Query psy8293
Match_columns 124
No_of_seqs 187 out of 1024
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 23:47:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 8.6E-32 1.9E-36 191.8 12.4 105 14-119 2-106 (220)
2 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 1.2E-31 2.5E-36 188.8 12.0 100 17-117 1-100 (200)
3 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 5.7E-31 1.2E-35 183.7 12.3 103 15-117 1-104 (188)
4 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 5.2E-31 1.1E-35 185.8 11.7 100 17-117 1-100 (203)
5 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 6E-31 1.3E-35 186.5 11.7 100 17-117 1-100 (211)
6 cd04372 RhoGAP_chimaerin RhoGA 100.0 1E-30 2.2E-35 183.2 12.1 101 17-117 1-103 (194)
7 cd04407 RhoGAP_myosin_IXB RhoG 100.0 1.1E-30 2.4E-35 181.9 11.8 99 17-117 1-99 (186)
8 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 1.6E-30 3.5E-35 182.4 11.9 101 17-117 1-102 (196)
9 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 2.4E-30 5.3E-35 181.4 11.9 102 15-118 1-105 (195)
10 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 2.9E-30 6.3E-35 179.3 11.9 100 17-118 1-104 (182)
11 cd04406 RhoGAP_myosin_IXA RhoG 100.0 2.8E-30 6E-35 179.9 11.8 99 17-117 1-99 (186)
12 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 4.9E-30 1.1E-34 178.9 12.0 101 17-118 1-103 (187)
13 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 8.7E-30 1.9E-34 180.0 11.7 101 17-117 1-105 (207)
14 cd04390 RhoGAP_ARHGAP22_24_25 100.0 1.6E-29 3.5E-34 177.7 12.4 102 15-117 1-106 (199)
15 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 1.5E-29 3.3E-34 179.5 12.0 100 17-117 1-112 (213)
16 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 4.4E-29 9.5E-34 178.5 11.8 101 16-117 1-119 (225)
17 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 5.9E-29 1.3E-33 174.0 12.1 98 16-117 1-98 (192)
18 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 7.3E-29 1.6E-33 174.9 12.4 104 14-117 2-106 (203)
19 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 5.3E-29 1.2E-33 177.1 11.7 101 16-117 1-108 (216)
20 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 7.8E-29 1.7E-33 173.0 12.0 103 15-118 1-105 (189)
21 cd04377 RhoGAP_myosin_IX RhoGA 100.0 1.1E-28 2.4E-33 171.9 12.0 99 17-117 1-99 (186)
22 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 1.1E-28 2.3E-33 171.9 11.4 99 17-117 1-100 (185)
23 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 3.5E-28 7.5E-33 170.0 12.1 102 17-118 1-106 (192)
24 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 6E-28 1.3E-32 169.2 12.6 102 14-117 3-107 (195)
25 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 5.6E-28 1.2E-32 168.8 12.0 102 16-118 1-111 (190)
26 KOG2200|consensus 100.0 1.3E-28 2.8E-33 190.7 9.4 117 3-121 288-406 (674)
27 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 7.5E-28 1.6E-32 169.6 11.9 98 16-117 1-101 (202)
28 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 1.1E-27 2.4E-32 167.0 11.9 99 17-117 1-105 (187)
29 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 1.7E-27 3.7E-32 167.1 11.9 102 16-117 1-105 (196)
30 cd04399 RhoGAP_fRGD2 RhoGAP_fR 99.9 3.4E-27 7.3E-32 167.4 11.1 102 17-119 1-112 (212)
31 cd04382 RhoGAP_MgcRacGAP RhoGA 99.9 3.2E-27 6.9E-32 165.4 10.5 97 21-118 6-102 (193)
32 cd04388 RhoGAP_p85 RhoGAP_p85: 99.9 1.7E-26 3.6E-31 162.0 11.1 87 30-118 13-99 (200)
33 cd04385 RhoGAP_ARAP RhoGAP_ARA 99.9 5.3E-26 1.1E-30 158.2 12.0 99 18-117 2-101 (184)
34 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 99.9 5.6E-26 1.2E-30 160.5 11.4 88 29-117 6-93 (206)
35 cd04392 RhoGAP_ARHGAP19 RhoGAP 99.9 1.5E-24 3.2E-29 153.4 10.6 92 17-117 1-93 (208)
36 cd04380 RhoGAP_OCRL1 RhoGAP_OC 99.9 3.4E-24 7.4E-29 152.8 10.6 100 14-116 10-135 (220)
37 cd04374 RhoGAP_Graf RhoGAP_Gra 99.9 1.7E-23 3.6E-28 147.6 10.1 87 32-118 28-119 (203)
38 KOG4269|consensus 99.9 1.3E-23 2.8E-28 168.7 8.0 107 9-116 893-1006(1112)
39 smart00324 RhoGAP GTPase-activ 99.9 7E-22 1.5E-26 135.8 10.8 87 31-118 2-89 (174)
40 KOG2710|consensus 99.9 1.1E-21 2.5E-26 148.9 10.8 87 31-118 93-183 (412)
41 KOG1450|consensus 99.9 1.3E-21 2.9E-26 154.4 10.6 111 7-118 447-559 (650)
42 PF00620 RhoGAP: RhoGAP domain 99.9 2.7E-21 5.8E-26 129.9 9.8 86 33-118 1-86 (151)
43 cd00159 RhoGAP RhoGAP: GTPase- 99.8 1E-20 2.2E-25 128.8 10.4 85 33-118 1-85 (169)
44 KOG4407|consensus 99.8 2E-20 4.2E-25 154.7 7.7 106 14-119 1155-1265(1973)
45 KOG4270|consensus 99.8 2E-19 4.3E-24 141.5 8.1 102 14-117 144-250 (577)
46 KOG4406|consensus 99.8 2.7E-19 5.8E-24 134.9 6.6 102 13-116 250-355 (467)
47 KOG1453|consensus 99.8 7E-19 1.5E-23 145.9 8.9 103 15-118 601-703 (918)
48 KOG3564|consensus 99.8 2.1E-18 4.6E-23 131.8 9.8 97 21-118 351-447 (604)
49 KOG1452|consensus 99.7 1.8E-17 4E-22 121.7 7.0 111 3-116 174-286 (442)
50 KOG1117|consensus 99.6 3.3E-15 7.1E-20 120.7 8.4 90 29-118 724-814 (1186)
51 KOG4271|consensus 99.5 3.7E-15 7.9E-20 121.0 3.4 102 14-117 915-1017(1100)
52 KOG1451|consensus 99.5 2.6E-14 5.7E-19 111.9 6.9 87 34-120 390-480 (812)
53 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.2 1.4E-10 3.1E-15 81.4 8.2 85 33-117 7-103 (198)
54 cd04405 RhoGAP_BRCC3-like RhoG 99.1 1.1E-10 2.5E-15 83.1 6.5 104 15-118 20-138 (235)
55 KOG4724|consensus 99.1 1.6E-11 3.4E-16 97.4 2.3 101 14-118 80-180 (741)
56 KOG3565|consensus 98.4 3.4E-07 7.4E-12 74.1 3.6 88 29-118 215-305 (640)
57 KOG4370|consensus 98.3 1.3E-06 2.9E-11 67.0 5.4 105 14-118 49-196 (514)
58 PF08101 DUF1708: Domain of un 97.7 0.00016 3.6E-09 56.2 7.6 84 32-115 8-103 (420)
59 KOG4724|consensus 97.7 6.7E-05 1.5E-09 60.5 5.3 101 14-116 414-518 (741)
60 KOG1453|consensus 86.8 0.13 2.8E-06 44.1 -1.1 99 16-114 462-570 (918)
61 PF03471 CorC_HlyC: Transporte 74.0 3.7 8.1E-05 24.3 2.5 45 50-101 4-48 (81)
62 COG4835 Uncharacterized protei 64.6 6.1 0.00013 25.4 2.0 46 51-99 61-106 (124)
63 KOG4370|consensus 59.7 9.9 0.00022 30.1 2.8 35 82-116 117-151 (514)
64 COG2747 FlgM Negative regulato 57.0 30 0.00065 21.5 4.1 34 59-98 59-92 (93)
65 cd08048 TAF11 TATA Binding Pro 56.2 43 0.00094 20.3 5.2 51 59-114 18-83 (85)
66 PF00885 DMRL_synthase: 6,7-di 55.0 44 0.00095 22.3 5.0 40 34-73 20-61 (144)
67 TIGR00114 lumazine-synth 6,7-d 49.4 67 0.0014 21.4 5.2 40 34-73 17-58 (138)
68 KOG4271|consensus 45.1 16 0.00034 31.9 2.0 97 15-112 355-460 (1100)
69 PF11823 DUF3343: Protein of u 43.7 27 0.00058 20.2 2.3 24 33-56 49-72 (73)
70 KOG2015|consensus 43.2 37 0.0008 26.3 3.5 62 32-94 211-275 (422)
71 PF04316 FlgM: Anti-sigma-28 f 41.7 61 0.0013 17.8 4.0 28 59-92 26-53 (57)
72 COG1894 NuoF NADH:ubiquinone o 41.7 29 0.00062 27.4 2.8 57 4-61 196-255 (424)
73 TIGR03824 FlgM_jcvi flagellar 41.3 65 0.0014 19.7 3.9 28 59-92 64-91 (95)
74 COG2731 EbgC Beta-galactosidas 38.6 48 0.0011 22.5 3.2 30 30-59 13-44 (154)
75 PLN02404 6,7-dimethyl-8-ribity 37.4 1.3E+02 0.0027 20.2 5.1 41 33-73 23-65 (141)
76 PF09088 MIF4G_like: MIF4G lik 35.5 28 0.00061 24.5 1.8 39 8-46 83-121 (191)
77 KOG3242|consensus 34.6 1.5E+02 0.0032 20.9 5.1 87 31-120 101-193 (208)
78 PRK15094 magnesium/cobalt effl 34.3 61 0.0013 24.1 3.5 45 51-102 209-253 (292)
79 PRK06737 acetolactate synthase 34.2 1E+02 0.0022 18.2 4.3 42 32-73 12-67 (76)
80 PF11181 YflT: Heat induced st 34.0 1.2E+02 0.0025 18.7 4.5 56 36-97 12-67 (103)
81 PRK11573 hypothetical protein; 33.1 48 0.001 26.0 2.9 45 51-102 331-375 (413)
82 cd03735 SOCS_SOCS1 SOCS (suppr 28.1 58 0.0013 17.2 1.8 17 87-103 27-43 (43)
83 PF08491 SE: Squalene epoxidas 27.8 50 0.0011 24.7 2.1 34 88-121 81-114 (276)
84 KOG4270|consensus 27.6 53 0.0011 27.2 2.3 73 33-109 59-131 (577)
85 PF15643 Tox-PL-2: Papain fold 27.4 1.6E+02 0.0035 18.5 4.0 19 81-99 17-35 (100)
86 KOG0258|consensus 26.4 2E+02 0.0043 23.0 5.1 44 30-73 113-159 (475)
87 PF15063 TC1: Thyroid cancer p 26.3 80 0.0017 18.9 2.4 36 49-93 41-76 (79)
88 cd03734 SOCS_CIS1 SOCS (suppre 26.0 68 0.0015 16.7 1.8 15 88-102 26-40 (41)
89 cd03737 SOCS_SOCS3 SOCS (suppr 25.6 57 0.0012 17.1 1.5 12 92-103 31-42 (42)
90 cd03736 SOCS_SOCS2 SOCS (suppr 24.8 74 0.0016 16.5 1.9 16 87-102 25-40 (41)
91 KOG1449|consensus 24.7 22 0.00048 29.4 -0.3 78 14-104 207-293 (670)
92 COG2901 Fis Factor for inversi 24.4 1.6E+02 0.0036 18.2 3.5 30 86-116 29-58 (98)
93 PRK12419 riboflavin synthase s 24.4 2.4E+02 0.0052 19.3 5.0 41 33-73 26-68 (158)
94 PRK10810 anti-sigma28 factor F 23.9 1.8E+02 0.0039 18.3 3.8 28 59-92 60-87 (98)
95 PF08400 phage_tail_N: Prophag 23.8 77 0.0017 21.1 2.2 31 88-118 82-112 (134)
96 PF13113 DUF3970: Protein of u 23.7 87 0.0019 17.8 2.1 19 54-72 4-22 (60)
97 cd00068 GGL G protein gamma su 23.6 1.4E+02 0.0031 16.4 4.6 38 61-106 6-45 (57)
98 PF06969 HemN_C: HemN C-termin 23.4 1.3E+02 0.0029 16.5 3.0 33 16-48 18-50 (66)
99 PF10662 PduV-EutP: Ethanolami 23.3 1.5E+02 0.0033 19.8 3.6 37 33-71 105-142 (143)
100 PF00631 G-gamma: GGL domain; 21.6 89 0.0019 17.8 2.0 38 62-107 10-47 (68)
101 PF09179 TilS: TilS substrate 21.6 1.6E+02 0.0034 16.2 3.4 36 81-116 7-42 (69)
102 PRK00061 ribH 6,7-dimethyl-8-r 21.2 2.7E+02 0.0059 18.8 5.1 41 33-73 28-70 (154)
103 COG1459 PulF Type II secretory 21.0 87 0.0019 24.6 2.4 55 18-72 107-161 (397)
104 COG3189 Uncharacterized conser 21.0 1.5E+02 0.0033 19.2 3.0 36 61-98 79-116 (117)
105 PF14278 TetR_C_8: Transcripti 20.7 79 0.0017 17.5 1.7 38 34-71 2-39 (77)
106 PF04282 DUF438: Family of unk 20.6 72 0.0016 18.7 1.4 27 92-118 2-28 (71)
107 TIGR03642 cas_csx13 CRISPR-ass 20.4 2.3E+02 0.005 18.5 3.9 28 33-60 4-31 (124)
108 PF02084 Bindin: Bindin; Inte 20.2 3.6E+02 0.0077 19.7 5.6 57 59-118 102-162 (238)
109 PF04208 MtrA: Tetrahydrometha 20.2 3.1E+02 0.0068 19.1 5.4 70 34-103 81-155 (176)
110 KOG3870|consensus 20.2 1.2E+02 0.0026 24.1 2.9 74 30-106 31-110 (434)
No 1
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.98 E-value=8.6e-32 Score=191.80 Aligned_cols=105 Identities=62% Similarity=0.981 Sum_probs=97.7
Q ss_pred CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q psy8293 14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVK 93 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK 93 (124)
+++||+||+.++++.|..||.+|..|++||+.+|+++|||||++|+..++++|++.+|.+....+ ++..++|+||++||
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~-~~~~~~~~va~lLK 80 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVN-YDGQQAYDVADMLK 80 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccC-cccccHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998755555 67789999999999
Q ss_pred HHHhhCCCCCCChHHHHHHHHHhccc
Q psy8293 94 QYFRELPEVLLTNKSSETFMSIFQPI 119 (124)
Q Consensus 94 ~flr~Lp~PLl~~~~~~~~~~~~~~~ 119 (124)
.|||+||+||+|.++|+.|+++++..
