Query psy8288
Match_columns 177
No_of_seqs 225 out of 1317
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 23:39:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2q_A 6-aminohexanoate-cyclic 99.9 6E-22 2E-26 175.5 10.1 160 16-176 282-462 (493)
2 1o9p_A Malonamidase E2; malona 99.8 1.4E-21 4.6E-26 170.0 8.4 154 16-176 244-398 (414)
3 2dc0_A Probable amidase; struc 99.8 1.4E-21 4.6E-26 170.9 4.3 155 16-176 258-421 (434)
4 3a1k_A Amidase; AS family enzy 99.8 1.3E-20 4.4E-25 168.2 6.4 92 84-176 390-489 (521)
5 3kfu_E Glutamyl-tRNA(Gln) amid 99.8 1.7E-20 5.8E-25 165.6 5.6 90 86-176 354-446 (471)
6 2gi3_A Glutamyl-tRNA(Gln) amid 99.8 2E-20 6.9E-25 165.1 4.6 88 88-176 359-449 (476)
7 3h0l_A Glutamyl-tRNA(Gln) amid 99.8 4E-20 1.4E-24 163.4 4.9 88 88-176 366-457 (478)
8 3ip4_A Glutamyl-tRNA(Gln) amid 99.8 7.2E-20 2.5E-24 161.9 4.9 88 88-176 373-464 (485)
9 3ppm_A Fatty-acid amide hydrol 99.8 7.3E-19 2.5E-23 158.3 9.0 94 83-177 431-555 (573)
10 1m22_A Peptide amidase, PAM; e 99.7 1.1E-18 3.6E-23 155.1 6.2 90 84-176 379-472 (503)
No 1
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=99.86 E-value=6e-22 Score=175.53 Aligned_cols=160 Identities=14% Similarity=0.091 Sum_probs=112.8
Q ss_pred cccHHHHHHhhCcccchhhhHHH--HHhhhhhhhhccchhHHHHHHHHHhcC--CCCChhhHHHHHHHHhcccCCHHHHH
Q psy8288 16 NFSLDWFRALLAGVFDMELKRLF--IYRMLTLCFQVWSHSVTKEVLKWLMFS--SKFTTTTVLYGVIKKAADCFSQRKID 91 (177)
Q Consensus 16 ~~a~~~~~~~~a~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~y~ 91 (177)
..+++.++++|+.+++++++... ............+.....+.+....+. ....+.+..+..++.+ ..++..+|.
T Consensus 282 ~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~ 360 (493)
T 3a2q_A 282 RGAAAALAALGHDVNDAYPEALGDRSFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRA-DQVTGRAFA 360 (493)
T ss_dssp HHHHHHHHHTTCEEEECCCGGGGCCTHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHH-HTCCHHHHH
T ss_pred HHHHHHHHHCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhh-ccCCHHHHH
Confidence 44677889999998766555211 011111111111111111222333332 2234566666666664 578999999
Q ss_pred HHHHHHHHHHHHHHHHh-cCCCEEEcCCCCcCcccccccccc---------------c-cccccchhhhhcCCCeeeeec
Q psy8288 92 TLLAKKKDLMKKFRDML-GDNGVFLFPTFINSAHYHYQIHYK---------------F-LNYGYVGLFNLLEMPVTNVTV 154 (177)
Q Consensus 92 ~a~~~~~~~~~~~~~~~-~~~Dvll~Pt~~~~Ap~~~~~~~~---------------~-~~~~~t~~~Nl~G~PaisvP~ 154 (177)
++++.+.++++++.++| +++|+||+||++.+||+++..... . ....||.+||++|+|++|||+
T Consensus 361 ~a~~~r~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~ 440 (493)
T 3a2q_A 361 ACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPI 440 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCceeccC
Confidence 99999999999999999 999999999999999998753211 0 114689999999999999999
Q ss_pred CCCCCCCceeeEEEcCCCCCCC
Q psy8288 155 GLGSNKLPVGFQVSLALVTSKA 176 (177)
Q Consensus 155 g~~~~GLPvGvQlvg~~~~D~~ 176 (177)
|++.+|||+||||+|++++|+.
