dssp EEEEET---TSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEE--EETTSEEEEECGGGSCCCCTTS
T ss_pred EEEECC---CCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEE--EEcCCceEEEEHHHhccCCCCC
Confidence 666665 788777775321 11122333456777766556666777 567888888776321
Q ss_pred c--EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 415 H--LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 415 ~--~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+ ....+....+.+-.+....+...++..+.+|.+.-+++..-
T Consensus 235 kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 235 KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp CCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred CCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 1 11122222244444433333455666777787777766543
No 364
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=62.70 E-value=90 Score=28.29 Aligned_cols=205 Identities=10% Similarity=-0.019 Sum_probs=96.3
Q ss_pred EEEEEcCCeEEEEECCC-C-ceeEEEecCCCCCCceEEEEEcc-CCCeEEEEeCCCC----cEEEEeCCCceeEEEEee-
Q psy8285 178 TLAVALDTSVYTWNTKT-N-KTQLLVEYPTYDNAYISCVAWKP-RTTDLAVTNTCTE----YIDLWHEQEERLIQKLRT- 249 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~-~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg----~i~iwd~~~~~~~~~~~~- 249 (507)
+++++..| +.+++... + ......... ....|.+|++.| +...|.++ ...| .|...+ ..++.-..+..
T Consensus 25 l~vgt~~G-l~~~~~~~~g~~W~~~~~~~--~~~~v~~i~~dp~~~~~l~~g-~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 25 LLVATIKG-AWFLASDPARRTWELRGPVF--LGHTIHHIVQDPREPERMLMA-ARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp EEEEETTE-EEEEEECTTSCSEEEEEEES--TTSEEEEEEECSSSTTCEEEE-EEC--CCEEEEEES-STTSCCEECSBC
T ss_pred EEEEecCc-eEEEECCCCCCCceECCccC--CCCceEEEEECCCCCCeEEEE-ecCCCCCccEEEeC-CCCCCceECCcc
Confidence 66666555 66666543 2 333321111 456799999998 23344444 3444 344332 22322222211
Q ss_pred -------------cCccEEEEEee----CCEEEEEecCCeEEEEECCCCCcCceeee-------------------cCCC
Q psy8285 250 -------------HMHQVIAMCWN----GNLLSCGTIGGNILHYDVRTHSDYPTAIT-------------------REGD 293 (507)
Q Consensus 250 -------------~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~~ 293 (507)
....|.++.++ ...+.+++..+.|...+-.... -..+. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~t--W~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGAS--WEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSB--CEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCC--eEECcCccCCccccccccccccCCCCCC
Confidence 11246778774 5677777766666554322211 11111 1224
Q ss_pred ceEEEEEcCC-CCEEEEE-eCCcEEEEEcCCCCCCCCeeeecC-----C--------CCCeeEEEEccCCCcEEEEEccC
Q psy8285 294 VVCGLKWSPN-GRYLASG-SNNTVKIWDFRQLDAKRPQVNNQC-----H--------LSAVKAIAWCPWEPTLLATGGGI 358 (507)
Q Consensus 294 ~v~~~~~~~~-~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~-----~--------~~~v~~~~~~~~~~~~~~~~~~~ 358 (507)
.+.++.+.|. ...+..+ .++.|...+-. + +....... + ...+.++.+.|.....+..+.
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G---~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-- 251 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFESTDA-G---TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-- 251 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEESST-T---SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEECCC-C---CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--
Confidence 5788999873 3334444 35444433211 2 11111110 0 124889999987434444444
Q ss_pred CCCeEEEEeCCCCCeeeeeec--C----CCeEEEEECCC-CCeEEE
Q psy8285 359 CDQTVRLWNSMNGKEKCHVKT--D----SQVTSILWSEQ-YRELVT 397 (507)
Q Consensus 359 ~d~~i~i~d~~~~~~~~~~~~--~----~~i~~~~~s~~-~~~l~~ 397 (507)
.+.|...+ ..++.-..+.. . ..+..+.++|. ...|.+
T Consensus 252 -~~gl~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~ 295 (394)
T 3b7f_A 252 -HCGIYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWV 295 (394)
T ss_dssp -TTEEEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEE
T ss_pred -CCeEEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEE
Confidence 44455444 23333222221 1 23567888763 344444
No 365
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=62.66 E-value=26 Score=34.09 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=42.4
Q ss_pred CeeEEEEccCCCcEEEEEccC---------CCCeEEEEeCCCCCeeeeeecC--CCeEEEEECCCCCeEEEE
Q psy8285 338 AVKAIAWCPWEPTLLATGGGI---------CDQTVRLWNSMNGKEKCHVKTD--SQVTSILWSEQYRELVTS 398 (507)
Q Consensus 338 ~v~~~~~~~~~~~~~~~~~~~---------~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~ 398 (507)
..-.|+|+|.|..++..-++. ....+.+.+..+++..+.+..+ .+++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 456799999996444433210 1235667777778776666554 689999999999998874
No 366
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=61.32 E-value=99 Score=28.30 Aligned_cols=275 Identities=10% Similarity=0.109 Sum_probs=137.2
Q ss_pred eeeeeeCCCCEEEEEcCCeEEEEECCC-Cc--------eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 168 TSGLDWGYHDTLAVALDTSVYTWNTKT-NK--------TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 168 i~~~~~s~~~~~~~~~~~~i~iw~~~~-~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
|..++-.....++...++.|+.|-... ++ ......+.......|..++...+. .++.. ..++.|+.|-.
T Consensus 18 v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~h-t~al~-~~gg~v~~wG~ 95 (406)
T 4d9s_A 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADH-TVAYS-QSGMEVYSWGW 95 (406)
T ss_dssp EEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSE-EEEEE-TTTTEEEEEEC
T ss_pred eEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcce-EEEEE-CCCCEEEEEcC
Confidence 445666666688888999999997543 11 111111111023467777765332 33333 33459999954
Q ss_pred CCc---------eeE--EEEee-cCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcC----------ceeeec-CCCce
Q psy8285 239 QEE---------RLI--QKLRT-HMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDY----------PTAITR-EGDVV 295 (507)
Q Consensus 239 ~~~---------~~~--~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~-~~~~v 295 (507)
... ... ..+.. ....|..++......++-..+|.|+.|-....... ...+.. ....|
T Consensus 96 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i 175 (406)
T 4d9s_A 96 GDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRI 175 (406)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCE
T ss_pred CCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcE
Confidence 321 111 11111 23368888887777777888999999986543211 011111 12245
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEEcCCCCCC------CCe--eeec-CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEE
Q psy8285 296 CGLKWSPNGRYLASGSNNTVKIWDFRQLDAK------RPQ--VNNQ-CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 366 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~------~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~ 366 (507)
..++...+ ..++...+|.|+.|-....... ... .... .....|..++.... +.++... ++.|+.|
T Consensus 176 ~~va~G~~-hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~--ht~~l~~---~G~v~~w 249 (406)
T 4d9s_A 176 KMVAAGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR--HTISVSY---SGALYTY 249 (406)
T ss_dssp EEEEECSS-EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS--EEEEEET---TCCEEEE
T ss_pred EEEecCCC-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC--cEEEEcC---CCCEEEe
Confidence 55554322 2233333688988865432100 000 0111 11235666655432 3444444 8899998
Q ss_pred eCCCCCee-----------eeeec--CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc------------cEEEEee
Q psy8285 367 NSMNGKEK-----------CHVKT--DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL------------HLIEELK 421 (507)
Q Consensus 367 d~~~~~~~-----------~~~~~--~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~------------~~~~~~~ 421 (507)
-....-.+ ..+.. ...|..++--. .+.++ -..||.|+.|-.... .+.....
