BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8286
(858 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 699 LKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQ 758
L H R H KP+ C C KSF K +L HQ TH P+KC C + F + +
Sbjct: 37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK--PYKCPECGKSFSQRANLR 94
Query: 759 AHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVR 818
AH R+H +P+ C CG+ F + + H R H +K Y C CGK+F R L H R
Sbjct: 95 AHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR 154
Query: 819 VHNGERPFSCHICGKTSTTKSNHNKHVKTHHARET 853
H GE+P+ C CGK+ + + N H +TH ++T
Sbjct: 155 THTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNIRP 769
KP++C C KSF +L HQ TH P+KC C + F + H R+H +P
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEK--PYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 770 FTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERPFSCH 829
+ C CG+ F ++ N H R H +K Y+C CGK+F + +L AH R H GE+P+ C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 830 ICGKTSTTKSNHNKHVKTH 848
CGK+ + + N + H +TH
Sbjct: 138 ECGKSFSREDNLHTHQRTH 156
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 80/181 (44%), Gaps = 14/181 (7%)
Query: 645 PKQCTYCTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTDENVNCDIC-KIVVLKSTLKSHM 703
P C C + F+ + L H R + ++ C C K K L H
Sbjct: 21 PYACPECGKSFSRSDHLAEHQRTH-----------TGEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 704 RIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRS 763
R H KP+ C C KSF + NL HQ TH P+ C C + F + +AH R+
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE--KPYACPECGKSFSQLAHLRAHQRT 127
Query: 764 HRNIRPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGE 823
H +P+ C CG+ F R+ N H R H +K Y C CGK+F R L H R H G+
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Query: 824 R 824
+
Sbjct: 188 K 188
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 509 CDTCSEVF---DKLKDYQEHIKNVHPLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVC 565
C C + F D L ++Q P CP C K+F K LT H RTH KPYKC C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 566 DKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNLAQXXXXXXXXXXXXXDFYC-HC 624
KSF L H+ THTG P+ C C + F + ++L + C C
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL----RAHQRTHTGEKPYKCPEC 139
Query: 625 GEIFQSRGKLLWHQETH-ATVPKQCTYCTEKFTHTSSLTRHIR 666
G+ F L HQ TH P +C C + F+ +L H R
Sbjct: 140 GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 83/215 (38%), Gaps = 46/215 (21%)
Query: 584 GNAPFPCNMCDRHFKRYSNLAQXXXXXXXXXXXXXDFYCHCGEIFQSRGKLLWHQETH-A 642
G P+ C C + F R +LA+ HQ TH
Sbjct: 18 GEKPYACPECGKSFSRSDHLAE-------------------------------HQRTHTG 46
Query: 643 TVPKQCTYCTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTDENVNCDIC-KIVVLKSTLKS 701
P +C C + F+ LTRH R + ++ C C K ++ L++
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQRTH-----------TGEKPYKCPECGKSFSQRANLRA 95
Query: 702 HMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHL 761
H R H KP++C C KSF +L HQ TH P+KC C + F H
Sbjct: 96 HQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE--KPYKCPECGKSFSREDNLHTHQ 153
Query: 762 RSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELKK 796
R+H +P+ C CG+ F R+ H R H KK
Sbjct: 154 RTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 753 SSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYY 812
SSS QA L +P+ C CG+ F R + H R H +K Y C CGK+F
Sbjct: 7 SSSVAQAALEP--GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKD 64
Query: 813 LTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTH 848
LT H R H GE+P+ C CGK+ + ++N H +TH
Sbjct: 65 LTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 509 CDTCSEVFDKLKDYQEHIK---NVHPLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVC 565
C C + F +L + H + P CP C K+F + +L H RTH KPYKC C
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Query: 566 DKSFVTAQKLSDHKNTHTG 584
KSF L+ H+ THTG
Sbjct: 168 GKSFSRRDALNVHQRTHTG 186
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 768 RPFTC--NYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
RP+ C C R+F R + RH+R H +K + C IC + F RS +LT H+R H GE+P
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 826 FSCHICGKTSTTKSNHNKHVKTH 848
F+C ICG+ +H K H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 531 PLPCPV--CSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPF 588
P CPV C + F LT H+R H KP++C +C ++F + L+ H THTG PF
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 589 PCNMCDRHFKR 599
C++C R F R
Sbjct: 64 ACDICGRKFAR 74
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 738 MHMPFKC--KSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELK 795
M P+ C +SC+R F S++ H+R H +PF C C R F R + H+R H +
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVH 820
K ++C ICG+ F RS H ++H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 710 KPFSCTV--CKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNI 767
+P++C V C + F +L H H + PF+C+ C R F S H+R+H
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQK--PFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKK 796
+PF C+ CGRKF R RH + H +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 510 DTCSEVFDKLKDYQEHIKNVH----PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVC 565
++C F + D HI+ +H P C +C + F LT H+RTH KP+ CD+C
Sbjct: 10 ESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 566 DKSFVTAQKLSDHKNTH 582
+ F + + H H
Sbjct: 69 GRKFARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 697 STLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSE 756
+ L H+RIH KPF C +C ++F +L H TH PF C C R F S E
Sbjct: 20 ADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--EKPFACDICGRKFARSDE 77
Query: 757 YQAHLRSH 764
+ H + H
Sbjct: 78 RKRHTKIH 85
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 558 KPYKCDV--CDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNL 603
+PY C V CD+ F + L+ H HTG PF C +C R+F R +L
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHL 50
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 768 RPFTC--NYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
RP+ C C R+F R RH+R H +K + C IC + F RS +LT H+R H GE+P
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 826 FSCHICGKTSTTKSNHNKHVKTH 848
F+C ICG+ +H K H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 531 PLPCPV--CSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPF 588
P CPV C + F LT H+R H KP++C +C ++F + L+ H THTG PF
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 589 PCNMCDRHFKR 599
C++C R F R
Sbjct: 64 ACDICGRKFAR 74
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 738 MHMPFKC--KSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELK 795
M P+ C +SC+R F S+E H+R H +PF C C R F R + H+R H +
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVH 820
K ++C ICG+ F RS H ++H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 710 KPFSCTV--CKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNI 767
+P++C V C + F L H H + PF+C+ C R F S H+R+H
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQK--PFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKK 796
+PF C+ CGRKF R RH + H +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 510 DTCSEVFDKLKDYQEHIKNVH----PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVC 565
++C F + + HI+ +H P C +C + F LT H+RTH KP+ CD+C
Sbjct: 10 ESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 566 DKSFVTAQKLSDHKNTH 582
+ F + + H H
Sbjct: 69 GRKFARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 697 STLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSE 756
+ L H+RIH KPF C +C ++F +L H TH PF C C R F S E
Sbjct: 20 AELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--EKPFACDICGRKFARSDE 77
Query: 757 YQAHLRSH 764
+ H + H
Sbjct: 78 RKRHTKIH 85
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 558 KPYKCDV--CDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNL 603
+PY C V CD+ F + +L+ H HTG PF C +C R+F R +L
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHL 50
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 768 RPFTC--NYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
RP+ C C R+F R RH+R H +K + C IC + F RS +LT H+R H GE+P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 826 FSCHICGKTSTTKSNHNKHVKTH 848
F+C ICG+ +H K H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 531 PLPCPV--CSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPF 588
P CPV C + F LT H+R H KP++C +C ++F + L+ H THTG PF
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 589 PCNMCDRHFKR 599
C++C R F R
Sbjct: 64 ACDICGRKFAR 74
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 738 MHMPFKC--KSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELK 795
M P+ C +SC+R F S E H+R H +PF C C R F R + H+R H +
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVH 820
K ++C ICG+ F RS H ++H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 710 KPFSCTV--CKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNI 767
+P++C V C + F L H H + PF+C+ C R F S H+R+H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQK--PFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKK 796
+PF C+ CGRKF R RH + H +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 510 DTCSEVFDKLKDYQEHIKNVH----PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVC 565
++C F + + HI+ +H P C +C + F LT H+RTH KP+ CD+C
Sbjct: 10 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 566 DKSFVTAQKLSDHKNTH 582
+ F + + H H
Sbjct: 69 GRKFARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 699 LKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQ 758
L H+RIH KPF C +C ++F +L H TH PF C C R F S E +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--EKPFACDICGRKFARSDERK 79
Query: 759 AHLRSH 764
H + H
Sbjct: 80 RHTKIH 85
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 558 KPYKCDV--CDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNL 603
+PY C V CD+ F + +L+ H HTG PF C +C R+F R +L
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 50
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 768 RPFTC--NYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
RP+ C C R+F N RH+R H +K + C IC + F RS +LT H+R H GE+P
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 826 FSCHICGKTSTTKSNHNKHVKTH 848
F+C ICG+ +H K H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 531 PLPCPV--CSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPF 588
P CPV C + F +LT H+R H KP++C +C ++F + L+ H THTG PF
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 589 PCNMCDRHFKR 599
C++C R F R
Sbjct: 64 ACDICGRKFAR 74
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 738 MHMPFKC--KSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELK 795
M P+ C +SC+R F SS H+R H +PF C C R F R + H+R H +
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVH 820
K ++C ICG+ F RS H ++H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 710 KPFSCTV--CKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNI 767
+P++C V C + F NL H H + PF+C+ C R F S H+R+H
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQK--PFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKK 796
+PF C+ CGRKF R RH + H +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 697 STLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSE 756
S L H+RIH KPF C +C ++F +L H TH PF C C R F S E
Sbjct: 20 SNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--EKPFACDICGRKFARSDE 77
Query: 757 YQAHLRSH 764
+ H + H
Sbjct: 78 RKRHTKIH 85
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 510 DTCSEVFDKLKDYQEHIKNVH----PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVC 565
++C F + HI+ +H P C +C + F LT H+RTH KP+ CD+C
Sbjct: 10 ESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 566 DKSFVTAQKLSDHKNTH 582
+ F + + H H
Sbjct: 69 GRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 558 KPYKCDV--CDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNL 603
+PY C V CD+ F + L+ H HTG PF C +C R+F R +L
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHL 50
