Query psy8288
Match_columns 177
No_of_seqs 225 out of 1317
Neff 7.3
Searched_HMMs 13730
Date Fri Aug 16 23:40:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8288.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8288hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ocka_ c.117.1.1 (A:) Malonam 99.8 5E-22 3.6E-26 168.4 8.4 155 16-176 244-398 (412)
2 d1mt5a_ c.117.1.1 (A:) Fatty a 99.8 1.9E-19 1.4E-23 157.3 11.0 93 83-176 401-524 (537)
3 d2gi3a1 c.117.1.1 (A:1-475) Gl 99.8 7.1E-20 5.2E-24 157.6 4.5 88 88-176 358-448 (475)
4 d2f2aa1 c.117.1.1 (A:1-485) Gl 99.8 1.3E-19 9.6E-24 156.4 4.5 92 84-176 369-464 (485)
5 d1m22a_ c.117.1.1 (A:) Peptide 99.7 2E-17 1.4E-21 141.8 7.8 89 85-176 376-468 (490)
6 d1u11a_ c.23.8.1 (A:) N5-CAIR 13.3 46 0.0034 22.8 2.1 31 139-169 73-117 (159)
7 d1qcza_ c.23.8.1 (A:) N5-CAIR 12.9 52 0.0038 22.6 2.3 31 139-169 72-116 (163)
8 d2h80a1 a.60.1.3 (A:11-81) Del 12.3 34 0.0025 20.2 0.9 11 17-27 13-23 (71)
9 d1f0ka_ c.87.1.2 (A:) Peptidog 12.1 54 0.0039 23.4 2.3 14 142-155 264-277 (351)
10 d1xmpa_ c.23.8.1 (A:) N5-CAIR 11.5 58 0.0042 22.2 2.2 31 139-169 72-116 (155)
No 1
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]}
Probab=99.85 E-value=5e-22 Score=168.38 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=111.3
Q ss_pred cccHHHHHHhhCcccchhhhHHHHHhhhhhhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHHHH
Q psy8288 16 NFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLA 95 (177)
Q Consensus 16 ~~a~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~~ 95 (177)
..+++.++++|+.+++.+.+.....-.... ......+....++.........+.+..+...+.+ ..++..+|.+++.
T Consensus 244 ~~a~~~L~~~G~~v~e~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~ 320 (412)
T d1ocka_ 244 QAAIKAAERAGASVQAIDLPEAVHEAWRIH--PIIQDFEAHRALAWEFSEHHDEIAPMLRASLDAT-VGLTPKEYDEARR 320 (412)
T ss_dssp HHHHHHHHHTTCEEEECCCCHHHHHHHHHH--HHHHHHHHHHHTHHHHHHSGGGSCHHHHHHHHHT-TTCCHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccchhhhhhhhh--hhhhhHHHHHHHHHhhccccccchhhhhhhhhhh-hccccccchhhhh
Confidence 457788899999997666554332211111 0001112222222222222223455566666664 6889999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCC
Q psy8288 96 KKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSK 175 (177)
Q Consensus 96 ~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~ 175 (177)
.+.++++++.++|+++|+||+||+|.+||.++.. ...+..||.+||++|+|++|||+|. .+|||+||||+|++++|+
T Consensus 321 ~r~~~~~~~~~~f~~~D~ll~Pt~p~~ap~~~~~--~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQiig~~~~D~ 397 (412)
T d1ocka_ 321 IGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALA--STGDPRYNRLWTLMGNPCVNVPVLK-VGGLPIGVQVIARFGNDA 397 (412)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGC--CCCCCTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEEECTTCHH
T ss_pred hHHHHHHHHHHHHcCCCEEEeCCCCCCCcccccc--ccCChHHhHHHHHHCCCeEEEeccC-CCCceEeEEEECCCCCHH
Confidence 9999999999999999999999999999877542 2234568999999999999999985 899999999999999997
Q ss_pred C
Q psy8288 176 A 176 (177)
Q Consensus 176 ~ 176 (177)
.