T Consensus 250 G~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~--~hs~a--lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 325 (406)
T 4d9s_A 250 GWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGW--RHTMA--LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRF 325 (406)
T ss_dssp ECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--SEEEE--EETTSCEEEEECCTTSTTCSSSSSCEEEEEEECC
T ss_pred eCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecC--CEEEE--EcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEec
Confidence 64332110 11111 12355554432 23333 246888998864321 1111111
Q ss_pred ccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 422 IHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 422 ~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
.....|..++.. ....+....||.|+.|=....
T Consensus 326 ~~~~~v~~va~G--~~hs~alt~~G~v~~wG~n~~ 358 (406)
T 4d9s_A 326 PDDQKVVQVSCG--WRHTLAVTERNNVFAWGRGTN 358 (406)
T ss_dssp GGGCCEEEEEEC--SSEEEEEETTSCEEEEECCTT
T ss_pred cCCCcEEEEEeC--CCeEEEEeCCCCEEEecCCCC
Confidence 122346666553 345555678999999976543
No 367
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=61.20 E-value=32 Score=33.16 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=40.6
Q ss_pred eeeeeeCCCC-EEEEEcC-------------CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEE
Q psy8285 168 TSGLDWGYHD-TLAVALD-------------TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVT 226 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~-------------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 226 (507)
-+-|.+.+++ +..+... ..++.++..+++...+...+ ....++.++|+||++.|+++
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P--~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP--IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC--TTCEEEEEEECTTSSEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC--CCccccCCEECCCCCEEEEE
Confidence 3458888888 4333321 26778888888877766543 34679999999999999887
No 368
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=59.50 E-value=43 Score=32.31 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=43.7
Q ss_pred CCeeEEEEccCCCcEEEEEccC---------CCCeEEEEeCCCCCeeeeeecC--CCeEEEEECCCCCeEEEE
Q psy8285 337 SAVKAIAWCPWEPTLLATGGGI---------CDQTVRLWNSMNGKEKCHVKTD--SQVTSILWSEQYRELVTS 398 (507)
Q Consensus 337 ~~v~~~~~~~~~~~~~~~~~~~---------~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~ 398 (507)
.....|.|.++|..++.+.... ....+..++..+++....+... .+++.++|+||++.|++.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 4567899999985444443210 0226777888788876666543 579999999999999885
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.12 E-value=5.6 Score=42.62 Aligned_cols=39 Identities=5% Similarity=0.039 Sum_probs=30.1
Q ss_pred ceeeeeeccCcceeeeccccccccceeeecccCCcceeeeec
Q psy8285 8 AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT 49 (507)
Q Consensus 8 ~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~ 49 (507)
.|.+++..++.++++ +-+ .|+++||||+.+|+++.+...
T Consensus 239 ~~vs~~~~~~~~~lf-tL~--~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLV-MLS--LDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEE-EEB--TTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEE-EEe--CCCEEEEEECCCCCeEEeech
Confidence 455666677778744 444 699999999999999988663
No 370
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=56.71 E-value=1e+02 Score=27.01 Aligned_cols=187 Identities=10% Similarity=0.075 Sum_probs=100.2
Q ss_pred cCCCeEEEEeCCCCcEEEEeCCCceeE-------EEEe-ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC---
Q psy8285 218 PRTTDLAVTNTCTEYIDLWHEQEERLI-------QKLR-THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY--- 284 (507)
Q Consensus 218 ~~~~~l~~~~~~dg~i~iwd~~~~~~~-------~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~--- 284 (507)
++...+++. +.+|.|+--.+...+.. ..+. .....+..+.. ....++..+..|.++-+....-...
T Consensus 6 ~~e~~~v~~-T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVML-TKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEE-ETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEE-eCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 455667777 89999988766543211 1111 11222333322 4567788888898776655321100
Q ss_pred --------ceeeecCCCceEEEEEcC---CCCEEEEEe-CCcEEEEEcCCCCCC----CCeeeecCCCCCeeEEEEccCC
Q psy8285 285 --------PTAITREGDVVCGLKWSP---NGRYLASGS-NNTVKIWDFRQLDAK----RPQVNNQCHLSAVKAIAWCPWE 348 (507)
Q Consensus 285 --------~~~~~~~~~~v~~~~~~~---~~~~l~~~~-d~~i~i~d~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~ 348 (507)
...+. ....|..+...+ +..+++..+ +|.++...+...... .....+.. .+.+..+.....+
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 11122 223444443332 345566666 599988887543110 11222332 4556565555444
Q ss_pred CcEEEEEccCCCCeEEEEeCCCC---------CeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 349 PTLLATGGGICDQTVRLWNSMNG---------KEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 349 ~~~~~~~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
..+++... +|.+..+....- .....+.....+..+..-.++..+++ .+..|..+..++.
T Consensus 163 ~~i~l~T~---~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~--vt~~G~~kr~~~~ 230 (312)
T 1suu_A 163 EKVICLSK---KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLI--VSENGYGKRLNMS 230 (312)
T ss_dssp CEEEEEET---TSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEE--EETTSEEEEEEGG
T ss_pred CEEEEEeC---CCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEE--EECCCceEEEEHH
Confidence 56666665 888888876431 12222333456677666555666666 5678888888874
No 371
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.67 E-value=39 Score=36.19 Aligned_cols=38 Identities=5% Similarity=0.084 Sum_probs=31.3
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
.+.+++..++..++++- +.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL-~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVML-SLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEE-BTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEE-eCCCEEEEEECCCCCeEEeec
Confidence 44566667788899898 999999999999999887653
No 372
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.96 E-value=7.9 Score=38.38 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=27.9
Q ss_pred cceeeeeeccCcceeeeccccccccceeeecccCCcceeeeec
Q psy8285 7 SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT 49 (507)
Q Consensus 7 ~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~ 49 (507)
..|.|+.+. ..+|++- + .|+++||||+.+++++.+...
