Query psy8289
Match_columns 91
No_of_seqs 106 out of 232
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 23:41:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8289.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8289hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ekga_ d.82.2.1 (A:) C-termin 45.3 0.5 3.6E-05 29.9 -3.1 20 4-23 52-71 (119)
2 d1ew4a_ d.82.2.1 (A:) CyaY {Es 45.0 0.54 3.9E-05 29.1 -2.9 20 4-23 47-66 (106)
3 d2fqla1 d.82.2.1 (A:61-172) C- 39.3 0.77 5.6E-05 28.7 -2.9 20 4-23 57-76 (112)
4 d2olua1 d.2.1.10 (A:68-292) Pe 21.9 15 0.0011 24.9 1.2 23 13-35 101-123 (225)
5 d2oqoa1 d.2.1.10 (A:57-243) Pe 19.6 18 0.0013 23.8 1.2 23 13-35 81-103 (187)
6 d1vqoi1 a.4.7.1 (I:71-140) Rib 17.5 31 0.0022 19.2 1.8 28 26-53 40-67 (70)
7 d1ib8a2 d.52.4.1 (A:1-90) Hypo 16.6 43 0.0031 19.3 2.3 38 53-90 41-80 (90)
8 d2be3a1 d.218.1.8 (A:1-203) Pu 15.3 56 0.0041 21.1 2.9 37 51-91 73-117 (203)
9 d2gycg1 a.4.7.1 (G:73-140) Rib 14.9 28 0.002 19.4 1.1 28 26-53 38-65 (68)
10 d1xbpg1 a.4.7.1 (G:72-143) Rib 13.2 32 0.0024 19.2 1.0 28 26-53 38-65 (72)
No 1
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.30 E-value=0.5 Score=29.88 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=16.4
Q ss_pred chhhhhccCchhHHHHHhhh
Q psy8289 4 AQFVLAKKGPLARIWLAAHW 23 (91)
Q Consensus 4 s~~lLskkgpLa~iWlAA~~ 23 (91)
++.+++|..|.-+||||+-.
T Consensus 52 ~~~VINkQ~p~~QIWlASp~ 71 (119)
T d1ekga_ 52 GTYVINKQTPNKQIWLSSPS 71 (119)
T ss_dssp CEEEEEEEGGGTEEEEEETT
T ss_pred cEEEEeCCCCceeEEEEcCC
Confidence 35577999999999999754
No 2
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=44.98 E-value=0.54 Score=29.10 Aligned_cols=20 Identities=25% Similarity=0.785 Sum_probs=16.3
Q ss_pred chhhhhccCchhHHHHHhhh
Q psy8289 4 AQFVLAKKGPLARIWLAAHW 23 (91)
Q Consensus 4 s~~lLskkgpLa~iWlAA~~ 23 (91)
++.+++|..|.-+||||+-.
T Consensus 47 ~~~VINkQ~p~~QIWlaSps 66 (106)
T d1ew4a_ 47 SKIIINRQEPLHQVWLATKQ 66 (106)
T ss_dssp CEEEEEEETTTTEEEEECSS
T ss_pred CEEEEeCCCccceeeEECCC
Confidence 34578899999999999753
No 3
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.34 E-value=0.77 Score=28.66 Aligned_cols=20 Identities=35% Similarity=0.737 Sum_probs=16.3
Q ss_pred chhhhhccCchhHHHHHhhh
Q psy8289 4 AQFVLAKKGPLARIWLAAHW 23 (91)
Q Consensus 4 s~~lLskkgpLa~iWlAA~~ 23 (91)
++.+++|..|.-+||||+-.
T Consensus 57 ~~~VINkQ~p~~QIWlaSp~ 76 (112)
T d2fqla1 57 GTYVINKQPPNKQIWLASPL 76 (112)
T ss_dssp EEEEEEECCSSSSEEEEETT
T ss_pred CEEEEeCCCchhheeEecCC
Confidence 34578899999999999853
No 4
>d2olua1 d.2.1.10 (A:68-292) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}
Probab=21.90 E-value=15 Score=24.94 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=20.0
Q ss_pred chhHHHHHhhhccccchhhhhcc
Q psy8289 13 PLARIWLAAHWDKKLTKAHVFET 35 (91)
Q Consensus 13 pLa~iWlAA~~~kkL~K~~i~~~ 35 (91)
.+..+|+|-.+|+++||.+|++.
T Consensus 101 K~~E~~~A~~lE~~~sK~eILe~ 123 (225)
T d2olua1 101 KAQEAYLSYRLEQEYSKDDIFQV 123 (225)
T ss_dssp THHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHH
Confidence 67788999999999999998764
No 5
>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a {Aquifex aeolicus [TaxId: 63363]}
Probab=19.64 E-value=18 Score=23.82 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=19.7
Q ss_pred chhHHHHHhhhccccchhhhhcc
Q psy8289 13 PLARIWLAAHWDKKLTKAHVFET 35 (91)
Q Consensus 13 pLa~iWlAA~~~kkL~K~~i~~~ 35 (91)
.+-.+|+|--+|+.++|.+|++.