T Consensus 398 ~ 398 (412)
T d1ocka_ 398 H 398 (412)
T ss_dssp H
T ss_pred H
Confidence 4
No 2
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.79 E-value=1.9e-19 Score=157.29 Aligned_cols=93 Identities=20% Similarity=0.092 Sum_probs=79.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCC----
Q psy8288 83 DCFSQRKIDTLLAKKKDLMKKFRDMLG--DNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGL---- 156 (177)
Q Consensus 83 ~~~~~~~y~~a~~~~~~~~~~~~~~~~--~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~---- 156 (177)
...+..+|.++..++..+++.+.+.|+ ++|+||+||++ ++++++..........||.+||++|+|++|||+|+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvll~Pt~~-pa~~~~~~~~~~~~~~~T~~~NllG~PaisvP~g~v~~~ 479 (537)
T d1mt5a_ 401 RPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLG-PALDLNTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAE 479 (537)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCC-SCCCSSCGGGCGGGGHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCC-CccCcCChhhhhcccchHHHHHHhCCCeEEEEcCccccc
Confidence 467889999999999999999999997 58999999998 55566544333445689999999999999999997
Q ss_pred -------------------------CCCCCceeeEEEcCCCCCCC
Q psy8288 157 -------------------------GSNKLPVGFQVSLALVTSKA 176 (177)
Q Consensus 157 -------------------------~~~GLPvGvQlvg~~~~D~~ 176 (177)
+.+||||||||+|++|+|+.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GLPvGlQlvg~~~~D~~ 524 (537)
T d1mt5a_ 480 DDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEEL 524 (537)
T ss_dssp TTTGGGSCCCSSCSHHHHHHHHHHSSCTTCEEEEEEECCTTCHHH
T ss_pred ccccccccccccccccccccccccCCCCCCCEeEEEECCCCCHHH
Confidence 56799999999999999975
No 3
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}
Probab=99.76 E-value=7.1e-20 Score=157.57 Aligned_cols=88 Identities=23% Similarity=0.273 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc---cccccccchhhhhcCCCeeeeecCCCCCCCcee
Q psy8288 88 RKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY---KFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVG 164 (177)
Q Consensus 88 ~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~---~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvG 164 (177)
..+.++.+.+.++...+.++|+++|+||+||++.+||++++... ......||.++|++|+|++|||+|+ .+|||+|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~-s~GlPvG 436 (475)
T d2gi3a1 358 AYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF-SNNLPVG 436 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEE-ETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccccchHHHhhhhHHHHHHHHHCCCeEEEeCCC-CCCCCEe
Confidence 34456667788888899999999999999999999999876321 1123458999999999999999998 5899999
Q ss_pred eEEEcCCCCCCC
Q psy8288 165 FQVSLALVTSKA 176 (177)
Q Consensus 165 vQlvg~~~~D~~ 176 (177)
|||+|++++|+.
T Consensus 437 vQlig~~~~D~~ 448 (475)
T d2gi3a1 437 VQVIGRRFADGK 448 (475)
T ss_dssp EEEECCTTCHHH
T ss_pred EEEECCCCCHHH
Confidence 999999999975
No 4
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]}
Probab=99.75 E-value=1.3e-19 Score=156.39 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=78.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc----ccccccchhhhhcCCCeeeeecCCCCC
Q psy8288 84 CFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK----FLNYGYVGLFNLLEMPVTNVTVGLGSN 159 (177)
Q Consensus 84 ~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~----~~~~~~t~~~Nl~G~PaisvP~g~~~~ 159 (177)
......|.++.+.+..+++.++++|+++|+||+||++.+||++++.... .....||.++|++|+|++|||+|+ ++
T Consensus 369 ~~~~a~~~~~~~~~~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~-~d 447 (485)
T d2f2aa1 369 GYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQ-SN 447 (485)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ET
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccCCEEEeCCCCCCCCCcccccCCHHHHhhhhHHHHHHHHHCCCeEEEECCC-CC
Confidence 4455667888888899999999999999999999999999998764321 123458999999999999999997 68
Q ss_pred CCceeeEEEcCCCCCCC
Q psy8288 160 KLPVGFQVSLALVTSKA 176 (177)
Q Consensus 160 GLPvGvQlvg~~~~D~~ 176 (177)
|+|+||||+|++|+|+.
T Consensus 448 GlPvGlQiig~~~~D~~ 464 (485)
T d2f2aa1 448 GRPIGLQFIGKPFDEKT 464 (485)
T ss_dssp TEEEEEEEECSTTCHHH
T ss_pred CCCEeEEEECCCCCHHH
Confidence 99999999999999975
No 5
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]}
Probab=99.68 E-value=2e-17 Score=141.77 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHHHH--HHHH--HhcCCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCCCC
Q psy8288 85 FSQRKIDTLLAKKKDLMK--KFRD--MLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNK 160 (177)
Q Consensus 85 ~~~~~y~~a~~~~~~~~~--~~~~--~~~~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~G 160 (177)
.....+..++..++++.. .++. .++++|+||+||++.++|...... .....+|.++|++|+|++|||+|+ .+|
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~li~Pt~~~~~p~~~~~~--~~~~~~t~~~Nl~G~PaisvP~G~-~~G 452 (490)
T d1m22a_ 376 LADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGD--DFPGESYSAAAVAGYPSLTVPMGQ-IDG 452 (490)
T ss_dssp TTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC-----CCTTCCHHHHHHHTCCEEEEEEEE-ETT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCCccCCcCcccc--cchHHHHHHHHHhCCCEEEEECCC-CCC
Confidence 334445555444433322 2332 467899999999999887654421 123467889999999999999997 689
Q ss_pred CceeeEEEcCCCCCCC
Q psy8288 161 LPVGFQVSLALVTSKA 176 (177)
Q Consensus 161 LPvGvQlvg~~~~D~~ 176 (177)
||+||||+|++++|+.
