Query psy8288
Match_columns 177
No_of_seqs 225 out of 1317
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 23:39:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06529 amidase; Provisional 99.8 1.2E-20 2.5E-25 168.1 12.1 106 71-177 333-467 (482)
2 PRK06102 hypothetical protein; 99.8 1.6E-20 3.5E-25 166.1 11.5 157 16-177 270-438 (452)
3 PRK06169 putative amidase; Pro 99.8 2.6E-20 5.5E-25 165.4 12.2 108 69-177 331-445 (466)
4 PRK07235 amidase; Provisional 99.8 2.2E-20 4.9E-25 167.2 10.7 93 84-177 390-490 (502)
5 PRK07042 amidase; Provisional 99.8 3.9E-20 8.4E-25 164.1 11.9 106 71-177 330-441 (464)
6 PRK06061 amidase; Provisional 99.8 4.1E-20 8.8E-25 164.8 11.6 107 70-177 342-457 (483)
7 PRK05962 amidase; Validated 99.8 6.3E-20 1.4E-24 161.2 11.6 159 16-177 244-410 (424)
8 PRK07056 amidase; Provisional 99.8 6.7E-20 1.5E-24 162.2 11.1 157 16-177 274-440 (454)
9 PLN02722 indole-3-acetamide am 99.8 1.3E-19 2.8E-24 159.2 11.9 107 69-177 300-411 (422)
10 TIGR02713 allophanate_hyd allo 99.8 1.4E-19 3E-24 163.9 11.7 158 17-177 239-400 (561)
11 COG0154 GatA Asp-tRNAAsn/Glu-t 99.8 6E-20 1.3E-24 163.4 9.2 161 15-177 283-456 (475)
12 PRK08186 allophanate hydrolase 99.8 1.4E-19 3.1E-24 165.0 11.4 158 16-177 275-437 (600)
13 PRK06170 amidase; Provisional 99.8 7.1E-20 1.5E-24 163.4 9.3 95 83-177 363-471 (490)
14 PRK07487 amidase; Provisional 99.8 2.9E-19 6.2E-24 158.8 12.0 158 16-177 281-446 (469)
15 PRK08310 amidase; Provisional 99.8 2E-19 4.4E-24 156.7 10.6 106 70-177 273-383 (395)
16 PRK07869 amidase; Provisional 99.8 3E-19 6.4E-24 158.6 10.9 92 86-177 350-451 (468)
17 PRK07486 amidase; Provisional 99.8 2.9E-19 6.4E-24 159.3 10.4 107 70-177 344-460 (484)
18 PRK00012 gatA aspartyl/glutamy 99.8 3.4E-19 7.4E-24 157.8 10.7 91 87-177 357-451 (459)
19 TIGR00132 gatA glutamyl-tRNA(G 99.8 2.9E-19 6.4E-24 158.3 9.9 91 87-177 356-450 (460)
20 PRK07488 indole acetimide hydr 99.8 5.2E-19 1.1E-23 157.2 11.5 94 84-177 348-454 (472)
21 PRK12470 amidase; Provisional 99.8 1.2E-18 2.6E-23 154.6 12.0 108 69-177 325-441 (462)
22 PRK09201 amidase; Provisional 99.8 1.3E-18 2.9E-23 154.4 9.7 107 69-177 329-444 (465)
23 TIGR02715 amido_AtzE amidohydr 99.8 2.3E-18 5E-23 152.4 10.8 106 70-177 323-437 (452)
24 PRK08137 amidase; Provisional 99.8 3.2E-18 6.9E-23 153.1 11.7 93 83-177 376-472 (497)
25 PF01425 Amidase: Amidase; In 99.8 9.5E-20 2.1E-24 157.2 1.0 89 89-177 342-440 (441)
26 PRK07139 amidase; Provisional 99.8 4.2E-18 9.2E-23 150.3 10.2 89 88-177 332-422 (439)
27 PRK06828 amidase; Provisional 99.6 9.4E-15 2E-19 130.7 10.8 78 83-177 390-471 (491)
28 KOG1212|consensus 99.5 1.4E-14 3E-19 129.8 6.5 87 90-176 427-539 (560)
29 PRK06707 amidase; Provisional 99.5 5.5E-13 1.2E-17 120.5 11.4 70 91-177 446-517 (536)
30 PRK11910 amidase; Provisional 99.4 4.8E-12 1E-16 115.5 11.5 70 93-177 523-595 (615)
31 PRK06565 amidase; Validated 99.2 7E-11 1.5E-15 107.1 7.2 89 89-177 442-543 (566)
32 KOG1211|consensus 99.0 3.9E-10 8.5E-15 100.5 6.5 85 91-175 391-482 (506)
No 1
>PRK06529 amidase; Provisional
Probab=99.84 E-value=1.2e-20 Score=168.14 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=87.0
Q ss_pred hhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc------------------
Q psy8288 71 TTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK------------------ 132 (177)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~------------------ 132 (177)
....+.+.+.+ ..++..+|.++++.|.++++++.++|+++|+||+||+|.+||+++.....
T Consensus 333 ~~~~~~~~~~g-~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (482)
T PRK06529 333 ETMTWAIYQSG-QDIPAKRYSQVLQKWDTYSATMASFHETYDLLLTFTTNTPAPKHGQLDPDSKLMANLAQAEIFSSEEQ 411 (482)
T ss_pred CHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEcCCCCCCCCCCCccCcccchhhhccccccccchhh
Confidence 34444444443 46889999999999999999999999999999999999999988641100
Q ss_pred -----------ccccccchhhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288 133 -----------FLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 133 -----------~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l 177 (177)
.....||.+||++|+|++|||+|++.+|||+||||+|++++|+.|
T Consensus 412 ~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~l 467 (482)
T PRK06529 412 QNLVETMFEKSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDLL 467 (482)
T ss_pred hhhhhhhhhhhhhcccccccccccCCCeEEeecCcCCCCCceeEEEecCCCcHHHH
Confidence 011348999999999999999999889999999999999999753
No 2
>PRK06102 hypothetical protein; Provisional
Probab=99.84 E-value=1.6e-20 Score=166.12 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=107.6
Q ss_pred cccHHHHHHhhCcccchhhhHHHHHhhh--h-hhhhccchhHHHHHHHHHh-cCCCCChhhHHHHHHHHhcccCCHHHHH
Q psy8288 16 NFSLDWFRALLAGVFDMELKRLFIYRML--T-LCFQVWSHSVTKEVLKWLM-FSSKFTTTTVLYGVIKKAADCFSQRKID 91 (177)
Q Consensus 16 ~~a~~~~~~~~a~~~d~~~~~~~~~~~~--~-~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 91 (177)
+.+++.++++|+.+.+++++........ . ..+.. . +.....+... ......+.+..+..++.+ ..++..+|.