T Consensus 222 ~~Is~~~~~--~~fLftL-~--~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVL-T--QNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEEEEE-E--TTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEEEEE-E--cCCeEEEEEcCCCceEEeecc
Confidence 356666553 4674544 4 699999999999999887654
No 373
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=53.48 E-value=1.3e+02 Score=27.27 Aligned_cols=147 Identities=7% Similarity=0.031 Sum_probs=76.6
Q ss_pred CceEEEEEc---CC----CCEEEEEe--CCcEEEEEcCCCCCCCCee-----------eecCC----CCCeeEEEEccC-
Q psy8285 293 DVVCGLKWS---PN----GRYLASGS--NNTVKIWDFRQLDAKRPQV-----------NNQCH----LSAVKAIAWCPW- 347 (507)
Q Consensus 293 ~~v~~~~~~---~~----~~~l~~~~--d~~i~i~d~~~~~~~~~~~-----------~~~~~----~~~v~~~~~~~~- 347 (507)
..+..+.+. |+ +.++..+. ...|.++|+.+++..+... ...+. ...+..|+++|+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~ 231 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD 231 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence 456777776 22 33444444 3789999998762211111 00111 246888999998
Q ss_pred ---CCcEEEEEccCCCCeEEEEe---CCCC---CeeeeeecC---CCeEEEEEC-CCCCeEEEEeccCCCeEEEEeCCC-
Q psy8285 348 ---EPTLLATGGGICDQTVRLWN---SMNG---KEKCHVKTD---SQVTSILWS-EQYRELVTSHGKQDCSLKMWEYPR- 413 (507)
Q Consensus 348 ---~~~~~~~~~~~~d~~i~i~d---~~~~---~~~~~~~~~---~~i~~~~~s-~~~~~l~~~~g~~d~~i~v~d~~~- 413 (507)
++.++...-. ...+.-.. +++. ..+..+... +.-..+++. .+|..+++ --+.+.|..|+..+
T Consensus 232 ~~~~~~LYf~pls--s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~--~~~~~aI~~w~~~~~ 307 (381)
T 3q6k_A 232 SEGNRPAYYLAGS--AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFA--EANTKQVSCWNTQKM 307 (381)
T ss_dssp TTSCCEEEEEESS--CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEE--ESSSSEEEEEETTSC
T ss_pred CCCCeEEEEEECC--CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEE--eccCCeEEEEeCCCC
Confidence 6666665542 22333332 1222 122222222 344566776 56666665 56788999999865
Q ss_pred c---cEEEEeec--cccceeEEEECCCCCEEEEEe
Q psy8285 414 L---HLIEELKI--HQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 414 ~---~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~ 443 (507)
. +....+.. .-.....+.+.++|.+.+.++
T Consensus 308 ~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 308 PLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp SBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred ccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 1 12222221 112356677766665545443
No 374
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=50.77 E-value=2e+02 Score=28.72 Aligned_cols=239 Identities=10% Similarity=0.054 Sum_probs=119.1
Q ss_pred ceeeee-eCCCC---EEEEEcCC----eEEEEECCCCceeEE-EecCCCCCC------ceEEEEEccCCCeEEEEe----
Q psy8285 167 YTSGLD-WGYHD---TLAVALDT----SVYTWNTKTNKTQLL-VEYPTYDNA------YISCVAWKPRTTDLAVTN---- 227 (507)
Q Consensus 167 ~i~~~~-~s~~~---~~~~~~~~----~i~iw~~~~~~~~~~-~~~~~~~~~------~v~~~~~~~~~~~l~~~~---- 227 (507)
....+. ++|++ +++.+.+| .++++|+.+++...- +. +. .+. ....++|..++ -++.+.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~-~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~ 206 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PI-TNSGKLLEGKFTYPTWINKD-TIIFNLVLHK 206 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CB-CTTCCBCCEETCCEEEEETT-EEEECCCCST
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cc-cccccccccccceeeEECCC-EEEEEeCCCC
Confidence 445555 78877 33334333 799999999886521 11 10 111 12345786444 444330
Q ss_pred ------CCCCcEEEEeCCCc--eeEEEEeecCccEEE-EEe--eCC-----EEEEEecC---CeEEEEECCCCCcCceee
Q psy8285 228 ------TCTEYIDLWHEQEE--RLIQKLRTHMHQVIA-MCW--NGN-----LLSCGTIG---GNILHYDVRTHSDYPTAI 288 (507)
Q Consensus 228 ------~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~-~~~--~~~-----~l~~~~~d---g~i~i~d~~~~~~~~~~~ 288 (507)
.....|+.|.+-+. +-...+.+....+.. ... +++ .+++.+.+ ..+.+.+..........+
T Consensus 207 ~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 286 (711)
T 4hvt_A 207 NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKI 286 (711)
T ss_dssp TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEEC
T ss_pred CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEe
Confidence 11246888877654 223344443333321 111 444 34443322 346666665322111222
Q ss_pred ecCCCceEEEEEcCCCCEEEEE----------e-CCcEEEEEcCCCCC----CCCeee-ec-CCCCCeeEEEEccCCCcE
Q psy8285 289 TREGDVVCGLKWSPNGRYLASG----------S-NNTVKIWDFRQLDA----KRPQVN-NQ-CHLSAVKAIAWCPWEPTL 351 (507)
Q Consensus 289 ~~~~~~v~~~~~~~~~~~l~~~----------~-d~~i~i~d~~~~~~----~~~~~~-~~-~~~~~v~~~~~~~~~~~~ 351 (507)
...... .+..+.++.+++.. . .+.|...|+..+.. ...... +. .....+..+.|..+ .+
T Consensus 287 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l 362 (711)
T 4hvt_A 287 NMPSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD--RV 362 (711)
T ss_dssp CSCTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CE
T ss_pred ecCCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC--EE
Confidence 222221 12334456555522 1 37799999876421 122222 22 23345778888865 46
Q ss_pred EEEEccCCCCeEEEEeCCCCC-eeee-ee--cCCCeEEEEECCCCCeEEEEec--cCCCeEEEEeCC
Q psy8285 352 LATGGGICDQTVRLWNSMNGK-EKCH-VK--TDSQVTSILWSEQYRELVTSHG--KQDCSLKMWEYP 412 (507)
Q Consensus 352 ~~~~~~~~d~~i~i~d~~~~~-~~~~-~~--~~~~i~~~~~s~~~~~l~~~~g--~~d~~i~v~d~~ 412 (507)
+++........+.++|+.+++ .... +. ..+.+.....++++..++.... ..-..+..+|+.