T Consensus 441 g~~~~GlPvGvQlvg~~~~d~~ 462 (493)
T 3a2q_A 441 GMSSDGMPIGVQIVAAYGREDL 462 (493)
T ss_dssp EECTTSCEEEEEEEESTTCHHH
T ss_pred CcCCCCCCeEEEEecCCCChHH
Confidence 9988999999999999999975
No 2
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=99.85 E-value=1.4e-21 Score=170.03 Aligned_cols=154 Identities=15% Similarity=0.119 Sum_probs=109.5
Q ss_pred cccHHHHHHhhCcccchhhhHHHH-HhhhhhhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHHH
Q psy8288 16 NFSLDWFRALLAGVFDMELKRLFI-YRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLL 94 (177)
Q Consensus 16 ~~a~~~~~~~~a~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~ 94 (177)
..+++.++++|+.+++++++.... ........... +....+..........+.+..+..++.+ ..++..+|.+++
T Consensus 244 ~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~a~ 319 (414)
T 1o9p_A 244 QAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDF---EAHRALAWEFSEHHDEIAPMLRASLDAT-VGLTPKEYDEAR 319 (414)
T ss_dssp HHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHHHHH---HHHHHTHHHHHHSGGGSCHHHHHHHHHT-TTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEecCcchHHHHHHHHHHHHHH---HHHHHHHHHHHhChhhcCHHHHHHHHhc-cCCCHHHHHHHH
Confidence 456788899999988776653321 11111111111 1111111111111123445555556654 578999999999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCC
Q psy8288 95 AKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTS 174 (177)
Q Consensus 95 ~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D 174 (177)
+.++++++++.++|+++|+||+||++.+||+++... .....||.+||++|+|++|||+|++. |||+||||+|++++|
T Consensus 320 ~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~--~~~~~~t~~~nl~G~PaisvP~g~~~-GlPvGvqlvg~~~~d 396 (414)
T 1o9p_A 320 RIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALAS--TGDPRYNRLWTLMGNPCVNVPVLKVG-GLPIGVQVIARFGND 396 (414)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCC--CCCGGGTHHHHHHCCCEEEEEEEEET-TEEEEEEEEESTTCH
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccC--CcccchhhhhHhcCCCeEEeeCCCCC-CCCeEEEEECCCCCh
Confidence 999999999999999999999999999999986521 12347899999999999999999877 999999999999999
Q ss_pred CC
Q psy8288 175 KA 176 (177)
Q Consensus 175 ~~ 176 (177)
+.
T Consensus 397 ~~ 398 (414)
T 1o9p_A 397 AH 398 (414)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 3
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=99.83 E-value=1.4e-21 Score=170.91 Aligned_cols=155 Identities=15% Similarity=0.057 Sum_probs=107.3
Q ss_pred cccHHHHHHhhCcccchhhhHHHHHhhhhhhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHHHH
Q psy8288 16 NFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLA 95 (177)
Q Consensus 16 ~~a~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~~ 95 (177)
+.+++.++++|+.+++++++ ............. .+....+..........+.+..+..++.+ ..++..+|.++++
T Consensus 258 ~~a~~~L~~~G~~v~~~~~p-~~~~~~~~~~~~~---~e~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~a~~ 332 (434)
T 2dc0_A 258 TRLLEDLPALRAEVREVSLP-LEGVYEVYTRLVR---YEAARIHEKALKEHPEGFSPQVREALLAG-LALTEKDYRDAVA 332 (434)
T ss_dssp HHHHHHTTTTTCEEEECCCC-CTTHHHHHHHHHH---HHHHHHSHHHHHHCGGGSCHHHHHHHHHH-HHSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEeCCC-cHHHHHHHHHHHH---HHHHHHHHHHHHhchhhcCHHHHHHHHhc-CCCCHHHHHHHHH
Confidence 45667778889888776655 2111111111111 11111111111111123444455555553 5789999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc-----c---ccc-cccchhhhhcCCCeeeeecCCCCCCCceeeE
Q psy8288 96 KKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY-----K---FLN-YGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQ 166 (177)
Q Consensus 96 ~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~-----~---~~~-~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQ 166 (177)
.++++++++.++|+++|+||+||+|.+||+++.... . ... ..||.+||++|+|++|||+|+ .+|||+|||
T Consensus 333 ~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGvq 411 (434)
T 2dc0_A 333 EREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAK-VEGMPVGLQ 411 (434)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhhhhhhhhhhhhhhhhCCCeEEEecCC-CCCCCeEEE
Confidence 999999999999999999999999999999875421 0 011 568999999999999999999 899999999
Q ss_pred EEcCCCCCCC
Q psy8288 167 VSLALVTSKA 176 (177)
Q Consensus 167 lvg~~~~D~~ 176 (177)
|+|++++|+.
T Consensus 412 lvg~~~~d~~ 421 (434)
T 2dc0_A 412 VVGAYGEDGK 421 (434)
T ss_dssp EECCTTCHHH
T ss_pred EECCCCchHH
Confidence 9999999974
No 4
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=99.81 E-value=1.3e-20 Score=168.15 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc--------ccccccchhhhhcCCCeeeeecC
Q psy8288 84 CFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK--------FLNYGYVGLFNLLEMPVTNVTVG 155 (177)
Q Consensus 84 ~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~--------~~~~~~t~~~Nl~G~PaisvP~g 155 (177)
.++..+|.++++.+.+++++++++|+++|+||+||+|.+||+++..... .....||.+||++|+|++|||+|
T Consensus 390 ~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g 469 (521)
T 3a1k_A 390 TLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAG 469 (521)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecc
Confidence 4667799999999999999999999999999999999999998753110 01246799999999999999999
Q ss_pred CCCCCCceeeEEEcCCCCCCC
Q psy8288 156 LGSNKLPVGFQVSLALVTSKA 176 (177)
Q Consensus 156 ~~~~GLPvGvQlvg~~~~D~~ 176 (177)
+ .+|||+||||+|++|+|+.