T Consensus 270 ~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~--~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~ 345 (452)
T PRK06102 270 EAAVERLQAAGALVERQAFPAFQEILDLIARHGWLVT--A-EAFALHQERLDGPDAARMDPRVVKRTRLG-RKITASDYI 345 (452)
T ss_pred HHHHHHHHhCCCEEEecCCccHHHHHHHHHHHHHHHH--H-HHHHHHHHHhhccchhhCCHHHHHHHHhc-cCCCHHHHH
Confidence 4567788888998877666543221110 0 00000 1 1111111111 111123444455555553 578899999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccc--c------cccccccchhhhhcCCCeeeeecCCCCCCCce
Q psy8288 92 TLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIH--Y------KFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPV 163 (177)
Q Consensus 92 ~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~--~------~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPv 163 (177)
++...++++++++.++|+ +|+||+||+|.+||+++... . ......||.+||++|+|++|||+|++.+|||+
T Consensus 346 ~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPv 424 (452)
T PRK06102 346 ALLEARERLIAQVTRELG-GALLATPTVAHVAPPLAPLEADDDLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPV 424 (452)
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCccccccCchhhhhhhhhhhhcCccccccCCCeEEEecCCCCCCCCE
Confidence 999999999999999999 89999999999999886421 0 01113579999999999999999998899999
Q ss_pred eeEEEcCCCCCCCC
Q psy8288 164 GFQVSLALVTSKAV 177 (177)
Q Consensus 164 GvQlvg~~~~D~~l 177 (177)
||||+|++++|+.|
T Consensus 425 GlQivg~~~~D~~l 438 (452)
T PRK06102 425 GLLLSAPAGRDERL 438 (452)
T ss_pred EEEEECCCCCHHHH
Confidence 99999999999753
No 3
>PRK06169 putative amidase; Provisional
Probab=99.83 E-value=2.6e-20 Score=165.37 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=89.9
Q ss_pred ChhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccc--cc-----ccccccchh
Q psy8288 69 TTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIH--YK-----FLNYGYVGL 141 (177)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~--~~-----~~~~~~t~~ 141 (177)
.+.+..+..++.+ ..++..+|.++.+.++++++.+.++|+++|+||+||+|.+||+++... .. .....||.+
T Consensus 331 ~~~~~~~~~~~~g-~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~t~~ 409 (466)
T PRK06169 331 LLDPGLRRIAERG-ATYSASDYLDATAVRAALGARMGAFHERYDLLLTPTLPIPAFEAGHDVPPGSGLTDWTQWTPFTYP 409 (466)
T ss_pred hcCHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCCCccCCCccchhhhhhhhccccc
Confidence 3455555566654 578999999999999999999999999999999999999999886421 00 011358999
Q ss_pred hhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288 142 FNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 142 ~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l 177 (177)
||++|+|++|||+|++.+|||+||||+|++++|+.|
T Consensus 410 ~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~l 445 (466)
T PRK06169 410 FNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLV 445 (466)
T ss_pred ccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHH
Confidence 999999999999999889999999999999999753
No 4
>PRK07235 amidase; Provisional
Probab=99.83 E-value=2.2e-20 Score=167.18 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=80.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc---c----c-cccccchhhhhcCCCeeeeecC
Q psy8288 84 CFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY---K----F-LNYGYVGLFNLLEMPVTNVTVG 155 (177)
Q Consensus 84 ~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~---~----~-~~~~~t~~~Nl~G~PaisvP~g 155 (177)
.++..+|.++++.+++++++++++|+++|+||+||+|.+||+++.... . . ....||.+||++|+|++|||+|
T Consensus 390 ~~~~~~y~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PalsvP~g 469 (502)
T PRK07235 390 RYHGRYYAKARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSVPCG 469 (502)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeeCCCCCCCCCcccccCchHHHHHHHHhhhccCccchhhCCCeEEEECC
Confidence 367789999999999999999999999999999999999998864210 0 0 1234799999999999999999
Q ss_pred CCCCCCceeeEEEcCCCCCCCC
Q psy8288 156 LGSNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 156 ~~~~GLPvGvQlvg~~~~D~~l 177 (177)
+ .+||||||||+|++++|+.|
T Consensus 470 ~-~~GlPvGlQlvg~~~~D~~l 490 (502)
T PRK07235 470 L-VDGLPVGLMLVGRHFDEATI 490 (502)
T ss_pred c-CCCCCeEEEEeCCCCCHHHH
Confidence 9 48999999999999999753
No 5
>PRK07042 amidase; Provisional
Probab=99.83 E-value=3.9e-20 Score=164.14 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=87.3
Q ss_pred hhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccc------ccccccccchhhhh
Q psy8288 71 TTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIH------YKFLNYGYVGLFNL 144 (177)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~------~~~~~~~~t~~~Nl 144 (177)
.+.....++.+ ..++..+|.++...+.++++++.++|+++|+||+||+|.+||+++... .......||.+||+
T Consensus 330 ~~~~~~~~~~g-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~nl 408 (464)
T PRK07042 330 LPYIRRWAEGG-ADLSGVEAVRGFNQTFAMRAAAARLFAEFDYVLSPVAPVPAFPAEWASPTNDPARPFEHIAFTVPWNM 408 (464)
T ss_pred CHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccccccchhhhcccccccceec
Confidence 34444445543 578899999999999999999999999999999999999999886311 01112458999999
Q ss_pred cCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288 145 LEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 145 ~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l 177 (177)
+|+|++|||+|++.+|||+||||+|++++|+.|
T Consensus 409 ~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~l 441 (464)
T PRK07042 409 SEQPAASINCGFTRDGLPIGLQIVGPRFDDLGV 441 (464)
T ss_pred cCCCeEEeecCcCCCCCCeEEEEecCCCcHHHH
Confidence 999999999999889999999999999999753
No 6
>PRK06061 amidase; Provisional
Probab=99.83 E-value=4.1e-20 Score=164.78 Aligned_cols=107 Identities=18% Similarity=0.156 Sum_probs=89.0
Q ss_pred hhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc---c------ccccccch
Q psy8288 70 TTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY---K------FLNYGYVG 140 (177)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~---~------~~~~~~t~ 140 (177)
+.+.++..++.+ ..++..+|.++++.|+++++.+.++|+++|+||+||+|.+||++++... . .....||.
T Consensus 342 ~~~~~~~~~~~g-~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~ 420 (483)
T PRK06061 342 LDPRTVSNARMG-RLLSQAILRLARAAEAAAQRRVGSIFDIVDVVLAPTTAQPPPRVGAFDRLGGWATDRAMIAACPYTW 420 (483)
T ss_pred CCHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccccccchhhhhhhhcccccc
Confidence 445555555553 5688999999999999999999999999999999999999998864210 0 01235899
Q ss_pred hhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288 141 LFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 141 ~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l 177 (177)
+||++|+|++|||+|++.+|||+||||+|++++|+.|
T Consensus 421 ~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~L 457 (483)
T PRK06061 421 PWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLL 457 (483)
T ss_pred cccccCCCeEEEecCcCCCCCCeeeEEECCCCCHHHH
Confidence 9999999999999999889999999999999999753
No 7
>PRK05962 amidase; Validated
Probab=99.82 E-value=6.3e-20 Score=161.18 Aligned_cols=159 Identities=9% Similarity=0.035 Sum_probs=106.2
Q ss_pred cccHHHHHHhhCcccchhhhHHHHHhhhhhhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHHHH
Q psy8288 16 NFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLA 95 (177)
Q Consensus 16 ~~a~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~~ 95 (177)
+.+++.++++|+.+++.+++..................+..+..+.+.......+.+..+..+..+ ..++..+|.+++.
