RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8288
         (177 letters)



>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
           subunit A {Thermotoga maritima [TaxId: 2336]}
          Length = 475

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 101 MKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYG---YVGLFNLLEMPVTNVTVGLG 157
             +  ++L      L PT   +A    +I      Y    +    NL  +P  +V  G  
Sbjct: 371 SDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF- 429

Query: 158 SNKLPVGFQV 167
           SN LPVG QV
Sbjct: 430 SNNLPVGVQV 439


>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
           [TaxId: 375]}
          Length = 412

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 101 MKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNK 160
            ++  ++     V L  +   +A           +  Y  L+ L+  P  NV V      
Sbjct: 326 RRELGEVFEGVDVLLTYSAPGTAPAKALAST--GDPRYNRLWTLMGNPCVNVPVL-KVGG 382

Query: 161 LPVGFQV 167
           LP+G QV
Sbjct: 383 LPIGVQV 389


>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 85

 Score = 24.3 bits (53), Expect = 3.7
 Identities = 11/55 (20%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 96  KKKDLMKKFRDMLGDNG-----VFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLL 145
           +K++++++F+    D G     + +    IN+ + H ++H K  ++   GL  ++
Sbjct: 5   RKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVH-KKDHHSRRGLLKMV 58


>d1oxxk1 b.40.6.3 (K:243-352) Glucose transport protein GlcV,
           N-terminal domain {Archaeon Sulfolobus solfataricus
           [TaxId: 2287]}
          Length = 110

 Score = 23.9 bits (51), Expect = 8.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 143 NLLEMPVTNVTVGLGSNKLPV 163
           N LE  VTN  V +GS + PV
Sbjct: 3   NELEGKVTNEGVVIGSLRFPV 23


>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus
           [TaxId: 274]}
          Length = 84

 Score = 23.1 bits (50), Expect = 9.9
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 96  KKKDLMKKFRDMLGDNG-----VFLFPTFINSAHYHYQIH 130
           +K+ ++++F    GD G     V L    IN    H ++H
Sbjct: 4   EKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVH 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 651,751
Number of extensions: 28912
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 6
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.7 bits)