Query psy8289
Match_columns 91
No_of_seqs 106 out of 232
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 23:41:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ew4_A CYAY protein; friedreic 50.1 0.86 2.9E-05 29.8 -2.9 20 4-23 47-66 (106)
2 3t3l_A Frataxin, mitochondrial 41.7 1.4 4.9E-05 29.8 -2.9 19 4-22 60-78 (129)
3 3oeq_A Frataxin homolog, mitoc 36.7 2.1 7.1E-05 28.9 -2.7 19 4-22 66-84 (123)
4 2oqo_A Penicillin-binding prot 25.8 24 0.00083 25.1 1.2 25 13-37 94-118 (200)
5 3hzs_A Monofunctional glycosyl 24.8 26 0.00088 25.2 1.2 23 13-35 94-116 (209)
6 3vmt_A Monofunctional glycosyl 20.1 36 0.0012 25.4 1.2 23 13-35 147-169 (263)
7 1y6z_A Heat shock protein, put 17.2 30 0.001 25.7 0.1 20 54-74 73-92 (263)
8 3l9d_A SMU.1046C, putative GTP 13.6 1.3E+02 0.0045 22.0 2.9 34 54-91 108-149 (255)
9 2gq0_A Chaperone protein HTPG; 13.4 36 0.0012 25.9 -0.3 20 54-74 69-88 (303)
10 1usu_A Heat shock protein HSP8 12.9 32 0.0011 25.6 -0.7 20 54-74 71-90 (260)
No 1
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=50.07 E-value=0.86 Score=29.76 Aligned_cols=20 Identities=25% Similarity=0.785 Sum_probs=16.3
Q ss_pred chhhhhccCchhHHHHHhhh
Q psy8289 4 AQFVLAKKGPLARIWLAAHW 23 (91)
Q Consensus 4 s~~lLskkgpLa~iWlAA~~ 23 (91)
++-|++|..|.-+|||||-.
T Consensus 47 ~~~VINkQ~P~~QIWlaSp~ 66 (106)
T 1ew4_A 47 SKIIINRQEPLHQVWLATKQ 66 (106)
T ss_dssp CEEEEEEETTTTEEEEECSS
T ss_pred CEEEEeCCchhhhheEecCC
Confidence 34577889999999999854
No 2
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=41.70 E-value=1.4 Score=29.75 Aligned_cols=19 Identities=32% Similarity=0.737 Sum_probs=16.3
Q ss_pred chhhhhccCchhHHHHHhh
Q psy8289 4 AQFVLAKKGPLARIWLAAH 22 (91)
Q Consensus 4 s~~lLskkgpLa~iWlAA~ 22 (91)
++-|++|..|.-+||||+-
T Consensus 60 g~~VINkQ~P~~QIWLASp 78 (129)
T 3t3l_A 60 GTYVINKQTPNKAIWLSSP 78 (129)
T ss_dssp CEEEEEEETTTTEEEEECS
T ss_pred CEEEEeCCchhhHhheeCC
Confidence 4567889999999999986
No 3
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=36.72 E-value=2.1 Score=28.90 Aligned_cols=19 Identities=37% Similarity=0.788 Sum_probs=16.0
Q ss_pred chhhhhccCchhHHHHHhh
Q psy8289 4 AQFVLAKKGPLARIWLAAH 22 (91)
Q Consensus 4 s~~lLskkgpLa~iWlAA~ 22 (91)
++.+++|..|.-+||||+-
T Consensus 66 ~~~VINkQ~P~~QIWlaSp 84 (123)
T 3oeq_A 66 GTYVINKQPPNKQIWLASP 84 (123)
T ss_dssp CCEEEECCCSSSCCEEEET
T ss_pred CEEEEeCCChhhHHheecC
Confidence 4557788999999999985
No 4
>2oqo_A Penicillin-binding protein 1A (PBP-1A) (PBP1A); transferase; HET: EPE CPS; 2.10A {Aquifex aeolicus} SCOP: d.2.1.10 PDB: 3d3h_A* 3nb7_A 3nb6_A
Probab=25.79 E-value=24 Score=25.09 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=20.8
Q ss_pred chhHHHHHhhhccccchhhhhcccH
Q psy8289 13 PLARIWLAAHWDKKLTKAHVFETNI 37 (91)
Q Consensus 13 pLa~iWlAA~~~kkL~K~~i~~~dI 37 (91)
.+..+|+|--+|+++||++|++.=+
T Consensus 94 K~~E~~~A~~lE~~~sK~eILe~YL 118 (200)
T 2oqo_A 94 KIKEALLAIKIERTFDKKKIMELYL 118 (200)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 5677899999999999999887543
No 5
>3hzs_A Monofunctional glycosyltransferase; transglycosylase, peptidoglycan, moenomycin, membrane, cell shape; HET: M0E; 2.10A {Staphylococcus aureus subsp} SCOP: d.2.1.0
Probab=24.84 E-value=26 Score=25.25 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=19.6
Q ss_pred chhHHHHHhhhccccchhhhhcc
Q psy8289 13 PLARIWLAAHWDKKLTKAHVFET 35 (91)
Q Consensus 13 pLa~iWlAA~~~kkL~K~~i~~~ 35 (91)
.+..+|+|.-+|+++||++|++.