T Consensus 244 ~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~a~~ 322 (424)
T PRK05962 244 EASLAALEKAGARIADLAIDDLIARLAEATRIGSIAGIEASHIHADWLADLDANVDIRVKRPLSRR-IKVPLEAYHRLMR 322 (424)
T ss_pred HHHHHHHHHCCCEEEEeccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhchhhCCHHHHHHHHhc-cCCCHHHHHHHHH
Confidence 456778888898887766654221111000000000011111222222222223444445555543 4788999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc------cc--ccccchhhhhcCCCeeeeecCCCCCCCceeeEE
Q psy8288 96 KKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK------FL--NYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167 (177)
Q Consensus 96 ~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~------~~--~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQl 167 (177)
.|.++++.+.++|+++|+||+||+|.+||+++..... .. ...||.++|++|+|++|||+|. +|+|+||||
T Consensus 323 ~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pa~svP~g~--~glPvGlql 400 (424)
T PRK05962 323 TRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQVANQFDLCSITLPMPG--MALPAGLML 400 (424)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCcCccccCCCeEEEECCC--CCCCEEEEE
Confidence 9999999999999999999999999999988642110 00 1248999999999999999984 599999999
Q ss_pred EcCCCCCCCC
Q psy8288 168 SLALVTSKAV 177 (177)
Q Consensus 168 vg~~~~D~~l 177 (177)
+|++++|+.|
T Consensus 401 vg~~~~D~~l 410 (424)
T PRK05962 401 TARNGSDRRL 410 (424)
T ss_pred ECCCCCHHHH
Confidence 9999999753
No 8
>PRK07056 amidase; Provisional
Probab=99.82 E-value=6.7e-20 Score=162.24 Aligned_cols=157 Identities=15% Similarity=0.090 Sum_probs=107.8
Q ss_pred cccHHHHHHhhCcccchhhhHHHHHhhhh--hhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHH
Q psy8288 16 NFSLDWFRALLAGVFDMELKRLFIYRMLT--LCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTL 93 (177)
Q Consensus 16 ~~a~~~~~~~~a~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a 93 (177)
..+++.++++|+.+++++++......... ......+ .....+.+.......+.+..+..++.+ ..++..+|.++
T Consensus 274 ~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~a 349 (454)
T PRK07056 274 ERALKRLSAAGAIIEEIAFPELAELAEINAKGGFSAAE---SYAWHRPLLARHRDQYDPRVAARILRG-EPMSAADYIDL 349 (454)
T ss_pred HHHHHHHHHCCCEEEEecCcchHHHHHHHHhhhHHHHH---HHHHHHHHHhhhhhhCCHHHHHHHHcC-CCCCHHHHHHH
Confidence 44677888889888776665422111110 0011111 111122222222223445555555554 57889999999
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc---cc-----cccccchhhhhcCCCeeeeecCCCCCCCceee
Q psy8288 94 LAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY---KF-----LNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGF 165 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~---~~-----~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGv 165 (177)
+..|.++++++.++|+++|+||+||+|.+||+++.... .. ....||.+||++|+|++|||+|. .+|+|+||
T Consensus 350 ~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~-~~glPvGl 428 (454)
T PRK07056 350 LAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEADDAAFFRTNALLLRNPSLINFLDGCALSLPCHA-PGEAPVGL 428 (454)
T ss_pred HHHHHHHHHHHHHHHccCCEEEECCCCCCCCCcccccccchhhHHHHHHHhhcCccchhcCCCEEEEeCCC-CCCCCEEE
Confidence 99999999999999999999999999999998865210 00 11247899999999999999996 67999999
Q ss_pred EEEcCCCCCCCC
Q psy8288 166 QVSLALVTSKAV 177 (177)
Q Consensus 166 Qlvg~~~~D~~l 177 (177)
||+|++++|+.|
T Consensus 429 qivg~~~~D~~l 440 (454)
T PRK07056 429 MLAGAPGRDDRL 440 (454)
T ss_pred EEECCCCCHHHH
Confidence 999999999753
No 9
>PLN02722 indole-3-acetamide amidohydrolase
Probab=99.81 E-value=1.3e-19 Score=159.24 Aligned_cols=107 Identities=17% Similarity=0.186 Sum_probs=89.9
Q ss_pred ChhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc--c---cccccchhhh
Q psy8288 69 TTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK--F---LNYGYVGLFN 143 (177)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~--~---~~~~~t~~~N 143 (177)
.+.+..+..++.+ ..++..+|.++++.|.++++++.++|+++|+||+||+|.+||+++..... . ....+|.++|
T Consensus 300 ~~~~~v~~~~~~g-~~~s~~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~n 378 (422)
T PLN02722 300 EFGPGISERIWEA-VRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAG 378 (422)
T ss_pred hCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhccc
Confidence 4566666677764 57899999999999999999999999999999999999999988642110 0 1235789999
Q ss_pred hcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288 144 LLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 144 l~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l 177 (177)
++|+|++|||+|.+ +|||+||||+|++++|+.|
T Consensus 379 l~G~PaisvP~g~~-~glPvGlqivg~~~~D~~l 411 (422)
T PLN02722 379 VSGFCQVSIPLGLH-DNLPVSVSLLAKHGSDGFL 411 (422)
T ss_pred ccCCCEEEEeCCCC-CCCCEEEEEECCCCChHHH
Confidence 99999999999985 7999999999999999753
No 10
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=99.81 E-value=1.4e-19 Score=163.88 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=109.6
Q ss_pred ccHHHHHHhhCcccchhhhHHHHHhhhhhhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHHHHH
Q psy8288 17 FSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAK 96 (177)
Q Consensus 17 ~a~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~~~ 96 (177)
.+++.++++|+.+++++++.........+.. .+ ..+..+.++......+..+.+.++.+++.+ ..++..+|.+++++
T Consensus 239 ~a~~~L~~~G~~v~~v~~~~~~~~~~~l~~~-~~-~~e~~~~~~~~~~~~~~~~~p~~~~~l~~g-~~~sa~~~~~a~~~ 315 (561)
T TIGR02713 239 AAVERLEALGVEVVEIDFAPFLETAALLYEG-PW-VAERYAAVGEFVEAQPDALDPVVRGIITSA-TRFSAADAFAAQYR 315 (561)
T ss_pred HHHHHHHHCCCEEEEecchhHHHHHHHHHHH-HH-HHHHHHHHHHHHhhChhhcCHHHHHHHHhc-cCCCHHHHHHHHHH
Confidence 4667788889988776665432221111100 00 011122222222222334556666666664 57899999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc----cccccccchhhhhcCCCeeeeecCCCCCCCceeeEEEcCCC
Q psy8288 97 KKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY----KFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALV 172 (177)
Q Consensus 97 ~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~----~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~ 172 (177)
++++++++.++|+++|+||+||+|.+++..+.... ......||.++|++|+|+++||+|+..+|||+||||+|+++
T Consensus 316 r~~l~~~~~~~~~~~DvLl~Pt~p~~~~~~~~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~ 395 (561)
T TIGR02713 316 LAALRRKAEALLAGVDVLLVPTAPTHPTIEEVLADPVGLNSRLGTYTNFVNLLDLCAVAVPAGFRSDGLPFGVTLIGPAF 395 (561)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCCCCCCCchhccCCchhhhhhhhcccccccccCCceEEeecccCCCCCCEEEEEEcCCC
Confidence 99999999999999999999999998753321100 01113589999999999999999998899999999999999
Q ss_pred CCCCC
Q psy8288 173 TSKAV 177 (177)
Q Consensus 173 ~D~~l 177 (177)
+|+.|
T Consensus 396 ~D~~L 400 (561)
T TIGR02713 396 HDAAL 400 (561)
T ss_pred ChHHH
Confidence 99753
No 11
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=6e-20 Score=163.40 Aligned_cols=161 Identities=15% Similarity=0.102 Sum_probs=108.3
Q ss_pred ecccHHHHHHhhCcccchhhhHHHH-HhhhhhhhhccchhHHHHHHHH--HhcCCCCChhhHHHHHHHHhcccCCHHHHH
Q psy8288 15 LNFSLDWFRALLAGVFDMELKRLFI-YRMLTLCFQVWSHSVTKEVLKW--LMFSSKFTTTTVLYGVIKKAADCFSQRKID 91 (177)
Q Consensus 15 ~~~a~~~~~~~~a~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 91 (177)
+..++++++++|+.+++++++.+.. +....+ ............... ........+.+.....+..+ ..++..+|.
