RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8288
         (177 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.4 bits (78), Expect = 0.017
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 26/90 (28%)

Query: 33  ELKRLFIYRMLTLCF----QVWSHSVTKEVLKWLMFSSK--FTT-----TTVLYG----- 76
           EL+RL   +    C      V +     +       S K   TT     T  L       
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQN----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 77  -VIKKAADCFSQRKIDTLLAK-----KKDL 100
             +   +   +  ++ +LL K      +DL
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318



 Score = 27.9 bits (61), Expect = 2.5
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 27/130 (20%)

Query: 56  KEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKF-RDMLGDNGVF 114
           K+V       S  +   + + ++ K A   + R   TLL+K++++++KF  ++L  N  F
Sbjct: 36  KDVQDMP--KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93

Query: 115 LFPTFIN-----SAHYHYQIHYKFLNYGYVGLF----------------NLLEM-PVTNV 152
           L           S      I  +   Y    +F                 LLE+ P  NV
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 153 TV-G-LGSNK 160
            + G LGS K
Sbjct: 154 LIDGVLGSGK 163


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.2 bits (65), Expect = 0.88
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 42/127 (33%)

Query: 24   AL--LAGVFDME--LKRLFI------------------YRMLTLCFQVWSHSVTKEVLKW 61
            AL  LA V  +E  ++ +F                   Y M+ +     + S ++E L++
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828

Query: 62   LMFSSKFTTTTVL----Y---G---VI---KKAADCFSQ-------RKIDTLLAKKKDLM 101
            ++      T  ++    Y       V     +A D  +        +KID +  +K   +
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888

Query: 102  KKFRDML 108
            ++    L
Sbjct: 1889 EEVEGHL 1895



 Score = 28.5 bits (63), Expect = 1.5
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 34/65 (52%)

Query: 74  LYGV------IKKAADC------FSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFIN 121
           LYG+       K  +        FS+RK+            KF      +  FL P    
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKL------------KF------SNRFL-PV--- 423

Query: 122 SAHYH 126
           ++ +H
Sbjct: 424 ASPFH 428


>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A
           catalytic subunit; SAM dependent methyltransferase; HET:
           SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37
           PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
          Length = 334

 Score = 28.6 bits (63), Expect = 0.97
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 8/79 (10%)

Query: 18  SLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTT-TTVLYG 76
            +     LL      E+  + I   L        ++ ++ ++  +   SKF+    + Y 
Sbjct: 178 DITETTRLLDVCTKREIPTIVISECL---LCYMHNNESQLLINTI--MSKFSHGLWISYD 232

Query: 77  VI--KKAADCFSQRKIDTL 93
            I   +  D F       L
Sbjct: 233 PIGGSQPNDRFGAIMQSNL 251


>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
           degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
          Length = 493

 Score = 28.3 bits (64), Expect = 1.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 138 YVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
           +   FN+   P  ++ +G+ S+ +P+G Q+
Sbjct: 424 FTVPFNVSGQPAISLPIGMSSDGMPIGVQI 453


>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
           c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
           1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
          Length = 414

 Score = 27.9 bits (63), Expect = 1.7
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 141 LFNLLEMPVTNVTVGLGSNKLPVGFQV 167
           L+ L+  P  NV V      LP+G QV
Sbjct: 364 LWTLMGNPCVNVPVL-KVGGLPIGVQV 389


>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase;
           1.95A {Salvia fruticosa}
          Length = 569

 Score = 26.7 bits (58), Expect = 4.8
 Identities = 4/27 (14%), Positives = 11/27 (40%)

Query: 42  MLTLCFQVWSHSVTKEVLKWLMFSSKF 68
           +L+  F   + S+ +E  + +      
Sbjct: 429 ILSHLFFRLTDSIEEEAAESMHKYHDI 455


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0473    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,663,468
Number of extensions: 147616
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 14
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.2 bits)