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 768 RPFTC--NYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
RP+ C C R+F R RH+R H +K + C IC + F RS +LT H+R H GE+P
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 826 FSCHICGKTSTTKSNHNKHVKTH 848
F+C ICG+ +H K H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 531 PLPCPV--CSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPF 588
P CPV C + F LT H+R H KP++C +C ++F + L+ H THTG PF
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 589 PCNMCDRHFKR 599
C++C R F R
Sbjct: 63 ACDICGRKFAR 73
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 741 PFKC--KSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELKKKY 798
P+ C +SC+R F S E H+R H +PF C C R F R + H+R H +K +
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 799 SCTICGKTFHRSYYLTAHVRVH 820
+C ICG+ F RS H ++H
Sbjct: 63 ACDICGRKFARSDERKRHTKIH 84
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 510 DTCSEVFDKLKDYQEHIKNVH----PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVC 565
++C F + + HI+ +H P C +C + F LT H+RTH KP+ CD+C
Sbjct: 9 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 67
Query: 566 DKSFVTAQKLSDHKNTH 582
+ F + + H H
Sbjct: 68 GRKFARSDERKRHTKIH 84
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 699 LKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQ 758
L H+RIH KPF C +C ++F +L H TH PF C C R F S E +
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--EKPFACDICGRKFARSDERK 78
Query: 759 AHLRSH 764
H + H
Sbjct: 79 RHTKIH 84
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 558 KPYKCDV--CDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNL 603
+PY C V CD+ F + +L+ H HTG PF C +C R+F R +L
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 49
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 768 RPFTC--NYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
RP+ C C R+F R RH+R H +K + C IC + F RS +LT H+R H GE+P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 826 FSCHICGKTSTTKSNHNKHVKTH 848
F+C ICG+ +H K H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 531 PLPCPV--CSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPF 588
P CPV C + F LT H+R H KP++C +C ++F + L+ H THTG PF
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 589 PCNMCDRHFKR 599
C++C R F R
Sbjct: 64 ACDICGRKFAR 74
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 741 PFKC--KSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELKKKY 798
P+ C +SC+R F S E H+R H +PF C C R F R + H+R H +K +
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 799 SCTICGKTFHRSYYLTAHVRVH 820
+C ICG+ F RS H ++H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 510 DTCSEVFDKLKDYQEHIKNVH----PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVC 565
++C F + + HI+ +H P C +C + F LT H+RTH KP+ CD+C
Sbjct: 10 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 566 DKSFVTAQKLSDHKNTH 582
+ F + + H H
Sbjct: 69 GRKFARSDERKRHTKIH 85
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 699 LKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQ 758
L H+RIH KPF C +C ++F +L H TH PF C C R F S E +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--EKPFACDICGRKFARSDERK 79
Query: 759 AHLRSH 764
H + H
Sbjct: 80 RHTKIH 85
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 558 KPYKCDV--CDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNL 603
+PY C V CD+ F + +L+ H HTG PF C +C R+F R +L
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 50
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 768 RPFTC--NYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
RP+ C C R+F + + RH+R H +K + C IC + F RS +LT H+R H GE+P
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 826 FSCHICGKTSTTKSNHNKHVKTH 848
F+C ICG+ +H K H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 531 PLPCPV--CSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPF 588
P CPV C + F SLT H+R H KP++C +C ++F + L+ H THTG PF
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 589 PCNMCDRHFKR 599
C++C R F R
Sbjct: 64 ACDICGRKFAR 74
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 738 MHMPFKC--KSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELK 795
M P+ C +SC+R F S H+R H +PF C C R F R + H+R H +
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVH 820
K ++C ICG+ F RS H ++H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 710 KPFSCTV--CKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNI 767
+P++C V C + F +L H H + PF+C+ C R F S H+R+H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQK--PFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKK 796
+PF C+ CGRKF R RH + H +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 697 STLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSE 756
+L H+RIH KPF C +C ++F +L H TH PF C C R F S E
Sbjct: 20 GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--EKPFACDICGRKFARSDE 77
Query: 757 YQAHLRSH 764
+ H + H
Sbjct: 78 RKRHTKIH 85
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 510 DTCSEVFDKLKDYQEHIKNVH----PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVC 565
++C F + HI+ +H P C +C + F LT H+RTH KP+ CD+C
Sbjct: 10 ESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 566 DKSFVTAQKLSDHKNTH 582
+ F + + H H
Sbjct: 69 GRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 558 KPYKCDV--CDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNL 603
+PY C V CD+ F + L+ H HTG PF C +C R+F R +L
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHL 50
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 624 CGEIFQSRGKLLWHQETH-ATVPKQCTYCTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTD 682
C F G L H H P QC C F+ + LT HIR + +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-----------TGE 60
Query: 683 ENVNCDICKIVVLKS-TLKSHMRIHDNAK 710
+ CDIC +S K H +IH K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%)
Query: 738 MHMPFKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELKKK 797
M P+KC C + F SS Q H R+H +P+ C CG+ F + + +H R H +K
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 798 YSCTICGKTFHRSYYLTAHVRVHNGER 824
Y C CGK+F RS +L+ H R H ++
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 41/75 (54%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFPC 590
P CP C K+F +L H RTH KPYKC C KSF + L H+ THTG P+ C
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 591 NMCDRHFKRYSNLAQ 605
C + F R +L++
Sbjct: 64 PECGKSFSRSDHLSR 78
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNIRP 769
KP+ C C KSF NL HQ TH P+KC C + F SS+ Q H R+H +P
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGE--KPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 770 FTCNYCGRKFIRKFNCIRHVREHELKK 796
+ C CG+ F R + RH R H+ KK
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERPFS 827
+P+ C CG+ F + N +H R H +K Y C CGK+F +S L H R H GE+P+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 828 CHICGKTSTTKSNHNKHVKTH 848
C CGK+ + + ++H +TH
Sbjct: 63 CPECGKSFSRSDHLSRHQRTH 83
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 508 RCDTCSEVFDKLKDYQEHIK---NVHPLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDV 564
+C C + F + + Q+H + P CP C K+F L H RTH KPYKC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 565 CDKSFVTAQKLSDHKNTH 582
C KSF + LS H+ TH
Sbjct: 66 CGKSFSRSDHLSRHQRTH 83
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 794 LKKKYSCTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTH 848
++K Y C CGK+F +S L H R H GE+P+ C CGK+ + S+ KH +TH
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 32/110 (29%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNLAQXXXXXXXXXXXX 617
KPYKC C KSF + L H+ THTG P+ C C + F + S+L +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQK------------ 50
Query: 618 XDFYCHCGEIFQSRGKLLWHQETH-ATVPKQCTYCTEKFTHTSSLTRHIR 666
HQ TH P +C C + F+ + L+RH R
Sbjct: 51 -------------------HQRTHTGEKPYKCPECGKSFSRSDHLSRHQR 81
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 645 PKQCTYCTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTDENVNCDIC-KIVVLKSTLKSHM 703
P +C C + F+ +S+L +H R + ++ C C K S L+ H
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTH-----------TGEKPYKCPECGKSFSQSSDLQKHQ 52
Query: 704 RIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSR 737
R H KP+ C C KSF +L HQ TH ++
Sbjct: 53 RTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNK 86
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 768 RPFTC--NYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
RP+ C C R+F +K N H+R H +K + C IC + F + L AH+R H GE+P
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 826 FSCHICGKTSTTKSNHNKHVKTH 848
F+C ICG+ T +H K H
Sbjct: 63 FACDICGRKFATLHTRTRHTKIH 85
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 531 PLPCPV--CSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPF 588
P CPV C + F K +L H+R H KP++C +C ++F L+ H THTG PF
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 589 PCNMCDRHF 597
C++C R F
Sbjct: 64 ACDICGRKF 72
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 710 KPFSCTV--CKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNI 767
+P++C V C + F K NL H H + PF+C+ C R F + AH+R+H
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQK--PFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKK 796
+PF C+ CGRKF RH + H +K
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 738 MHMPFKC--KSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELK 795
M P+ C +SC+R F + H+R H +PF C C R F ++ + H+R H +
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVH 820
K ++C ICG+ F + T H ++H
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIH 85
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 510 DTCSEVFDKLKDYQEHIKNVH----PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVC 565
++C F + + HI+ +H P C +C + F + SL H+RTH KP+ CD+C
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDIC 68
Query: 566 DKSFVTAQKLSDHKNTH 582
+ F T + H H
Sbjct: 69 GRKFATLHTRTRHTKIH 85
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 696 KSTLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSS 755
K+ L +H+RIH KPF C +C ++F + +L H TH PF C C R F +
Sbjct: 19 KTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG--EKPFACDICGRKFATLH 76
Query: 756 EYQAHLRSH 764
H + H
Sbjct: 77 TRTRHTKIH 85
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 558 KPYKCDV--CDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNL 603
+PY C V CD+ F L H HTG PF C +C R+F + ++L
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASL 50
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 651 CTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTDENVNCDIC-KIVVLKSTLKSHMRIHDNA 709
C +F+ ++L HIR + + C IC + +++L +H+R H
Sbjct: 12 CDRRFSQKTNLDTHIRIH-----------TGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSRMHM 740
KPF+C +C + F T LH T +++H+
Sbjct: 61 KPFACDICGRKFAT-----LHTRTRHTKIHL 86
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 741 PFKCK--SCNRGFYSSSEYQAHLRSHRNIRPFTCNY--CGRKFIRKFNCIRHVREHELKK 796
PF C CN+ ++ S Q H R H +P+ C++ C R+F R RH R H K
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 797 KYSCTICGKTFHRSYYLTAHVRVHNGERPFSC 828
+ C C + F RS +L H R H GE+PFSC
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 710 KPFSCTV--CKKSFYTKWNLGLHQWTHVSRMHMPFKC--KSCNRGFYSSSEYQAHLRSHR 765
+PF C C K ++ +L +H H P++C K C R F S + + H R H
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEK--PYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 766 NIRPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCTI--CGKTFHRSYYLTAHVRVH 820
++PF C C RKF R + H R H +K +SC C K F RS L H +H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 531 PLPC--PVCSKTFPSKPSLTLHMRTHLKIKPYKCDV--CDKSFVTAQKLSDHKNTHTGNA 586
P C P C+K + L +H R H KPY+CD C++ F + +L H+ HTG
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 587 PFPCNMCDRHFKRYSNL 603
PF C C R F R +L
Sbjct: 66 PFQCKTCQRKFSRSDHL 82
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 512 CSEVFDKLKDYQEHIK---NVHPLPCPV--CSKTFPSKPSLTLHMRTHLKIKPYKCDVCD 566