T Consensus 283 ~~~a~~~l~~~Ga~v~~v~lp~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ri~~G-~~~~~~~~~ 360 (475)
T COG0154 283 FEAAVKALEAAGAEVVEVSLPLLSDDYALAAY-YLARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLG-TYLLSAGYY 360 (475)
T ss_pred HHHHHHHHHHCCCEEEeccCCchhhhhhhhHH-HHHHhhhhhhhhcchhhhhhhhhhcccHHHHHHHhcc-ccccchHHH
Confidence 4568899999999999888884443 221111 000000000000000 00000112333333344442 467788898
Q ss_pred HHHHHHHHH---HHHHHHHhcCCCEEEcCCCCcCcccccc-cc---c---cccccccchhhhhcCCCeeeeecCCCCCCC
Q psy8288 92 TLLAKKKDL---MKKFRDMLGDNGVFLFPTFINSAHYHYQ-IH---Y---KFLNYGYVGLFNLLEMPVTNVTVGLGSNKL 161 (177)
Q Consensus 92 ~a~~~~~~~---~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~-~~---~---~~~~~~~t~~~Nl~G~PaisvP~g~~~~GL 161 (177)
.+...+.+. ++++.++|+++|+||+||+|.+||++++ .. . ......||.++|++|+|++|||+|++.+||
T Consensus 361 ~a~~~~~~~~~i~~~~~~~f~~~D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~Gl 440 (475)
T COG0154 361 DAYYRRAQKTLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGL 440 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCEEEeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCC
Confidence 888888555 9999999999999999999999999986 11 1 111246799999999999999999988899
Q ss_pred ceeeEEEcCCCCCCCC
Q psy8288 162 PVGFQVSLALVTSKAV 177 (177)
Q Consensus 162 PvGvQlvg~~~~D~~l 177 (177)
|+||||+|++|+|..|
T Consensus 441 PvGlqlig~~~~d~~L 456 (475)
T COG0154 441 PVGLQLIGPAFDDATL 456 (475)
T ss_pred CeeEEEecCCCCHHHH
Confidence 9999999999999754
No 12
>PRK08186 allophanate hydrolase; Provisional
Probab=99.81 E-value=1.4e-19 Score=164.97 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=109.9
Q ss_pred cccHHHHHHhhCcccchhhhHHHHHhhhhhhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHHHH
Q psy8288 16 NFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLA 95 (177)
Q Consensus 16 ~~a~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~~ 95 (177)
+.+++.++++|+.+++++++.........+.. .+. .+....++.+.......+.+..+.+++.+ ..++..+|.+++.
T Consensus 275 ~~a~~~L~~~G~~v~ei~~~~~~~~~~~~~~~-~~~-ae~~~~~~~~~~~~~~~~~p~~~~~i~~g-~~~sa~~~~~a~~ 351 (600)
T PRK08186 275 AAALARLEALGAELVEIDFSPFLEAARLLYEG-PWV-AERYAAVGEFLEAHPDAVDPVVRGIIAGA-AAFSAADAFRALY 351 (600)
T ss_pred HHHHHHHHHcCCeEEEecchhHHHHHHHHHHH-HHH-HHHHHHHHHHHhhChhhcCHHHHHHHHhC-cCCCHHHHHHHHH
Confidence 35667789999988877666443221111100 001 11122222222222234455666666654 5789999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc-----cccccccchhhhhcCCCeeeeecCCCCCCCceeeEEEcC
Q psy8288 96 KKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY-----KFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLA 170 (177)
Q Consensus 96 ~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~-----~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~ 170 (177)
+++++++++.++|+++|+||+||+|.+++ +.+... ......||.++|++|+|+++||+|+..+|||+||||+|+
T Consensus 352 ~r~~l~~~~~~~~~~~D~Ll~Pt~p~~~~-~~~~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~ 430 (600)
T PRK08186 352 RLAELRRAAEAVLAGIDALLVPTAPTHPT-IAEVAADPIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAP 430 (600)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCCC-chhhcCCchhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcC
Confidence 99999999999999999999999999875 322110 111124899999999999999999989999999999999
Q ss_pred CCCCCCC
Q psy8288 171 LVTSKAV 177 (177)
Q Consensus 171 ~~~D~~l 177 (177)
+++|+.|
T Consensus 431 ~~~D~~L 437 (600)
T PRK08186 431 AFADQAL 437 (600)
T ss_pred CCCHHHH
Confidence 9999753
No 13
>PRK06170 amidase; Provisional
Probab=99.81 E-value=7.1e-20 Score=163.37 Aligned_cols=95 Identities=23% Similarity=0.329 Sum_probs=82.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc---------c-----ccccccchhhhhcCCC
Q psy8288 83 DCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY---------K-----FLNYGYVGLFNLLEMP 148 (177)
Q Consensus 83 ~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~---------~-----~~~~~~t~~~Nl~G~P 148 (177)
..++..+|.++...|.++++++.++|+++|+||+||+|.+||+++.... . ...+.||.+||++|+|
T Consensus 363 ~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~P 442 (490)
T PRK06170 363 AVLSHRDWLFADAAREELRAAWRRFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYWDQLVWAGLATLPGLP 442 (490)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchhhhhhhcceecccCCC
Confidence 4678999999999999999999999999999999999999998864210 0 0113578899999999
Q ss_pred eeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288 149 VTNVTVGLGSNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 149 aisvP~g~~~~GLPvGvQlvg~~~~D~~l 177 (177)
++|||+|++.+|||+||||+|++++|+.|
T Consensus 443 aisvP~g~~~~GlPvGlQlig~~~~D~~L 471 (490)
T PRK06170 443 ATAIPIGLSATGLPVGVQIVGPALEDRTP 471 (490)
T ss_pred eEEEECCcCCCCCceeEEEecCCCCHHHH
Confidence 99999999889999999999999999754
No 14
>PRK07487 amidase; Provisional
Probab=99.80 E-value=2.9e-19 Score=158.80 Aligned_cols=158 Identities=14% Similarity=0.029 Sum_probs=103.6
Q ss_pred cccHHHHHHhhCcccch-hhhHHHHHhhhhhhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHHH
Q psy8288 16 NFSLDWFRALLAGVFDM-ELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLL 94 (177)
Q Consensus 16 ~~a~~~~~~~~a~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~ 94 (177)
..+++.++++|+.++++ +++.........+.... .+....+.+.........+........+.+ ..++..+|.+++
T Consensus 281 ~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~ 357 (469)
T PRK07487 281 RDAARRLEDAGWTVEEVDDTPPLREAAELQERLWL--GDGYEALLAAAEAEGDPGALAALRGQRAKA-RPLDLAGYMNAL 357 (469)
T ss_pred HHHHHHHHHCCCEEEecCCCCchHHHHHHHHHHHH--HHHHHHHHHHHHhhchhhhhHHHHHHHHhc-cCCCHHHHHHHH
Confidence 34667788889887665 55543221111110111 111111111111111112333343444443 468899999999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc--c-----cccccchhhhhcCCCeeeeecCCCCCCCceeeEE