T Consensus 363 ~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 363 FLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 665543112357788876664 2233 32 2346777777788776655322 234678888876
No 375
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=47.16 E-value=1.4e+02 Score=25.64 Aligned_cols=187 Identities=10% Similarity=0.020 Sum_probs=100.1
Q ss_pred CCEEEEEecCCeEEEE---ECCCCCcCceeeecCCCceEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCC-CCC--eeee
Q psy8285 261 GNLLSCGTIGGNILHY---DVRTHSDYPTAITREGDVVCGLKWSP-NGRYLASGS-NNTVKIWDFRQLDA-KRP--QVNN 332 (507)
Q Consensus 261 ~~~l~~~~~dg~i~i~---d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~-~~~--~~~~ 332 (507)
...|+.-+..|.++-- ++....... . ......|..+.... +..+++..+ +|.++...+..... ..- ...+
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~l 112 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQGSKVS-L-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKL 112 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHTSEECC-C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCC
T ss_pred CCEEEEEcCCCeEEEEEhhhCccCcccc-c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEec
Confidence 4455556667766543 332211111 1 22345565554421 456777777 59999998765410 001 1112
Q ss_pred cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC---------CCeeeeeecCCCeEEEEECCCCCeEEEEeccCC
Q psy8285 333 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN---------GKEKCHVKTDSQVTSILWSEQYRELVTSHGKQD 403 (507)
Q Consensus 333 ~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d 403 (507)
. ....+..+........+++... .|.+..+.... |.....+.....+..+...+++.+++. .+..
T Consensus 113 k-egD~l~~~~~~~~~~~ill~T~---~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~--~T~~ 186 (276)
T 3no0_A 113 T-EGDEVVSIASSVDETHILLFTK---KGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLV--ITAK 186 (276)
T ss_dssp C-TTCCEEEEEECCSSCEEEEEET---TSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEE--EETT
T ss_pred C-CCCEEEEEEEeCCCCEEEEEEC---CCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEE--EeCC
Confidence 2 2345555555545556776665 88887776432 112222333456666665556667777 5678
Q ss_pred CeEEEEeCCC-------ccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEE--EecCCC
Q psy8285 404 CSLKMWEYPR-------LHLIEELKIHQERILSAVLSPDQTCVAAASADETISI--WNCFPR 456 (507)
Q Consensus 404 ~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~i--w~~~~~ 456 (507)
|.++...+.. ++-+..+. ..+.+..+....+...++..+.+|.+.. +++..-
T Consensus 187 G~~kr~~~~e~~~~~R~gkGv~~i~-~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 187 GRVKKISHEEIPKTNRGVKGTEVSG-TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp SCEEEEEGGGSCCCCTTCCCEECCC-SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred CcEEEeEHHHcccCCCCCcceEEEc-CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 8888887632 22233332 2344444433333446777788888887 877543
No 376
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=46.98 E-value=1.5e+02 Score=25.93 Aligned_cols=187 Identities=11% Similarity=0.028 Sum_probs=96.3
Q ss_pred CCEEEEEecCCeEEEEECCCCCcCce--------eeecCCCceEEEE-EcCCCCEEEEEeCCcEEEEEcC---CCCC---
Q psy8285 261 GNLLSCGTIGGNILHYDVRTHSDYPT--------AITREGDVVCGLK-WSPNGRYLASGSNNTVKIWDFR---QLDA--- 325 (507)
Q Consensus 261 ~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~~v~~~~-~~~~~~~l~~~~d~~i~i~d~~---~~~~--- 325 (507)
...+++.+.+|.|+--.+...+.... .+... +.+..+. -+....+++..+.|.++-+... ....
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 45678899999998777654321110 11222 3333333 3334444444445876665543 2211
Q ss_pred CCCee---eecCCCCCeeEEEEc---cCCCcEEEEEccCCCCeEEEEeCCCC-------CeeeeeecCCCeEEEEECCCC
Q psy8285 326 KRPQV---NNQCHLSAVKAIAWC---PWEPTLLATGGGICDQTVRLWNSMNG-------KEKCHVKTDSQVTSILWSEQY 392 (507)
Q Consensus 326 ~~~~~---~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~i~~~~~s~~~ 392 (507)
..++. .+. ....|..+..- +++..++.... +|.++-..+..- .....+..+..+..+......
T Consensus 82 G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~---~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~ 157 (307)
T 1zi0_A 82 GRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATA---NGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 157 (307)
T ss_dssp CEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEET---TSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT
T ss_pred CeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeC---CCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCC
Confidence 01111 122 33456555432 23445666554 899988876421 111223334556565555555
Q ss_pred CeEEEEeccCCCeEEEEeCCCc---------cEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 393 RELVTSHGKQDCSLKMWEYPRL---------HLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
..++. .+.+|.+..++...- .....+. ....|.++....++..+++.+..|.++-.++..
T Consensus 158 ~~i~l--~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 158 DEVML--FSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp CEEEE--EETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred CEEEE--ECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 55655 457888888876321 1112232 234566665555566788899999999888754
No 377
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=46.34 E-value=1.5e+02 Score=26.04 Aligned_cols=188 Identities=11% Similarity=0.052 Sum_probs=97.2
Q ss_pred CCEEEEEecCCeEEEEECCCC---CcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcC---CCCC---CCCe--
Q psy8285 261 GNLLSCGTIGGNILHYDVRTH---SDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFR---QLDA---KRPQ-- 329 (507)
Q Consensus 261 ~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~---~~~~---~~~~-- 329 (507)
...+++.+.+|.|+--.+... ......+......+..+.-+....+++..+.|.++-+... .... ..++
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~ 84 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIAN 84 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGG
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhh
Confidence 456788899999987765421 1111122333333333333444444444445876665543 2210 1111
Q ss_pred -eeecCCCCCeeEEEEccC---CCcEEEEEccCCCCeEEEEeCCC--------CCeeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 330 -VNNQCHLSAVKAIAWCPW---EPTLLATGGGICDQTVRLWNSMN--------GKEKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 330 -~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~d~~i~i~d~~~--------~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
..+. ....|..+..-++ +.+++.... +|.++-..+.. +.....+.....+..+........++.
T Consensus 85 ~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~---~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 85 IIPID-RDEEIIKAIPINDFELNGYFLFVTR---NGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp TSCCC-TTCCEEEEEEESCTTSSCEEEEEET---TSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred ccCCC-CCCEEEEEEEecccCCCceEEEEeC---CCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence 1122 2334555433332 445666554 89999887642 222222333355666555555555666
Q ss_pred EeccCCCeEEEEeCCCc---------cEEEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEEecCC
Q psy8285 398 SHGKQDCSLKMWEYPRL---------HLIEELKIHQERILSAVLSPDQT-CVAAASADETISIWNCFP 455 (507)
Q Consensus 398 ~~g~~d~~i~v~d~~~~---------~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~dg~i~iw~~~~ 455 (507)
.+.+|.+..++...- .....+. ....|.++..-+++. .|++.+..|..+.-++..