C++ + KL Q H + P C C + F L H R H +KP++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 567 KSFVTAQKLSDHKNTHTGNAPFPCNM--CDRHFKRYSNLAQ 605
+ F + L H THTG PF C C + F R L +
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVR 114
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 517 DKLKDYQEHIKNVHPLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCD--VCDKSFVTAQK 574
D+LK +Q V P C C + F L H RTH KP+ C C K F + +
Sbjct: 52 DQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDE 111
Query: 575 LSDHKNTH 582
L H N H
Sbjct: 112 LVRHHNMH 119
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 645 PKQCTY--CTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTDENVNCDICKIVVLKSTLKSH 702
P C Y C +++ S L H RK+ + D K D + LK H
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFK--------DCERRFSRSDQLKRH 57
Query: 703 MRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCK--SCNRGFYSSSEYQAH 760
R H KPF C C++ F +L H TH PF C+ SC + F S E H
Sbjct: 58 QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGE--KPFSCRWPSCQKKFARSDELVRH 115
Query: 761 LRSH 764
H
Sbjct: 116 HNMH 119
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 768 RPFTC--NYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
RP+ C C R+F +K N H+R H +K + C IC + F + L H+R H GE+P
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 826 FSCHICGKTSTTKSNHNKHVKTH 848
F+C ICG+ T ++H K H
Sbjct: 63 FACDICGRKFATLHTRDRHTKIH 85
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 531 PLPCPV--CSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPF 588
P CPV C + F K +L H+R H KP++C +C ++F L+ H THTG PF
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 589 PCNMCDRHF 597
C++C R F
Sbjct: 64 ACDICGRKF 72
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 710 KPFSCTV--CKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNI 767
+P++C V C + F K NL H H + PF+C+ C R F + H+R+H
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQK--PFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKK 796
+PF C+ CGRKF RH + H +K
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 738 MHMPFKC--KSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELK 795
M P+ C +SC+R F + H+R H +PF C C R F + +H+R H +
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVH 820
K ++C ICG+ F + H ++H
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIH 85
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 510 DTCSEVFDKLKDYQEHIKNVH----PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVC 565
++C F + + HI+ +H P C +C + F L H+RTH KP+ CD+C
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDIC 68
Query: 566 DKSFVTAQKLSDHKNTH 582
+ F T H H
Sbjct: 69 GRKFATLHTRDRHTKIH 85
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 696 KSTLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSS 755
K+ L +H+RIH KPF C +C ++F L H TH PF C C R F +
Sbjct: 19 KTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE--KPFACDICGRKFATLH 76
Query: 756 EYQAHLRSH 764
H + H
Sbjct: 77 TRDRHTKIH 85
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 558 KPYKCDV--CDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNLAQ 605
+PY C V CD+ F L H HTG PF C +C R+F +++ L Q
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQ 52
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 651 CTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTDENVNCDICKIVVLKST-LKSHMRIHDNA 709
C +F+ ++L HIR + + C IC + T L H+R H
Sbjct: 12 CDRRFSQKTNLDTHIRIH-----------TGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHV 735
KPF+C +C + F T H H+
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHL 86
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 527 KNVHPLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKC--DVCDKSFVTAQKLSDHKNTHTG 584
+ +H P C+K + L H+RTH KPYKC + CD F + +L+ H HTG
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 585 NAPFPCNMCDRHFKRYSNLA 604
PF C +C+R F R +LA
Sbjct: 73 AKPFQCGVCNRSFSRSDHLA 92
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 746 SCNRGFYSSSEYQAHLRSHRNIRPFTCNY--CGRKFIRKFNCIRHVREHELKKKYSCTIC 803
C + + SS +AHLR+H +P+ C + C +F R RH R+H K + C +C
Sbjct: 22 GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 804 GKTFHRSYYLTAHVRVHN 821
++F RS +L H++ H
Sbjct: 82 NRSFSRSDHLALHMKRHQ 99
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 691 KIVVLKSTLKSHMRIHDNAKPFSCTV--CKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCN 748
K+ S LK+H+R H KP+ CT C F L H H PF+C CN
Sbjct: 25 KVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK--PFQCGVCN 82
Query: 749 RGFYSSSEYQAHLRSHRN 766
R F S H++ H+N
Sbjct: 83 RSFSRSDHLALHMKRHQN 100
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 768 RPFTCNY--CGRKFIRKFNCIRHVREHELKKKYSCTI--CGKTFHRSYYLTAHVRVHNGE 823
R C+Y C + + + + H+R H +K Y CT C F RS LT H R H G
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 824 RPFSCHICGKTSTTKSNHNKHVKTH 848
+PF C +C ++ + + H+K H
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 509 CD--TCSEVFDKLKDYQEHIK---NVHPLPCPV--CSKTFPSKPSLTLHMRTHLKIKPYK 561
CD C++V+ K + H++ P C C F LT H R H KP++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 562 CDVCDKSFVTAQKLSDHKNTH 582
C VC++SF + L+ H H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 648 CTY--CTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTDENVNCDICKIVVLKSTLKSHMRI 705
C Y CT+ +T +S L H+R + + P K T E CD L H R
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEK--PY--KCTWEG--CDW--RFARSDELTRHYRK 69
Query: 706 HDNAKPFSCTVCKKSFYTKWNLGLHQWTH 734
H AKPF C VC +SF +L LH H
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 742 FKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCT 801
F CK C + F SS HL H + RP+ C YCG++F +K + +H H +K + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 802 ICGKTFHRSYYLTAHVRVHNG 822
+CGK F +S L H R H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%)
Query: 770 FTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERPFSCH 829
F C CG+ F R H+ H + Y C CGK FH+ + H +H GE+P C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 830 ICGKTSTTKSNHNKHVKTH 848
+CGK + SN H + H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 532 LPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCN 591
C +C K+F +L+ H+ H +PY C C K F + H HTG P C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 592 MCDRHFKRYSNL 603
+C + F + SNL
Sbjct: 62 VCGKAFSQSSNL 73
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 684 NVNCDIC-KIVVLKSTLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPF 742
+ +C IC K STL +H+ IH + +P+ C C K F+ K ++ H + H P
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE--KPH 58
Query: 743 KCKSCNRGFYSSSEYQAHLRSH 764
KC+ C + F SS H R H
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKH 80
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 509 CDTCSEVFDKLKDYQEHI---KNVHPLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVC 565
C C + F + H+ + P PC C K F K + H H KP+KC VC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 566 DKSFVTAQKLSDHKNTHTG 584
K+F + L H HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 712 FSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNIRPFT 771
F C +C KSF L H H P+ C+ C + F+ S+ + H H +P
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTR--PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 772 CNYCGRKFIRKFNCIRHVREH 792
C CG+ F + N I H R+H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKH 80
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 30/109 (27%)
Query: 560 YKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNLAQXXXXXXXXXXXXXD 619
+ C +C KSF + LS H H+ P+PC C + F + S++ +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT------------ 49
Query: 620 FYCHCGEIFQSRGKLLWHQETHATVPKQCTYCTEKFTHTSSLTRHIRKN 668
+ H GE P +C C + F+ +S+L H RK+
Sbjct: 50 -FIHTGE-----------------KPHKCQVCGKAFSQSSNLITHSRKH 80
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERPFS 827
+ F C +CGR F + +N + H R H ++ Y+C IC K F R +L H +H+ E+PF
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 828 CHICGK 833
C CGK
Sbjct: 76 CQECGK 81
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 534 CPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMC 593
C C + F +L +H RTH +PY CD+C K+F L DH+ H+ PF C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 594 DRHFKRYSNLA 604
+ F + LA
Sbjct: 80 GKGFCQSRTLA 90
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%)
Query: 742 FKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCT 801
F CK C R F S H R+H + RP+TC+ C + F R+ + H H +K + C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 802 ICGKTFHRSYYLTAHVRVH 820
CGK F +S L H +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 680 KTDENVNCDICKIVVLKS-TLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRM 738
KT + C C KS L H R H + +P++C +C K+F + +L H++ H
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 739 HMPFKCKSCNRGFYSSSEYQAH 760
PFKC+ C +GF S H
Sbjct: 73 --PFKCQECGKGFCQSRTLAVH 92
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKT 834
KK++ C CG+ F +SY L H R H ERP++C IC K
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKA 54
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 648 CTYCTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTDEN-VNCDIC-KIVVLKSTLKSHMRI 705
C +C FT + +L H +R TDE CDIC K + L+ H I
Sbjct: 20 CKFCGRHFTKSYNLLIH------------ERTHTDERPYTCDICHKAFRRQDHLRDHRYI 67
Query: 706 HDNAKPFSCTVCKKSFYTKWNLGLHQWTHV 735
H KPF C C K F L +H+ H+
Sbjct: 68 HSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTH 582
P C +C K F + L H H K KP+KC C K F ++ L+ HK H
Sbjct: 45 PYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNL 603
K + C C + F + L H+ THT P+ C++C + F+R +L
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 745 KSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCTI-- 802
K C + F +S + HL +H R C CG+ F+ RH H +K + CT
Sbjct: 11 KGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 803 CGKTFHRSYYLTAHVRVHNGERPFSCHI--CGKTSTTKSNHNKHVKTH 848
CGK F + L HVR+H G+RP+ C C K +N H+ TH
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 717 CKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNY-- 774
C K F + H TH R+H+ C C + F SS+ + H H +PF C +
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHV---CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 775 CGRKFIRKFNCIRHVREHELKKKYSCTI--CGKTFHRSYYLTAHVRVH 820
CG++F FN HVR H + Y C C K F +S L +H+ H
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 512 CSEVFDKLKDYQEHIKNVHPLP--CPVCSKTFPSKPSLTLHMRTHLKIKPYKC--DVCDK 567
C+++F ++H+ P C C K F L H H KP++C + C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 568 SFVTAQKLSDHKNTHTGNAPFPC--NMCDRHFKRYSNL 603
F L H HTG+ P+ C + C++ F + +NL
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNL 110
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 697 STLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKC--KSCNRGFYSS 754
S ++ H+ H + C C K+F L HQ H PF+C + C + F
Sbjct: 21 SAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK--PFQCTFEGCGKRFSLD 77
Query: 755 SEYQAHLRSHRNIRPFTCNY--CGRKFIRKFNCIRHVREHELKK 796
+ H+R H RP+ C + C +KF + N H+ H K
Sbjct: 78 FNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 532 LPCP--VCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFP 589
+ CP C+K F ++ H+ TH + + C C K+FV + KL H+ HTG PF
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 590 CNM--CDRHFKRYSNL 603
C C + F NL
Sbjct: 65 CTFEGCGKRFSLDFNL 80
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 10/114 (8%)
Query: 624 CGEIFQSRGKLLWHQETHATVPKQCTYCTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTDE 683
C ++F+ + H TH C C + F +S L RH + + + +
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 684 NVNCDICKIVVLKSTLKSHMRIHDNAKPFSCTV--CKKSFYTKWNLGLHQWTHV 735
+ D L++H+RIH +P+ C C K F NL H TH
Sbjct: 73 RFSLDF--------NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 509 CDTCSEVF---DKLKDYQEHIKNVHPLPCPV--CSKTFPSKPSLTLHMRTHLKIKPYKC- 562
C C + F KLK +Q P C C K F +L H+R H +PY C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 563 -DVCDKSFVTAQKLSDHKNTHT 583
D C+K F + L H TH
Sbjct: 97 FDGCNKKFAQSTNLKSHILTHA 118