T Consensus 470 ~-~~GlPvGlQlvg~~~~d~~ 489 (521)
T 3a1k_A 470 L-VNGLPVGMMITGRHFDDAT 489 (521)
T ss_dssp E-ETTEEEEEEEECSTTCHHH
T ss_pred c-CCCCCeeEEEEcCCCCHHH
Confidence 9 7899999999999999975
No 5
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=99.80 E-value=1.7e-20 Score=165.56 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc---cccccccchhhhhcCCCeeeeecCCCCCCCc
Q psy8288 86 SQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY---KFLNYGYVGLFNLLEMPVTNVTVGLGSNKLP 162 (177)
Q Consensus 86 ~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~---~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLP 162 (177)
+..+|.++++.+.++++++.++|+++|+||+||+|.+||+++.... ......||.+||++|+|++|||+|+ .+|||
T Consensus 354 ~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlP 432 (471)
T 3kfu_E 354 YEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF-EGHLP 432 (471)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTCSHHHHHGGGTTTHHHHHHCCCEEEEEEEE-ETTEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCCCCCccccccchHHHHHHhhhhhcchhhCCCeEEEeCCC-CCCCC
Confidence 3457999999999999999999999999999999999999875321 0112348999999999999999999 89999
Q ss_pred eeeEEEcCCCCCCC
Q psy8288 163 VGFQVSLALVTSKA 176 (177)
Q Consensus 163 vGvQlvg~~~~D~~ 176 (177)
+||||+|++++|+.
T Consensus 433 vGlQlvg~~~~D~~ 446 (471)
T 3kfu_E 433 VGLQLLAPWGEDER 446 (471)
T ss_dssp EEEEEECSTTCHHH
T ss_pred eEEEEECCCCCHHH
Confidence 99999999999975
No 6
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=99.80 E-value=2e-20 Score=165.08 Aligned_cols=88 Identities=22% Similarity=0.260 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccc---cccccccccchhhhhcCCCeeeeecCCCCCCCcee
Q psy8288 88 RKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQI---HYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVG 164 (177)
Q Consensus 88 ~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~---~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvG 164 (177)
.+|.++++.|.+++++++++|+++|+||+||+|.+||+++.. ........||.++|++|+|++|||+|++ +|||+|
T Consensus 359 ~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvG 437 (476)
T 2gi3_A 359 AYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVG 437 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhhccceeccccccCCceEEEecccC-CCCCeE
Confidence 478899999999999999999999999999999999998751 1111224689999999999999999985 899999
Q ss_pred eEEEcCCCCCCC
Q psy8288 165 FQVSLALVTSKA 176 (177)
Q Consensus 165 vQlvg~~~~D~~ 176 (177)
|||+|++++|+.
T Consensus 438 vqlvg~~~~d~~ 449 (476)
T 2gi3_A 438 VQVIGRRFADGK 449 (476)
T ss_dssp EEEECCTTCHHH
T ss_pred EEEEcCCCCHHH
Confidence 999999999975
No 7
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=99.79 E-value=4e-20 Score=163.38 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccccc----cccccchhhhhcCCCeeeeecCCCCCCCce
Q psy8288 88 RKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKF----LNYGYVGLFNLLEMPVTNVTVGLGSNKLPV 163 (177)
Q Consensus 88 ~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~~----~~~~~t~~~Nl~G~PaisvP~g~~~~GLPv 163 (177)
.+|.++++.|.++++++.++|+++|+||+||+|.+||+++...... ....||.+||++|+|++|||+|+ .+|||+
T Consensus 366 ~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPv 444 (478)
T 3h0l_A 366 AYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-KDGLPV 444 (478)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccCChHhhhhhhhhhhhhHhhCCCeEEEeCCC-CCCCCe
Confidence 4688999999999999999999999999999999999987642111 11258999999999999999999 889999
Q ss_pred eeEEEcCCCCCCC
Q psy8288 164 GFQVSLALVTSKA 176 (177)
Q Consensus 164 GvQlvg~~~~D~~ 176 (177)
||||+|++++|+.