T Consensus 161 --~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 161 --VTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp --EETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred --EeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 467888888876421 1122222 233455554434444 788889999988887765
No 378
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=44.32 E-value=1.7e+02 Score=25.87 Aligned_cols=225 Identities=10% Similarity=-0.011 Sum_probs=115.1
Q ss_pred EEEEEcCCeEEEEECCCCc-------eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEe---CCCc------
Q psy8285 178 TLAVALDTSVYTWNTKTNK-------TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWH---EQEE------ 241 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd---~~~~------ 241 (507)
++..+.+|.|+--.+.+.+ -..-..+. ..+.+..+........|+.. +..|.++-.. +...
T Consensus 6 ~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k--e~D~~~~~~~~~t~d~ll~f-T~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 6 VVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK--QDDIVAHFFVCSTHDLILFF-TTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEETTSEEEEEEHHHHHHHC--------CCCC--GGGCEEEEEEEETTSEEEEE-ETTSEEEEEEGGGSCBCCSSSCC
T ss_pred EEEEeCCCEEEEeeHHHhhhcccCCCCccccccC--CCCEEEEEEEeCCCCEEEEE-eCCCeEEEEEHHHCcCCCccCCC
Confidence 5667888888866543211 11112222 34455555555555666665 5788766544 4322
Q ss_pred eeEEEE-e-ecCccEEEEEe-----eCCEEEEEecCCeEEEEECCCCCcCc------eeeecCCCceEEEEEcCCCCEEE
Q psy8285 242 RLIQKL-R-THMHQVIAMCW-----NGNLLSCGTIGGNILHYDVRTHSDYP------TAITREGDVVCGLKWSPNGRYLA 308 (507)
Q Consensus 242 ~~~~~~-~-~~~~~v~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~ 308 (507)
..+..+ . .....|..+.. +..+++..+.+|.++...+....... ..+.. .+.+..+........++
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 221111 1 12344555433 36799999999999988776432111 12222 34444444444444555
Q ss_pred EEe-CCcEEEEEcC--CCCC-CC-----CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-------C
Q psy8285 309 SGS-NNTVKIWDFR--QLDA-KR-----PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-------K 372 (507)
Q Consensus 309 ~~~-d~~i~i~d~~--~~~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-------~ 372 (507)
..+ .|.+..+... .-.. .+ ....+. ....|.++...+.+..+++... .|.++.-.+..- +
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~---~G~~Krt~l~e~~~~~R~~~ 237 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATS---GGYAKRTAIEEYPVQGRGGK 237 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEET---TSEEEEEEGGGSCBCCTTSC
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeC---CCcEEEEEHHHccccCcCCC
Confidence 555 5888888776 3200 00 111122 3445666666555556666654 888887765322 2
Q ss_pred eeeeee--c-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 373 EKCHVK--T-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 373 ~~~~~~--~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
-+..+. . ...+..+....+...++. .+.+|.+.-++..
T Consensus 238 G~~~~~l~~~~d~lv~~~~~~~~~~i~l--~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 238 GVLTVMYDRRRGRLVGALIVDDDSELYA--VTSGGGVIRTAAR 278 (327)
T ss_dssp CEESSCCCTTTCSEEEEEEECTTCEEEE--EEGGGCEEEEEGG
T ss_pred cEEEEEecCCCCeEEEEEEeCCCccEEE--EcCCCeEEEEehh
Confidence 222222 2 234555444444445555 3467777777653
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=42.08 E-value=1.7e+02 Score=29.12 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=28.8
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT 249 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~ 249 (507)
.|.++.+ +..++++- +.|.++|+|++.+++++....-
T Consensus 223 ~Is~~~~--~~~fLftL-~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVL-TQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEE-ETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEE-EcCCeEEEEEcCCCceEEeecc
Confidence 3555554 36788888 8999999999999988776543
No 380
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=41.99 E-value=2.1e+02 Score=26.23 Aligned_cols=108 Identities=8% Similarity=0.050 Sum_probs=64.6
Q ss_pred eeeeeeCCCCEEEEEcCCeEEEEECCC-Cce----------eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEE
Q psy8285 168 TSGLDWGYHDTLAVALDTSVYTWNTKT-NKT----------QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLW 236 (507)
Q Consensus 168 i~~~~~s~~~~~~~~~~~~i~iw~~~~-~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iw 236 (507)
|..++-.....++...+|.|+.|-... ++. .....+. ....|..++... ...++. ..+|.|+.|
T Consensus 77 v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~--~~~~i~~va~G~--~hs~al-~~~G~v~~w 151 (423)
T 3mvd_K 77 AVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID--LPGKALCISAGD--SHSACL-LEDGRVFAW 151 (423)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC--CSSCEEEEEECS--SEEEEE-ETTSCEEEE
T ss_pred ceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc--CCCCEEEEEcCc--CeEEEE-eCCCeEEEE
Confidence 445666666688889999999997543 110 0011111 234566666543 334444 589999999
Q ss_pred eC--CC-cee---------EEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCC
Q psy8285 237 HE--QE-ERL---------IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRT 280 (507)
Q Consensus 237 d~--~~-~~~---------~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~ 280 (507)
-. .. +++ ..........|..++......++-..+|.|+.|-...
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~ 207 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAE 207 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred eCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCc
Confidence 75 22 211 1111123446788888777777888899999997543
No 381
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=35.42 E-value=2.3e+02 Score=24.94 Aligned_cols=229 Identities=14% Similarity=0.081 Sum_probs=119.8
Q ss_pred CeEEEEeCCCCcEEEEeCCCce-------eEEEEee-cCccEEEEEe--eCCEEEEEecCCeEEEEE---CCCCCc----
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEER-------LIQKLRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYD---VRTHSD---- 283 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~-------~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d---~~~~~~---- 283 (507)
+.+++. +.+|.|+--.+.+.+ -+..+.. ....+..+.. ....|+.-+..|.++-.. +.....
T Consensus 4 ~v~v~l-s~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTI-TETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEE-ETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEE-eCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 345555 788888866543211 1111111 1222333322 456666677778766544 432210
Q ss_pred -Cc---eeeecCCCceEEEEEcC---CCCEEEEEe-CCcEEEEEcCCCCCCCC--e--eeecCCCCCeeEEEEccCCCcE
Q psy8285 284 -YP---TAITREGDVVCGLKWSP---NGRYLASGS-NNTVKIWDFRQLDAKRP--Q--VNNQCHLSAVKAIAWCPWEPTL 351 (507)
Q Consensus 284 -~~---~~~~~~~~~v~~~~~~~---~~~~l~~~~-d~~i~i~d~~~~~~~~~--~--~~~~~~~~~v~~~~~~~~~~~~ 351 (507)
+. ..+. ....|..+...+ +..+++..+ +|.++.-.+........ . ..+.. ...+..+........+
T Consensus 83 ~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~i 160 (327)
T 3uc1_A 83 QHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDL 160 (327)
T ss_dssp EEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEE
T ss_pred EEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEE
Confidence 00 0111 234455544333 467888888 59999988765321111 1 12222 3445555555455567
Q ss_pred EEEEccCCCCeEEEEeCC--CCC---------eeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc------
Q psy8285 352 LATGGGICDQTVRLWNSM--NGK---------EKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL------ 414 (507)
Q Consensus 352 ~~~~~~~~d~~i~i~d~~--~~~---------~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~------ 414 (507)
++... .|.+..+... .-. ....+.....|.++...+++.+++. .+..|.++.-.+...