Q psy8288 95 AKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK--F-----LNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167 (177)
Q Consensus 95 ~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~--~-----~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQl 167 (177)
+.++++++++.++|+++|+||+||+|.+||+++..... . ....+|.++|++|+|++|||+|++ +|||+||||
T Consensus 358 ~~r~~~~~~~~~~~~~~D~ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlQl 436 (469)
T PRK07487 358 ARRATLTRQWQLFFEDYPLLLMPVSAELPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLV-GGVPVGVQL 436 (469)
T ss_pred HHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccC-CCcceeEEE
Confidence 99999999999999999999999999999988642110 0 011246789999999999999985 699999999
Q ss_pred EcCCCCCCCC
Q psy8288 168 SLALVTSKAV 177 (177)
Q Consensus 168 vg~~~~D~~l 177 (177)
+|++++|+.|
T Consensus 437 vg~~~~D~~l 446 (469)
T PRK07487 437 VAGRFREDLC 446 (469)
T ss_pred eCCCCCHHHH
Confidence 9999999753
No 15
>PRK08310 amidase; Provisional
Probab=99.80 E-value=2e-19 Score=156.66 Aligned_cols=106 Identities=11% Similarity=0.179 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc-----ccccccchhhhh
Q psy8288 70 TTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK-----FLNYGYVGLFNL 144 (177)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~-----~~~~~~t~~~Nl 144 (177)
+.+..+..++.+ ..++..+|.++.+.|+++++++.++|+++|+||+||++.+||+++..... .....||.++|+
T Consensus 273 ~~~~~~~~~~~g-~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~ 351 (395)
T PRK08310 273 LGPGVADRFAAG-AEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGL 351 (395)
T ss_pred cCHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehh
Confidence 444455555553 57889999999999999999999999999999999999999988642110 112357999999
Q ss_pred cCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288 145 LEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 145 ~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l 177 (177)
+|+|+++||+|. .+|||+||||+|++++|+.|
T Consensus 352 ~G~PaisvP~g~-~~glPvglQivg~~~~D~~l 383 (395)
T PRK08310 352 AGLPQISLPLAS-VDGAPFGLSLIGPRGSDRSL 383 (395)
T ss_pred cCCCeEEEECCC-CCCCCEEEEEECCCCCHHHH
Confidence 999999999996 68999999999999999753
No 16
>PRK07869 amidase; Provisional
Probab=99.80 E-value=3e-19 Score=158.60 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc----------ccccccchhhhhcCCCeeeeecC
Q psy8288 86 SQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK----------FLNYGYVGLFNLLEMPVTNVTVG 155 (177)
Q Consensus 86 ~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~----------~~~~~~t~~~Nl~G~PaisvP~g 155 (177)
+..+|.++++.++++++.+.++|+++|+||+||+|.+||+++..... .....||.++|++|+|++|||+|
T Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g 429 (468)
T PRK07869 350 NLHRLPLAIARLRRLRRVYARFFGTYDVVLTPTLAHTTPEIGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLG 429 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCCCCCCCccCccccchhhhHHHhcccccCccccccCCCceeeecC
Confidence 34568888889999999999999999999999999999988642100 01235799999999999999999
Q ss_pred CCCCCCceeeEEEcCCCCCCCC
Q psy8288 156 LGSNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 156 ~~~~GLPvGvQlvg~~~~D~~l 177 (177)
++.+|||+||||+|++++|+.|
T Consensus 430 ~~~~GlPvGlQivg~~~~D~~l 451 (468)
T PRK07869 430 QSSDGLPVGMMFSADVGDEATL 451 (468)
T ss_pred cCCCCCCeeEEEecCCCchHHH
Confidence 9889999999999999999753
No 17
>PRK07486 amidase; Provisional
Probab=99.79 E-value=2.9e-19 Score=159.25 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccc-----c----c-ccccccc
Q psy8288 70 TTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIH-----Y----K-FLNYGYV 139 (177)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~-----~----~-~~~~~~t 139 (177)
+.+..+..++.+ ..++..+|.+++..|.++++++.++|+++|+||+||+|.+||+++... . . .....+|
T Consensus 344 ~~~~~~~~~~~g-~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 422 (484)
T PRK07486 344 LKPEAIWEIEGG-LALTAAQVYEASVIRSAWYQALLRLFERYDFLALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVV 422 (484)
T ss_pred cCHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCccccccccccccchhhhhhhhhccc
Confidence 344444455553 578999999999999999999999999999999999999998775310 0 0 0112367
Q ss_pred hhhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288 140 GLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 140 ~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l 177 (177)
.+||++|+|++|||+|++.+|||+||||+|++++|+.|
T Consensus 423 ~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D~~l 460 (484)
T PRK07486 423 VPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAV 460 (484)
T ss_pred ccccccCCCeEEEECCcCCCCCceEEEEECCCCCHHHH
Confidence 79999999999999999889999999999999999753
No 18
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=99.79 E-value=3.4e-19 Score=157.81 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc----cccccccchhhhhcCCCeeeeecCCCCCCCc
Q psy8288 87 QRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY----KFLNYGYVGLFNLLEMPVTNVTVGLGSNKLP 162 (177)
Q Consensus 87 ~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~----~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLP 162 (177)
...|.++.+.+.++++++.++|+++|+||+||+|.+||+++.... ......||.++|++|+|++|||+|++.+|||
T Consensus 357 ~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~n~~G~PaisvP~g~~~~glP 436 (459)
T PRK00012 357 DAYYLKAQKVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLAMYLSDIFTVPANLAGLPAISVPAGFDDGGLP 436 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCcccccccCchHhhhccccccccccccCCCcEEEecCCCCCCCC
Confidence 355888999999999999999999999999999999999864211 1112348999999999999999999888999
Q ss_pred eeeEEEcCCCCCCCC
Q psy8288 163 VGFQVSLALVTSKAV 177 (177)
Q Consensus 163 vGvQlvg~~~~D~~l 177 (177)
+||||+|++++|+.|
T Consensus 437 vGlqlvg~~~~D~~L 451 (459)