T Consensus 445 GlQlvg~~~~D~~ 457 (478)
T 3h0l_A 445 GGQLIGKHWDETT 457 (478)
T ss_dssp EEEEEECTTCHHH
T ss_pred EEEEECCCCCHHH
Confidence 9999999999975
No 8
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=99.78 E-value=7.2e-20 Score=161.94 Aligned_cols=88 Identities=18% Similarity=0.145 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc----ccccccchhhhhcCCCeeeeecCCCCCCCce
Q psy8288 88 RKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK----FLNYGYVGLFNLLEMPVTNVTVGLGSNKLPV 163 (177)
Q Consensus 88 ~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~----~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPv 163 (177)
.+|.++++.|.++++++.++|+++|+||+||+|.+||+++..... .....||.+||++|+|++|||+|++ +|||+
T Consensus 373 ~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPv 451 (485)
T 3ip4_A 373 AYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPI 451 (485)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCE
Confidence 458899999999999999999999999999999999998763211 1123589999999999999999996 89999
Q ss_pred eeEEEcCCCCCCC
Q psy8288 164 GFQVSLALVTSKA 176 (177)
Q Consensus 164 GvQlvg~~~~D~~ 176 (177)
||||+|++++|+.
T Consensus 452 Glqlvg~~~~d~~ 464 (485)
T 3ip4_A 452 GLQFIGKPFDEKT 464 (485)
T ss_dssp EEEEECSTTCHHH
T ss_pred eEEEEcCCCCHHH
Confidence 9999999999975
No 9
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=99.76 E-value=7.3e-19 Score=158.29 Aligned_cols=94 Identities=20% Similarity=0.096 Sum_probs=79.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCC---
Q psy8288 83 DCFSQRKIDTLLAKKKDLMKKFRDMLG--DNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLG--- 157 (177)
Q Consensus 83 ~~~~~~~y~~a~~~~~~~~~~~~~~~~--~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~--- 157 (177)
...+..+|+++..++.++++++.+.|+ ++|+||||+ +.+|++|+..........||.+||++|+|+++||+|+.
T Consensus 431 ~~~s~~e~~~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~~~~~~~YT~l~NLLDyPA~vVPvg~v~~~ 509 (573)
T 3ppm_A 431 RPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVTTVTAE 509 (573)
T ss_dssp SBCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGGCGGGGHHHHHHHHTTCCEEEEEEEECCHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhcCCCEeeCCC-CCCCcCCccccccccccchhhhhHhhCCCeEEEeccccccc
Confidence 467889999999999999999999996 599999999 55888887532222346899999999999999999864
Q ss_pred --------------------------CCCCceeeEEEcCCCCCCCC
Q psy8288 158 --------------------------SNKLPVGFQVSLALVTSKAV 177 (177)
Q Consensus 158 --------------------------~~GLPvGvQlvg~~~~D~~l 177 (177)
.+|+||||||||++++|++|
T Consensus 510 ~d~~~~~~~~~~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEkl 555 (573)
T 3ppm_A 510 DDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELC 555 (573)
T ss_dssp HHHHHTTCCCSSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHH
T ss_pred ccccccccccccchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHH
Confidence 37999999999999999753
No 10
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=99.74 E-value=1.1e-18 Score=155.06 Aligned_cols=90 Identities=13% Similarity=0.040 Sum_probs=74.5
Q ss_pred cCCHHHHHHHHHHHHHHHHH--HHHHhcC--CCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCCC
Q psy8288 84 CFSQRKIDTLLAKKKDLMKK--FRDMLGD--NGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSN 159 (177)
Q Consensus 84 ~~~~~~y~~a~~~~~~~~~~--~~~~~~~--~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~ 159 (177)
.++..+|.++++.+++++++ +.++|++ +|+||+||+ .++|+++... ......||.+||++|+|++|||+|++ +
T Consensus 379 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~-~~~~~~~t~~~nl~G~PaisvP~g~~-~ 455 (503)
T 1m22_A 379 GLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEG-DDFPGESYSAAAVAGYPSLTVPMGQI-D 455 (503)
T ss_dssp CTTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC----CCTTCCHHHHHHHTCCEEEEEEEEE-T
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCccccccc-CcccccccccchhhCCCeEEeccccC-C
Confidence 57888999999999988876 9999985 899999999 4666665221 11125689999999999999999985 8
Q ss_pred CCceeeEEEcCCCCCCC
Q psy8288 160 KLPVGFQVSLALVTSKA 176 (177)
Q Consensus 160 GLPvGvQlvg~~~~D~~ 176 (177)
|||+||||+|++|+|+.
T Consensus 456 GlPvGvqlvg~~~~d~~ 472 (503)
T 1m22_A 456 GLPVGLLFMGTAWSEPK 472 (503)
T ss_dssp TEEEEEEEECSTTCHHH
T ss_pred CCCeEEEEECCCCChHH
Confidence 99999999999999975
Done!