T Consensus 161 ll~T~---~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~--~T~~G~~Krt~l~e~~~~~R~ 235 (327)
T 3uc1_A 161 LLVSA---NGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLV--ATSGGYAKRTAIEEYPVQGRG 235 (327)
T ss_dssp EEEET---TSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEE--EETTSEEEEEEGGGSCBCCTT
T ss_pred EEEEC---CCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEE--EeCCCcEEEEEHHHccccCcC
Confidence 77665 8888887766 211 1122333456777777666777777 568898888775322
Q ss_pred -cEEEEee--ccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 415 -HLIEELK--IHQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 415 -~~~~~~~--~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
+-+..++ .-.+.+..+....+...++..+.+|.+.-++...-.
T Consensus 236 ~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~ 281 (327)
T 3uc1_A 236 GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVR 281 (327)
T ss_dssp SCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSC
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhcc
Confidence 2222222 112334444443444567777888888888776433
No 382
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=30.83 E-value=3.1e+02 Score=24.95 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=63.9
Q ss_pred eeeeeeCCCCEEEEEcCCeEEEEECCC-Cce------------eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEE
Q psy8285 168 TSGLDWGYHDTLAVALDTSVYTWNTKT-NKT------------QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYID 234 (507)
Q Consensus 168 i~~~~~s~~~~~~~~~~~~i~iw~~~~-~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~ 234 (507)
|..++-.....++...+|.|+.|-... ++. ..... -...|..++... ...++. ..+|.|+
T Consensus 61 i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~----l~~~i~~va~G~--~hs~al-t~~G~v~ 133 (413)
T 1a12_A 61 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE----LQEKVVQVSAGD--SHTAAL-TDDGRVF 133 (413)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECC----CCSCEEEEEECS--SEEEEE-ETTSCEE
T ss_pred eEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEec----CCCcEEEEecCC--CeEEEE-cCCCcEE
Confidence 445665556688888999999997543 110 01111 123566666543 334444 5899999
Q ss_pred EEeC--CC-cee-----------EEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCC
Q psy8285 235 LWHE--QE-ERL-----------IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRT 280 (507)
Q Consensus 235 iwd~--~~-~~~-----------~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~ 280 (507)
.|-. .. +++ ...+ .....|..++......+.-..+|.|+.|-...
T Consensus 134 ~wG~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~ 192 (413)
T 1a12_A 134 LWGSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASGNDHLVMLTADGDLYTLGCGE 192 (413)
T ss_dssp EEECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred EeeCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEecCceEEEEcCCCCEEEeeCCC
Confidence 9964 21 110 1111 23456778887777777788899999998764
No 383
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=28.95 E-value=3.3e+02 Score=24.71 Aligned_cols=152 Identities=13% Similarity=0.185 Sum_probs=82.1
Q ss_pred ceeeeeeCCCCEEEEEcCCeEEEEECCC-Cc--------eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEe
Q psy8285 167 YTSGLDWGYHDTLAVALDTSVYTWNTKT-NK--------TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 167 ~i~~~~~s~~~~~~~~~~~~i~iw~~~~-~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd 237 (507)
.|..++-.....++...+|.|+.|-... ++ ......+.......|..++-.. ...++. ..+|.|+.|-
T Consensus 122 ~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~--~hs~al-t~~G~v~~wG 198 (406)
T 4d9s_A 122 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGA--EHTAAV-TEDGDLYGWG 198 (406)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEE-ETTSCEEEEE
T ss_pred CEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCC--CeEEEE-eCCCCEEEee
Confidence 3555666666688889999999997543 11 1111111110233566666543 344444 5899999996
Q ss_pred CCCc----------ee-EEEEee-cCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcC----------ceeee-cCCCc
Q psy8285 238 EQEE----------RL-IQKLRT-HMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDY----------PTAIT-REGDV 294 (507)
Q Consensus 238 ~~~~----------~~-~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~-~~~~~ 294 (507)
.... .. ...+.. ....|..++......++-..+|.|+.|-....... ...+. .....
T Consensus 199 ~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~ 278 (406)
T 4d9s_A 199 WGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSF 278 (406)
T ss_dssp CCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSC
T ss_pred CCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCC
Confidence 4321 11 111111 23467777776777777788999999986543211 01111 11223
Q ss_pred eEEEEEcCCCCEEEEEeCCcEEEEEcCC
Q psy8285 295 VCGLKWSPNGRYLASGSNNTVKIWDFRQ 322 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~d~~i~i~d~~~ 322 (507)
|..++--.. ..++...++.|+.|=...
T Consensus 279 v~~i~~G~~-hs~alt~~G~v~~wG~n~ 305 (406)
T 4d9s_A 279 ISQISGGWR-HTMALTSDGKLYGWGWNK 305 (406)
T ss_dssp EEEEEECSS-EEEEEETTSCEEEEECCT
T ss_pred EEEEEecCC-EEEEEcCCCeEEEeeCCC
Confidence 555544322 223333468888886543
No 384
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=28.31 E-value=1.6e+02 Score=20.90 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=16.5
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEEcCC
Q psy8285 296 CGLKWSPNGRYLASGSNNTVKIWDFRQ 322 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~d~~i~i~d~~~ 322 (507)
..+.+..+|++++...++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 34677788887776554544 676543
No 385
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=24.98 E-value=3.5e+02 Score=23.71 Aligned_cols=230 Identities=14% Similarity=0.069 Sum_probs=115.4
Q ss_pred cCCCeEEEEeCCCCcEEEEeCCCcee----EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEEC---CCCCc-----
Q psy8285 218 PRTTDLAVTNTCTEYIDLWHEQEERL----IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDV---RTHSD----- 283 (507)
Q Consensus 218 ~~~~~l~~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~---~~~~~----- 283 (507)
|+...+++. +.+|.|+--.+.+.+. ...+... ..+..+.. ..+.|+..+..|.++-+.. .....