T Consensus 94 K~~E~~lA~~lE~~~sK~eILe~ 116 (209)
T 3hzs_A 94 KVKELFVAHRVEKQYNKNEILSF 116 (209)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHH
Confidence 56788999999999999998764
No 6
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=20.05 E-value=36 Score=25.44 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=19.7
Q ss_pred chhHHHHHhhhccccchhhhhcc
Q psy8289 13 PLARIWLAAHWDKKLTKAHVFET 35 (91)
Q Consensus 13 pLa~iWlAA~~~kkL~K~~i~~~ 35 (91)
-+..+|+|--+|+++||++|++.
T Consensus 147 K~~E~~lA~~lE~~~sK~eILe~ 169 (263)
T 3vmt_A 147 KVKELFVAHRVEKQYNKNEILSF 169 (263)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHH
Confidence 56788999999999999998864
No 7
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=17.20 E-value=30 Score=25.69 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=17.5
Q ss_pred eEeeecccCccccchHHHHHH
Q psy8289 54 ERLESRKVCPGGDNFEKHWFR 74 (91)
Q Consensus 54 vRIYsrK~~yL~~D~~~~~~r 74 (91)
+++|.|+| |+.|||++++..
T Consensus 73 ikLYvrrV-fI~d~~~~llP~ 92 (263)
T 1y6z_A 73 IRLYVKRV-FINDKFSESIPR 92 (263)
T ss_dssp EEEEETTE-EEESCGGGGSCG
T ss_pred eeEEEeee-EeecchhhhchH
Confidence 88999999 999999987754
No 8
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=13.60 E-value=1.3e+02 Score=22.00 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=25.3
Q ss_pred eEeeecccCccccchHHHHHHhhhcCCC--------CCCCCCCCCC
Q psy8289 54 ERLESRKVCPGGDNFEKHWFRIKVHPDW--------ESNPRPSTYR 91 (91)
Q Consensus 54 vRIYsrK~~yL~~D~~~~~~rik~~~~~--------~~~~~~~~~~ 91 (91)
+||=. +..+||..++.-|+..|.+ .++|.|+-||
T Consensus 108 iRII~----~~~~D~y~v~~~I~~~~~~~~~~~KDYIa~PK~nGYr 149 (255)
T 3l9d_A 108 LRIMV----QFVDDVNDVLELLRQRKDMKVIQERDYINNLKPSGYR 149 (255)
T ss_dssp EEEEE----SSTTHHHHHHHHHHTCSSSEEEEEEEESCC-CCCSCC
T ss_pred EEEEE----eCHHHHHHHHHHHHhcCCCceeeeeccccCCCCCCce
Confidence 55543 3679999999999988776 3778888886
No 9
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=13.40 E-value=36 Score=25.90 Aligned_cols=20 Identities=20% Similarity=0.021 Sum_probs=17.7
Q ss_pred eEeeecccCccccchHHHHHH
Q psy8289 54 ERLESRKVCPGGDNFEKHWFR 74 (91)
Q Consensus 54 vRIYsrK~~yL~~D~~~~~~r 74 (91)
+++|.|+| |+.|||++++..
T Consensus 69 ikLYvrrV-fI~D~~eeLlP~ 88 (303)
T 2gq0_A 69 LKLYVQRV-FIMDDAEQFMPN 88 (303)
T ss_dssp EEEEETTE-EEEEEEGGGSCG
T ss_pred eEEEEece-EeecchhhhchH
Confidence 89999999 999999987754
No 10
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=12.89 E-value=32 Score=25.60 Aligned_cols=20 Identities=25% Similarity=0.036 Sum_probs=17.3
Q ss_pred eEeeecccCccccchHHHHHH
Q psy8289 54 ERLESRKVCPGGDNFEKHWFR 74 (91)
Q Consensus 54 vRIYsrK~~yL~~D~~~~~~r 74 (91)
+++|.|+| |+.|||++++..
T Consensus 71 ikLYvrrV-fI~d~~~~llP~ 90 (260)
T 1usu_A 71 IKLYVRRV-FITDEAEDLIPE 90 (260)
T ss_dssp EEEEETTE-EEESCCTTSSCG
T ss_pred eEEEEeee-EeccchhhhchH
Confidence 88999999 999999987654
Done!