T PRK00012 437 VGLQLIGKYFDEETL 451 (459)
T ss_pred EEEEEECCCCchHHH
Confidence 999999999999754
No 19
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=99.79 E-value=2.9e-19 Score=158.27 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc----cccccccchhhhhcCCCeeeeecCCCCCCCc
Q psy8288 87 QRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY----KFLNYGYVGLFNLLEMPVTNVTVGLGSNKLP 162 (177)
Q Consensus 87 ~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~----~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLP 162 (177)
..+|.+++..|.++++.+.++|+++|+||+||++.+||+++.... ......||.+||++|+|++|||+|++.+|||
T Consensus 356 ~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~GlP 435 (460)
T TIGR00132 356 DKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLP 435 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCchHhhhcccceeccccccCCCcEEEecCcCCCCCC
Confidence 345889999999999999999999999999999999998864211 1111247999999999999999999889999
Q ss_pred eeeEEEcCCCCCCCC
Q psy8288 163 VGFQVSLALVTSKAV 177 (177)
Q Consensus 163 vGvQlvg~~~~D~~l 177 (177)
+||||+|++++|+.|
T Consensus 436 vGlqlig~~~~D~~l 450 (460)
T TIGR00132 436 IGLQIIGKCFDDKTL 450 (460)
T ss_pred eeEEEECCCCchHHH
Confidence 999999999999754
No 20
>PRK07488 indole acetimide hydrolase; Validated
Probab=99.79 E-value=5.2e-19 Score=157.22 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=79.9
Q ss_pred cCCHHHHHHHHHH-HHHHHHHHHHHhc--CCCEEEcCCCCcCccccccccc---------c-ccccccchhhhhcCCCee
Q psy8288 84 CFSQRKIDTLLAK-KKDLMKKFRDMLG--DNGVFLFPTFINSAHYHYQIHY---------K-FLNYGYVGLFNLLEMPVT 150 (177)
Q Consensus 84 ~~~~~~y~~a~~~-~~~~~~~~~~~~~--~~Dvll~Pt~~~~Ap~~~~~~~---------~-~~~~~~t~~~Nl~G~Pai 150 (177)
.++..+|.++++. |.++++.+.++|+ ++|+||+||+|.+||+++.... . .....||.++|++|+|++
T Consensus 348 ~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pai 427 (472)
T PRK07488 348 QISEDAYRAALDVGRPRLQAWYRQAFARHGLDAILFPTTPLTAPPIGDDDTVILNGAAVPTFARVIRNTDPASNAGLPGL 427 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEeCCCCCCCccccccccccccccchhhhhhhhcccccccccCCCeE
Confidence 5788899999888 9999999999998 6899999999999998864210 0 011347889999999999
Q ss_pred eeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288 151 NVTVGLGSNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 151 svP~g~~~~GLPvGvQlvg~~~~D~~l 177 (177)
|||+|++.+|||+||||+|++++|+.|
T Consensus 428 svP~g~~~~glPvGlqlig~~~~d~~L 454 (472)
T PRK07488 428 SLPAGLTPHGLPVGLELDGPAGSDRRL 454 (472)
T ss_pred EEecCCCCCCCCeeEEEeCCCCCHHHH
Confidence 999999889999999999999999753
No 21
>PRK12470 amidase; Provisional
Probab=99.78 E-value=1.2e-18 Score=154.63 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=85.1
Q ss_pred ChhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc---------ccccccc
Q psy8288 69 TTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK---------FLNYGYV 139 (177)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~---------~~~~~~t 139 (177)
.+.+..+..++.+ ..++..+|..+..++.++++.+.++|+++|+||+||+|.+||+++..... .....||
T Consensus 325 ~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t 403 (462)
T PRK12470 325 RLEARTRAIARLG-SFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIGAYQRRGAVSTLLLVVQRVPYF 403 (462)
T ss_pred hcCHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCCCCCCCCCCccCCCcchhhhhhhhhccCcC
Confidence 3445555555654 46777888755555669999999999999999999999999988642110 0123478
Q ss_pred hhhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288 140 GLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 140 ~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l 177 (177)
.++|++|+|++|||+|++.+|||+||||+|++++|+.|
T Consensus 404 ~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~~L 441 (462)
T PRK12470 404 QVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATL 441 (462)
T ss_pred ccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHHHH
Confidence 99999999999999999889999999999999999753
No 22
>PRK09201 amidase; Provisional
Probab=99.77 E-value=1.3e-18 Score=154.41 Aligned_cols=107 Identities=12% Similarity=0.034 Sum_probs=87.7
Q ss_pred ChhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccc---c------cccccccc
Q psy8288 69 TTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIH---Y------KFLNYGYV 139 (177)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~---~------~~~~~~~t 139 (177)
.+.+..+..++.+ ..++..+|.++++.|+++++.+.++|+++|+||+||+|.+||+++... . ......||
T Consensus 329 ~~~~~~~~~~~~g-~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t 407 (465)
T PRK09201 329 DFDPASRDRLLAG-AMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSAPLIGQETMRIDGVELPVRANLGILT 407 (465)
T ss_pred hcCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccccCcchhhhhhhHHHhC
Confidence 3445555555554 468999999999999999999999999999999999999999886421 0 01113489
Q ss_pred hhhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288 140 GLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 140 ~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l 177 (177)
.+||++|+|++|||+|. .+|||+||||+|++++|+.|
T Consensus 408 ~~~nl~G~PaisvP~g~-~~GlPvGlQivg~~~~D~~l 444 (465)
T PRK09201 408 QPISFIGLPVVAVPLRT-PGGLPIGVQLIAAPWREDLA 444 (465)
T ss_pred ccccccCCCeEEEeCCC-CCCcCeEEEEECCCCCHHHH
Confidence 99999999999999996 57999999999999999754
No 23
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=99.77 E-value=2.3e-18 Score=152.35 Aligned_cols=106 Identities=12% Similarity=0.053 Sum_probs=86.5
Q ss_pred hhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccc---c------cccccccch
Q psy8288 70 TTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIH---Y------KFLNYGYVG 140 (177)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~---~------~~~~~~~t~ 140 (177)
+.+..+..++.+ ..++..+|.++++.|+++++.+.++|+++|+||+||+|.+||+++... . ......||.