T Consensus 3 ~~e~~~v~l-T~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTV-TKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEE-ETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEE-eCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 455667777 8899888765432110 0011212 22322222 4667777788888665544 22210
Q ss_pred Cc-eee-ecCCCceEEE-EEcC--CCCEEEEEe-CCcEEEEEcCCCCCCC---Cee--eecCCCCCeeEEEEccCCCcEE
Q psy8285 284 YP-TAI-TREGDVVCGL-KWSP--NGRYLASGS-NNTVKIWDFRQLDAKR---PQV--NNQCHLSAVKAIAWCPWEPTLL 352 (507)
Q Consensus 284 ~~-~~~-~~~~~~v~~~-~~~~--~~~~l~~~~-d~~i~i~d~~~~~~~~---~~~--~~~~~~~~v~~~~~~~~~~~~~ 352 (507)
+. ..+ ......|..+ ...+ ++.+++..+ +|.++.-.+....... -+. .+. ..+.+..+........++
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~-e~d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-NDDQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-TTCCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeC-CCCEEEEEEEeCCCCEEE
Confidence 00 011 1123345544 3332 256677777 5999998875431111 111 222 224555555544444676
Q ss_pred EEEccCCCCeEEEEeCCCC-------Ceee--eeecCCCeEEEEECCCCC-eEEEEeccCCCeEEEEeCCC-------cc
Q psy8285 353 ATGGGICDQTVRLWNSMNG-------KEKC--HVKTDSQVTSILWSEQYR-ELVTSHGKQDCSLKMWEYPR-------LH 415 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~~~-------~~~~--~~~~~~~i~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~-------~~ 415 (507)
+... +|.+..+....- +-+. .+.....+.++...+++. .+++ .+..|..+..++.. ++
T Consensus 160 l~T~---~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~--vt~~G~gKr~~~~e~~~~~Rg~k 234 (323)
T 1wp5_A 160 LVTH---NGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVV--ATQRGAVKKMKLTEFEKATRAKR 234 (323)
T ss_dssp EEET---TSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEE--EETTSEEEEEEGGGSCCCCTTSC
T ss_pred EEeC---CCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEE--EECCCceEEEEHHHccccCCCCC
Confidence 6665 888887775421 1122 223334566665444444 5666 45688877776643 12
Q ss_pred EEEEee---ccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 416 LIEELK---IHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 416 ~~~~~~---~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
-+..++ .....+..+....++..++..+..|.+....+..
T Consensus 235 Gv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 235 GVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred CEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 222222 2222344332223344566777788877777654
No 386
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=24.62 E-value=5.6e+02 Score=25.92 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=34.4
Q ss_pred CCceEEEEEccCC-CeEEEEeCCCCcEEEEeCCCceeEEEEeec-------CccEEEEEee---CCEEEEEe
Q psy8285 208 NAYISCVAWKPRT-TDLAVTNTCTEYIDLWHEQEERLIQKLRTH-------MHQVIAMCWN---GNLLSCGT 268 (507)
Q Consensus 208 ~~~v~~~~~~~~~-~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~---~~~l~~~~ 268 (507)
...|.+|+++|.. ..++++ ...+.|...+ ..++.-..+..+ ...+.+++++ .+.++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~-~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYAR-TDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEE-ESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEE-ecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 4689999999975 344555 5666666554 334433333321 2468888884 34454444
No 387
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=22.45 E-value=4.2e+02 Score=23.69 Aligned_cols=255 Identities=8% Similarity=-0.065 Sum_probs=116.2
Q ss_pred ceeeeeeCC--CC-EEEEEcCC----eEEEEECCCCceeEEEe---cCCCC-------CCceEEEEEccC--CCeEEEEe
Q psy8285 167 YTSGLDWGY--HD-TLAVALDT----SVYTWNTKTNKTQLLVE---YPTYD-------NAYISCVAWKPR--TTDLAVTN 227 (507)
Q Consensus 167 ~i~~~~~s~--~~-~~~~~~~~----~i~iw~~~~~~~~~~~~---~~~~~-------~~~v~~~~~~~~--~~~l~~~~ 227 (507)
.|.+|...| ++ +++++..+ .|...+-.......... +.... ...|.++++.|. ...+.++
T Consensus 56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g- 134 (394)
T 3b7f_A 56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAG- 134 (394)
T ss_dssp EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEE-
T ss_pred ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEE-
Confidence 467788876 44 77776655 45544322222222211 11100 125788999873 4556665
Q ss_pred CCCCcEEEEeCCCceeEEEEee-------------------cCccEEEEEee---CCEEEEEecCCeEEEEECCCCCcCc
Q psy8285 228 TCTEYIDLWHEQEERLIQKLRT-------------------HMHQVIAMCWN---GNLLSCGTIGGNILHYDVRTHSDYP 285 (507)
Q Consensus 228 ~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~ 285 (507)
...+.|...+ ..++....+.. ....+.+|.++ ...|..+..++.|...+-.. + .-
T Consensus 135 ~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG-~-tW 211 (394)
T 3b7f_A 135 TSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAG-T-DW 211 (394)
T ss_dssp EETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTT-S-SC
T ss_pred ecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCC-C-Cc
Confidence 4556555543 22222222211 12356788874 34555565555454432221 1 11
Q ss_pred eeeec-------------CCCceEEEEEcCC-CCEEEEEeCCcEEEEEcCCCCCCCCeeeecC--CC---CCeeEEEEcc
Q psy8285 286 TAITR-------------EGDVVCGLKWSPN-GRYLASGSNNTVKIWDFRQLDAKRPQVNNQC--HL---SAVKAIAWCP 346 (507)
Q Consensus 286 ~~~~~-------------~~~~v~~~~~~~~-~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~---~~v~~~~~~~ 346 (507)
..... ....+.++.+.|+ ...+..+..+.|...+-. + +....+.. .. ..+..+.++|
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G---~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-E---GVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-T---TEEECGGGGSCTTTCSCEEEEEECS
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-C---CcceECCCCCCCCCccceEEEEECC
Confidence 11110 0134889999986 356666666555544422 2 11111111 11 2356788877
Q ss_pred CC-CcEEEEEc-cC-------CCCeEEEEeCCC-CCeeeeeec--CC-------CeEEEEECCCC-CeEEEEeccCCCeE
Q psy8285 347 WE-PTLLATGG-GI-------CDQTVRLWNSMN-GKEKCHVKT--DS-------QVTSILWSEQY-RELVTSHGKQDCSL 406 (507)
Q Consensus 347 ~~-~~~~~~~~-~~-------~d~~i~i~d~~~-~~~~~~~~~--~~-------~i~~~~~s~~~-~~l~~~~g~~d~~i 406 (507)
.. ..+++... +. .++...+|...+ ++.-..+.. .. ....++++|.. ..|++ +..++.|
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~--g~~~g~l 365 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYF--GTTGGEI 365 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEE--ECTTSCE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEE--EeCCCeE
Confidence 43 34554431 00 022334554433 333222221 11 01357787753 44666 4445555
Q ss_pred EEEeCCCccEEEEeeccccceeEEEE
Q psy8285 407 KMWEYPRLHLIEELKIHQERILSAVL 432 (507)
Q Consensus 407 ~v~d~~~~~~~~~~~~~~~~i~~~~~ 432 (507)
..-+ ..++.-..+..+-..+.+++|
T Consensus 366 ~~S~-D~G~tW~~~~~~lp~~~~v~~ 390 (394)
T 3b7f_A 366 WASA-DEGEHWQCIASHLPHIYAVQS 390 (394)
T ss_dssp EEES-STTSBCEEEECSCSCEEEEEE
T ss_pred EEEC-CCCCCceEcccCCCCeeEEEE
Confidence 4332 233333333333445666665
No 388
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=21.56 E-value=5.5e+02 Score=24.75 Aligned_cols=246 Identities=13% Similarity=0.134 Sum_probs=125.3
Q ss_pred EEEEECCCCceeEEEecCCCCCCc---------------eEEEEE-ccCCCeEEEEeC--CCCcEEEEeCCCceeEEEEe
Q psy8285 187 VYTWNTKTNKTQLLVEYPTYDNAY---------------ISCVAW-KPRTTDLAVTNT--CTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 187 i~iw~~~~~~~~~~~~~~~~~~~~---------------v~~~~~-~~~~~~l~~~~~--~dg~i~iwd~~~~~~~~~~~ 248 (507)
|.+++-.+|+......... .... ..++++ .-+...++++-+ ....+..||...+++.....
