RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8289
         (91 letters)



>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
          Length = 106

 Score = 23.2 bits (50), Expect = 4.0
 Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 5/26 (19%)

Query: 4  AQFVLAKKGPLARIWLAA-----HWD 24
          ++ ++ ++ PL ++WLA      H+D
Sbjct: 47 SKIIINRQEPLHQVWLATKQGGYHFD 72


>d1moxa1 c.10.2.5 (A:1-162) EGF receptor extracellular domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 162

 Score = 23.3 bits (50), Expect = 4.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 56 LESRKVCPGGDN 67
          LE +KVC G  N
Sbjct: 1  LEEKKVCQGTSN 12


>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 254

 Score = 23.2 bits (50), Expect = 5.6
 Identities = 3/24 (12%), Positives = 7/24 (29%), Gaps = 1/24 (4%)

Query: 68  FEKHWFRIKVHPDWESNPRPSTYR 91
            +K  F +        +   +  R
Sbjct: 99  IDKRQFTVPFVCG-CRDLGEAARR 121


>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 119

 Score = 22.5 bits (48), Expect = 8.4
 Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 4  AQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVD 42
            +V+ K+ P  +IWL++      +    ++   +  V 
Sbjct: 52 GTYVINKQTPNKQIWLSS----PSSGPKRYDWTGKNWVY 86


>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit
           {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 537

 Score = 22.8 bits (48), Expect = 9.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 12  GPLARIWLAAHWDKKLTKAHV 32
           GPLA++ +A   + K  K  +
Sbjct: 372 GPLAQMLVAYGHNHKTIKPTI 392


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.451 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 380,233
Number of extensions: 14641
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 10
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (21.9 bits)