BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8289
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens
GN=RAD21 PE=1 SV=2
Length = 631
Score = 86.3 bits (212), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/48 (77%), Positives = 43/48 (89%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48
>sp|Q3SWX9|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus
GN=RAD21 PE=2 SV=1
Length = 630
Score = 85.9 bits (211), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/48 (77%), Positives = 43/48 (89%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48
>sp|Q61550|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus
GN=Rad21 PE=1 SV=3
Length = 635
Score = 85.9 bits (211), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/48 (77%), Positives = 43/48 (89%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48
>sp|O93310|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus
laevis GN=rad21 PE=1 SV=1
Length = 629
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/48 (77%), Positives = 43/48 (89%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPK 48
>sp|Q9H4I0|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo
sapiens GN=RAD21L1 PE=2 SV=3
Length = 556
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/48 (64%), Positives = 41/48 (85%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
MFY +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E +++ IL PK
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPK 48
>sp|A2AU37|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus
musculus GN=Rad21l1 PE=1 SV=2
Length = 552
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 30/48 (62%), Positives = 40/48 (83%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
MFY +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E ++ I+ PK
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPK 48
>sp|D2HSB3|RD21L_AILME Double-strand-break repair protein rad21-like protein 1
OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1
Length = 554
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/48 (62%), Positives = 40/48 (83%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
MFY +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E +++ IL K
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSK 48
>sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad21 PE=1 SV=1
Length = 628
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 42/59 (71%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQVTERLESR 59
MFY++ +L+KKGPLA++WLAAHW+KKL+K T+IE+SV I+ + + RL +
Sbjct: 1 MFYSEAILSKKGPLAKVWLAAHWEKKLSKVQTLHTSIEQSVHAIVTEETAPMALRLSGQ 59
>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana
GN=SYN2 PE=2 SV=2
Length = 810
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQVTERL 56
MFY+ ++++KGPL IW+AA++ KKL K+ V T+I SVD ILQ + + +T R+
Sbjct: 1 MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRV 56
>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana
GN=SYN3 PE=2 SV=2
Length = 693
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
MFY+ +LA+KGPL +W AAH ++L K+ NI +VD I+ P+
Sbjct: 1 MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPE 48
>sp|Q9S7T7|SCC11_ARATH Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana
GN=SYN1 PE=2 SV=2
Length = 627
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 7 VLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQP 47
+LA+K PL +IW+AA K+ + + + +I + + IL P
Sbjct: 17 LLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNP 57
>sp|Q914I4|GT048_SIFVH Putative glycosyltransferase 48 OS=Sulfolobus islandicus
filamentous virus (isolate Iceland/Hveragerdi)
GN=SIFV0048 PE=3 SV=1
Length = 309
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 7/38 (18%)
Query: 15 ARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQV 52
A++++ +H+ KKL + VDG+L+P FNQV
Sbjct: 85 AKVYVTSHYVKKLLNGTI-------HVDGVLRPPFNQV 115
>sp|Q9FQ27|TPSGB_SOLHA (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1
SV=1
Length = 544
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 7 VLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQVTERLESRKVCPG 64
VL+KKG L R++ A + KKL +A+ ET D I PK+ E +E+ V G
Sbjct: 347 VLSKKGKLDRVYYAKNEMKKLVRAYFKETQWLNDCDHI--PKYE---EHMENSLVSGG 399
>sp|O64961|TPSGC_SOLLC Germacrene C synthase OS=Solanum lycopersicum GN=SSTLE1 PE=1 SV=1
Length = 548
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 7 VLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQVTE 54
VL+K+G L R++ A + KKL +A+ ET D I PK+ + E
Sbjct: 351 VLSKEGKLDRVYYAKNEMKKLVRAYFKETQWLNDCDHI--PKYEEQVE 396
>sp|P53998|NAR1_KLULA Cytosolic Fe-S cluster assembly factor NAR1 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=NAR1 PE=3 SV=2
Length = 469
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 16/64 (25%)
Query: 23 WDKKLTKAHVFETNIEKSVDGILQPK-------------FNQVTERLESRKVCPGGDNFE 69
+DKKL + EK VD ++ PK + +TE S+++CP G +++
Sbjct: 216 FDKKLEAS---REECEKEVDCVITPKEFVAMLGDLSIDFKSYMTEYDSSKELCPSGWDYK 272
Query: 70 KHWF 73
HW
Sbjct: 273 LHWL 276
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,568,684
Number of Sequences: 539616
Number of extensions: 1332227
Number of successful extensions: 2855
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2843
Number of HSP's gapped (non-prelim): 19
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)