T Consensus 81 ~flReLPePLlt~~l~~~fi~~~~~~ 106 (220)
T cd04375 81 QYFRDLPEPLLTNKLSETFIAIFQYV 106 (220)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcC
Confidence 99999999999999999999987644
No 2
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=1.2e-31 Score=188.78 Aligned_cols=100 Identities=23% Similarity=0.382 Sum_probs=94.4
Q ss_pred cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8293 17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYF 96 (124)
Q Consensus 17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fl 96 (124)
||++|+.++++++..||.+|.+|++||+++|+++|||||++|+.++++++++.+|++...++ +...++|+||++||.||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~-~~~~~~h~va~lLK~fL 79 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVD-LSGHSPHDITSVLKHFL 79 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccC-cccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998855556 66789999999999999
Q ss_pred hhCCCCCCChHHHHHHHHHhc
Q psy8293 97 RELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 97 r~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|+||+||+|.++|+.|+++++
T Consensus 80 ReLPePLi~~~~y~~~~~~~~ 100 (200)
T cd04408 80 KELPEPVLPFQLYDDFIALAK 100 (200)
T ss_pred HhCCCccCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 3
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=99.97 E-value=5.7e-31 Score=183.69 Aligned_cols=103 Identities=24% Similarity=0.397 Sum_probs=93.9
Q ss_pred cccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCC-CCCCCCHHHHHHHHH
Q psy8293 15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLD-EVDSQQAYDVADLVK 93 (124)
Q Consensus 15 ~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~-~~~~~~~~~va~~lK 93 (124)
++||++|+++++.++..||.++.+|++||+++|+++|||||++|+.++++++++.+|+|..... ..+..|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999998843321 134679999999999
Q ss_pred HHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 94 QYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 94 ~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
.|||+||+||+|.+.|+.|+++++
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~~ 104 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCVK 104 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHh
Confidence 999999999999999999998864
No 4
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=99.97 E-value=5.2e-31 Score=185.82 Aligned_cols=100 Identities=23% Similarity=0.352 Sum_probs=94.3
Q ss_pred cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8293 17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYF 96 (124)
Q Consensus 17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fl 96 (124)
||+||+.++++++..||.+|.+|+++|+++|+++|||||++|+..+++++++.+|++...++ +...++|+||++||.||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~-~~~~~~h~va~~LK~fL 79 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVE-LSELSPHDISSVLKLFL 79 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccc-cccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998855555 66789999999999999
Q ss_pred hhCCCCCCChHHHHHHHHHhc
Q psy8293 97 RELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 97 r~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|+||+||+|.++|+.|+++++
T Consensus 80 ReLpePlip~~~y~~~~~~~~ 100 (203)
T cd04378 80 RQLPEPLILFRLYNDFIALAK 100 (203)
T ss_pred HhCCCccCCHHHHHHHHHHHH
Confidence 999999999999999998875
No 5
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=6e-31 Score=186.47 Aligned_cols=100 Identities=23% Similarity=0.369 Sum_probs=93.8
Q ss_pred cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8293 17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYF 96 (124)
Q Consensus 17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fl 96 (124)
||+||++++++++..||.+|.+|+++|+++|+++|||||++|+..+++++++.+|++...++ ++..|+|+||++||.||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~-~~~~~~h~va~~LK~fL 79 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVE-LSELSPHDISNVLKLYL 79 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccc-cccCCHHHHHHHHHHHH
Confidence 99999999999988999999999999999999999999999999999999999998854455 56789999999999999
Q ss_pred hhCCCCCCChHHHHHHHHHhc
Q psy8293 97 RELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 97 r~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|+||+||+|.++|+.|+++++
T Consensus 80 ReLPePLi~~~~~~~~~~~~~ 100 (211)
T cd04409 80 RQLPEPLILFRLYNEFIGLAK 100 (211)
T ss_pred HhCCCcccCHHHHHHHHHHHH
Confidence 999999999999999998874
No 6
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=99.97 E-value=1e-30 Score=183.19 Aligned_cols=101 Identities=18% Similarity=0.271 Sum_probs=92.0
Q ss_pred cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCC--CCCCCHHHHHHHHHH
Q psy8293 17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE--VDSQQAYDVADLVKQ 94 (124)
Q Consensus 17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~--~~~~~~~~va~~lK~ 94 (124)
||+||++++++++..||.++.+|++||+++|+++|||||++|+.++++++++.+|++....++ ....|+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 999999999999989999999999999999999999999999999999999999976454541 123489999999999
Q ss_pred HHhhCCCCCCChHHHHHHHHHhc
Q psy8293 95 YFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 95 flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|||+||+||+|.+.|+.|+++.+
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~ 103 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAK 103 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHh
Confidence 99999999999999999999875
No 7
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=99.97 E-value=1.1e-30 Score=181.95 Aligned_cols=99 Identities=23% Similarity=0.379 Sum_probs=91.7
Q ss_pred cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8293 17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYF 96 (124)
Q Consensus 17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fl 96 (124)
||+||+.++. ++..||.++..|++||+++|+++|||||++|+..+++++++.+|.+...++ +...|+|+||++||.||
T Consensus 1 FGv~L~~~~~-~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~-~~~~d~h~va~lLK~fl 78 (186)
T cd04407 1 FGVRVGSLTS-NKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVK-LENYPIHAITGLLKQWL 78 (186)
T ss_pred CCCcHHHHHh-CCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccC-cccCCHHHHHHHHHHHH
Confidence 9999999875 577899999999999999999999999999999999999999998865666 66789999999999999
Q ss_pred hhCCCCCCChHHHHHHHHHhc
Q psy8293 97 RELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 97 r~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|+||+||+|+++|+.|+++.+
T Consensus 79 ReLPepLi~~~~~~~~~~~~~ 99 (186)
T cd04407 79 RELPEPLMTFAQYNDFLRAVE 99 (186)
T ss_pred HhCCCccCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 8
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=99.97 E-value=1.6e-30 Score=182.41 Aligned_cols=101 Identities=27% Similarity=0.425 Sum_probs=92.6
Q ss_pred cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCC-CCCCCCHHHHHHHHHHH
Q psy8293 17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLD-EVDSQQAYDVADLVKQY 95 (124)
Q Consensus 17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~-~~~~~~~~~va~~lK~f 95 (124)
||+||+.++++++..||.++.+|++||+++|+++|||||++|+..+++++++.+|++..... ..+..|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998743321 24578999999999999
Q ss_pred HhhCCCCCCChHHHHHHHHHhc
Q psy8293 96 FRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 96 lr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
||+||+||+|+++|+.|++++.
T Consensus 81 LReLPePLip~~~y~~~~~~~~ 102 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGIA 102 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 9
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=2.4e-30 Score=181.41 Aligned_cols=102 Identities=32% Similarity=0.468 Sum_probs=92.3
Q ss_pred cccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC---CCCCHHHHHHH
Q psy8293 15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV---DSQQAYDVADL 91 (124)
Q Consensus 15 ~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~---~~~~~~~va~~ 91 (124)
++||++|++++++.+..||.++..|++||+++|+ +|||||++|+.++++++++.+|++. ..++. ...|+|+||++
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~-~~~~~~~~~~~d~h~va~l 78 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQ-IPDLTKDVYIQDIHSVSSL 78 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCC-CCCcccccccccHHHHHHH
Confidence 5899999999999999999999999999999998 6999999999999999999999883 33311 24599999999
Q ss_pred HHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 92 VKQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 92 lK~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
||.|||+||+||+|.++|+.|+++++.
T Consensus 79 LK~flReLPePLi~~~~y~~~~~~~~~ 105 (195)
T cd04384 79 CKLYFRELPNPLLTYQLYEKFSEAVSA 105 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhc
Confidence 999999999999999999999998764
No 10
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=99.97 E-value=2.9e-30 Score=179.33 Aligned_cols=100 Identities=26% Similarity=0.485 Sum_probs=92.3
Q ss_pred cccchHHHHhhh----CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q psy8293 17 FGVPLLVNIQKT----GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLV 92 (124)
Q Consensus 17 FG~~L~~~~~~~----~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~l 92 (124)
||+||++++++. |..||.++..|++||+++|+++|||||++|+..+++++++.+|++ ..++ ++..|+|+||++|
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~-~~~~-~~~~d~h~va~lL 78 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRR-ESPN-LEEYEPPTVASLL 78 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCC-CCCC-ccccChHHHHHHH
Confidence 999999999885 457999999999999999999999999999999999999999988 4566 6678999999999
Q ss_pred HHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 93 KQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 93 K~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
|.|||+||+||+|.++|+.|.++++.
T Consensus 79 K~fLReLP~pLi~~~~~~~~~~~~~~ 104 (182)
T cd04381 79 KQYLRELPEPLLTKELMPRFEEACGR 104 (182)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHcCC
Confidence 99999999999999999999988753
No 11
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=99.97 E-value=2.8e-30 Score=179.93 Aligned_cols=99 Identities=25% Similarity=0.404 Sum_probs=91.0
Q ss_pred cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8293 17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYF 96 (124)
Q Consensus 17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fl 96 (124)
||++|+.++.. +..||.++.+|++||+++|+++|||||++|+.++++++++.+|.+...++ ++..|+|+||++||.||
T Consensus 1 FGv~L~~l~~~-~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~-~~~~d~h~va~lLK~fL 78 (186)
T cd04406 1 FGVELSRLTSE-DRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVN-LDDYNIHVIASVFKQWL 78 (186)
T ss_pred CCCchHHHHHC-CCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCC-cccCCHHHHHHHHHHHH
Confidence 99999988765 56799999999999999999999999999999999999999998754555 66789999999999999
Q ss_pred hhCCCCCCChHHHHHHHHHhc
Q psy8293 97 RELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 97 r~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|+||+||+|.++|+.|+++++
T Consensus 79 ReLPePLi~~~~y~~~~~~~~ 99 (186)
T cd04406 79 RDLPNPLMTFELYEEFLRAMG 99 (186)
T ss_pred HhCCCccCCHHHHHHHHHHHh
Confidence 999999999999999998864
No 12
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=4.9e-30 Score=178.86 Aligned_cols=101 Identities=31% Similarity=0.400 Sum_probs=92.2
Q ss_pred cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCC--CCCCCCHHHHHHHHHH
Q psy8293 17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLD--EVDSQQAYDVADLVKQ 94 (124)
Q Consensus 17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~--~~~~~~~~~va~~lK~ 94 (124)
||+||++++++++..||.++..|++||+++|+++|||||++|+.+.+++++..+|.+ ..++ .....|+|+||++||.
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~-~~~~~~~~~~~d~h~va~lLK~ 79 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHD-EKLDLDDSKWEDIHVITGALKL 79 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCC-CCCCccccccccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 3333 1234589999999999
Q ss_pred HHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 95 YFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 95 flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
|||+||+||+|++.|+.|+++.+.
T Consensus 80 fLReLPepLi~~~~~~~~~~~~~~ 103 (187)
T cd04403 80 FFRELPEPLFPYSLFNDFVAAIKL 103 (187)
T ss_pred HHhcCCCCcCCHHHHHHHHHHHHC
Confidence 999999999999999999988753
No 13
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=8.7e-30 Score=179.97 Aligned_cols=101 Identities=23% Similarity=0.403 Sum_probs=90.0
Q ss_pred cccchHHHHhhh--CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCC-CC-CCCHHHHHHHH
Q psy8293 17 FGVPLLVNIQKT--GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE-VD-SQQAYDVADLV 92 (124)
Q Consensus 17 FG~~L~~~~~~~--~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~-~~-~~~~~~va~~l 92 (124)
||+||+++++++ +..||.+|++|++||+++|+++|||||++|+.+++++|++.+|++....++ .+ ..|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 999999999985 467999999999999999999999999999999999999999987443431 12 24899999999
Q ss_pred HHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 93 KQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 93 K~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|.|||+||+||+|.++|+.|+++++
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~ 105 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALA 105 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHh
Confidence 9999999999999999999998864
No 14
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=99.96 E-value=1.6e-29 Score=177.75 Aligned_cols=102 Identities=25% Similarity=0.389 Sum_probs=90.9
Q ss_pred cccccchHHHHhhhC----CCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHH
Q psy8293 15 SVFGVPLLVNIQKTG----YALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVAD 90 (124)
Q Consensus 15 ~vFG~~L~~~~~~~~----~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~ 90 (124)
++||+||++++..++ ..||.++..|++||+++|+++|||||++|+...++++++.+|++ ...++....|+|+||+
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~-~~~~~~~~~d~h~va~ 79 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAG-ERPSFDSDTDVHTVAS 79 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCC-CCCCccccCCHHHHHH
Confidence 589999999987653 45999999999999999999999999999999999999999988 3344224679999999
Q ss_pred HHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 91 LVKQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 91 ~lK~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
+||.|||+||+||+|.+.|+.|+++.+
T Consensus 80 lLK~fLReLPePLi~~~~y~~~~~~~~ 106 (199)
T cd04390 80 LLKLYLRELPEPVIPWAQYEDFLSCAQ 106 (199)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence 999999999999999999999998764
No 15
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=1.5e-29 Score=179.53 Aligned_cols=100 Identities=31% Similarity=0.470 Sum_probs=91.6
Q ss_pred cccchHHHHhhhCC-----------CCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCC-CCCCCCCC
Q psy8293 17 FGVPLLVNIQKTGY-----------ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFK-LDEVDSQQ 84 (124)
Q Consensus 17 FG~~L~~~~~~~~~-----------~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~-~~~~~~~~ 84 (124)
||+||+.+++++|. .||.++..|++||+++|+++|||||++|+..+++++++.+|.+... ++ +...+
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d-~~~~~ 79 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPD-LSKEN 79 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccc-cccCc
Confidence 99999999999865 5999999999999999999999999999999999999999987433 35 55679
Q ss_pred HHHHHHHHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 85 AYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 85 ~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
+|+||++||.|||+||+||+|.++|+.|+++.+
T Consensus 80 ~~~va~lLK~flReLPepLi~~~~y~~~i~~~~ 112 (213)
T cd04397 80 PVQLAALLKKFLRELPDPLLTFKLYRLWISSQK 112 (213)
T ss_pred HHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHc
Confidence 999999999999999999999999999998764
No 16
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=4.4e-29 Score=178.45 Aligned_cols=101 Identities=28% Similarity=0.418 Sum_probs=91.1
Q ss_pred ccccchHHHHhhhC---------------CCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCC---CCC
Q psy8293 16 VFGVPLLVNIQKTG---------------YALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD---FKL 77 (124)
Q Consensus 16 vFG~~L~~~~~~~~---------------~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~---~~~ 77 (124)
||||+|++.++..+ ..||.+|.+|++||+++|+++|||||++|+..+++++++.+|++. ..+
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 79999999888764 258999999999999999999999999999999999999999763 345
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 78 DEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 78 ~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
+ ++.+++|+||++||.|||+||+||+|.++|+.|.+++.