T Consensus 323 ~~~~~~~~~~~g-~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~ 401 (452)
T TIGR02715 323 FDPATRDRLLAG-ALLPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQ 401 (452)
T ss_pred cCHHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcCcccccccCccchhhhhhHHhcCc
Confidence 344444455543 468899999999999999999999999999999999999999886421 0 011134899
Q ss_pred hhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288 141 LFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 141 ~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l 177 (177)
+||++|+|++|||+|. .+|||+||||+|++++|+.|
T Consensus 402 ~~nl~G~PaisvP~g~-~~glPvGlQivg~~~~D~~l 437 (452)
T TIGR02715 402 PISFAGLPVLAAPLPR-PGRLPIGVQLIAAPWREDLC 437 (452)
T ss_pred cchhcCCCeEEEeCCC-CCCCCeEEEEECCCCCHHHH
Confidence 9999999999999998 58999999999999999753
No 24
>PRK08137 amidase; Provisional
Probab=99.76 E-value=3.2e-18 Score=153.09 Aligned_cols=93 Identities=18% Similarity=0.084 Sum_probs=75.1
Q ss_pred ccCCHHHHHHHHHHHHHH--HHHHHHHhc--CCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCC
Q psy8288 83 DCFSQRKIDTLLAKKKDL--MKKFRDMLG--DNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGS 158 (177)
Q Consensus 83 ~~~~~~~y~~a~~~~~~~--~~~~~~~~~--~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~ 158 (177)
..++..+|.+++..++++ ++++.++|+ ++|+||+||++ +||+++..........+|.++|++|+|++|||+|+.
T Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~- 453 (497)
T PRK08137 376 PGLDDPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQV- 453 (497)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccccccccccccccHhhCCCeEEEeCCCC-
Confidence 467889999998766655 378999997 68999999999 888886421111223468899999999999999996
Q ss_pred CCCceeeEEEcCCCCCCCC
Q psy8288 159 NKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 159 ~GLPvGvQlvg~~~~D~~l 177 (177)
+|||+||||+|++++|+.|
T Consensus 454 ~GlPvGvQlig~~~~d~~L 472 (497)
T PRK08137 454 QGLPVGLSFIGAAWSEARL 472 (497)
T ss_pred CCcCeEEEEECCCCCHHHH
Confidence 8999999999999999753
No 25
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=99.76 E-value=9.5e-20 Score=157.20 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc----------ccccccchhhhhcCCCeeeeecCCCC
Q psy8288 89 KIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK----------FLNYGYVGLFNLLEMPVTNVTVGLGS 158 (177)
Q Consensus 89 ~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~----------~~~~~~t~~~Nl~G~PaisvP~g~~~ 158 (177)
.|.++...+.++++++.++|+++|+||+||++.+||+++..... .....+|.++|++|+|+++||+|+..
T Consensus 342 ~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~g~PaisvP~g~~~ 421 (441)
T PF01425_consen 342 YYLQAQRRRARLRRRFDELFEEYDALLTPTTPVPAPPIGEPSPLGPDYTALWNLLDFTAYTSPANLAGLPAISVPVGFDP 421 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSEEEEESSSSS-BBTTTTCCCTSCHHHHHHHHTTTTTTHHHHHHTHHEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcceecccCCCcCCCccccccccccchhhhhhhhhhhccccccccccCcceeeecCCCC
Confidence 38999999999999999999999999999999999998764210 11245779999999999999999988
Q ss_pred CCCceeeEEEcCCCCCCCC
Q psy8288 159 NKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 159 ~GLPvGvQlvg~~~~D~~l 177 (177)
+|||+||||+|++|+|+.|
T Consensus 422 ~GlPvGvqlvg~~~~D~~L 440 (441)
T PF01425_consen 422 DGLPVGVQLVGRPGSDEKL 440 (441)
T ss_dssp TTEEEEEEEEESTTBHHHH
T ss_pred CCcCEeEEEECCCCCccCc
Confidence 9999999999999999753
No 26
>PRK07139 amidase; Provisional
Probab=99.75 E-value=4.2e-18 Score=150.30 Aligned_cols=89 Identities=11% Similarity=0.213 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccccc-cccc-cchhhhhcCCCeeeeecCCCCCCCceee
Q psy8288 88 RKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKF-LNYG-YVGLFNLLEMPVTNVTVGLGSNKLPVGF 165 (177)
Q Consensus 88 ~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~~-~~~~-~t~~~Nl~G~PaisvP~g~~~~GLPvGv 165 (177)
.+|.++++.|+++++.+.++|+++|+||+||+|.+||+++...... .... +|.++|++|+|++|||+| ..+|||+||
T Consensus 332 ~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g-~~~glPiGl 410 (439)
T PRK07139 332 KYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYMDYILTISNLVGNPSLSIPLG-KYNNLPFNL 410 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhhhhcccCcccCCCCeEEEeCC-CCCCCCeEE
Confidence 4589999999999999999999999999999999999886421000 0112 367899999999999999 678999999
Q ss_pred EEEcCCCCCCCC
Q psy8288 166 QVSLALVTSKAV 177 (177)
Q Consensus 166 Qlvg~~~~D~~l 177 (177)
||+|++++|+.|
T Consensus 411 qivg~~~~D~~L 422 (439)
T PRK07139 411 AIDSKIYDDEKL 422 (439)
T ss_pred EEECCCCChHHH
Confidence 999999999753
No 27
>PRK06828 amidase; Provisional
Probab=99.58 E-value=9.4e-15 Score=130.73 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=67.1
Q ss_pred ccCCHHHHHHHHHHHHHHH--HHHHHHhcC--CCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCC
Q psy8288 83 DCFSQRKIDTLLAKKKDLM--KKFRDMLGD--NGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGS 158 (177)
Q Consensus 83 ~~~~~~~y~~a~~~~~~~~--~~~~~~~~~--~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~ 158 (177)
..++..+|.++++.+..++ ++++++|++ +|+||+||++.. .+.|++|+|++|||+|++.
T Consensus 390 ~~~~~~~y~~a~~~r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~-----------------~~~~~~GlPaisvP~G~~~ 452 (491)
T PRK06828 390 NTLRNPEYLNARLEDIYFSQEQGIDFALEKYNLDAILFPSYIGS-----------------TICAKAGYPSIAIPAGYME 452 (491)
T ss_pred CCCChHHHHHHHHHHHHhhhHHHHHHHHHhcCCCEEEeCCCCcc-----------------cchhhcCCCeEEeecCCCC
Confidence 4678889999998887754 689999985 899999998754 2357999999999999988
Q ss_pred CCCceeeEEEcCCCCCCCC
Q psy8288 159 NKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 159 ~GLPvGvQlvg~~~~D~~l 177 (177)
+|||+||||+|++|+|..|
T Consensus 453 ~GlPvGlQlig~~~~D~~L 471 (491)
T PRK06828 453 GGRPFGITLASTAFSEGTL 471 (491)
T ss_pred CCcCeEEEEECCCCCHHHH
Confidence 9999999999999999753
No 28
>KOG1212|consensus
Probab=99.52 E-value=1.4e-14 Score=129.82 Aligned_cols=87 Identities=28% Similarity=0.359 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecC--------------
Q psy8288 90 IDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVG-------------- 155 (177)
Q Consensus 90 y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g-------------- 155 (177)
+.....+..+++........+.||||||+++.|||+|+.+.....++.||.+||++|+||.+||++
T Consensus 427 ~~~~~~e~yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~~~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~~~~~~~ 506 (560)
T KOG1212|consen 427 QNYEDIESYRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLLLVNGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEEYPM 506 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchhhccchhHHHHHHhccCCcccccccccchhhhccccccc
Confidence 333444444445555556678999999999999999998766667889999999999997777764
Q ss_pred ------------CCCCCCceeeEEEcCCCCCCC
Q psy8288 156 ------------LGSNKLPVGFQVSLALVTSKA 176 (177)
Q Consensus 156 ------------~~~~GLPvGvQlvg~~~~D~~ 176 (177)
.+..|||+|||+||.+++|+.