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 533 PCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNM 592
PC C K+F K HM HL ++PY C VC K F L H HTG P+ CN+
Sbjct: 12 PCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 593 CDRHF 597
C + F
Sbjct: 71 CAKRF 75
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 775 CGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKT 834
CG+ F K RH+ H + Y C +CGK F ++L H+++H G +P+ C+IC K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 835 STTKSNHNKHV 845
+ + ++HV
Sbjct: 75 FMWRDSFHRHV 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 747 CNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKT 806
C + F S+ H+ H +RP+ C CG+KF K + + H++ H K Y C IC K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 807 F 807
F
Sbjct: 75 F 75
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 512 CSEVFDKLKDYQEHIK---NVHPLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKS 568
C + F H+ + P C VC K F K L HM+ H IKPY+C++C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 569 FVTAQKLSDH 578
F+ H
Sbjct: 75 FMWRDSFHRH 84
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 30/108 (27%)
Query: 682 DENVNCDICKIVVLKSTLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMP 741
D+ C K KS HM +H +P+ C VC K F K +L
Sbjct: 8 DKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHL-------------- 53
Query: 742 FKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHV 789
H++ H I+P+ CN C ++F+ + + RHV
Sbjct: 54 ----------------VGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 651 CTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTDENVNCDIC-KIVVLKSTLKSHMRIHDNA 709
C + FTH S RH+ + R C +C K +K L HM+IH
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLR-----------PYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 710 KPFSCTVCKKSFYTKWNLGLHQ 731
KP+ C +C K F W H+
Sbjct: 64 KPYECNICAKRFM--WRDSFHR 83
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTH 848
K Y C CGK+F H+ +H G RP+ C +CGK K + H+K H
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 33/109 (30%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNLAQXXXXXXXXXXXX 617
K Y C C KSF + H + H G P+ C +
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGV------------------------- 42
Query: 618 XDFYCHCGEIFQSRGKLLWHQETHATV-PKQCTYCTEKFTHTSSLTRHI 665
CG+ F+ + L+ H + H + P +C C ++F S RH+
Sbjct: 43 ------CGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 537 CSKTFPSKPSLTLHMRTHLKIKPYKCDV--CDKSFVTAQKLSDHKNTHTGNAPFPCNMCD 594
C KT+ L H+RTH KPY CD C F + +L+ H HTG+ PF C CD
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 595 RHFKRYSNLA 604
R F R +LA
Sbjct: 74 RAFSRSDHLA 83
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 771 TCNY--CGRKFIRKFNCIRHVREHELKKKYSCTI--CGKTFHRSYYLTAHVRVHNGERPF 826
TC+Y CG+ + + + H+R H +K Y C CG F RS LT H R H G RPF
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 67
Query: 827 SCHICGKTSTTKSNHNKHVKTH 848
C C + + + H+K H
Sbjct: 68 QCQKCDRAFSRSDHLALHMKRH 89
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 717 CKKSFYTKWNLGLHQWTHVSRMHMPFKCK--SCNRGFYSSSEYQAHLRSHRNIRPFTCNY 774
C K++ +L H TH P+ C C F S E H R H RPF C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEK--PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 775 CGRKFIRKFNCIRHVREH 792
C R F R + H++ H
Sbjct: 72 CDRAFSRSDHLALHMKRH 89
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 537 CSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTH 582
C F LT H R H +P++C CD++F + L+ H H
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 643 TVPKQCTY--CTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTDENVNCDICKIVVLKS-TL 699
T C Y C + +T +S L H+R + + D D C +S L
Sbjct: 4 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCD---------WDGCGWKFARSDEL 54
Query: 700 KSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTH 734
H R H +PF C C ++F +L LH H
Sbjct: 55 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 537 CSKTFPSKPSLTLHMRTHLKIKPYKCDV--CDKSFVTAQKLSDHKNTHTGNAPFPCNMCD 594
C KT+ L H+RTH KPY CD C F + +L+ H HTG+ PF C CD
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 595 RHFKRYSNLA 604
R F R +LA
Sbjct: 73 RAFSRSDHLA 82
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 771 TCNY--CGRKFIRKFNCIRHVREHELKKKYSCTI--CGKTFHRSYYLTAHVRVHNGERPF 826
TC+Y CG+ + + + H+R H +K Y C CG F RS LT H R H G RPF
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 827 SCHICGKTSTTKSNHNKHVKTH 848
C C + + + H+K H
Sbjct: 67 QCQKCDRAFSRSDHLALHMKRH 88
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 717 CKKSFYTKWNLGLHQWTHVSRMHMPFKCK--SCNRGFYSSSEYQAHLRSHRNIRPFTCNY 774
C K++ +L H TH P+ C C F S E H R H RPF C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEK--PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 775 CGRKFIRKFNCIRHVREH 792
C R F R + H++ H
Sbjct: 71 CDRAFSRSDHLALHMKRH 88
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 537 CSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTH 582
C F LT H R H +P++C CD++F + L+ H H
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 643 TVPKQCTY--CTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTDENVNCDICKIVVLKS-TL 699
T C Y C + +T +S L H+R + + D D C +S L
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCD---------WDGCGWKFARSDEL 53
Query: 700 KSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTH 734
H R H +PF C C ++F +L LH H
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 32/63 (50%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFPC 590
P C VC K F K L HMR H +KPYKC CD + + L+ H H+ PF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 591 NMC 593
+C
Sbjct: 68 QIC 70
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 38/80 (47%)
Query: 769 PFTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERPFSC 828
P C CG+ F RK H+R H K Y C C S L H+R+H+ ERPF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 829 HICGKTSTTKSNHNKHVKTH 848
IC S S H+++H
Sbjct: 68 QICPYASRNSSQLTVHLRSH 87
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 741 PFKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELKKKYSC 800
P KC+ C + F + + H+R H ++P+ C C + +H+R H ++ + C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 801 TICGKTFHRSYYLTAHVRVHNGE 823
IC S LT H+R H G+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 508 RCDTCSEVF---DKLKDYQEHIKNVHPLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDV 564
+C+ C + F DKLK + V P C C SL H+R H +P+KC +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 565 CDKSFVTAQKLSDHKNTHTGNA 586
C + + +L+ H +HTG++
Sbjct: 70 CPYASRNSSQLTVHLRSHTGDS 91
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 12/96 (12%)
Query: 642 ATVPKQCTYCTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTDENVNCDICKIVVL-KSTLK 700
++ P +C C + F+ L H+R + + C C S+L
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVK-----------PYKCKTCDYAAADSSSLN 53
Query: 701 SHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVS 736
H+RIH + +PF C +C + L +H +H
Sbjct: 54 KHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 743 KCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELKKK---YS 799
+C +C++ F S + H R H +PF C CG+ + RK N + H + + + ++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 800 CTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTHHA 850
C++C +TF R L H+ H GE P+ C C + K + H+ H+
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 684 NVNCDIC-KIVVLKSTLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTH-VSRMHMP 741
V C C K + K LK H R H KPF C C K ++ K NL H+ + ++R
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 742 FKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRK 782
F C C F E + H+ SH P+ C+ C ++F++K
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQK 107
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 561 KCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNLAQXXXXXXXXXXXXXDF 620
+C C K F++ L H HTG PF C C + + R NL + F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 621 YCH-CGEIFQSRGKLLWHQETH-ATVPKQCTYCTEKFTHTSSLTRHIRKNHD 670
C C E F+ R +L H +H +P +C+ C+++F L H+ K H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 800 CTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTHHARETIN 855
C C K F YYL H R H GE+PF C CGK K N + H AR +N
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKEN----LLEHEARNCMN 61
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 509 CDTCSEVFDKLKDYQEHI------KNVHPLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKC 562
C C + + + ++ EH ++ C VC +TF + L LHM +H PYKC
Sbjct: 38 CPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKC 97
Query: 563 DVCDKSFVTAQKLSDH 578
C + F+ + L H
Sbjct: 98 SSCSQQFMQKKDLQSH 113
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%)
Query: 534 CPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
C C K+F L+ H RTH KPYKCD C K+F+ L H HTG+ P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNL 603
+ YKCD C KSF + LS H+ THTG P+ C+ C + F + S+L
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 765 RNIRPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGER 824
R R + C+ CG+ F + +H R H +K Y C CGK F + +L H RVH G
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Query: 825 PFS 827
P S
Sbjct: 74 PSS 76
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTH 848
+++Y C CGK+F S L+ H R H GE+P+ C CGK +S+ H + H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 737 RMHMPFKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREH 792
R +KC C + F SS+ H R+H +P+ C+ CG+ FI++ + I H R H
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNIRP 769
+ + C C KSF +L H+ TH P+KC C + F S H R H P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEK--PYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 687 CDIC-KIVVLKSTLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVS 736
CD C K S L H R H KP+ C C K+F + +L H H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 503 KNKQRRCDTCSEVFDKLKDYQEHIK---NVHPLPCPVCSKTFPSKPSLTLHMRTHLKIKP 559
+ ++ +CD C + F D +H + P C C K F + L H R H P
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 647 QCTYCTEKFTHTSSLTRHIRKNHDPRYLPVDRKKTDENVNCDIC-KIVVLKSTLKSHMRI 705
+C C + F+H+S L++H R + ++ CD C K + +S L H R+
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTH-----------TGEKPYKCDECGKAFIQRSHLIGHHRV 68
Query: 706 HDNAKPFS 713
H + P S
Sbjct: 69 HTGSGPSS 76
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTHH 849
K + C IC + F RS +LT H+R H GE+PF+C ICG+ +H H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 741 PFKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIR 781
PF+C+ C R F S H+R+H +PF C+ CGRKF R
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 557 IKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKR 599
+KP++C +C ++F + L+ H THTG PF C++C R F R
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKN 580
P C +C + F LT H+RTH KP+ CD+C + F + + H++
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 767 IRPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRS 810
++PF C C R F R + H+R H +K ++C ICG+ F RS
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 44
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAH 760
KPF C +C ++F +L H TH PF C C R F S E + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG--EKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 686 NCDICKIVVLKST-LKSHMRIHDNAKPFSCTVCKKSF 721
C IC +S L +H+R H KPF+C +C + F
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 534 CPVCSKTFPSKPSLTLHMRTHLKIKPYKCDV--CDKSFVTAQKLSDHKNTHTGNAPFPCN 591
CP K+F +K L H+R H KP+ C C K F ++ L HK THTG PF C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 592 M--CDRHFKRYSN 602
CDR F S+
Sbjct: 125 FEGCDRRFANSSD 137
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 731 QWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYC---------GRKFIR 781
+W +++ P K SC+R F + E H+ P N+ G+ F
Sbjct: 17 KWIDEAQLSRPKK--SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA 74
Query: 782 KFNCIRHVREHELKKKYSCTI--CGKTFHRSYYLTAHVRVHNGERPFSCHI--CGKTSTT 837
K+ + H+R H +K + C CGK F RS L H R H GE+PF C C +