T Consensus 81 K~~E~~~a~~lE~~~sK~eILe~ 103 (187)
T d2oqoa1 81 KIKEALLAIKIERTFDKKKIMEL 103 (187)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHH
Confidence 56788999999999999998764
No 6
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=17.55 E-value=31 Score=19.23 Aligned_cols=28 Identities=0% Similarity=0.058 Sum_probs=20.9
Q ss_pred ccchhhhhcccHHHHHHhhcCCCCccce
Q psy8289 26 KLTKAHVFETNIEKSVDGILQPKFNQVT 53 (91)
Q Consensus 26 kL~K~~i~~~dI~~s~~~I~~p~~plgv 53 (91)
+..+.++...|++.+|..|+-.-..||+
T Consensus 40 k~K~~dl~~~~l~~~~k~V~GTa~SmGi 67 (70)
T d1vqoi1 40 EQKHPDLLSYDLTNAAKEVVGTCTSLGV 67 (70)
T ss_dssp HHCTTTCCCSSHHHHHHHHTTTSTTTTE
T ss_pred HHHHHhcCCCCHHHHHHHHHhhhhcceE
Confidence 3445677788999999999866666665
No 7
>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=16.61 E-value=43 Score=19.31 Aligned_cols=38 Identities=16% Similarity=-0.006 Sum_probs=26.5
Q ss_pred eeEeeecccC-ccccchHHHHHHhhhcCCC-CCCCCCCCC
Q psy8289 53 TERLESRKVC-PGGDNFEKHWFRIKVHPDW-ESNPRPSTY 90 (91)
Q Consensus 53 vvRIYsrK~~-yL~~D~~~~~~rik~~~~~-~~~~~~~~~ 90 (91)
++|||-.+-+ --++||..+-..|...... +..+.|.-|
T Consensus 41 ~l~I~ID~~~gv~iddC~~vSr~is~~LD~~e~d~i~~~Y 80 (90)
T d1ib8a2 41 ILSIFVDKPEGITLNDTADLTEMISPVLDTIKPDPFPEQY 80 (90)
T ss_dssp EEEEEEECSSCCCHHHHHHHHHHHGGGTTTCCSCCCCSCE
T ss_pred EEEEEEECCCCcCHHHHHHHHHHHHHHhccccccCCCCCe
Confidence 4666654433 4579999999999988875 345666655
No 8
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=15.27 E-value=56 Score=21.11 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=26.4
Q ss_pred cceeEeeecccCccccchHHHHHHhhhcCCCC--------CCCCCCCCC
Q psy8289 51 QVTERLESRKVCPGGDNFEKHWFRIKVHPDWE--------SNPRPSTYR 91 (91)
Q Consensus 51 lgvvRIYsrK~~yL~~D~~~~~~rik~~~~~~--------~~~~~~~~~ 91 (91)
++=+||=. |..+||..+...|+..|... ++|.++-||
T Consensus 73 l~GvRIi~----~~~~D~~~v~~~l~~~f~~~~~~~~d~~~~pk~~GYr 117 (203)
T d2be3a1 73 IAGLRVMV----QFVDDVKEVVDILHKRQDMRIIQERDYITHRKASGYR 117 (203)
T ss_dssp SEEEEEEE----SCGGGHHHHHHHHHTCSSEEEEEEEETTTTCCTTSCC
T ss_pred heeEEEEE----ecHHHHHHHHHHHHhcCCceechhhhhhhhccCCccc
Confidence 33355533 67899999999999888753 556666665
No 9
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.85 E-value=28 Score=19.42 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=21.6
Q ss_pred ccchhhhhcccHHHHHHhhcCCCCccce
Q psy8289 26 KLTKAHVFETNIEKSVDGILQPKFNQVT 53 (91)
Q Consensus 26 kL~K~~i~~~dI~~s~~~I~~p~~plgv 53 (91)
+++..++...|++.+|..|+-.-..||+
T Consensus 38 k~K~~dl~~~~l~~a~k~V~GTArSMGI 65 (68)
T d2gycg1 38 QTKAADMTGADIEAMTRSIEGTARSMGL 65 (68)
T ss_dssp TTTTTTCCCSSSHHHHTTTTTSSCSSSC
T ss_pred HHHhcccCCCCHHHHHHHHHhhHhcceE
Confidence 5566678889999999999866666665
No 10
>d1xbpg1 a.4.7.1 (G:72-143) Ribosomal protein L11, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=13.18 E-value=32 Score=19.24 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=21.2
Q ss_pred ccchhhhhcccHHHHHHhhcCCCCccce
Q psy8289 26 KLTKAHVFETNIEKSVDGILQPKFNQVT 53 (91)
Q Consensus 26 kL~K~~i~~~dI~~s~~~I~~p~~plgv 53 (91)
++.+.++...|+..+|..|+-.-..||+
T Consensus 38 k~K~~dl~~~~l~~~~k~V~GTa~SmGi 65 (72)
T d1xbpg1 38 KTKMPDLNAGSVEAAANTVAGTARSMGV 65 (72)
T ss_pred HHHHHhcCCCCHHHHHHHHHhhheeceE
Confidence 5566778889999999999765555554
Done!