T Consensus 81 ~-~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~ 119 (225)
T cd04396 81 D-WDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLR 119 (225)
T ss_pred C-ccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHH
Confidence 5 56789999999999999999999999999999988764
No 17
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=5.9e-29 Score=174.04 Aligned_cols=98 Identities=26% Similarity=0.457 Sum_probs=91.9
Q ss_pred ccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHH
Q psy8293 16 VFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQY 95 (124)
Q Consensus 16 vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~f 95 (124)
+||+||+..++ +..||.++..|++||+++|+++|||||++|+.++++++++.+|++ ..++ ++..|+|++|+++|.|
T Consensus 1 ~FG~~L~~~~~--~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~-~~~~-~~~~~~~~va~~lK~f 76 (192)
T cd04402 1 LFGQPLSNICE--DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSG-VEVD-LKAEPVLLLASVLKDF 76 (192)
T ss_pred CCCCcHHHHhC--CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCC-CCCC-CccCCHHHHHHHHHHH
Confidence 69999999988 667999999999999999999999999999999999999999988 5566 6788999999999999
Q ss_pred HhhCCCCCCChHHHHHHHHHhc
Q psy8293 96 FRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 96 lr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
||+||+||+|.+.|+.|+++++
T Consensus 77 lreLpepLi~~~~~~~~~~~~~ 98 (192)
T cd04402 77 LRNIPGSLLSSDLYEEWMSALD 98 (192)
T ss_pred HHhCCCccCCHHHHHHHHHHHc
Confidence 9999999999999999998875
No 18
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=7.3e-29 Score=174.90 Aligned_cols=104 Identities=28% Similarity=0.436 Sum_probs=94.3
Q ss_pred CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHH
Q psy8293 14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE-VDSQQAYDVADLV 92 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~-~~~~~~~~va~~l 92 (124)
+++||+||++.+++++..||.++..|+.||+++|+++|||||++|+...++++++.+|.+....+. ....|+|+||++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 589999999999999889999999999999999999999999999999999999999988433321 2345899999999
Q ss_pred HHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 93 KQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 93 K~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|.|||+||+||+|.++|+.|+++++
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~~ 106 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAAN 106 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHc
Confidence 9999999999999999999998864
No 19
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=5.3e-29 Score=177.08 Aligned_cols=101 Identities=29% Similarity=0.398 Sum_probs=91.2
Q ss_pred ccccchHHHHhhh-----CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCC--CCCCCCCCCCHHHH
Q psy8293 16 VFGVPLLVNIQKT-----GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD--FKLDEVDSQQAYDV 88 (124)
Q Consensus 16 vFG~~L~~~~~~~-----~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~--~~~~~~~~~~~~~v 88 (124)
|||+||+++++++ +..||.++..|+++|+++|+++|||||++|+.++++++++.+|.+. ..++ ++..|+|+|
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~-~~~~~~h~v 79 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFL-WDQVKQHDA 79 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccc-cccCCHHHH
Confidence 7999999999985 3579999999999999999999999999999999999999999752 2344 667899999
Q ss_pred HHHHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 89 ADLVKQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 89 a~~lK~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|++||.|||+||+||+|.++|+.|.++.+
T Consensus 80 a~lLK~flReLPePLi~~~~~~~~~~~~~ 108 (216)
T cd04391 80 ASLLKLFIRELPQPLLTVEYLPAFYSVQG 108 (216)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHc
Confidence 99999999999999999999999988653
No 20
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=99.96 E-value=7.8e-29 Score=173.03 Aligned_cols=103 Identities=27% Similarity=0.420 Sum_probs=92.9
Q ss_pred cccccchHHHHhhh--CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q psy8293 15 SVFGVPLLVNIQKT--GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLV 92 (124)
Q Consensus 15 ~vFG~~L~~~~~~~--~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~l 92 (124)
++||+||++++++. +..||.++..|++||+++|+++|||||++|+...++++++.+|.+ ..+++....|+|++|+++
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~-~~~~~~~~~d~~~va~~l 79 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSG-EEVDLSKEADVCSAASLL 79 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCC-CCCCccccCCHHHHHHHH
Confidence 58999999998864 457999999999999999999999999999999999999999988 455523457999999999
Q ss_pred HHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 93 KQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 93 K~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
|.|||+||+||+|.+.|+.|+++++.
T Consensus 80 K~flr~Lp~pLi~~~~~~~l~~~~~~ 105 (189)
T cd04393 80 RLFLQELPEGLIPASLQIRLMQLYQD 105 (189)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999988754
No 21
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=99.96 E-value=1.1e-28 Score=171.87 Aligned_cols=99 Identities=26% Similarity=0.410 Sum_probs=91.7
Q ss_pred cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8293 17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYF 96 (124)
Q Consensus 17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fl 96 (124)
||+||+.++.. +..||.++..|++||+++|+++|||||++|+..+++++++.+|++...++ ++..|+|+||++||.||
T Consensus 1 FG~~L~~~~~~-~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~-~~~~~~~~va~~LK~fl 78 (186)
T cd04377 1 FGVSLSSLTSE-DRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVN-LEDYPIHVITSVLKQWL 78 (186)
T ss_pred CCCCHHHHHhC-CCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccC-cccCCHHHHHHHHHHHH
Confidence 99999988764 67899999999999999999999999999999999999999998855666 67789999999999999
Q ss_pred hhCCCCCCChHHHHHHHHHhc
Q psy8293 97 RELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 97 r~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|+||+||+|++.|+.|+++++
T Consensus 79 r~LpepLi~~~~~~~~~~~~~ 99 (186)
T cd04377 79 RELPEPLMTFELYENFLRAME 99 (186)
T ss_pred HcCCCccCCHHHHHHHHHHHh
Confidence 999999999999999998764
No 22
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=1.1e-28 Score=171.89 Aligned_cols=99 Identities=26% Similarity=0.441 Sum_probs=90.0
Q ss_pred cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHH
Q psy8293 17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE-VDSQQAYDVADLVKQY 95 (124)
Q Consensus 17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~-~~~~~~~~va~~lK~f 95 (124)
||+||++++. .+..||.++..|++||+++|+++|||||++|+..+++++++.+|++ ...++ ..+.|+|+||+++|.|
T Consensus 1 FG~pL~~~~~-~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~-~~~~~~~~~~~~~~va~~lK~f 78 (185)
T cd04373 1 FGVPLANVVT-SEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQD-HNLDLVSKDFTVNAVAGALKSF 78 (185)
T ss_pred CCCchHHHHh-CCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcC-CCCCcccccCcHHHHHHHHHHH
Confidence 9999999888 4778999999999999999999999999999999999999999987 34442 2456899999999999
Q ss_pred HhhCCCCCCChHHHHHHHHHhc
Q psy8293 96 FRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 96 lr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
||+||+||+|+++|+.|.+++.
T Consensus 79 LreLPePlip~~~~~~~~~~~~ 100 (185)
T cd04373 79 FSELPDPLIPYSMHLELVEAAK 100 (185)
T ss_pred HhcCCchhccHHHHHHHHHHHh
Confidence 9999999999999999998865
No 23
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=3.5e-28 Score=170.02 Aligned_cols=102 Identities=32% Similarity=0.483 Sum_probs=92.4
Q ss_pred cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC----CCCCHHHHHHHH
Q psy8293 17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV----DSQQAYDVADLV 92 (124)
Q Consensus 17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~----~~~~~~~va~~l 92 (124)
||+||++++++++..||.++..|+++|+++|+++|||||++|+...++++++.+|++....+.. ...|+|+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 8999999999999899999999999999999999999999999999999999999875433311 245899999999
Q ss_pred HHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 93 KQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 93 K~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
|.|||+||+||+|.+.|+.|+++.+.
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~~ 106 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAKI 106 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhC
Confidence 99999999999999999999988653
No 24
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=6e-28 Score=169.25 Aligned_cols=102 Identities=25% Similarity=0.360 Sum_probs=92.5
Q ss_pred CcccccchHHHHhhhC--CCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCC-CHHHHHH
Q psy8293 14 NSVFGVPLLVNIQKTG--YALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQ-QAYDVAD 90 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~--~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~-~~~~va~ 90 (124)
.++||+||+.++++.+ ..||.+|..|++||+++|+++|||||++|+.+.++++++.+|++ ..++ +... |+|+||+
T Consensus 3 ~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~-~~~~-~~~~~d~~~va~ 80 (195)
T cd04404 3 TQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMG-EPVD-FDQYEDVHLPAV 80 (195)
T ss_pred CCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCC-CCCC-cccccCHHHHHH
Confidence 5799999999988764 67999999999999999999999999999999999999999987 4455 4454 9999999
Q ss_pred HHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 91 LVKQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 91 ~lK~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
+||.|||+||+||+|.+.|+.+.++.+
T Consensus 81 ~LK~~lr~Lp~pLi~~~~~~~l~~~~~ 107 (195)
T cd04404 81 ILKTFLRELPEPLLTFDLYDDIVGFLN 107 (195)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHc
Confidence 999999999999999999999987653
No 25
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.95 E-value=5.6e-28 Score=168.85 Aligned_cols=102 Identities=29% Similarity=0.502 Sum_probs=90.2
Q ss_pred ccccchHHHHhhh-----CCCCcHHHHHHHHHHHhcC-CCccCeeecCCChHHHHHHHHHHhcCCCCCCCC---CCCCHH
Q psy8293 16 VFGVPLLVNIQKT-----GYALPKFIISSFEWLINNA-SDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV---DSQQAY 86 (124)
Q Consensus 16 vFG~~L~~~~~~~-----~~~vP~~l~~~~~~l~~~g-l~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~---~~~~~~ 86 (124)
+||+||+++++.+ +..||.+|.+|++||+++| +.+|||||++|+...++++++.+|++ ..++.. ...|+|
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~-~~~~~~~~~~~~d~h 79 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTE-YDVDLFSSSLYPDVH 79 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCC-CCCCccccccccCHH
Confidence 7999999999875 3579999999999999986 89999999999999999999999987 344422 356899
Q ss_pred HHHHHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 87 DVADLVKQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 87 ~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
+||+++|.|||+||+||+|.++|+.|.++.+.
T Consensus 80 ~va~lLK~flreLP~PLi~~~~~~~~~~~~~~ 111 (190)
T cd04400 80 TVAGLLKLYLRELPTLILGGELHNDFKRLVEE 111 (190)
T ss_pred HHHHHHHHHHHhCCcccCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999987753
No 26
>KOG2200|consensus
Probab=99.95 E-value=1.3e-28 Score=190.67 Aligned_cols=117 Identities=46% Similarity=0.694 Sum_probs=109.4
Q ss_pred CCCCCCCCCCCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCC--CCCC
Q psy8293 3 KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFK--LDEV 80 (124)
Q Consensus 3 ~~~k~~~~~~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~--~~~~ 80 (124)
+|+|.++.++ +.||||||..++++.|.++|.+|.+.+.||+++|++++||||++|.+++|++|++.++..... +. |
T Consensus 288 kr~kk~d~kd-~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~-~ 365 (674)
T KOG2200|consen 288 KRAKKVDGKD-GGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFN-W 365 (674)
T ss_pred hcccCCccCC-CceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccc-c
Confidence 6889999999 999999999999999999999999999999999999999999999999999999999865333 66 8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHhccccc
Q psy8293 81 DSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPIYM 121 (124)
Q Consensus 81 ~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~~~~ 121 (124)
+....|+||++||.|||+||+||+|.++.++|+++++-+|.
T Consensus 366 d~~~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pk 406 (674)
T KOG2200|consen 366 DSQSAHDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPK 406 (674)
T ss_pred chhhhhHHHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcH
Confidence 88899999999999999999999999999999999987763
No 27
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.95 E-value=7.5e-28 Score=169.64 Aligned_cols=98 Identities=34% Similarity=0.534 Sum_probs=87.5
Q ss_pred ccccchHHHHhh---hCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q psy8293 16 VFGVPLLVNIQK---TGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLV 92 (124)
Q Consensus 16 vFG~~L~~~~~~---~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~l 92 (124)
+||+||++++.. ++..||.++..|++||++ ++++|||||++|+.++++++++.+|++.. . ....++|+||++|
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~-~--~~~~~~~~vaslL 76 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEA-C--LSSALPCDVAGLL 76 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCC-C--ccccCHHHHHHHH
Confidence 799999998865 356799999999999987 59999999999999999999999998843 2 2456899999999
Q ss_pred HHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 93 KQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 93 K~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|.|||+||+||+|.++|+.|+++.+
T Consensus 77 K~flReLPePLi~~~~~~~~~~~~~ 101 (202)
T cd04394 77 KQFFRELPEPLLPYDLHEALLKAQE 101 (202)
T ss_pred HHHHhcCCCcCCCHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 28
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.95 E-value=1.1e-27 Score=166.99 Aligned_cols=99 Identities=24% Similarity=0.312 Sum_probs=88.0
Q ss_pred cccchHHHHhhhC-----CCCcHHHHHHHHHHHh-cCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHH
Q psy8293 17 FGVPLLVNIQKTG-----YALPKFIISSFEWLIN-NASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVAD 90 (124)
Q Consensus 17 FG~~L~~~~~~~~-----~~vP~~l~~~~~~l~~-~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~ 90 (124)
||+||++++++++ ..||.++..|++++.+ +|+.+|||||++|+...++++++.+|++. .+.....|+|+||+
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~--~~~~~~~d~h~va~ 78 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWD--YPLSGLEDPHVPAS 78 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCC--CCccccCCHHHHHH
Confidence 9999999997763 4699999999999865 79999999999999999999999999873 23234569999999
Q ss_pred HHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 91 LVKQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 91 ~lK~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
+||.|||+||+||+|.+.|+.++++.+
T Consensus 79 lLK~fLReLpePli~~~~~~~~i~~~~ 105 (187)
T cd04389 79 LLKLWLRELEEPLIPDALYQQCISASE 105 (187)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhc
Confidence 999999999999999999999998754
No 29
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.95 E-value=1.7e-27 Score=167.11 Aligned_cols=102 Identities=27% Similarity=0.429 Sum_probs=90.4
Q ss_pred ccccchHHHHhhh-CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC--CCCCHHHHHHHH
Q psy8293 16 VFGVPLLVNIQKT-GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV--DSQQAYDVADLV 92 (124)
Q Consensus 16 vFG~~L~~~~~~~-~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~--~~~~~~~va~~l 92 (124)
+||+||++..... +..||.+++.|+++|+++|+++|||||++|+..+++++++.+|++...++.. +..|+|++|++|
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll 80 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL 80 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence 5999999887754 4679999999999999999999999999999999999999999885444422 245899999999
Q ss_pred HHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 93 KQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 93 K~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|.|||+||+||+|.+.|+.|+++.+
T Consensus 81 K~flr~Lp~pli~~~~~~~~i~~~~ 105 (196)
T cd04395 81 KSFFRKLPEPLFTNELYPDFIEANR 105 (196)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHc
Confidence 9999999999999999999988754
No 30
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.95 E-value=3.4e-27 Score=167.38 Aligned_cols=102 Identities=20% Similarity=0.308 Sum_probs=89.5
Q ss_pred cccchHHHHhhhCCCCcHHHHHHHHHHHhcC--CCcc----CeeecCCChHHHHHHHHHHhcCCCCCCC----CCCCCHH
Q psy8293 17 FGVPLLVNIQKTGYALPKFIISSFEWLINNA--SDQI----GIFRKPGVKTRIQKLREMADEVDFKLDE----VDSQQAY 86 (124)
Q Consensus 17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~g--l~~e----GifR~~g~~~~i~~l~~~~~~~~~~~~~----~~~~~~~ 86 (124)
||+||+.++++++..||.+|.+|++||+++| +..+ ||||++|+.+.+++||+.+|++ ...+. ++..|+|
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~-~~~~~~~~~~~~~dv~ 79 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKP-KKPDKEVIILKKFEPS 79 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCC-CCcchhhhccccCCHH
Confidence 9999999999998899999999999999965 3333 9999999999999999999987 33331 3467899
Q ss_pred HHHHHHHHHHhhCCCCCCChHHHHHHHHHhccc
Q psy8293 87 DVADLVKQYFRELPEVLLTNKSSETFMSIFQPI 119 (124)
Q Consensus 87 ~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~~ 119 (124)
+||++||.|||+||+||+|+++|+.|.++++..