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFAN 134
Query: 838 KSNHNKHVKTH 848
S+ KH+ H
Sbjct: 135 SSDRKKHMHVH 145
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 531 PLPCPV--CSKTFPSKPSLTLHMRTHLKIKPYKCDV--CDKSFVTAQKLSDHKNTHTGNA 586
P PCP C K F +L +H RTH KP+KC+ CD+ F + H + HT +
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Query: 587 PFP 589
P
Sbjct: 150 SGP 152
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 691 KIVVLKSTLKSHMRIHDNAKPFSCTV--CKKSFYTKWNLGLHQWTHVSRMHMPFKC--KS 746
K K L +H+R+H KPF C C K F NL +H+ TH PFKC +
Sbjct: 70 KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE--KPFKCEFEG 127
Query: 747 CNRGFYSSSEYQAHLRSH 764
C+R F +SS+ + H+ H
Sbjct: 128 CDRRFANSSDRKKHMHVH 145
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 804 GKTFHRSYYLTAHVRVHNGERPFSCHI--CGKTSTTKSNHNKHVKTHHARETINTE 857
GK+F Y L H+RVH GE+PF C CGK N H +TH + E
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 719 KSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNY--CG 776
KSF K+ L H H P C + F S + H R+H +PF C + C
Sbjct: 70 KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCD 129
Query: 777 RKFIRKFNCIRHVREH 792
R+F + +H+ H
Sbjct: 130 RRFANSSDRKKHMHVH 145
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 771 TCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGE--RPFSC 828
C CG+ F ++ RH H +K YSC +CG F R ++ HVR H+G +P+ C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 829 HICGKTSTTKSNHNKHVKTHHA 850
CGK + + N H+K H+
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHS 90
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 744 CKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHE--LKKKYSCT 801
C+ C + F H SH +P++C CG +F RK HVR H+ + K Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 802 ICGKTFHRSYYLTAHVR-VHNG 822
CGK F R +L H++ VH+G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 684 NVNCDIC-KIVVLKSTLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPF 742
V C+IC KI L H H KP+SC VC F K + H +H + P+
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 743 KCKSCNRGFYSSSEYQAHLR 762
C+SC +GF H++
Sbjct: 67 ICQSCGKGFSRPDHLNGHIK 86
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 532 LPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNA--PFP 589
+ C +C K F L H +H KPY C VC F ++S H +H G+ P+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 590 CNMCDRHFKRYSNL 603
C C + F R +L
Sbjct: 68 CQSCGKGFSRPDHL 81
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 509 CDTCSEVFDKLKDYQEHI---KNVHPLPCPVCSKTFPSKPSLTLHMRTHLK--IKPYKCD 563
C+ C ++F + H P CPVC F K ++ H+R+H KPY C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 564 VCDKSFVTAQKLSDH-KNTHTG 584
C K F L+ H K H+G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 708 NAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRN- 766
+ +C +C K F ++L H+ +H P+ C C F H+RSH
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEK--PYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 767 -IRPFTCNYCGRKFIRKFNCIRHVRE 791
+P+ C CG+ F R + H+++
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 562 CDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNLA 604
C++C K F L+ HK +H+G P+ C +C FKR ++
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMS 52
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNL 603
KPYKCD C SF L+ HK HTG P+ CN+C F R +NL
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+P+ C+ C F K N H H +K Y C ICG F+R L H R+H+GE+P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
P C C +F K +L H H KPY+C++C F L H H+G P
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTH 848
K Y C C +F L +H VH GE+P+ C+ICG +N H + H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 741 PFKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELKK 796
P+KC C F +H H +P+ CN CG +F R N H R H +K
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNIRP 769
KP+ C C+ SF K NL H+ H P++C C F + + H R H +P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEK--PYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 682 DENVNCDICKIVV-LKSTLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTH 734
D+ CD C+ K L SH +H KP+ C +C F NL H H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTH 848
+K Y C CGK F RS L H RVH GE+P+ C CGK + S H + H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 24/53 (45%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHT 583
P C C K F L H R H KPYKC C K+F L +H+ HT
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVH 820
+P+ C CG+ F R ++H R H +K Y C CGK F ++ L H R+H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNL 603
KPY C C K+F + L H+ HTG P+ C C + F + S L
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL 58
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 741 PFKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREH 792
P+ C C + F SS H R H +P+ C CG+ F + I H R H
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSH 764
KP+ C C K+F L HQ H P+KC C + F +S H R H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGE--KPYKCLECGKAFSQNSGLINHQRIH 65
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 697 STLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVS 736
S L H R+H KP+ C C K+F L HQ H S
Sbjct: 28 SILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 800 CTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTHH 849
C+ CGK F +YYL H+R H GE+P+ C C + K++ H++ HH
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 534 CPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLS 576
C C K F S L +H+RTH KPYKC+ C+ + AQK S
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCE--YAAAQKTS 47
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 561 KCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMCD 594
+C C K F + L+ H THTG P+ C C+
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCE 39
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 508 RCDTCSEVFDKLKDYQEHIKNVH------PLPC--PVCSKT---FPSKPSLTLHMRTHLK 556
R D CS+ FD + HI + H C CS+ F ++ L +HMR H
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 557 IKPYKC--DVCDKSFVTAQKLSDHKNTHTGNAPFPCNM--CDRHFKRYSNLAQ 605
KP+KC + C KS+ + L H +HTG P+ C C + F S+ A+
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK 117
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 746 SCNRGFYSSSEYQAHLRS---HRNIRPFTCNYCG-----RKFIRKFNCIRHVREHELKKK 797
C++ F S + H+ S H + F C++ G R F ++ + H+R H +K
Sbjct: 8 GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP 67
Query: 798 YSCTI--CGKTFHRSYYLTAHVRVHNGERPFSC--HICGKTSTTKSNHNKHVKTHHARE 852
+ CT C K++ R L H+R H GE+P+ C C K + S+ KH H+ E
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 20/129 (15%)
Query: 731 QWTHVSRMHMPFKCKSCNRGFYSSSEYQ--AHLRSHRNIRPFTCNY--CGRKFIRKFNCI 786
W SR PFK ++Y H+R H +P C + C + + R N
Sbjct: 38 HWGGCSRELRPFK-----------AQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLK 86
Query: 787 RHVREHELKKKYSCT--ICGKTFHRSYYLTAHV-RVHNGERPFSCHI--CGKTSTTKSNH 841
H+R H +K Y C C K F + H R H+ E+P+ C + C K T S+
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSL 146
Query: 842 NKHVKTHHA 850
KHVKT H
Sbjct: 147 RKHVKTVHG 155
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 537 CSKTFPSKPSLTLHMRTHLKIKPYKC--DVCDKSFVTAQKLSDHKN-THTGNAPFPCNM 592
C K++ +L H+R+H KPY C + C K+F A + H+N TH+ P+ C +
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL 133
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 699 LKSHMRIHDNAKPFSCTV--CKKSFYTKWNLGLHQWTHVSRMHMPFKC--KSCNRGFYSS 754
L HMR H KP CT C+KS+ NL H +H P+ C + C++ F ++
Sbjct: 55 LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE--KPYMCEHEGCSKAFSNA 112
Query: 755 SEYQAHL-RSHRNIRPFTC 772
S+ H R+H N +P+ C
Sbjct: 113 SDRAKHQNRTHSNEKPYVC 131
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 767 IRPFTC--NYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVH 820
+RP+ C C R+F R RH+R H +K + C IC + F RS +LT H+R H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 796 KKYSCTI--CGKTFHRSYYLTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTH 848
+ Y+C + C + F RS LT H+R+H G++PF C IC + + + H++TH
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 556 KIKPYKCDV--CDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNLA 604
K++PY C V CD+ F + +L+ H HTG PF C +C R+F R +L
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 526 IKNVHPLPCPV--CSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHT 583
+ + P CPV C + F LT H+R H KP++C +C ++F + L+ H THT
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 741 PFKC--KSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREH 792
P+ C +SC+R F S E H+R H +PF C C R F R + H+R H
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 699 LKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTH 734
L H+RIH KPF C +C ++F +L H TH
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 510 DTCSEVFDKLKDYQEHIKNVH----PLPCPVCSKTFPSKPSLTLHMRTH 554
++C F + + HI+ +H P C +C + F LT H+RTH
Sbjct: 25 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 770 FTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERPFSCH 829
+ C C R ++ + RH H +KKY C C K F + Y T H H GER + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 830 ICGKTSTTKSNHNKHVKTHHARE 852
CGK+ + H+K+ H+++
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQD 105
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 534 CPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMC 593
C VC +++ SL H H K Y C C+K F A+ + H+ HTG + C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 594 DRHFKRYSNLA 604
+ F Y ++
Sbjct: 85 GKSFINYQFMS 95
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 509 CDTCSEVFDKLKDYQEHIKNVHP----LPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDV 564
C C + L + H N+H PC C K FP T H H + Y+C
Sbjct: 25 CIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA 83
Query: 565 CDKSFVTAQKLSDH-KNTHTGN 585
C KSF+ Q +S H K+ H+ +
Sbjct: 84 CGKSFINYQFMSSHIKSVHSQD 105
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 39/84 (46%)
Query: 742 FKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCT 801
+ C C R + + + H H + + C YC + F +H H +++Y C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 802 ICGKTFHRSYYLTAHVRVHNGERP 825
CGK+F ++++H++ + + P
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDP 106
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 560 YKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHF 597
Y C VC +S+V L H N H+ +PC C++ F
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF 60
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 705 IHDNAKPFSCTVCKKSFYT----KWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAH 760
I D + C VCK+S+ + + +H W + C+ C + F + H
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWE------KKYPCRYCEKVFPLAEYRTKH 69
Query: 761 LRSHRNIRPFTCNYCGRKFI 780
H R + C CG+ FI
Sbjct: 70 EIHHTGERRYQCLACGKSFI 89
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 687 CDICK-IVVLKSTLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCK 745
C +CK V ++L+ H IH K + C C+K F H+ H ++C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE--RRYQCL 82
Query: 746 SCNRGFYSSSEYQAHLRS 763
+C + F + +H++S
Sbjct: 83 ACGKSFINYQFMSSHIKS 100
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 537 CSKTFPSKPSLTLHMRTHLKIKPYKC--DVCDKSFVTAQKLSDHKNTHTGNAPFPC--NM 592
C + L H+ H KP+ C + C+K F + L+ H THTG F C +
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 593 CDRHFKRYSNLAQXXXXXXXXXXXXXDFYCH---CGEIFQSRGKLLWHQETHA-TVPKQC 648
CD F +N+ + + CH CG+ F+ +L HQ +H +P +C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICV--YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137
Query: 649 TY--CTEKFTHTSSLTRH 664
+ C ++F+ S L RH
Sbjct: 138 PHEGCDKRFSLPSRLKRH 155
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 56/140 (40%), Gaps = 8/140 (5%)
Query: 717 CKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNY-- 774
C ++ W L H H P K + C +GF S H +H + FTC+
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 775 CGRKFIRKFNCIRHV-REHELK-KKYSCTI--CGKTFHRSYYLTAHVRVHNGERPFSC-- 828