T Consensus 507 ~D~~~~~~~~g~~~s~GlPigVQVVa~p~~del 539 (560)
T KOG1212|consen 507 NDKWATKVPKGSLDSRGLPIGVQVVANPNQDEL 539 (560)
T ss_pred ccHHHHhCcccccCCCCCceeEEEecCCCchHH
Confidence 445799999999999999985
No 29
>PRK06707 amidase; Provisional
Probab=99.45 E-value=5.5e-13 Score=120.47 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCCCCCceeeEEE
Q psy8288 91 DTLLAKKKDLMKKFRDMLG--DNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVS 168 (177)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~--~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQlv 168 (177)
..+...+..+++.++++|+ ++|+||+|.. ..|.++|++|+|++|||+|++.+|+|+|+||+
T Consensus 446 ~~~~~~r~~~~~~~~~~~~~~~~Dall~p~~-----------------~~t~~an~aG~PaitvP~G~~~~GlP~Glqli 508 (536)
T PRK06707 446 KVVQTSQENAKKELDRYLVEKGLDALVMINN-----------------EEVLLSAVAGYPELAVPAGYDNNGEPVGAVFV 508 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEEEecCC-----------------CcchhhHhcCCCeEEEecccCCCCCCeEEEEE
Confidence 3445567778888999998 8999999731 12678999999999999999889999999999
Q ss_pred cCCCCCCCC
Q psy8288 169 LALVTSKAV 177 (177)
Q Consensus 169 g~~~~D~~l 177 (177)
|++|+|..|
T Consensus 509 g~~~~e~~L 517 (536)
T PRK06707 509 GKQFGEKEL 517 (536)
T ss_pred CCCCChHHH
Confidence 999999754
No 30
>PRK11910 amidase; Provisional
Probab=99.37 E-value=4.8e-12 Score=115.49 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHhc--CCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCC-CCCceeeEEEc
Q psy8288 93 LLAKKKDLMKKFRDMLG--DNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGS-NKLPVGFQVSL 169 (177)
Q Consensus 93 a~~~~~~~~~~~~~~~~--~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~-~GLPvGvQlvg 169 (177)
+...++.+++.++++|+ ++|+||+|+... .. ....+++|+|++|||+|++. +|+|+||||+|
T Consensus 523 ~~~~~~~~~~~l~~~~~~~~lDalv~P~~~~-------------~~--~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG 587 (615)
T PRK11910 523 ASNLIQSSQNELDSVLQKDKLDAVVTIGMGG-------------SV--MFLAPIAGNPELTIPAGYDEESNQPISLTFIT 587 (615)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcEEEeCCCCC-------------cc--hhhhhhcCCCeEEecccCCCCCCcCeEEEEEC
Confidence 44556667788999996 799999997311 01 12345999999999999986 79999999999
Q ss_pred CCCCCCCC
Q psy8288 170 ALVTSKAV 177 (177)
Q Consensus 170 ~~~~D~~l 177 (177)
++|+|+.|
T Consensus 588 ~~~sE~~L 595 (615)
T PRK11910 588 ARNSDKIL 595 (615)
T ss_pred CCCCHHHH
Confidence 99999754
No 31
>PRK06565 amidase; Validated
Probab=99.15 E-value=7e-11 Score=107.14 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHhcC--CCEEEcCCCCcCccccccccccc--------cccccchh-hhhcCCCeeeeecCC
Q psy8288 89 KIDTLLAKKKDLMK-KFRDMLGD--NGVFLFPTFINSAHYHYQIHYKF--------LNYGYVGL-FNLLEMPVTNVTVGL 156 (177)
Q Consensus 89 ~y~~a~~~~~~~~~-~~~~~~~~--~Dvll~Pt~~~~Ap~~~~~~~~~--------~~~~~t~~-~Nl~G~PaisvP~g~ 156 (177)
.|.++++.++..++ .++++|.. .|+||+|+.+..+|..+...... .....+.. .+++|+|+||||+|+
T Consensus 442 ~~~~~~~~l~~~~~~~~e~~~~~~~lDalv~P~~~~~~~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~ 521 (566)
T PRK06565 442 TLPDGLRGLEKTRKLDLEDWMDGLGLDAVLFPTVADVGPADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGV 521 (566)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCccccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccc
Confidence 44555556666665 57788865 58899999999888765421110 01233444 489999999999998
Q ss_pred C-CCCCceeeEEEcCCCCCCCC
Q psy8288 157 G-SNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 157 ~-~~GLPvGvQlvg~~~~D~~l 177 (177)
. +.|+|+||+|+|+.|+|..|
T Consensus 522 ~~~~G~PvGl~~~G~a~~e~~L 543 (566)
T PRK06565 522 MADIGMPVGLTFAGRAYDDNAL 543 (566)
T ss_pred cCCCCCCeeEEeecCCcchHHH
Confidence 7 57999999999999999754
No 32
>KOG1211|consensus
Probab=99.03 E-value=3.9e-10 Score=100.49 Aligned_cols=85 Identities=19% Similarity=0.282 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHH---HHhcCCCEEEcCCCCcCccccccc----cccccccccchhhhhcCCCeeeeecCCCCCCCce
Q psy8288 91 DTLLAKKKDLMKKFR---DMLGDNGVFLFPTFINSAHYHYQI----HYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPV 163 (177)
Q Consensus 91 ~~a~~~~~~~~~~~~---~~~~~~Dvll~Pt~~~~Ap~~~~~----~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPv 163 (177)
.+|.+.++-.+.++. +.+++.|+|+.||.+.+.....+. ........++.+.|+.|+|++++|+|+..+|+|+
T Consensus 391 ~~a~~~rr~i~~~~~~~~~~~~~vD~l~~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~ 470 (506)
T KOG1211|consen 391 EKALEVRRLIQEDFNRRKAALEGVDYLVTPTAPPPLYREFEKETLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPI 470 (506)
T ss_pred HHHHHHHHHHHHhhhhcccccccCCeeeccCCCCcchhhhhhcccccccccccceeecccccCCCceEEeeeecCCCCce
Confidence 445555555555566 678899999999944333322221 0112235678999999999999999999999999
Q ss_pred eeEEEcCCCCCC
Q psy8288 164 GFQVSLALVTSK 175 (177)
Q Consensus 164 GvQlvg~~~~D~ 175 (177)
|+|++|..++|.
T Consensus 471 glqi~g~~~~e~ 482 (506)
T KOG1211|consen 471 GLQIMGGAFAEP 482 (506)
T ss_pred EEEeecccccch
Confidence 999999999997
Done!