T Consensus 80 ~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~ 112 (212)
T cd04399 80 TVASVLKLYLLELPDSLIPHDIYDLIRSLYSAY 112 (212)
T ss_pred HHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999998876543
No 31
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=99.95 E-value=3.2e-27 Score=165.36 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=85.8
Q ss_pred hHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCC
Q psy8293 21 LLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELP 100 (124)
Q Consensus 21 L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp 100 (124)
|.++-..++..||.++.+|+++|+++|+++|||||++|+..+++++++.++++....+ +...|+|+||++||.|||+||
T Consensus 6 ~~~~~~~~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~-~~~~d~h~vaslLK~fLReLP 84 (193)
T cd04382 6 LADFDPSTSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPN-LSKVDIHVICGCLKDFLRSLK 84 (193)
T ss_pred ccccCCCCCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcc-cccCCHHHHHHHHHHHHHhCC
Confidence 4555556677899999999999999999999999999999999999999998743334 556799999999999999999
Q ss_pred CCCCChHHHHHHHHHhcc
Q psy8293 101 EVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 101 ~PLl~~~~~~~~~~~~~~ 118 (124)
+||+|.++|+.|+++++.
T Consensus 85 ePLi~~~~y~~~~~~~~~ 102 (193)
T cd04382 85 EPLITFALWKEFMEAAEI 102 (193)
T ss_pred CcCCCHHHHHHHHHHHHc
Confidence 999999999999988753
No 32
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=99.94 E-value=1.7e-26 Score=162.04 Aligned_cols=87 Identities=18% Similarity=0.318 Sum_probs=79.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHH
Q psy8293 30 YALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSS 109 (124)
Q Consensus 30 ~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~ 109 (124)
+.+|.+|.+|+++|+++|+++|||||++|+.+ +.++++.+|.+...++ ++..|+|+||++||.|||+||+||+|+++|
T Consensus 13 ~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d-~~~~dv~~va~~LK~ylReLPePLip~~~y 90 (200)
T cd04388 13 DVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVD-LEQFDVAALADALKRYLLDLPNPVIPAPVY 90 (200)
T ss_pred CCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCC-cccccHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 56999999999999999999999999999875 6789999998766677 678899999999999999999999999999
Q ss_pred HHHHHHhcc
Q psy8293 110 ETFMSIFQP 118 (124)
Q Consensus 110 ~~~~~~~~~ 118 (124)
+.|++++++
T Consensus 91 ~~fi~~~~~ 99 (200)
T cd04388 91 SEMISRAQE 99 (200)
T ss_pred HHHHHHHHc
Confidence 999998754
No 33
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.94 E-value=5.3e-26 Score=158.19 Aligned_cols=99 Identities=23% Similarity=0.370 Sum_probs=85.9
Q ss_pred ccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHHH
Q psy8293 18 GVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE-VDSQQAYDVADLVKQYF 96 (124)
Q Consensus 18 G~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~-~~~~~~~~va~~lK~fl 96 (124)
|.+|+.... .+..||.+|..|++||+++|+++|||||++|+...++++++.++.+...... .+..|+|+||+++|.||
T Consensus 2 ~~~l~~~~~-~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yL 80 (184)
T cd04385 2 GPALEDQQL-TDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFL 80 (184)
T ss_pred CccHHHhhh-CCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHH
Confidence 677775543 4577999999999999999999999999999999999999999876332221 45779999999999999
Q ss_pred hhCCCCCCChHHHHHHHHHhc
Q psy8293 97 RELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 97 r~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|+||+||+|.+.|+.|+++++
T Consensus 81 reLP~pLi~~~~~~~~~~~~~ 101 (184)
T cd04385 81 RDLPDPLLTSELHAEWIEAAE 101 (184)
T ss_pred HhCCCccCCHHHHHHHHHHHh
Confidence 999999999999999998874
No 34
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.94 E-value=5.6e-26 Score=160.52 Aligned_cols=88 Identities=27% Similarity=0.471 Sum_probs=80.1
Q ss_pred CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHH
Q psy8293 29 GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKS 108 (124)
Q Consensus 29 ~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~ 108 (124)
+..||.+|..|++||+++|+++|||||++|+..+++++++.+|.+ ..+++....|+|+||++||.|||+||+||+|.++
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~-~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~ 84 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRG-IDVVLDENHSVHDVAALLKEFFRDMPDPLLPREL 84 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcC-CCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHH
Confidence 457999999999999999999999999999999999999999988 3444345679999999999999999999999999
Q ss_pred HHHHHHHhc
Q psy8293 109 SETFMSIFQ 117 (124)
Q Consensus 109 ~~~~~~~~~ 117 (124)
|+.|+++.+
T Consensus 85 y~~~i~~~~ 93 (206)
T cd04376 85 YTAFIGTAL 93 (206)
T ss_pred HHHHHHHHc
Confidence 999998765
No 35
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.92 E-value=1.5e-24 Score=153.45 Aligned_cols=92 Identities=35% Similarity=0.521 Sum_probs=78.5
Q ss_pred cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHH
Q psy8293 17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE-VDSQQAYDVADLVKQY 95 (124)
Q Consensus 17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~-~~~~~~~~va~~lK~f 95 (124)
||-+|.+ ++ ++ .|.+|++||++ |+++|||||++|+..++++|++.+|++ ..+++ ....++|+||++||.|
T Consensus 1 ~~~~~~~----~~--~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~-~~~~~~~~~~~~h~va~lLK~f 71 (208)
T cd04392 1 FGAPLTE----EG--IA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSG-TDLDLESGGFHAHDCATVLKGF 71 (208)
T ss_pred CCCCccc----cc--cH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcC-CCCCcccccCCHHHHHHHHHHH
Confidence 6777762 22 33 77899999998 999999999999999999999999988 45552 2356899999999999
Q ss_pred HhhCCCCCCChHHHHHHHHHhc
Q psy8293 96 FRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 96 lr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
||+||+||+|.++|+.|+++.+
T Consensus 72 lReLPePLi~~~~y~~~~~i~~ 93 (208)
T cd04392 72 LGELPEPLLTHAHYPAHLQIAD 93 (208)
T ss_pred HHhCCCccCCHHHHHHHHHHHH
Confidence 9999999999999999987664
No 36
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.91 E-value=3.4e-24 Score=152.82 Aligned_cols=100 Identities=22% Similarity=0.404 Sum_probs=89.0
Q ss_pred CcccccchHHHHhhh----------------------CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHH----HHHHH
Q psy8293 14 NSVFGVPLLVNIQKT----------------------GYALPKFIISSFEWLINNASDQIGIFRKPGVKTR----IQKLR 67 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~----------------------~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~----i~~l~ 67 (124)
..+||.+|+++.... ...||.++.+|++||+++|+.+|||||++|+.+. +++++
T Consensus 10 ~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~ 89 (220)
T cd04380 10 PSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIR 89 (220)
T ss_pred cccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHH
Confidence 579999999987632 1249999999999999999999999999999999 99999
Q ss_pred HHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHh
Q psy8293 68 EMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIF 116 (124)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~ 116 (124)
+.+|++. ... ...|+|++|++||.|||+||+||+|+++|+.|+++.
T Consensus 90 ~~ld~~~-~~~--~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~ 135 (220)
T cd04380 90 DALDTGS-PFN--SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAV 135 (220)
T ss_pred HHHhCCC-CCC--CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHh
Confidence 9999883 332 567999999999999999999999999999999884
No 37
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.90 E-value=1.7e-23 Score=147.57 Aligned_cols=87 Identities=24% Similarity=0.376 Sum_probs=74.6
Q ss_pred CcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHH-HhcC---CCCCCCCC-CCCHHHHHHHHHHHHhhCCCCCCCh
Q psy8293 32 LPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREM-ADEV---DFKLDEVD-SQQAYDVADLVKQYFRELPEVLLTN 106 (124)
Q Consensus 32 vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~-~~~~---~~~~~~~~-~~~~~~va~~lK~flr~Lp~PLl~~ 106 (124)
-+.+|.+|++||+++|+++|||||++|+..+++++++. +|.+ ...+++.. ..|+|+||++||.|||+||+||+|+
T Consensus 28 ~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~~ 107 (203)
T cd04374 28 GFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMTY 107 (203)
T ss_pred cHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCCH
Confidence 35689999999999999999999999999999999875 5543 23455222 5799999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy8293 107 KSSETFMSIFQP 118 (124)
Q Consensus 107 ~~~~~~~~~~~~ 118 (124)
++|+.|+++++.
T Consensus 108 ~~y~~~i~~~~~ 119 (203)
T cd04374 108 ELHNDFINAAKS 119 (203)
T ss_pred HHHHHHHHHHhC
Confidence 999999998754
No 38
>KOG4269|consensus
Probab=99.89 E-value=1.3e-23 Score=168.72 Aligned_cols=107 Identities=29% Similarity=0.423 Sum_probs=91.1
Q ss_pred CCCCCCccccc----chHHHHhhhCCCCcHHHHHHHHHHH-hcCCCccCeeecCCChHHHHHHHHHHhcC-CCCCC-CCC
Q psy8293 9 HFKNNNSVFGV----PLLVNIQKTGYALPKFIISSFEWLI-NNASDQIGIFRKPGVKTRIQKLREMADEV-DFKLD-EVD 81 (124)
Q Consensus 9 ~~~~~~~vFG~----~L~~~~~~~~~~vP~~l~~~~~~l~-~~gl~~eGifR~~g~~~~i~~l~~~~~~~-~~~~~-~~~ 81 (124)
..+. .+|||. .+....++...++|.||.+|++||+ .+|+..|||||++|+...|+.|++.||.+ ++++. ..+
T Consensus 893 ~~~q-TgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~ 971 (1112)
T KOG4269|consen 893 SVKQ-TGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDS 971 (1112)
T ss_pred ccee-ceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccc
Confidence 3345 799994 4444555666789999999999999 59999999999999999999999999987 45554 235
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHh
Q psy8293 82 SQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIF 116 (124)
Q Consensus 82 ~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~ 116 (124)
+.|+|+|||+||+|||+||+||++.++|..|....
T Consensus 972 E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i 1006 (1112)
T KOG4269|consen 972 EMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGI 1006 (1112)
T ss_pred cccHHHHHHHHHHHHHhCCccccchhhhHHHHhhc
Confidence 67999999999999999999999999999997654
No 39
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.88 E-value=7e-22 Score=135.78 Aligned_cols=87 Identities=32% Similarity=0.504 Sum_probs=79.2
Q ss_pred CCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCC-CCCCCCHHHHHHHHHHHHhhCCCCCCChHHH
Q psy8293 31 ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLD-EVDSQQAYDVADLVKQYFRELPEVLLTNKSS 109 (124)
Q Consensus 31 ~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~-~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~ 109 (124)
.||.++..|++||+++|+++|||||++|+..+++++++.++.+.. .+ .....|+|++|+++|.|||+||+||+|.+.|
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~ 80 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPD-PDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELY 80 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCC-CCcccccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 589999999999999999999999999999999999999998733 32 2567899999999999999999999999999
Q ss_pred HHHHHHhcc
Q psy8293 110 ETFMSIFQP 118 (124)
Q Consensus 110 ~~~~~~~~~ 118 (124)
+.|+++++.
T Consensus 81 ~~~~~~~~~ 89 (174)
T smart00324 81 EEFIEAAKV 89 (174)
T ss_pred HHHHHHHhC
Confidence 999988753
No 40
>KOG2710|consensus
Probab=99.87 E-value=1.1e-21 Score=148.94 Aligned_cols=87 Identities=30% Similarity=0.452 Sum_probs=80.6
Q ss_pred CCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcC----CCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCh
Q psy8293 31 ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEV----DFKLDEVDSQQAYDVADLVKQYFRELPEVLLTN 106 (124)
Q Consensus 31 ~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~----~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~ 106 (124)
.||.+|..|+.||.++|+.+.||||++|+..++++|++.||.+ .+..+ |+.+++|++|++||.|||+||+||||.
T Consensus 93 ~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~-~e~~nvHDvAaLLK~flr~lp~pLLP~ 171 (412)
T KOG2710|consen 93 QIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVND-WEDFNVHDVAALLKEFLRDLPDPLLPL 171 (412)
T ss_pred eCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccc-cccccHHHHHHHHHHHHHhCCcccCCH
Confidence 4999999999999999999999999999999999999999987 34444 889999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy8293 107 KSSETFMSIFQP 118 (124)
Q Consensus 107 ~~~~~~~~~~~~ 118 (124)
++|+.|+..+..
T Consensus 172 ~LY~~f~~p~kl 183 (412)
T KOG2710|consen 172 ELYESFINPAKL 183 (412)
T ss_pred HHHHHHhhhhcC
Confidence 999999987753
No 41
>KOG1450|consensus
Probab=99.86 E-value=1.3e-21 Score=154.43 Aligned_cols=111 Identities=29% Similarity=0.397 Sum_probs=97.9
Q ss_pred CCCCCCCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCC--CC
Q psy8293 7 FHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDS--QQ 84 (124)
Q Consensus 7 ~~~~~~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~--~~ 84 (124)
.++.+....+||++|+.+|++.+..||.+|..|++.|+.+|++++||||++|+...|++|+..+|.+ ..+++... .|
T Consensus 447 ~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~d-~~l~l~~~~~~d 525 (650)
T KOG1450|consen 447 EPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQSDQD-NSLDLADDRWDD 525 (650)
T ss_pred ccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhcCcc-ccccccccchhH
Confidence 3333334799999999999999999999999999999999999999999999999999999999965 33442333 58
Q ss_pred HHHHHHHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 85 AYDVADLVKQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 85 ~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
+|.|+++||.||||||+||++..++..|..+.+.