T Consensus 453 LPvGlQlig~~~~D~~ 468 (490)
T d1m22a_ 453 LPVGLLFMGTAWSEPK 468 (490)
T ss_dssp EEEEEEEECSTTCHHH
T ss_pred CceeEEEECCCCCHHH
Confidence 9999999999999975
No 6
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
Probab=13.33 E-value=46 Score=22.80 Aligned_cols=31 Identities=23% Similarity=0.138 Sum_probs=22.3
Q ss_pred chhhhhcCCCeeeeecCCC--------------CCCCceeeEEEc
Q psy8288 139 VGLFNLLEMPVTNVTVGLG--------------SNKLPVGFQVSL 169 (177)
Q Consensus 139 t~~~Nl~G~PaisvP~g~~--------------~~GLPvGvQlvg 169 (177)
+.+...+-+|.|.||+... ..|.|+|...+|
T Consensus 73 gvva~~t~~PVIgvP~~~~~~~g~d~l~S~~qMP~g~pv~tv~vg 117 (159)
T d1u11a_ 73 GMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIG 117 (159)
T ss_dssp HHHHHHCSSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSS
T ss_pred cceeeecceeEEEeccccccccccccHHHHhhCcCCCCceEEEec
Confidence 4567788899999997532 257788877664
No 7
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Probab=12.85 E-value=52 Score=22.59 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=22.0
Q ss_pred chhhhhcCCCeeeeecCCC--------------CCCCceeeEEEc
Q psy8288 139 VGLFNLLEMPVTNVTVGLG--------------SNKLPVGFQVSL 169 (177)
Q Consensus 139 t~~~Nl~G~PaisvP~g~~--------------~~GLPvGvQlvg 169 (177)
..+...+-.|.|.||+... ..|.|+|...++
T Consensus 72 gvvA~~t~~PVIgVP~~~~~~~g~d~lls~~qMp~g~pv~tv~v~ 116 (163)
T d1qcza_ 72 GMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIG 116 (163)
T ss_dssp HHHHHSCSSCEEEEECCCTTTTTHHHHHHHHTCCTTCCCEECCSS
T ss_pred chhhHhccceeeeccccccccCCcchhhHHhhccCCCCceEEEEe
Confidence 4467788899999999432 247788876664
No 8
>d2h80a1 a.60.1.3 (A:11-81) Deleted in Liver Cancer 2, DLC2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.30 E-value=34 Score=20.24 Aligned_cols=11 Identities=36% Similarity=0.480 Sum_probs=9.1
Q ss_pred ccHHHHHHhhC
Q psy8288 17 FSLDWFRALLA 27 (177)
Q Consensus 17 ~a~~~~~~~~a 27 (177)
.|++|+|+.|=
T Consensus 13 eAC~WLraaGF 23 (71)
T d2h80a1 13 EACDWLRAAGF 23 (71)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 58899999884
No 9
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Probab=12.09 E-value=54 Score=23.39 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=11.4
Q ss_pred hhhcCCCeeeeecC
Q psy8288 142 FNLLEMPVTNVTVG 155 (177)
Q Consensus 142 ~Nl~G~PaisvP~g 155 (177)
.-.+|.|++.+|..
T Consensus 264 al~~g~P~I~iP~~ 277 (351)
T d1f0ka_ 264 IAAAGLPALFVPFQ 277 (351)
T ss_dssp HHHHTCCEEECCCC
T ss_pred HHHhCCceeeeecc
Confidence 45789999999974
No 10
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Probab=11.53 E-value=58 Score=22.18 Aligned_cols=31 Identities=19% Similarity=0.103 Sum_probs=21.2
Q ss_pred chhhhhcCCCeeeeecCCC--------------CCCCceeeEEEc
Q psy8288 139 VGLFNLLEMPVTNVTVGLG--------------SNKLPVGFQVSL 169 (177)
Q Consensus 139 t~~~Nl~G~PaisvP~g~~--------------~~GLPvGvQlvg 169 (177)
+.+...+.+|.|.||+... ..|.|+|...++
T Consensus 72 gvva~~t~~PVIgVP~~~~~~~G~d~llS~vqMP~Gipv~tv~v~ 116 (155)
T d1xmpa_ 72 GMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIG 116 (155)
T ss_dssp HHHHTTCCSCEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSS
T ss_pred hHHHHhccceEEEEEeecccCcCcccHHHHHhCccCCCceEEEec
Confidence 4467778889999998532 256777766554
Done!