T Consensus 231 L~vfdG~TG~~l~~~~~~p-~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~ 309 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEP-ARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWT 309 (591)
T ss_dssp EEEEETTTCCEEEEEECSS-CCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCC-CCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEE
Confidence 7888888888776666532 1111 223333 222234444411 22358889988776644332
Q ss_pred --e-------------cCccEEEEEeeCC-EEEEEe----cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC--CE
Q psy8285 249 --T-------------HMHQVIAMCWNGN-LLSCGT----IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG--RY 306 (507)
Q Consensus 249 --~-------------~~~~v~~~~~~~~-~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~ 306 (507)
. |.-.|-.+.-||+ .|+.|+ .||++ +|.. -.+|...+....|.|+. ..
T Consensus 310 ~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~dG~~-L~st---------~~gHGDa~hv~dldP~r~GlE 379 (591)
T 2zux_A 310 LDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKG-MYST---------GLGHGDALHTGDLDPGRPGLE 379 (591)
T ss_dssp EETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTTSCE-EEEC---------SCCCCSCEEEECCCTTSSSCE
T ss_pred ecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCCCCE-eeeC---------CCCCCCeeEEeecCCCCCCcE
Confidence 1 3333333333433 344333 33433 3433 23788888888888874 34
Q ss_pred EEEEeC-----CcEEEEEcCCCCCCCCeeeecC--CCCCeeEEEEccCCC--cEEEEEccCCCCeEEEEeCCCCCeeeee
Q psy8285 307 LASGSN-----NTVKIWDFRQLDAKRPQVNNQC--HLSAVKAIAWCPWEP--TLLATGGGICDQTVRLWNSMNGKEKCHV 377 (507)
Q Consensus 307 l~~~~d-----~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 377 (507)
++.+.+ .-..+.|.+++ +.+..... +.+......|.|+.+ .+.+ . . .+|+. +++.+...
T Consensus 380 v~~~~E~~~~~~G~~~~dA~tG---~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~--~----~--~l~~~-~G~~i~~~ 447 (591)
T 2zux_A 380 VFQVHEDKNAKYGLSFRDAATG---KILWGVYAGKDVGRGMAADIDPRYPGQEVWA--N----G--SLYSA-KGVKIGSG 447 (591)
T ss_dssp EEEECCCTTSSCSEEEEETTTC---CEEEEECCSSCCCCEEEECCCTTSSSCEEEE--T----T--EEECT-TSCBCSSC
T ss_pred EEEEecCCCCCCccEEEECCCC---cEEEEcCCCCCCCceeEEecCCCCCceEEEe--c----C--ceECC-CCCEecCC
Confidence 555442 14556788887 66655443 244555555666532 2332 1 1 36664 34444332
Q ss_pred ecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc--EEEEeec-------cccceeEEEECCCC--CEEEEEeCCC
Q psy8285 378 KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH--LIEELKI-------HQERILSAVLSPDQ--TCVAAASADE 446 (507)
Q Consensus 378 ~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~--~~~~~~~-------~~~~i~~~~~s~~~--~~l~s~~~dg 446 (507)
.....-..+-|.-|...-+.. .+.|.-|+...++ .+.++.+ ...+.....+--|. ..|+-...+.
T Consensus 448 ~p~~~N~~i~WdGDl~relld----~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~ 523 (591)
T 2zux_A 448 VPSSTNFGIWWDGDLLREQLD----SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSS 523 (591)
T ss_dssp CCSCCSEEECCSSSSSCEEEE----TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSS
T ss_pred CCCCcceeEEECCCCcHhhhC----CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCC
Confidence 111223467788776444431 3478889877665 3444432 11122222232332 2344344556
Q ss_pred cEEEEecCCCCcc
Q psy8285 447 TISIWNCFPRDKK 459 (507)
Q Consensus 447 ~i~iw~~~~~~~~ 459 (507)
.++||........
T Consensus 524 ~LrIYtt~~pt~~ 536 (591)
T 2zux_A 524 ALRIYTTTIPTEH 536 (591)
T ss_dssp EEEEECCCCCCSC
T ss_pred eEEEEeCCCCCcc
Confidence 7999988655544
No 389
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=21.13 E-value=3.7e+02 Score=22.56 Aligned_cols=146 Identities=11% Similarity=-0.007 Sum_probs=76.4
Q ss_pred CEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCC---CC-CCC---eeeecC
Q psy8285 262 NLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQL---DA-KRP---QVNNQC 334 (507)
Q Consensus 262 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~---~~-~~~---~~~~~~ 334 (507)
...++.+.+|.|+--...........+......+..+..+....+++..+.|.++-+....- .. ..+ ...+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 45667788888877665542211222333333344344444455555555687766654321 00 011 11122
Q ss_pred CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-------CCeeeeeecCCCeEEEEEC-CCCCeEEEEeccCCCeE
Q psy8285 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-------GKEKCHVKTDSQVTSILWS-EQYRELVTSHGKQDCSL 406 (507)
Q Consensus 335 ~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~g~~d~~i 406 (507)
....|.++....++.+++.... .|.++...+.. +.....+.....+..+... .++..++. .+.+|.+
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~---~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l--~T~~G~~ 156 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASD---AGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLA--ITQAGRM 156 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBT---TSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEE--EETTSEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeC---CCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEE--EcCCCeE
Confidence 2345666644334445665554 89998887632 2233334334455555555 34456666 4678888
Q ss_pred EEEeCCC
Q psy8285 407 KMWEYPR 413 (507)
Q Consensus 407 ~v~d~~~ 413 (507)
..++...
T Consensus 157 lrf~~~e 163 (256)
T 1zvt_A 157 LMFPVSD 163 (256)
T ss_dssp EEEEGGG
T ss_pred EEEEHHH
Confidence 8888643
Done!