T Consensus 526 ihai~galK~ffreLpdpL~p~~l~~~f~~a~~~ 559 (650)
T KOG1450|consen 526 IHAITGALKTFFRELPDPLFPKALSKDFTVALQG 559 (650)
T ss_pred HHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcc
Confidence 9999999999999999999999999999988764
No 42
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.86 E-value=2.7e-21 Score=129.88 Aligned_cols=86 Identities=28% Similarity=0.543 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHHHHH
Q psy8293 33 PKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETF 112 (124)
Q Consensus 33 P~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~ 112 (124)
|.+|..|++||+++|+.++||||++|+.++++++++.++.+......++..|+|++|+++|.||++||+||++.+.|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 88999999999999999999999999999999999999988433212678899999999999999999999999999999
Q ss_pred HHHhcc
Q psy8293 113 MSIFQP 118 (124)
Q Consensus 113 ~~~~~~ 118 (124)
+++.+.
T Consensus 81 ~~~~~~ 86 (151)
T PF00620_consen 81 IAASKS 86 (151)
T ss_dssp HHHHTS
T ss_pred hhhhcc
Confidence 976543
No 43
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.85 E-value=1e-20 Score=128.79 Aligned_cols=85 Identities=32% Similarity=0.492 Sum_probs=77.5
Q ss_pred cHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHHHHH
Q psy8293 33 PKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETF 112 (124)
Q Consensus 33 P~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~ 112 (124)
|.++..|++||+++|+.++||||++|+..+++++++.++.+....+ ....|+|++|+++|.|||+||+||+|.+.|+.+
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~-~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~ 79 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDD-LEDYDVHDVASLLKLYLRELPEPLIPFELYDEF 79 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCcc-ccccCHHHHHHHHHHHHHcCCCccCCHHHHHHH
Confidence 8899999999999999999999999999999999999998843223 567899999999999999999999999999999
Q ss_pred HHHhcc
Q psy8293 113 MSIFQP 118 (124)
Q Consensus 113 ~~~~~~ 118 (124)
+++++.
T Consensus 80 ~~~~~~ 85 (169)
T cd00159 80 IELAKI 85 (169)
T ss_pred HHHHHc
Confidence 998753
No 44
>KOG4407|consensus
Probab=99.82 E-value=2e-20 Score=154.66 Aligned_cols=106 Identities=27% Similarity=0.401 Sum_probs=89.3
Q ss_pred CcccccchHHHHhh-hCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCC--CCCCCC-CC-CHHHH
Q psy8293 14 NSVFGVPLLVNIQK-TGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDF--KLDEVD-SQ-QAYDV 88 (124)
Q Consensus 14 ~~vFG~~L~~~~~~-~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~--~~~~~~-~~-~~~~v 88 (124)
.++|||+|.++... .+.-||.+|+.|+..+|.+||++.||||++||.+.|.+|++.+|++.- .++..+ .+ |+++|
T Consensus 1155 ~~~~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVV 1234 (1973)
T KOG4407|consen 1155 QPVLGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVV 1234 (1973)
T ss_pred CcccccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHH
Confidence 45999999976443 244599999999999999999999999999999999999999998722 222122 22 89999
Q ss_pred HHHHHHHHhhCCCCCCChHHHHHHHHHhccc
Q psy8293 89 ADLVKQYFRELPEVLLTNKSSETFMSIFQPI 119 (124)
Q Consensus 89 a~~lK~flr~Lp~PLl~~~~~~~~~~~~~~~ 119 (124)
.++||.|||.|||||+|.++|..|+++=...
T Consensus 1235 SSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~ 1265 (1973)
T KOG4407|consen 1235 SSLLKMFLRKLPEPLLTDKLYPFFIEANRKS 1265 (1973)
T ss_pred HHHHHHHHHhCCcccccccchhhhhhhcccc
Confidence 9999999999999999999999999986543
No 45
>KOG4270|consensus
Probab=99.79 E-value=2e-19 Score=141.46 Aligned_cols=102 Identities=26% Similarity=0.359 Sum_probs=85.8
Q ss_pred CcccccchHHHHhhh---CCCCcHHHHHHHH-HHH-hcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHH
Q psy8293 14 NSVFGVPLLVNIQKT---GYALPKFIISSFE-WLI-NNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDV 88 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~---~~~vP~~l~~~~~-~l~-~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~v 88 (124)
..+|||+++.+.... +.-||.++..+.+ .++ +.|+..|||||++|....++.+|+.+|.+. ..+.. ..|+|++
T Consensus 144 ~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~-v~~~~-~iDvH~~ 221 (577)
T KOG4270|consen 144 ETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGV-VPDQL-YIDVHCL 221 (577)
T ss_pred hhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCc-ccccc-cCCHHHH
Confidence 589999988765432 2337999988888 665 479999999999999999999999999983 33313 6799999
Q ss_pred HHHHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 89 ADLVKQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 89 a~~lK~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|++||.||||||+|++++++|+.|+.+++
T Consensus 222 agllKayLRELPepvl~~nL~~e~~qv~~ 250 (577)
T KOG4270|consen 222 AGLLKAYLRELPEPVLTFNLYKEWTQVQN 250 (577)
T ss_pred HHHHHHHHHhCCCcCCCcccCHHHHHHHh
Confidence 99999999999999999999999997664
No 46
>KOG4406|consensus
Probab=99.78 E-value=2.7e-19 Score=134.87 Aligned_cols=102 Identities=27% Similarity=0.447 Sum_probs=92.5
Q ss_pred CCcccccchHHHHhhh--CCCCcHHHHHHHHHHHhcC-CCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCC-CHHHH
Q psy8293 13 NNSVFGVPLLVNIQKT--GYALPKFIISSFEWLINNA-SDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQ-QAYDV 88 (124)
Q Consensus 13 ~~~vFG~~L~~~~~~~--~~~vP~~l~~~~~~l~~~g-l~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~-~~~~v 88 (124)
.++-||++|+-+.+.. +..+|.+|..|+++|..+| +.+||+||.|+|...+.++++.+|+| ..++ ++.+ ++|..
T Consensus 250 ~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G-~pVd-le~~~~~h~~ 327 (467)
T KOG4406|consen 250 PTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTG-EPVD-LEVYKDLHAP 327 (467)
T ss_pred chhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCC-Cccc-HHHhccchhh
Confidence 4789999999888776 6789999999999999999 99999999999999999999999999 7888 6555 59999
Q ss_pred HHHHHHHHhhCCCCCCChHHHHHHHHHh
Q psy8293 89 ADLVKQYFRELPEVLLTNKSSETFMSIF 116 (124)
Q Consensus 89 a~~lK~flr~Lp~PLl~~~~~~~~~~~~ 116 (124)
|.++|.|||+||+||++.++|+......
T Consensus 328 avllKtF~R~LpePL~t~~~y~~lt~~~ 355 (467)
T KOG4406|consen 328 AVLLKTFLRSLPEPLLTFRLYESLTGFS 355 (467)
T ss_pred HHHHHHHHhcCCcccchhhhhhhhhccc
Confidence 9999999999999999999998876543
No 47
>KOG1453|consensus
Probab=99.78 E-value=7e-19 Score=145.94 Aligned_cols=103 Identities=20% Similarity=0.319 Sum_probs=96.0
Q ss_pred cccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHH
Q psy8293 15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQ 94 (124)
Q Consensus 15 ~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~ 94 (124)
..||+.|...+..+...||.++..|+.+|+.+|+.+|||||++|...+++.|.+.++.+...+. +...|+|++++++|.
T Consensus 601 ~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~-l~~~dih~vtsVlK~ 679 (918)
T KOG1453|consen 601 PLFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVL-LSTPDIHAVTSVLKL 679 (918)
T ss_pred ccccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCcccee-cCCCChHHHHHHHHH
Confidence 4899999999998888999999999999999999999999999999999999999998854455 778899999999999
Q ss_pred HHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 95 YFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 95 flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
|||+||+||+++.+|+.|+.+.+.
T Consensus 680 yLr~Lp~pIi~f~~y~~~~~~~~~ 703 (918)
T KOG1453|consen 680 YLRKLPEPIIIFNLYDEFLSAAKL 703 (918)
T ss_pred HHHhccccccccchHHHHHhhhcc
Confidence 999999999999999999998764
No 48
>KOG3564|consensus
Probab=99.77 E-value=2.1e-18 Score=131.80 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=86.0
Q ss_pred hHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCC
Q psy8293 21 LLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELP 100 (124)
Q Consensus 21 L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp 100 (124)
|.+.+......||.+|..|+..||++||.+|||||++|....+++|++.+-++.. .......|+|++|+++|.|||+|.
T Consensus 351 L~DF~~s~aPMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt-~p~~g~~Dihvic~~lKdFLR~Lk 429 (604)
T KOG3564|consen 351 LADFAPSTAPMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKT-TPHLGNDDIHVICCCLKDFLRNLK 429 (604)
T ss_pred hhhhcccccccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCC-CCccCCcchhHHHHHHHHHHHhcc
Confidence 4455555556799999999999999999999999999999999999999988844 433677899999999999999999
Q ss_pred CCCCChHHHHHHHHHhcc
Q psy8293 101 EVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 101 ~PLl~~~~~~~~~~~~~~ 118 (124)
+||||..+..+|+.|++.
T Consensus 430 ePLip~~~~rdf~eAa~~ 447 (604)
T KOG3564|consen 430 EPLIPFRLRRDFMEAAEI 447 (604)
T ss_pred cccccchHHHHHHHHhcC
Confidence 999999999999999864
No 49
>KOG1452|consensus
Probab=99.71 E-value=1.8e-17 Score=121.68 Aligned_cols=111 Identities=19% Similarity=0.205 Sum_probs=95.2
Q ss_pred CCCCCCCCCCCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC--
Q psy8293 3 KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV-- 80 (124)
Q Consensus 3 ~~~k~~~~~~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~-- 80 (124)
||+-.|.- ..+||.+|+.+++++...-|.++..|++.||++|++..|+|++.|+.++-+.||..|+.+...+.+-
T Consensus 174 rR~~~Prl---rgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E 250 (442)
T KOG1452|consen 174 RRTVNPRL---RGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAE 250 (442)
T ss_pred hcccCccc---ccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccc
Confidence 44444544 4699999999999998889999999999999999999999999999999999999999775555522
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHh
Q psy8293 81 DSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIF 116 (124)
Q Consensus 81 ~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~ 116 (124)
...|.+.|++++|.|+||||||++|...++.-.+|+
T Consensus 251 ~iPD~nvItg~~kD~lrElpEPl~t~~~f~m~~dA~ 286 (442)
T KOG1452|consen 251 SIPDYNVITGDSKDELRELPEPLVTGQDFEMDFDAA 286 (442)
T ss_pred cCCCcceeecccHhHHHhCCCccccchhhhhhhhhh
Confidence 123788999999999999999999998888777765
No 50
>KOG1117|consensus
Probab=99.60 E-value=3.3e-15 Score=120.68 Aligned_cols=90 Identities=21% Similarity=0.316 Sum_probs=81.1
Q ss_pred CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC-CCCCHHHHHHHHHHHHhhCCCCCCChH
Q psy8293 29 GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV-DSQQAYDVADLVKQYFRELPEVLLTNK 107 (124)
Q Consensus 29 ~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~-~~~~~~~va~~lK~flr~Lp~PLl~~~ 107 (124)
+..||.+|..|+.|+.++||..|||||.+|...+++.|-+.|-++...+.+- .+..+.+|+++||.|||+|++||+|.+
T Consensus 724 ~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~~ 803 (1186)
T KOG1117|consen 724 KNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTKE 803 (1186)
T ss_pred CCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccchh
Confidence 5679999999999999999999999999999999999999998876655522 345799999999999999999999999
Q ss_pred HHHHHHHHhcc
Q psy8293 108 SSETFMSIFQP 118 (124)
Q Consensus 108 ~~~~~~~~~~~ 118 (124)
+|..|+++++.
T Consensus 804 ~~~~w~eaae~ 814 (1186)
T KOG1117|consen 804 LYPYWIEAAET 814 (1186)
T ss_pred hhhhHHHhhhc
Confidence 99999999863
No 51
>KOG4271|consensus
Probab=99.53 E-value=3.7e-15 Score=121.01 Aligned_cols=102 Identities=21% Similarity=0.310 Sum_probs=89.3
Q ss_pred CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHH
Q psy8293 14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE-VDSQQAYDVADLV 92 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~-~~~~~~~~va~~l 92 (124)
...||+++..++.. ..++|..+++|++||+..|+.+||+||++|+.....+++..|.++ ..+++ ..+..+|+||+.+
T Consensus 915 s~~~~~~l~~~~t~-~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~-~~~dl~s~d~~v~~vagAl 992 (1100)
T KOG4271|consen 915 SNYFLTPLQDAVTS-EKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLND-HNFDLSSMDTTVNVVAGAL 992 (1100)
T ss_pred hhccCCcccccccC-CcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhh-ccccccccccccccccCcc
Confidence 46899999976654 567999999999999999999999999999999999999999875 44552 1244699999999
Q ss_pred HHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 93 KQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 93 K~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|.||..||+||+|+++++.+.++++
T Consensus 993 ksffa~Lpeplipys~h~~~~e~~k 1017 (1100)
T KOG4271|consen 993 KSFFACLPEPLIPYSYHPRLKEAMK 1017 (1100)
T ss_pred hhhhhhCCCcccCccCCcchhhhhh
Confidence 9999999999999999999999887
No 52
>KOG1451|consensus
Probab=99.52 E-value=2.6e-14 Score=111.91 Aligned_cols=87 Identities=24% Similarity=0.445 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHH-h-cCCCC--CCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHH
Q psy8293 34 KFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMA-D-EVDFK--LDEVDSQQAYDVADLVKQYFRELPEVLLTNKSS 109 (124)
Q Consensus 34 ~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~-~-~~~~~--~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~ 109 (124)
.+|.+|++.|+..|++++|+||..|...+++.|...+ | +.+.+ .+.++++++-+|+|.||.|||.||+||++++++
T Consensus 390 ~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LH 469 (812)
T KOG1451|consen 390 EFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELH 469 (812)
T ss_pred HHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHH
Confidence 6899999999999999999999999999999987664 3 11122 232367899999999999999999999999999
Q ss_pred HHHHHHhcccc
Q psy8293 110 ETFMSIFQPIY 120 (124)
Q Consensus 110 ~~~~~~~~~~~ 120 (124)
..|+.|++..+
T Consensus 470 k~FI~AAKsdn 480 (812)
T KOG1451|consen 470 KVFINAAKSDN 480 (812)
T ss_pred HHHHHHHhccc
Confidence 99999996443
No 53
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.18 E-value=1.4e-10 Score=81.37 Aligned_cols=85 Identities=15% Similarity=0.113 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHhcCCCccCe---eecCCChHHHHHH-HHHHhcCCCCCCC-------CCCCCHHHHHHHHHHHHhhCCC
Q psy8293 33 PKFIISSFEWLINNASDQIGI---FRKPGVKTRIQKL-REMADEVDFKLDE-------VDSQQAYDVADLVKQYFRELPE 101 (124)
Q Consensus 33 P~~l~~~~~~l~~~gl~~eGi---fR~~g~~~~i~~l-~~~~~~~~~~~~~-------~~~~~~~~va~~lK~flr~Lp~ 101 (124)
=.++..|.+.|+.+|+++++| ||.+++...++.+ ++.|+.+...... ....|+|+++++||.+++.||+
T Consensus 7 ~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~ 86 (198)
T cd04401 7 KGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPG 86 (198)
T ss_pred HHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCC
Confidence 468899999999999999999 8999999999888 5666655333320 2346999999999999999999
Q ss_pred CCCCh-HHHHHHHHHhc
Q psy8293 102 VLLTN-KSSETFMSIFQ 117 (124)
Q Consensus 102 PLl~~-~~~~~~~~~~~ 117 (124)
+++++ +.|..|...-+
T Consensus 87 ~~v~~~~~Y~~F~~~E~ 103 (198)
T cd04401 87 SKVIWWEVYEEFKARER 103 (198)
T ss_pred CccCCHHHHHHHHHHHH
Confidence 99999 99999998643
No 54
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.15 E-value=1.1e-10 Score=83.10 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=81.3
Q ss_pred cccccchHHHHhhhCCCCcHHHHHHH--HHHHhcCCCc--cCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCC-H----
Q psy8293 15 SVFGVPLLVNIQKTGYALPKFIISSF--EWLINNASDQ--IGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQ-A---- 85 (124)
Q Consensus 15 ~vFG~~L~~~~~~~~~~vP~~l~~~~--~~l~~~gl~~--eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~-~---- 85 (124)
++||+|+-+-+.+.+...|..+..-. +++..+.++. .|+|+.++...++...++.++..++.+..-.... .