C +F K N +H R H +K Y C CGK F + L H H + P+ C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 829 HICGKTSTTKSNHNKHVKTH 848
C K + S +H K H
Sbjct: 140 EGCDKRFSLPSRLKRHEKVH 159
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 478 PIKFENSNSFGTQIQEFLPPSLTSIKNKQRRCDT--CSEVFDKLKDYQEHIKNVHPLPCP 535
P K E T + SLT K CD+ C F + ++H H +
Sbjct: 44 PCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKIC 103
Query: 536 V-------CSKTFPSKPSLTLHMRTHLKIKPYKC--DVCDKSFVTAQKLSDHKNTHTGNA 586
V C K F L +H +H + PY+C + CDK F +L H+ H G
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-- 161
Query: 587 PFPC 590
+PC
Sbjct: 162 -YPC 164
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 11/154 (7%)
Query: 699 LKSHMRIHDNAKPFSCT--VCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSE 756
L++H+ H KPF C C+K F + +L H TH + C+ F + +
Sbjct: 30 LQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN 89
Query: 757 YQAHLRSHRNIR--PFTCNY--CGRKFIRKFNCIRHVREHELKKKYSC--TICGKTFHRS 810
+ H NI+ + C++ CG+ F + H H + Y C C K F
Sbjct: 90 MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP 149
Query: 811 YYLTAHVRVHNG---ERPFSCHICGKTSTTKSNH 841
L H +VH G ++ SC GKT T H
Sbjct: 150 SRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 183
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTH 848
++ + C CGKT+ + L+ H R H G RP SC CGK +S N+H+K H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVRVH 820
RPF CN+CG+ + RH R H + SC CGK F + H++VH
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKNTH 582
P C C KT+ L+ H R HL +P C C K F +++ H H
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRN 766
+PF C C K++ L H+ H+ + P C C + F SE HL+ H+N
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLG--YRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKRYSNL 603
+P+ C+ C K++ A LS H+ H G P C C + F+ S +
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEV 48
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 741 PFKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELK 795
PF C C + + +S H R+H RP +C CG+ F + RH++ H+ K
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 742 FKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVRE 791
F C+ C R F + H RSH N +P+ C C R F R+ IRH ++
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 560 YKCDVCDKSFVTAQKLSDHKNTHTGNAPFPCNMCDRHFKR 599
+ C+VC ++F + L H +HT P+PC +C+R F R
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR 42
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 534 CPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDH-KNTHTGN 585
C VC++ F + L H R+H KPY C +C+++F L H + H+GN
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 770 FTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHV-RVHNG 822
F C C R F R+ + RH R H +K Y C +C + F R L H ++H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 798 YSCTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTHHA 850
+ C +C + F R +L H R H E+P+ C +C + T + +H + H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 32.7 bits (73), Expect = 0.78, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 687 CDIC-KIVVLKSTLKSHMRIHDNAKPFSCTVCKKSF 721
C++C + + LK H R H N KP+ C +C ++F
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 712 FSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGF 751
F C VC ++F + +L H +H + P+ C CNR F
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN--EKPYPCGLCNRAF 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 535 PVCSKTFPSKPSLTLHMRTHLKIKPYKCD--VCDKSFVTAQKLSDHKNTH 582
P C KT+ L H RTH KP+ C C++ F + +LS H+ TH
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 803 CGKTFHRSYYLTAHVRVHNGERPFSC 828
CGKT+ +S +L AH R H GE+PFSC
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSC 50
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 746 SCNRGFYSSSEYQAHLRSHRNIRPFTCNY--CGRKFIRKFNCIRHVREH 792
C + ++ SS +AH R+H +PF+C++ C R+F R RH R H
Sbjct: 24 GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 556 KIKPYKCD--VCDKSFVTAQKLSDHKNTHTGNAPFPCNM--CDRHFKRYSNLAQ 605
+I+ + C C K++ + L H THTG PF C+ C+R F R L++
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 766 NIRPFTCNY--CGRKFIRKFNCIRHVREHELKKKYSCTI--CGKTFHRSYYLTAHVRVH 820
IR C++ CG+ + + + H R H +K +SC+ C + F RS L+ H R H
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKCDVC KSF L+ H+ HTG P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C +C K+F LT H R+H GE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKP 559
P C VC K+F SLT+H R H KP
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C +CGK F +S +L H RVH GE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
K YKCDVC K F + L H+ HTG P
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGKTF + L+AH R H GE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY C+ C K+F LS H+ THTG P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKP 559
P C C KTF K L+ H RTH KP
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 537 CSKTFPSKPSLTLHMRTHLKIKPYKC--DVCDKSFVTAQKLSDHKNTHTGNAPFPC--NM 592
C + L H+ H KP+ C + C+K F + L+ H THTG F C +
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 593 CD----------RHFKRYSNL 603
CD +HF R+ N+
Sbjct: 71 CDLRFTTKANMKKHFNRFHNI 91
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 796 KKYSCTI--CGKTFHRSYYLTAHVRVHNGERPFSC--HICGKTSTTKSNHNKHVKTH 848
K+Y C+ CG +++++ L AH+ H GE+PF C C K T+ + +H TH
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 58
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 768 RPFTCNY--CGRKFIRKFNCIRHVREHELKKKYSCT--ICGKTFHRSYYLTAHVRVHNGE 823
+ + C++ CG + + + H+ +H +K + C C K F ++LT H H GE
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 824 RPFSCHI--CGKTSTTKSNHNKHVKTHH 849
+ F+C C TTK+N KH H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 717 CKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNY-- 774
C ++ W L H H P K + C +GF S H +H + FTC+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 775 CGRKFIRKFNCIRHV-REHELK 795
C +F K N +H R H +K
Sbjct: 71 CDLRFTTKANMKKHFNRFHNIK 92
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 699 LKSHMRIHDNAKPFSCT--VCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSE 756
L++H+ H KPF C C+K F + +L H TH + C+ F + +
Sbjct: 21 LQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN 80
Query: 757 YQAHLRSHRNIR 768
+ H NI+
Sbjct: 81 MKKHFNRFHNIK 92
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 552 RTHLKIKPYKCDVCDKSFVTAQKLSDH-KNTHTGN---APFPCNMCDRHFKRYSNLAQ 605
RTH KPY C CDK+F Q L H K H N A F C+ C + F R + +A+
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 30/91 (32%)
Query: 701 SHMRIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAH 760
S R H KP++C+ C K+F K L + H R H P
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDM----HFKRYHDP------------------- 41
Query: 761 LRSHRNIRP--FTCNYCGRKFIRKFNCIRHV 789
N P F C+ CG+ F R+ RH
Sbjct: 42 -----NFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 790 REHELKKKYSCTICGKTFHRSYYLTAHV-RVHNGE---RPFSCHICGKTSTTKSNHNKHV 845
R H +K Y+C+ C KTF + L H R H+ F C CGKT T ++ +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 846 KTHHARETINTE 857
+ + E
Sbjct: 68 DNCAGPDGVEGE 79
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 762 RSHRNIRPFTCNYCGRKFIRKFNCIRHVREHE----LKKKYSCTICGKTFHRSYYLTAHV 817
R+H +P+ C++C + F +K H + + + + C+ CGKTF R + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 645 PKQCTYCTEKFTHTSSLTRHIRKNHDPRYLPV 676
P C++C + F L H ++ HDP ++P
Sbjct: 15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPA 46
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KP++CD CDKSF L+ H+ HTG P
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K + C C K+F + L +H +H GE+P
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 687 CDICKIVVLK-STLKSHMRIHDNAKPFSCTVCKKSFYTKWNLGLH 730
C+ C I K S LK H+R H + +P+ CT C SF TK NL H
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 797 KYSCTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKT 847
KY C CG + L H+R H RP+ C C + TK N KH+K+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 744 CKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVR 790
C+ C S + H+R+H ++RP+ C YC F K N +H++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 544 KPS-LTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDH 578
KPS L H+RTH ++PY C C+ SF T L+ H
Sbjct: 13 KPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C+ CGK FHR +L H R+H G RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC C K+F L++H+ HTG P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C+ CGK F YL H+R H+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKP 559
P C C K F SK L +HMRTH KP
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY C C K+F + L H TH+G P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY+C VC K+F L+ H+ THTG P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C +C K F + +L H + H GE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSR 737
KP+ C VC K+F K +L HQ TH
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKP 559
P C VCSK F K L H +TH KP
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
K Y C+ CGK F YL H+R H GE+P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 528 NVHPLPCPVCSKTFPSKPSLTLHMRTHLKIKP 559
V P C C K F SK L +HMRTH KP
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 557 IKPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
+KPY C C K+F + L H THTG P
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K+Y C CGK F R+ L+ H ++H GE+P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
K YKC+ C K F +LS H+ HTG P
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C +CGK F S +L H VH+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC VC K+F + L H + H+G P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 508 RCDTCSEVFDKLKDYQEHI-----KNVHPLPCPVCSKTFPSKPSLTLHMRTHLKI 557
RC CS V+ + ++ H +NV PCP C K F K ++T H++ KI
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 742 FKCKSCNRGFYSSSEYQAH-LRSH-RNIRPFTCNYCGRKFIRKFNCIRHVR 790
++CK C+R + S + H + SH RN++ + C +C ++F RK N HV+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC+ C K+F KL+ H+ HTG P
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F ++ L H R+H GE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K + C CGK F ++ +L +H+R+H GE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KP+KC C K+F L+ H HTG P
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 741 PFKCKSCNRGFYSSSEYQAHLRSHRNIRP 769
PFKCK C + F + +HLR H +P
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
KK C CGKTF +S L+ H R+H+GE+P
Sbjct: 8 KKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F + YL+ H R+H GE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC+ C K F LS H+ HTG P
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 798 YSCTICGKTFHRSYYLTAHVRVHNGERP 825
Y C CGK F R Y L +H R H GE+P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 769 PFTCNYCGRKFIRKFNCIRHVREHELKK 796
P+ C+ CG+ F RK+ I H R H +K
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 559 PYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
PY+C C K+F +L H+ TH G P
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F ++ +LT H R+H GE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC+ C K F L++H HTG P
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 741 PFKCKSCNRGFYSSSEYQAHLRSHRNIRP 769
PFKC+ C +GFY++S+ +H RSH +P
Sbjct: 12 PFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KP+KC+ C K F T + H+ +H+G P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K + C CGK F+ + +H R H+GE+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERPFS 827
+K+ +C ICGK F Y+L H H+GE+P+S
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY+C VC K+F Q LS H+ H+G P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C++CGK F L+ H R+H+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKP 559
P C VC K F + SL++H R H KP
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSR 737
KP+ C+VC K+F + +L +HQ H +
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGK 38
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F ++ +L H RVH GE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY+C C K+F L H+ HTG P