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 58999988777777888888887666 5555555554 7999999999999999999987654422111122 2
Q ss_pred ------HHHHHHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 86 ------YDVADLVKQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 86 ------~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
-+||++++.||++|||||+|..+|+.|..+++-
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~l 138 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILEL 138 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHH
Confidence 279999999999999999999999999998873
No 55
>KOG4724|consensus
Probab=99.15 E-value=1.6e-11 Score=97.39 Aligned_cols=101 Identities=19% Similarity=0.225 Sum_probs=93.0
Q ss_pred CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q psy8293 14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVK 93 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK 93 (124)
..+||.||...|.+.. +|.-++.+.-++-..|-.++||||...+...++++++.+|.| .++. ++...+++.|+++|
T Consensus 80 ~~Lfg~pl~nic~~~~--lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsg-v~v~-l~~~~i~v~a~v~k 155 (741)
T KOG4724|consen 80 SFLFGWPLTNICVHFR--LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSG-VDVG-LKSGEIVVDAAVDK 155 (741)
T ss_pred ccccCccchhhcccCC--CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhccc-cccc-ccccceEEeehhhh
Confidence 7899999999998866 899999999999999999999999999999999999999998 5666 77889999999999
Q ss_pred HHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 94 QYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 94 ~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
.|+|.+|.-++..++|+.|..+..+
T Consensus 156 dflr~ip~~~lSsdl~~hw~~~~~~ 180 (741)
T KOG4724|consen 156 DFLRTIPQLTLSSDLNSHWQLQGPE 180 (741)
T ss_pred chhhhchhhhhccccHHHHhhcccc
Confidence 9999999999999999999877654
No 56
>KOG3565|consensus
Probab=98.36 E-value=3.4e-07 Score=74.13 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=74.7
Q ss_pred CCCCcHHHHHHHHHHHhcCCCccCeee-cCCChHHHHHHHHHHhcCCCCCC-CCCCCCHHHHHHHHHHHHhhCCCC-CCC
Q psy8293 29 GYALPKFIISSFEWLINNASDQIGIFR-KPGVKTRIQKLREMADEVDFKLD-EVDSQQAYDVADLVKQYFRELPEV-LLT 105 (124)
Q Consensus 29 ~~~vP~~l~~~~~~l~~~gl~~eGifR-~~g~~~~i~~l~~~~~~~~~~~~-~~~~~~~~~va~~lK~flr~Lp~P-Ll~ 105 (124)
+..+|.++..|+.+++.+|+..+|||| ++|....+..++.++..+ ..+. ...+.+... |.++|.|++.+.+| .++
T Consensus 215 ~q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g-~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~ 292 (640)
T KOG3565|consen 215 FQFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERG-MRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFP 292 (640)
T ss_pred cccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-hHhhhhccCcchhH-HHHHHHHHccCCCcccCc
Confidence 346999999999999999999999999 999999999999999877 3332 133445555 99999999999999 999
Q ss_pred hHHHHHHHHHhcc
Q psy8293 106 NKSSETFMSIFQP 118 (124)
Q Consensus 106 ~~~~~~~~~~~~~ 118 (124)
++.+..+.++...
T Consensus 293 ~e~~~~~~~~~~~ 305 (640)
T KOG3565|consen 293 FEDFGQPHDCAAR 305 (640)
T ss_pred cccccchhhhhhh
Confidence 9999998877653
No 57
>KOG4370|consensus
Probab=98.30 E-value=1.3e-06 Score=66.97 Aligned_cols=105 Identities=28% Similarity=0.401 Sum_probs=76.7
Q ss_pred CcccccchHHHHhh----hCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcC----------------
Q psy8293 14 NSVFGVPLLVNIQK----TGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEV---------------- 73 (124)
Q Consensus 14 ~~vFG~~L~~~~~~----~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~---------------- 73 (124)
.++-|.++..-+.. ++.+.|..+....++.+.+|+-++|++|.+....+.++++.+-+.+
T Consensus 49 ~~~~~l~~~~~v~~d~e~d~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k 128 (514)
T KOG4370|consen 49 KRVLGLPLTESVSADPELDGIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIK 128 (514)
T ss_pred ChhhcCCCCcccccCcccCCCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHH
Confidence 34455554433222 2456899999999999999999999999999887766665443321
Q ss_pred ------C-----------------CCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 74 ------D-----------------FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 74 ------~-----------------~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
+ .......++++.+|||++|.|+|+||++++|.++...|..++.+
T Consensus 129 ~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h 196 (514)
T KOG4370|consen 129 RFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLH 196 (514)
T ss_pred HhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHcc
Confidence 0 00001235578999999999999999999999999999988753
No 58
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=97.73 E-value=0.00016 Score=56.19 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=65.4
Q ss_pred CcHHHHHHHHHHHhcCCCccCee---ecCCChHHHHHHHH-HHhcCCCC--CC------CCCCCCHHHHHHHHHHHHhhC
Q psy8293 32 LPKFIISSFEWLINNASDQIGIF---RKPGVKTRIQKLRE-MADEVDFK--LD------EVDSQQAYDVADLVKQYFREL 99 (124)
Q Consensus 32 vP~~l~~~~~~l~~~gl~~eGif---R~~g~~~~i~~l~~-~~~~~~~~--~~------~~~~~~~~~va~~lK~flr~L 99 (124)
|=.+|..|.+.|..+|+++++|| |-.-+...++.+.. .|..+... .+ .....++|+++++||-.+..|
T Consensus 8 v~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RL 87 (420)
T PF08101_consen 8 VKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRL 87 (420)
T ss_pred HHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence 45789999999999999999998 66667777766654 44444221 11 123568999999999999999
Q ss_pred CCCCCChHHHHHHHHH
Q psy8293 100 PEVLLTNKSSETFMSI 115 (124)
Q Consensus 100 p~PLl~~~~~~~~~~~ 115 (124)
|..+++++.|..|...
T Consensus 88 p~gvVgW~~Y~~Fk~~ 103 (420)
T PF08101_consen 88 PGGVVGWDSYEEFKRR 103 (420)
T ss_pred CCCccccHHHHHHHHH
Confidence 9999999999999754
No 59
>KOG4724|consensus
Probab=97.71 E-value=6.7e-05 Score=60.50 Aligned_cols=101 Identities=17% Similarity=0.172 Sum_probs=73.9
Q ss_pred CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHH----HHhcCCCCCCCCCCCCHHHHH
Q psy8293 14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLRE----MADEVDFKLDEVDSQQAYDVA 89 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~va 89 (124)
...||+||+..+...+ ..|.-+.....-+...+.+++++||..-..+-+.+-.. .++.....++ .+...+|+++
T Consensus 414 kv~fdaPlS~~c~d~g-k~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vd-v~sspv~taa 491 (741)
T KOG4724|consen 414 KVPFDAPLSVFCADQG-KTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVD-VPSSPVHTAA 491 (741)
T ss_pred hCcCCCchhhcccccC-CCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCccc-CCCCCchHHH
Confidence 5789999998888754 35665555666677788999999988554444432222 2223234555 5566899999
Q ss_pred HHHHHHHhhCCCCCCChHHHHHHHHHh
Q psy8293 90 DLVKQYFRELPEVLLTNKSSETFMSIF 116 (124)
Q Consensus 90 ~~lK~flr~Lp~PLl~~~~~~~~~~~~ 116 (124)
+++|.|+|++|..++..+.+.++.+|-
T Consensus 492 sv~KdfnRKtpRgi~sr~ihke~~ea~ 518 (741)
T KOG4724|consen 492 SVHKDFNRKTPRGIPSREIHKESMEAT 518 (741)
T ss_pred HHHHHhhhhcCCCccchHHHHHhhhhh
Confidence 999999999999999999998887764
No 60
>KOG1453|consensus
Probab=86.81 E-value=0.13 Score=44.13 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=73.8
Q ss_pred ccccchHHH-H-hhhCCCCcHHHHH-HHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCC-CCCCC-CC---CCCHHH
Q psy8293 16 VFGVPLLVN-I-QKTGYALPKFIIS-SFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD-FKLDE-VD---SQQAYD 87 (124)
Q Consensus 16 vFG~~L~~~-~-~~~~~~vP~~l~~-~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~-~~~~~-~~---~~~~~~ 87 (124)
++|+++..+ . .......|.++.. |.......|....++||.+|+...+...+..++... ...+. .. ..++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 788877765 2 3334456888877 777777789999999999999999999999888553 22221 11 224555
Q ss_pred HHHHHHHHHhhC--CCCCCChHHHHHHHH
Q psy8293 88 VADLVKQYFREL--PEVLLTNKSSETFMS 114 (124)
Q Consensus 88 va~~lK~flr~L--p~PLl~~~~~~~~~~ 114 (124)
.++.++.++|.+ |.+...++.|..|.+
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~ 570 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFME 570 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhh
Confidence 677999999999 999888888888874
No 61
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=74.02 E-value=3.7 Score=24.30 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=31.7
Q ss_pred ccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCC
Q psy8293 50 QIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPE 101 (124)
Q Consensus 50 ~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~ 101 (124)
.+|-|+++|+. .+.++.+.++-. ++ ..+.+++|+.+-..+..+|.
T Consensus 4 ~~~~~~v~G~~-~l~~l~~~~~~~---l~---~~~~~Tl~G~i~~~l~~iP~ 48 (81)
T PF03471_consen 4 DDGTYIVSGST-PLDDLNELLGLD---LP---EEDYDTLGGLILEQLGRIPE 48 (81)
T ss_dssp TTSEEEEETTS-BHHHHHHHHTS----TT---TTTTSBHHHHHHHHHTSS--
T ss_pred cCCEEEEEecC-CHHHHHHHHCcC---CC---ccchhhHHHHHHHHcCCCCC
Confidence 36889999984 456677777643 32 34677999999999998886
No 62
>COG4835 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.61 E-value=6.1 Score=25.36 Aligned_cols=46 Identities=11% Similarity=0.235 Sum_probs=34.0
Q ss_pred cCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhC
Q psy8293 51 IGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFREL 99 (124)
Q Consensus 51 eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~L 99 (124)
-.-|+++|..+++..++..+-.... + ++..++...|.=|-.++..|
T Consensus 61 lenfvisG~ISqi~~i~~~iv~e~s--e-leqeeve~La~Plld~lkRL 106 (124)
T COG4835 61 LENFVISGRISQINQIKDRIVKEPS--E-LEQEEVEGLAAPLLDMLKRL 106 (124)
T ss_pred eeeeEEeeehHHHHHHHhHhccCHH--H-hhHHHHHHHHHHHHHHHHHh
Confidence 3458999999999999988864322 2 55667888777777777765
No 63
>KOG4370|consensus
Probab=59.73 E-value=9.9 Score=30.15 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHh
Q psy8293 82 SQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIF 116 (124)
Q Consensus 82 ~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~ 116 (124)
..|+|+.++..|.|++.+|+|++|-++-..+.++.
T Consensus 117 ~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci 151 (514)
T KOG4370|consen 117 FADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCI 151 (514)
T ss_pred HHHHHHHHhHHHHhhhccCCccccccchHHHHHHh
Confidence 34899999999999999999999977655555554
No 64
>COG2747 FlgM Negative regulator of flagellin synthesis (anti-sigma28 factor) [Transcription / Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.97 E-value=30 Score=21.48 Aligned_cols=34 Identities=12% Similarity=0.423 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhh
Q psy8293 59 VKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRE 98 (124)
Q Consensus 59 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~ 98 (124)
+..+|.+|++++..|...+ |..-||.-|-.|+.+
T Consensus 59 ~~~kVeeiK~aI~~G~ykv------D~~kiAd~ll~f~~~ 92 (93)
T COG2747 59 REEKVEELKQAIENGEYKV------DTEKIADKLLDFAKQ 92 (93)
T ss_pred hHHHHHHHHHHHHcCCeee------cHHHHHHHHHHHHhc
Confidence 5689999999999985544 577777777677654
No 65
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=56.22 E-value=43 Score=20.30 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhC---------------CCCCCChHHHHHHHH
Q psy8293 59 VKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFREL---------------PEVLLTNKSSETFMS 114 (124)
Q Consensus 59 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~L---------------p~PLl~~~~~~~~~~ 114 (124)
+...++++.+.+.. ..+. +.-+..++++-|-|..+| ..||-|..+.+++..
T Consensus 18 ~k~~iKr~~~~~~~--~~v~---~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rr 83 (85)
T cd08048 18 PKAAIKRLIQSVTG--QSVS---QNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYRR 83 (85)
T ss_pred cHHHHHHHHHHHcC--CCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHH
Confidence 34455555444322 2232 334677899999999999 899999988887754
No 66
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=55.03 E-value=44 Score=22.30 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCCCcc--CeeecCCChHHHHHHHHHHhcC
Q psy8293 34 KFIISSFEWLINNASDQI--GIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 34 ~~l~~~~~~l~~~gl~~e--GifR~~g~~~~i~~l~~~~~~~ 73 (124)
..+..|++.|.++|...+ -+|++||.-+-.-.++..++.+
T Consensus 20 ~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~ 61 (144)
T PF00885_consen 20 RLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESG 61 (144)
T ss_dssp HHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhccc
Confidence 567789999999998655 7899999999999888888765
No 67
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=49.44 E-value=67 Score=21.35 Aligned_cols=40 Identities=10% Similarity=0.138 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCCcc--CeeecCCChHHHHHHHHHHhcC
Q psy8293 34 KFIISSFEWLINNASDQI--GIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 34 ~~l~~~~~~l~~~gl~~e--GifR~~g~~~~i~~l~~~~~~~ 73 (124)
..+..|.+.+.++|...+ -+|++||.-+-.-.++....++
T Consensus 17 ~L~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~~~ 58 (138)
T TIGR00114 17 MLLKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAETG 58 (138)
T ss_pred HHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcC
Confidence 467788899999998776 6899999988887777776544
No 68
>KOG4271|consensus
Probab=45.06 E-value=16 Score=31.86 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=62.0
Q ss_pred cccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccC---eeecCC-ChHHHHHHHHHHh-cCCCCCCCCCCCCHH--H
Q psy8293 15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIG---IFRKPG-VKTRIQKLREMAD-EVDFKLDEVDSQQAY--D 87 (124)
Q Consensus 15 ~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eG---ifR~~g-~~~~i~~l~~~~~-~~~~~~~~~~~~~~~--~ 87 (124)
.++|.|..-.++. -..-|.+.++-+.+|..+|+..|| |-|.+. +...|+.=...++ .|...+...+.++|| .
T Consensus 355 s~~~rps~g~le~-~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~ 433 (1100)
T KOG4271|consen 355 SVLGRPSLGALEN-SDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSY 433 (1100)
T ss_pred hhhcCcchhhhhh-hcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhH
Confidence 4566644433332 234699999999999999999999 888888 6666666556665 333333323344677 4
Q ss_pred HHHHHH--HHHhhCCCCCCChHHHHHH
Q psy8293 88 VADLVK--QYFRELPEVLLTNKSSETF 112 (124)
Q Consensus 88 va~~lK--~flr~Lp~PLl~~~~~~~~ 112 (124)
|...++ .-+|..+..+.+......+
T Consensus 434 v~e~Ie~~~~lr~~~~~~~~~~~C~~l 460 (1100)
T KOG4271|consen 434 VGESIEKSHSLRQQGQQIAPKLQCVFL 460 (1100)
T ss_pred HHhhhhhhhhhhhcccccCCccccccc
Confidence 666666 5667666666555544433
No 69
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=43.70 E-value=27 Score=20.19 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHhcCCCccCeeec
Q psy8293 33 PKFIISSFEWLINNASDQIGIFRK 56 (124)
Q Consensus 33 P~~l~~~~~~l~~~gl~~eGifR~ 56 (124)
+.-.....+.|+++++..+|+|++
T Consensus 49 ~~d~~~i~~~l~~~~i~~~~iy~~ 72 (73)
T PF11823_consen 49 PEDLEKIKEILEENGIEYEGIYEI 72 (73)
T ss_pred hhhHHHHHHHHHHCCCCeeEEEEe
Confidence 346778888999999999999985
No 70
>KOG2015|consensus
Probab=43.20 E-value=37 Score=26.31 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHHHhcCCCccCeeecCCC---hHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHH
Q psy8293 32 LPKFIISSFEWLINNASDQIGIFRKPGV---KTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQ 94 (124)
Q Consensus 32 vP~~l~~~~~~l~~~gl~~eGifR~~g~---~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~ 94 (124)
.|...+.|++|..-.-...+-.|-++++ .++++.+.++.+......+ ....+-..+.+++|.
T Consensus 211 tPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~hI~wi~er~~eRA~ef~-I~gv~~~lvtGvvK~ 275 (422)
T KOG2015|consen 211 TPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEHIEWIVERSNERANEFN-ITGVTRRLVTGVVKR 275 (422)
T ss_pred CCCCchHhhhhhhhhcchhhCccCCCCCCCCHHHHHHHHHHHHHHhhhcc-cccchHHhhhhhHHh
Confidence 7999999999998755556666655544 4555666666554323332 222345555566654
No 71
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=41.73 E-value=61 Score=17.79 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q psy8293 59 VKTRIQKLREMADEVDFKLDEVDSQQAYDVADLV 92 (124)
Q Consensus 59 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~l 92 (124)
+..+|.+|++.++.|...+ |...+|.-+
T Consensus 26 r~~kV~~ik~~I~~G~Y~v------d~~~iA~~m 53 (57)
T PF04316_consen 26 RAEKVAEIKAAIASGTYKV------DAEKIAEKM 53 (57)
T ss_dssp SHHHHHHHHHHHHTT-----------HHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCC------CHHHHHHHH
Confidence 5689999999999995554 466666644
No 72
>COG1894 NuoF NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]
Probab=41.70 E-value=29 Score=27.36 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=36.6
Q ss_pred CCCCCCCCCCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCcc---CeeecCCChH
Q psy8293 4 KTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQI---GIFRKPGVKT 61 (124)
Q Consensus 4 ~~k~~~~~~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~e---GifR~~g~~~ 61 (124)
|.|+|-.-. ..+||.|-...--.+=..||.++..-.+|-..-|.... -+|.++|+.+
T Consensus 196 R~KPPfPa~-~GL~G~PT~INNVET~a~vP~Ii~~G~~wf~~~G~~~s~GTKlf~~sG~V~ 255 (424)
T COG1894 196 RLKPPFPAT-SGLYGKPTVINNVETLANVPAIIRRGADWFRSIGKPNSRGTKLFSLSGHVK 255 (424)
T ss_pred CCCCCCccc-cCccCCCceeecchhhhhhHHHHHhhHHHHHhcCCCCCCCceEEEeecccc
Confidence 456665544 89999986422111123599999999999998663222 2677777654
No 73
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=41.29 E-value=65 Score=19.68 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q psy8293 59 VKTRIQKLREMADEVDFKLDEVDSQQAYDVADLV 92 (124)
Q Consensus 59 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~l 92 (124)
+.++|++||+.+..|...+ |...||.-|
T Consensus 64 ~~~kV~~ik~aI~~G~Y~v------d~~~iA~~m 91 (95)
T TIGR03824 64 DAEKVAEIKAAIANGSYKV------DAEKIADKL 91 (95)
T ss_pred hHHHHHHHHHHHHcCCCCC------CHHHHHHHH
Confidence 4589999999999985544 467777654
No 74
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=38.64 E-value=48 Score=22.52 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHHHHHhcCC--CccCeeecCCC
Q psy8293 30 YALPKFIISSFEWLINNAS--DQIGIFRKPGV 59 (124)
Q Consensus 30 ~~vP~~l~~~~~~l~~~gl--~~eGifR~~g~ 59 (124)
..+|..+.++++||+++.+ ...|-|-+.|+
T Consensus 13 ~~l~~~l~~~i~~l~~~~~~~l~~Gk~~I~Gd 44 (154)
T COG2731 13 KGLPKALQRAIDFLENTDLAELPPGKYEIDGD 44 (154)
T ss_pred cccCHHHHHHHHHHHhcchhhcCCceEeccCC
Confidence 3589999999999999765 56787777764
No 75
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=37.37 E-value=1.3e+02 Score=20.16 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHhcCCCcc--CeeecCCChHHHHHHHHHHhcC
Q psy8293 33 PKFIISSFEWLINNASDQI--GIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 33 P~~l~~~~~~l~~~gl~~e--GifR~~g~~~~i~~l~~~~~~~ 73 (124)
-..+.-+.+.|.++|...+ -++++||.-+-.-.++.....+
T Consensus 23 ~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~ 65 (141)
T PLN02404 23 KNLLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSG 65 (141)
T ss_pred HHHHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcC
Confidence 3567788999999997654 6889999988887777766544
No 76
>PF09088 MIF4G_like: MIF4G like; InterPro: IPR015172 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 1", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=35.51 E-value=28 Score=24.54 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=29.3
Q ss_pred CCCCCCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhc
Q psy8293 8 HHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINN 46 (124)
Q Consensus 8 ~~~~~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~ 46 (124)
|......-.+|.=|.++|+.....+|.++.++++++.++
T Consensus 83 P~p~~~~iyY~sllielCk~~P~~i~pv~~~air~ly~~ 121 (191)
T PF09088_consen 83 PSPPHKLIYYHSLLIELCKLSPSAIPPVLGRAIRFLYRN 121 (191)
T ss_dssp S--SS-HHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHG
T ss_pred CCCCCchhHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 333333456677778899988778999999999999987
No 77
>KOG3242|consensus
Probab=34.65 E-value=1.5e+02 Score=20.94 Aligned_cols=87 Identities=9% Similarity=0.189 Sum_probs=56.2
Q ss_pred CCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHH--HHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCC----CCC
Q psy8293 31 ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKL--REMADEVDFKLDEVDSQQAYDVADLVKQYFRELPE----VLL 104 (124)
Q Consensus 31 ~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l--~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~----PLl 104 (124)
.+-.+=...++||+++-. .|.==+.||.-.++.+ +..+-.-...+. ....|+.+|-.+.++|.-+++. .=.
T Consensus 101 tl~~aEnevl~yikk~ip--~~~~~laGNSV~~DrlFl~k~mPk~~~~lh-yrivDVStIkeL~~Rw~P~~~~~aPkK~~ 177 (208)
T KOG3242|consen 101 TLADAENEVLEYIKKHIP--KGKCPLAGNSVYMDRLFLKKYMPKLIKHLH-YRIVDVSTIKELARRWYPDIKARAPKKKA 177 (208)
T ss_pred cHHHHHHHHHHHHHHhCC--CCCCCccCcchhhHHHHHHHHhHHHHHhcc-eeeeeHHHHHHHHHHhCchhhccCccccc
Confidence 355566677889998754 5666678887777654 222221111111 3455899999999999988866 446
Q ss_pred ChHHHHHHHHHhcccc
Q psy8293 105 TNKSSETFMSIFQPIY 120 (124)
Q Consensus 105 ~~~~~~~~~~~~~~~~ 120 (124)
+...++.+.+...+.-
T Consensus 178 ~HrAldDI~ESI~ELq 193 (208)
T KOG3242|consen 178 THRALDDIRESIKELQ 193 (208)
T ss_pred ccchHHHHHHHHHHHH
Confidence 6777777776655443
No 78
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=34.32 E-value=61 Score=24.14 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=30.8
Q ss_pred cCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293 51 IGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102 (124)
Q Consensus 51 eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P 102 (124)
.|-|.++|... +..+.+.++.. +...+..++|+++-.-|..+|++
T Consensus 209 ~~~~~v~G~~~-l~dl~~~l~~~------l~~~~~~Tl~G~i~~~l~~iP~~ 253 (292)
T PRK15094 209 RHTWTVRALAS-IEDFNEAFGTH------FSDEEVDTIGGLVMQAFGHLPAR 253 (292)
T ss_pred CCeEEEEeccC-HHHHHHHhCCC------CCCCCCccHHHHHHHHhCcCCCC
Confidence 45677777644 55566666432 23347889999999999998864
No 79
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=34.20 E-value=1e+02 Score=18.23 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHHhcCC----------CccCeeec----CCChHHHHHHHHHHhcC
Q psy8293 32 LPKFIISSFEWLINNAS----------DQIGIFRK----PGVKTRIQKLREMADEV 73 (124)
Q Consensus 32 vP~~l~~~~~~l~~~gl----------~~eGifR~----~g~~~~i~~l~~~~~~~ 73 (124)
-|-++.+...-...+|. +.+|+.|+ .|+...++++.+.+++-
T Consensus 12 ~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 12 DPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKL 67 (76)
T ss_pred CCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCC
Confidence 47888888888888773 34577766 78999999998888754
No 80
>PF11181 YflT: Heat induced stress protein YflT
Probab=34.03 E-value=1.2e+02 Score=18.74 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy8293 36 IISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFR 97 (124)
Q Consensus 36 l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr 97 (124)
+...++-|...|...+.||=++-+..+.+.|...-+.. .+. ... ..+..-+|.+|+
T Consensus 12 ~~~~I~~L~~~Gy~~ddI~Vva~d~~~~~~l~~~t~~~--~~~-~~~---~~~~d~~~~~f~ 67 (103)
T PF11181_consen 12 ALSAIEELKAQGYSEDDIYVVAKDKDRTERLADQTDTN--TVG-ASE---ESFWDKIKNFFT 67 (103)
T ss_pred HHHHHHHHHHcCCCcccEEEEEcCchHHHHHHHhcCCc--eec-ccc---ccHHHHHHHhcc
Confidence 45677888889999999999998988888887665432 111 111 345556666665
No 81
>PRK11573 hypothetical protein; Provisional
Probab=33.08 E-value=48 Score=26.01 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=32.8
Q ss_pred cCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293 51 IGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102 (124)
Q Consensus 51 eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P 102 (124)
+|-|.++|.. .++.+.+.++-+ +.+.+.+++|+++-.-+..+|++
T Consensus 331 ~~~~~v~G~~-~l~d~~~~l~~~------l~~~~~~Tl~G~i~~~lg~iP~~ 375 (413)
T PRK11573 331 DGSVIIDGTA-NVREINKAFNWH------LPEDDARTVNGVILEALEEIPVA 375 (413)
T ss_pred CCEEEEEeee-EHHHHHHHhCCC------CCCCCCeeHHHHHHHHhCcCCCC
Confidence 5778888874 466676666432 22346789999999999999874
No 82
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=28.15 E-value=58 Score=17.15 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhCCCCC
Q psy8293 87 DVADLVKQYFRELPEVL 103 (124)
Q Consensus 87 ~va~~lK~flr~Lp~PL 103 (124)
-+...||.||++-|-++
T Consensus 27 pLP~~LKdyL~~y~~~i 43 (43)
T cd03735 27 PLNPVLKDYLKSFPFQI 43 (43)
T ss_pred cCCHHHHHHHHhCCCCC
Confidence 34678999999887653
No 83
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=27.75 E-value=50 Score=24.68 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhCCCCCCChHHHHHHHHHhccccc
Q psy8293 88 VADLVKQYFRELPEVLLTNKSSETFMSIFQPIYM 121 (124)
Q Consensus 88 va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~~~~ 121 (124)
-.+-+|.|+++---|-+|.++.+.|.++.++..+
T Consensus 81 ~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~ri 114 (276)
T PF08491_consen 81 SNGELKEYLREVVAPQLPEELRPSFEKALEDGRI 114 (276)
T ss_pred cchHHHHHHHHHHHhhchHHHHHHHHHHhccCCc
Confidence 3568899999999999999999999999887654
No 84
>KOG4270|consensus
Probab=27.64 E-value=53 Score=27.21 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHH
Q psy8293 33 PKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSS 109 (124)
Q Consensus 33 P~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~ 109 (124)
+.-..+|..+...++...+|.++.+| +.+..+++.-+.....+....+...+++.+..+.+++.+ ++.++.-+
T Consensus 59 ~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~e~e~~~~kie~~~d~~~~~~~~f~~~~~~~~--f~~~~~e~ 131 (577)
T KOG4270|consen 59 DMDSEQLRLFQAQKSSGEEGLFRLPG--AKIDTLKEEEEECGMKIEQPTDQRHADHVTFDRKEGEYL--FLGLPVEF 131 (577)
T ss_pred hcchhhhhhhhhhhhhhhccccccCc--chhhhhhchHHhhcCccccCcchhhhhhhhhhhhcchhh--hccchhhh
Confidence 44457888888888888999999999 455555554443334454234557888999999888877 56555444
No 85
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=27.40 E-value=1.6e+02 Score=18.54 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHHhhC
Q psy8293 81 DSQQAYDVADLVKQYFREL 99 (124)
Q Consensus 81 ~~~~~~~va~~lK~flr~L 99 (124)
....+..+|..+|.||++.