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C+ICGK+F + L H ++H GE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY+C +C KSF +L H+ HTG P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSR 737
KP+ C++C KSF K L +HQ H
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGE 38
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
KK + C C KTF +S LT H R+H GE+P
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
K +KC+ C K+F + L+ H+ HTG P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY+C+ C K+F KL+ H+ HTG P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
K Y C CGK F ++ L H RVH GE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F + LT H R+H GE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY+C C K+F L+ H+ HTG P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKP 559
P C C K F K +LT H R H KP
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 622 CH----CGEIFQSRGKLLWH-QETHATVPKQCTYCTEKFTHTSSLTRHIRKNH 669
CH CGE F S+G H + HA C YC F + LTRHI K H
Sbjct: 28 CHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 534 CPVCSKTFPSKPSLTLHMRTHLKIKPYKCDVCDKSFVTAQKLSDHKN 580
CPVC ++F SK + H+R + + C C +F ++ L+ H N
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN 77
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 509 CDTCSEVFDKLKDYQEHIKNVHP---LPCPVCSKTFPSKPSLTLHM 551
C C E F + H++ +H PC C TF S P LT H+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 772 CNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHV 817
C CG F K RH+R + + C C TF+ S LT H+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 800 CTICGKTFHRSYYLTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTHHARE 852
C +CG++F H+R+ + + F C C T + +H+ H E
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE 83
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 18/48 (37%)
Query: 744 CKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVRE 791
C C F S + HLR + F C YC F RH+ +
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KP+KCD+C KSF +L+ H HT P
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 823 ERPFSCHICGKTSTTKSNHNKHVKTHHA 850
E+PF C ICGK+ +S N+H H A
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTA 37
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K + C ICGK+F L H VH E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY+CDVC K+F L+ H+ H+G P
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C +C K F LT H RVH+GE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKP 559
P C VC K F SLT H R H KP
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K + C CGK++++ +LT H RVH GE+P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KP+KC C KS+ L+ H+ HTG P
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY C+ C K+F+ +L +H+ HTG P
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y+C CGK F L H R+H GE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
++ Y C+ CGK F R L H R+H GE+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y+C CGK+F R+ L H R+H+GE+P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
K + CT CGK F R L+ H ++H GE+P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K + C CGK+F S L H R+H GE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KP++C C KSF + +L+ H+ HTG P
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVS 736
KPF C+ C+K+F TK NL +HQ TH
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTG 37
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KP++C C K+F T L H+ THTG P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKP 559
P C C K F +K +L +H RTH KP
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K + C+ C K F+ L H R H GE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC+ C K+F L+ H+ TH+G P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTH 734
KP+ C C K+F + +L +HQ TH
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATH 35
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F L H H+GE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 537 CSKTFPSKPSLTLHMRTHLKIKPYKC--DVCDKSFVTAQKLSDHKNTHTGNAPFPC 590
C K F L +H +H + PY+C + CDK F +L H+ H G +PC
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC 61
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 537 CSKTFPSKPSLTLHMRTHLKIKPYKC--DVCDKSFVTAQKLSDHKNTHTGNAPFPC 590
C K F L +H +H + PY+C + CDK F +L H+ H G +PC
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC 61
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY C+ C KSF+ L+ H+ HTG P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK+F + +L H R+H GE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKK 796
+P+ CN CG+ FI+K + RH R H +K
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y+C CGK+F + L H RVH+GE+P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY C C KSF A L H+ H+G P
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGE 823
+K YSC +CGK F S +L H+RVH E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHT 583
KPY C+VC K+FV + L+ H HT
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 823 ERPFSCHICGKTSTTKSNHNKHVKTHHARETIN 855
E+P+SC++CGK ++ N+H++ H +ET++
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRV-HTQETLS 41
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREH 792
+P++CN CG+ F+ + +H+R H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC+ C K F L+ H+ HTG P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F ++ +L H RVH G +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
+P+KC+ C KSF+ + L H+ HTG P
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
++ + C CGK+F +S +L H R+H GE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKK 796
RP CN CG+ FI+ + I+H R H +K
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F S L H R+H GE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY CD C K+F + +L H+ HTG P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKK 796
+P+ C+YCG+ F +RH R H +K
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC+ C K F L+ H+ HTG P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F ++ +L H +H GE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|1WJP|A Chain A, Solution Structure Of Zf-C2h2 Domains From Human Zinc
Finger Protein 295
Length = 107
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 742 FKCKSCNRGFYSSSEYQAHLRSHRNIRPFTCNYCGRKFIRKFNCIRHVREHELK---KKY 798
++C+ CN S E +H R RN C YC +F +EHE K KK
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCRNAA--VCPYCSLRFFSP----ELKQEHESKCEYKKL 70
Query: 799 SCTICGKTFHRSYYLTAH-VRVHN 821
+C C +TF S+ + H V VHN
Sbjct: 71 TCLECMRTFKSSFSIWRHQVEVHN 94
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 794 LKKKYSCTICGKTFHRSYYLTAHVR-VHNGERPFSCHI 830
+ K Y C CGK F R +L H++ VH ERP C +
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC+ C K F+ + L H HTG P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC+ C K F L+ H+ HTG P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
KK Y C CGK F ++ +L H +H GE+P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGER 824
+K Y C CGK F YL H R+H GE+
Sbjct: 8 EKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY+CD C K+F L H HTG+ P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERPFS 827
+K Y C CGK F + L H+RVH G P S
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREH 792
+P+ C+ CG+ F +K + I H+R H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVH 34
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK ++ + L H +VH GERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC+ C K + + L H+ HTG P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVS 736
KP+ C C K + +K+NL +HQ H
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTG 37
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K + C CGK F ++ +L +H RVH GE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KP++C+ C K F L H+ HTG P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
++ Y C+ CGK F + L+ H R+H GE+P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 560 YKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
Y+C C K+F+ LS H+ H G P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVS 736
KP+ C C+K+F TK NL +HQ TH
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNA 586
KPY+C+ C K+F T L H+ THTG +
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGES 39
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C+ CGK+F + L H R+H GE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY+C C KSF+ +L H+ HTG P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KP+KC+ C K F +L H+ HTG P
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K + C CGK F ++ L +H RVH GE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 821 NGERPFSCHICGKTSTTKSNHNKHVKTH 848
+G+RPF C IC TTK+N +H+K H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREH 792
RPF C C F K NC RH++ H
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVH 30
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
++ Y CT+CGK F L H ++H GE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
+PY C VC K+F L H+ HTG P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 823 ERPFSCHICGKTSTTKSNHNKHVKTH 848
ERP+ C +CGK T +SN KH K H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVS 736
+P+ CTVC K+F + NL HQ H
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKK 796
RP+ C CG+ F + N I+H + H +K
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC+ C K F L++H+ HTG P
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F ++ +L H R+H G +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F R+ +L H +H GE+P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC C K F L+ H+ HTG P
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 557 IKPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
+KPY C+ C K+F L+ H+ HTG P
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
K Y C CGK F LT H +H GE+P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 16/32 (50%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMP 741
KPF CT C KSF K NL HQ H P
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGP 42
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGER 824
+K + CT CGK+F L H R+H GE+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAPFP 589
KP++C C KSF L H+ HTG P
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGP 42
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKK 796
+PF C +CG+ F K N + H R H +K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY C++C F Q L H HTG+ P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERPFS 827
+K Y C ICG F L +H+R+H G P S
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC+ C K+F L+ H+ HTG P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F LT H +H GE+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY+C+ C K+F L+ H+ HTG P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F LT H +H G++P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC+ C K F L H+ HTG P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F ++ +L H +H GE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC+ C FV L H HTG+ P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERPFS 827
+K Y C CG F + +L AHV +H G P S
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY+C C KSF L+ H+ HTG+ P
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERPFS 827
+K Y C CGK+F + L H R+H G P S
Sbjct: 8 EKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERPFS 827
++ Y C CGK+F + LT H R+H G P S
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 560 YKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
Y+C C KSF L+ H+ HTG+ P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTG 584
KPY+C C K+F+ L+ HK HTG
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGER 824
KK Y C C KTF + +L H RVH GER
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F + T H R+H G+RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPYKC C K+F + H+ HTG P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY C+ C K+F +L HK HTG P
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K YSC CGK F L H VH G +P
Sbjct: 8 EKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
K Y C+ CGK+F SY LT H H E+P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY+C C KSF + +L+ H THT P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 552 RTHLKIKPYKCDVCDKSFVTAQKLSDH-KNTHTGN-APFPCNMCDRHFKRYSNLA 604
RTH KPY+C +C F + + H HT N A F C CD R S+L
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 704 RIHDNAKPFSCTVCKKSFYTKWNLGLHQWTHVSRMHMPFKCKSCNRGFYSSSEYQAHLR 762
R H KP+ C +C F + +H + F C C+ S+ HLR
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 789 VREHELKKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+EH K C CGKTF S +L+ H +H GE P
Sbjct: 8 TKEHPFK----CNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 556 KIKPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
K P+KC+ C K+F + LS H+ H G P
Sbjct: 9 KEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHV 735
KPF C+ C+K+F +K L +HQ TH
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHA 34
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 531 PLPCPVCSKTFPSKPSLTLHMRTHLKIKP 559
P C C K F SK L +H +TH + KP
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 556 KIKPYKCDVCDKSFVTAQKLSDHKNTHTG 584
K KPYKC C K+F T L+ H+ HTG
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVS 736
KP+ C C K+F T+ NL HQ H
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTG 37
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGE 823
+K Y C+ CGK F R+ L H R H+GE
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNA 586
KPY+C C K+F+ +L H+ TH+G +
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREH 792
+P+ C+ CG+ FIR I H R H
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTH 35
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 794 LKKKYSCTICGKTFHRSYYLTAHVRVHNGER 824
++K Y C CGK ++R L H RVH GE+
Sbjct: 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGE 823
+K Y CT CGK F R + H R+H GE
Sbjct: 8 EKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREH 792
+P+ C CG+ FIRK + I H R H
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIH 33
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 798 YSCTICGKTFHRSYYLTAHVRVHNGE 823
Y C+ CGK F+R L +H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGE 36
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 559 PYKCDVCDKSFVTAQKLSDHKNTHTG 584
PY+C C K+F +L H+ TH G
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAG 35
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K + C CGK F L H R+H GE+P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTG 584
KPYKC C KSF +L H+ HTG
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTG 37
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 32.7 bits (73), Expect = 0.82, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVHNGER 824
K C +CGK F ++ L AHVR H GE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGE 823
+K Y C CGK F +S L+ H RVH GE
Sbjct: 8 EKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNA 586
KPY C C K+F + LS H+ HTG +
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGES 37
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 529 VHPLPCPVCSKTFPSKPSLTLHMRTHLKIKP 559
V P C C+KTF K L +H R+H +KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 557 IKPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
+KPY C C K+F +L H+ +HTG P
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
K Y C+ C KTF L H R H G +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
+PY+C C K+F T L H+ +HTG P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
++ Y C CGK F L H R H GE+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K + C CGK F R L H ++H GE+P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KP+KC C K F L+ H HTG P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNG 822
+K YSC +CG F R ++ HVR H+G
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 821 NGERPFSCHICGKTSTTKSNHNKHVKTH 848
+GE+P+SC +CG K + HV++H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KPY+C C K+F L H+ HTG P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K Y C CGK F L H ++H GE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2ELU|A Chain A, Solution Structure Of The 5th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 37
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 642 ATVPKQCTYCTEKFTHTSSLTRHIRKNHDPR 672
+ + + C +C +K++ +L +HIR HDP+
Sbjct: 6 SGIKQHCRFCKKKYSDVKNLIKHIRDAHDPQ 36
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 795 KKKYSCTI--CGKTFHRSYYLTAHVRVHNGER 824
KK++ C I CGK + ++ +L AH+R H GER
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVHNGE 823
K Y C CGK F YL H R H GE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 557 IKPYKCDVCDKSFVTAQKLSDHKNTHTGNA 586
+KPY C+ C K+F + L H THTG +
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGES 39
>pdb|2ELW|A Chain A, Solution Structure Of The 5th C2h2 Zinc Finger Of Mouse
Zinc Finger Protein 406
Length = 37
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 642 ATVPKQCTYCTEKFTHTSSLTRHIRKNHDPR 672
+ + + C +C +K++ +L +HIR HDP+
Sbjct: 6 SGIKQHCRFCKKKYSDVKNLIKHIRDMHDPQ 36
>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol
Dehydrogenase-Like Protein Yahk
Length = 369
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 486 SFGTQIQEFLPPSLTSIKNKQRRCDTCSEVFDKLKDYQEHIKNVHPLPCP 535
+ G Q++++ P L + C C E D L++Y +H+ + P P
Sbjct: 90 AVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTP 139
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTG 584
KPYKC C K+F L H+ +HTG
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSRMH 739
KP+ C+ C K+F K L +HQ +H H
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERH 40
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGER 824
+K Y C+ CGK F R L H + H GER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 557 IKPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
+ PYKC C+KSF +L H+ HT P
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 529 VHPLPCPVCSKTFPSKPSLTLHMRTHLKIKP 559
V+P C C K+F K L +H R H + KP
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGER 824
+K Y C CGK + R L H RVH GE+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 557 IKPYKCDVCDKSFVTAQKLSDHKNTHTG 584
++PY C VC K F ++ H HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 798 YSCTICGKTFHRSYYLTAHVRVHNG 822
YSC++CGK F + + H RVH G
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNA 586
KPY+C C K+F +L H+ THTG +
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGE 823
+K Y CT CGK F L H R H GE
Sbjct: 8 EKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSR 737
KP+ CT C K+F K L +HQ TH
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 767 IRPFTCNYCGRKFIRKFNCIRHVREHELKK 796
++P+ C+YCGR F + +RH+ H+ K
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
+K + C CGK+F + L H R+H GE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
KP++C C KSF +L H+ HTG P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 813 LTAHVRVHNGERPFSCHICGKTSTTKSNHNKHVKTHHARETINTEG 858
L H R+H +RPF C+ C + SN +KH+K H + + G
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSSG 70
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREHELKK 796
RPF CN CG+ F R+ + H+R H +K
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 741 PFKCKSCNRGFYSSSEYQAHLRSH 764
PFKC C +GF S HLR H
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLH 35
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGER 824
++ + C CGK F R +L H+R+H+ E+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 775 CGRKFIRKFNCIRHVR-EHELKKKYSCT--ICGKTFHRSYYLTAHVRVHNGERPFSCHIC 831
CGR F + H + +H +K +SC CGK+F+ +L H+++H+ R + C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 832 GKTS 835
G +S
Sbjct: 75 GPSS 78
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 509 CD--TCSEVFDKLKDYQEHIKNVH------PLPCPVCSKTFPSKPSLTLHMRTHLKIKPY 560
CD C +F + H K H P P C K+F K L HM+ H + Y
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 561 KCDV 564
C+
Sbjct: 70 ICEF 73
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNAP 587
K +KC CD F A L H+N H G P
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 624 CGEIFQSRGKLLWHQETHATVPKQ----CTYCTEKFTHTSSLTRHIRKNH 669
CG + + L WHQ HA C +C ++F S+ H K+H
Sbjct: 13 CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 798 YSCTICGKTFHRSYYLTAHVRVHNGERP 825
+ C+ CGK F L H ++H GERP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
K + C CG+ F +L H R+H GE+P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTG 584
KPY+C+ C K+F+ L H+ TH G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 29.3 bits (64), Expect = 9.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREH 792
+P+ CN CG+ FI K I H R H
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTH 35
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGE 823
+K Y C CGK F L H R+H GE
Sbjct: 8 QKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTGNA 586
KPY C+ C K+F +L H+ HTG +
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGES 37
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 527 KNVHPLPCPVCSKTFPSKPSLTLHMR--THLKIKPYKCDVCDKSFVTAQKLSDH 578
K + CP+C F S SL H+R H K+ C VC K F + DH
Sbjct: 70 KAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV----CPVCKKEFTSTDSALDH 119
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 795 KKKYSCTICGKTFHRSYYLTAHVRVHNGERP 825
++ + C+ CGK F ++ H R+H GE+P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 796 KKYSCTICGKTFHRSYYLTAHVRVHNGER 824
K + C C + F RS +L H R H GE+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 741 PFKCKSCNRGFYSSSEYQAHLRSH 764
PF+CK+C R F S + H R+H
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTH 25
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTG 584
KP++C C + F + L H THTG
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTG 27
>pdb|1WJV|A Chain A, Solution Structure Of The N-Terminal Zinc Finger Domain Of
Mouse Cell Growth Regulating Nucleolar Protein Lyar
Length = 79
Score = 30.0 bits (66), Expect = 6.3, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 770 FTCNYCGRKFIRKFNCIRHVREHELKKKYSCTICGKTFHRSYYLTAHVR 818
FTCN CG ++K +HV + SC CGK F Y +HV+
Sbjct: 11 FTCNACGES-VKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDY-KSHVK 57
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 768 RPFTCNYCGRKFIRKFNCIRHVREH 792
RP+ CN CG+ F R + I H++ H
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 798 YSCTICGKTFHRSYYLTAHVRVH 820
Y+C CGK F R ++LT H ++H
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIH 35
>pdb|3K1Q|A Chain A, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|W Chain W, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1299
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 440 HPELFNEPETIKLLSKTQASTSTVISEPSTSFVSQAVCPIKFENSNSFGT----QIQEFL 495
H F P T L S +T+++ SF+S+ + GT +I +
Sbjct: 787 HQRRFTTPPTFTLFSSEAVPVTTLVAAGYNSFISEQTRNPNLAHLLDLGTGPECRILSLI 846
Query: 496 PPSLTSIKNKQRRCDTCSEVFD 517
PP+L + R C FD
Sbjct: 847 PPTLQVTMSDSRPCAELMASFD 868
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 710 KPFSCTVCKKSFYTKWNLGLHQWTHVSRMH 739
KP CT C K+F K L +HQ THV H
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKH 40
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 552 RTHLKIKPYKCDVCDKSFVTAQKLSDHKNTH 582
R IKP++C CD+SF + L+ H+ H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 558 KPYKCDVCDKSFVTAQKLSDHKNTHTG 584
KPY C C K+F +L H+ HTG
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 798 YSCTICGKTFHRSYYLTAHVRVHNGE 823
Y C CGK F R L +H + H+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQ 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,158,594
Number of Sequences: 62578
Number of extensions: 993400
Number of successful extensions: 3869
Number of sequences better than 100.0: 182
Number of HSP's better than 100.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2282
Number of HSP's gapped (non-prelim): 1371
length of query: 858
length of database: 14,973,337
effective HSP length: 107
effective length of query: 751
effective length of database: 8,277,491
effective search space: 6216395741
effective search space used: 6216395741
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)