T Consensus 17 ~~~qC~~cA~Al~~~L~~~ 35 (100)
T PF15643_consen 17 KIFQCVECASALKQFLKQA 35 (100)
T ss_pred CceehHHHHHHHHHHHHHC
Confidence 3557888999999999753
No 86
>KOG0258|consensus
Probab=26.42 E-value=2e+02 Score=23.02 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHHHHHhc-C--CCccCeeecCCChHHHHHHHHHHhcC
Q psy8293 30 YALPKFIISSFEWLINN-A--SDQIGIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 30 ~~vP~~l~~~~~~l~~~-g--l~~eGifR~~g~~~~i~~l~~~~~~~ 73 (124)
..||.+-....+||+++ | -+-+.||-..|....+..+.+.+.++
T Consensus 113 qGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~ 159 (475)
T KOG0258|consen 113 QGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAG 159 (475)
T ss_pred cCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcC
Confidence 35888888888888875 3 45678888888888888888877765
No 87
>PF15063 TC1: Thyroid cancer protein 1
Probab=26.32 E-value=80 Score=18.90 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=25.9
Q ss_pred CccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q psy8293 49 DQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVK 93 (124)
Q Consensus 49 ~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK 93 (124)
...++|+.+|+....+..+-.+..+ .|+..+|..|.
T Consensus 41 qlqrLF~~sGD~kAEeRA~iI~~~~---------~d~ee~a~AL~ 76 (79)
T PF15063_consen 41 QLQRLFQKSGDKKAEERARIIWECA---------QDPEEKARALM 76 (79)
T ss_pred HHHHHHHHccchhHHHHHHHHHhhC---------CCHHHHHHHHH
Confidence 3468899999998888877777543 35666666654
No 88
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins. Together with the SOCS proteins, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. CIS1, like SOCS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. CIS1 binds to cytokine receptors at STAT5-docking sites, which prohibits recruitment of STAT5 to the receptor signaling complex and results in the down-regulation of activation by STAT5.
Probab=26.04 E-value=68 Score=16.69 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhCCCC
Q psy8293 88 VADLVKQYFRELPEV 102 (124)
Q Consensus 88 va~~lK~flr~Lp~P 102 (124)
+...||.||++.|-+
T Consensus 26 LP~~L~~yL~~y~~~ 40 (41)
T cd03734 26 LPRRMADYLRQYPFQ 40 (41)
T ss_pred CCHHHHHHHHHCCCC
Confidence 357889999988765
No 89
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=25.58 E-value=57 Score=17.08 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=9.6
Q ss_pred HHHHHhhCCCCC
Q psy8293 92 VKQYFRELPEVL 103 (124)
Q Consensus 92 lK~flr~Lp~PL 103 (124)
||.||++-|-|+
T Consensus 31 Lk~yL~~Y~~~~ 42 (42)
T cd03737 31 IKEFLDQYDAPL 42 (42)
T ss_pred HHHHHHhCCCCC
Confidence 999999887653
No 90
>cd03736 SOCS_SOCS2 SOCS (suppressors of cytokine signaling) box of SOCS2-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS2 has recently been shown to regulate neuronal differentiation by controlling expression of a neurogenic transcription factor, Neurogenin-1. SOCS2 binds to GH receptors and inhibits the activation of STAT5b induced by GH. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=24.84 E-value=74 Score=16.45 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhCCCC
Q psy8293 87 DVADLVKQYFRELPEV 102 (124)
Q Consensus 87 ~va~~lK~flr~Lp~P 102 (124)
-+...||.||.+.|-+
T Consensus 25 pLP~~Lk~yL~~y~~~ 40 (41)
T cd03736 25 PLPTRLKDYLTEYTYH 40 (41)
T ss_pred CCCHHHHHHHHHCCCC
Confidence 4457899999988755
No 91
>KOG1449|consensus
Probab=24.71 E-value=22 Score=29.37 Aligned_cols=78 Identities=18% Similarity=0.019 Sum_probs=52.2
Q ss_pred CcccccchHHHHhhhCCCCcH-HHHHHHHHHHh---cC--CCccCeeecCCChHHHHHHHHHHhcCCCCCC--C-CCCCC
Q psy8293 14 NSVFGVPLLVNIQKTGYALPK-FIISSFEWLIN---NA--SDQIGIFRKPGVKTRIQKLREMADEVDFKLD--E-VDSQQ 84 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~~~vP~-~l~~~~~~l~~---~g--l~~eGifR~~g~~~~i~~l~~~~~~~~~~~~--~-~~~~~ 84 (124)
...||.-|..+....|..||. .+..||..+.. ++ .+..|.++++-+ .+ ..++ . .-..|
T Consensus 207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D------------~g-ae~d~~af~~p~d 273 (670)
T KOG1449|consen 207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVED------------EG-AEVDGEAFRWPSD 273 (670)
T ss_pred CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccc------------cc-ccccccccCCccc
Confidence 566777777666666788999 88888887765 22 344466666443 33 1122 0 12457
Q ss_pred HHHHHHHHHHHHhhCCCCCC
Q psy8293 85 AYDVADLVKQYFRELPEVLL 104 (124)
Q Consensus 85 ~~~va~~lK~flr~Lp~PLl 104 (124)
+..+...++-|.+.+|.|+.
T Consensus 274 i~v~S~d~dp~s~Q~~pp~~ 293 (670)
T KOG1449|consen 274 IVVESWDMDPYSRQLPPPYP 293 (670)
T ss_pred eeeeccccChhhhhcCCCCc
Confidence 88889999999999999954
No 92
>COG2901 Fis Factor for inversion stimulation Fis, transcriptional activator [Transcription / DNA replication, recombination, and repair]
Probab=24.40 E-value=1.6e+02 Score=18.19 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhCCCCCCChHHHHHHHHHh
Q psy8293 86 YDVADLVKQYFRELPEVLLTNKSSETFMSIF 116 (124)
Q Consensus 86 ~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~ 116 (124)
..|...|+.||++|-.-= +.++|+..++..
T Consensus 29 dsV~~~L~~Y~~~L~G~~-v~~lY~mVL~ev 58 (98)
T COG2901 29 DSVKQALKNYFADLNGQD-VNDLYEMVLAEV 58 (98)
T ss_pred HHHHHHHHHHHHHcCCCC-hhhHHHHHHHHH
Confidence 347777888888885543 456666655544
No 93
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=24.35 E-value=2.4e+02 Score=19.26 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHhcCCC--ccCeeecCCChHHHHHHHHHHhcC
Q psy8293 33 PKFIISSFEWLINNASD--QIGIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 33 P~~l~~~~~~l~~~gl~--~eGifR~~g~~~~i~~l~~~~~~~ 73 (124)
-..+.-+.+.|.++|.. .--++++||.-+-.-.++.....+
T Consensus 26 ~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~ 68 (158)
T PRK12419 26 DQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTG 68 (158)
T ss_pred HHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcC
Confidence 36778889999999964 337889999988887777776544
No 94
>PRK10810 anti-sigma28 factor FlgM; Provisional
Probab=23.94 E-value=1.8e+02 Score=18.25 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q psy8293 59 VKTRIQKLREMADEVDFKLDEVDSQQAYDVADLV 92 (124)
Q Consensus 59 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~l 92 (124)
+..+|++||+.+..|...+ |...||.-|
T Consensus 60 d~~KV~~IK~AI~~G~y~v------D~~kIAd~L 87 (98)
T PRK10810 60 NVERVEALKQAIRNGELKM------DTGKIADAL 87 (98)
T ss_pred cHHHHHHHHHHHHcCCccc------CHHHHHHHH
Confidence 6689999999999985444 466666644
No 95
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=23.82 E-value=77 Score=21.06 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 88 VADLVKQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 88 va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
.-+.|-.||+.+-+.-++++....|.++.++
T Consensus 82 ~pGTLN~fL~~~~e~dl~Pevlk~fe~m~~~ 112 (134)
T PF08400_consen 82 KPGTLNDFLTAPDEDDLRPEVLKRFEEMVAQ 112 (134)
T ss_pred CCCcHHHHhhccccccCCHHHHHHHHHHHHH
Confidence 4578889999999999999999999877654
No 96
>PF13113 DUF3970: Protein of unknown function (DUF3970)
Probab=23.75 E-value=87 Score=17.77 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=16.9
Q ss_pred eecCCChHHHHHHHHHHhc
Q psy8293 54 FRKPGVKTRIQKLREMADE 72 (124)
Q Consensus 54 fR~~g~~~~i~~l~~~~~~ 72 (124)
-|++|...++.++.+.|..
T Consensus 4 VRl~G~~eEi~~fi~~~~~ 22 (60)
T PF13113_consen 4 VRLSGTKEEIEEFIKSFEK 22 (60)
T ss_pred EEecCCHHHHHHHHHhhhh
Confidence 4899999999999998876
No 97
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=23.58 E-value=1.4e+02 Score=16.41 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhC--CCCCCCh
Q psy8293 61 TRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFREL--PEVLLTN 106 (124)
Q Consensus 61 ~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~L--p~PLl~~ 106 (124)
..++.|+..++.. ..-+..+|.-+..|..+- .+||++.
T Consensus 6 ~~veqLr~el~~~--------RikvS~a~~~l~~y~e~~~~~Dpll~g 45 (57)
T cd00068 6 KEVEQLRKELSRE--------RLKVSKAAAELLKYCEQNAENDPLLTG 45 (57)
T ss_pred HHHHHHHHHHCCc--------hhhHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 3456666666543 234667777888888777 8888864
No 98
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=23.39 E-value=1.3e+02 Score=16.46 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=20.0
Q ss_pred ccccchHHHHhhhCCCCcHHHHHHHHHHHhcCC
Q psy8293 16 VFGVPLLVNIQKTGYALPKFIISSFEWLINNAS 48 (124)
Q Consensus 16 vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl 48 (124)
.+|++++...+..+..+-..+...++-+.+.|+
T Consensus 18 ~~Gi~~~~~~~~~g~~~~~~~~~~l~~l~~~Gl 50 (66)
T PF06969_consen 18 NEGIDLSEFEQRFGIDFAEEFQKELEELQEDGL 50 (66)
T ss_dssp HSEEEHHHHHHHTT--THHH-HHHHHHHHHTTS
T ss_pred HCCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCC
Confidence 368888888887776554555555666666663
No 99
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=23.34 E-value=1.5e+02 Score=19.76 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHhcCCCccCeeecCCCh-HHHHHHHHHHh
Q psy8293 33 PKFIISSFEWLINNASDQIGIFRKPGVK-TRIQKLREMAD 71 (124)
Q Consensus 33 P~~l~~~~~~l~~~gl~~eGifR~~g~~-~~i~~l~~~~~ 71 (124)
+.-+..+..+|+..|. +.||++|... .-+++|++.++
T Consensus 105 ~~~i~~a~~~L~~aG~--~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 105 DANIERAKKWLKNAGV--KEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred hhhHHHHHHHHHHcCC--CCeEEEECCCCcCHHHHHHHHh
Confidence 4778899999999986 4689997643 45667766653
No 100
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=21.64 E-value=89 Score=17.77 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChH
Q psy8293 62 RIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNK 107 (124)
Q Consensus 62 ~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~ 107 (124)
+++.|+..++.. ..-+-.++.-|..|...-++||+|..
T Consensus 10 ei~~L~~el~~~--------r~~vS~a~~~li~y~~~~~DPll~~~ 47 (68)
T PF00631_consen 10 EIEQLRQELERE--------RIKVSKACKELIEYCESTPDPLLPGP 47 (68)
T ss_dssp HHHHHHHHHTS------------HHHHHHHHHHHHHGTC-HHHHT-
T ss_pred HHHHHHHHHccc--------ceeHHHHHHHHHHHhcCCCCceeCCC
Confidence 445555555442 22466677777788877788877654
No 101
>PF09179 TilS: TilS substrate binding domain; InterPro: IPR015262 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the substrate-binding domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 1NI5_A 3A2K_A.
Probab=21.57 E-value=1.6e+02 Score=16.19 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHh
Q psy8293 81 DSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIF 116 (124)
Q Consensus 81 ~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~ 116 (124)
...++..-..+|+.||.+.-.+..+....+.+.+..
T Consensus 7 ~~l~~~~q~~lLR~wL~~~g~~~ps~~~l~~i~~~l 42 (69)
T PF09179_consen 7 RQLPPARQRRLLRRWLRQLGLPMPSQAHLEQILRQL 42 (69)
T ss_dssp CCS-HHHHHHHHHHHHHHTT-T--HHHHHHHHHHHC
T ss_pred hcCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 355778889999999999977777888888877654
No 102
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=21.21 E-value=2.7e+02 Score=18.78 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHhcCCC--ccCeeecCCChHHHHHHHHHHhcC
Q psy8293 33 PKFIISSFEWLINNASD--QIGIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 33 P~~l~~~~~~l~~~gl~--~eGifR~~g~~~~i~~l~~~~~~~ 73 (124)
-..+..|++.|.++|.. .--+|++||.-+-.-.++....++
T Consensus 28 ~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~~~ 70 (154)
T PRK00061 28 DALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAESG 70 (154)
T ss_pred HHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHHcC
Confidence 36777889999999853 447889999988888777777654
No 103
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.98 E-value=87 Score=24.60 Aligned_cols=55 Identities=11% Similarity=0.043 Sum_probs=41.2
Q ss_pred ccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhc
Q psy8293 18 GVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADE 72 (124)
Q Consensus 18 G~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~ 72 (124)
|.|+.+.++..+.-.|.....++..=|.+|--.+.+-|+.-..+..+++++++-+
T Consensus 107 G~sls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~e~~~~lr~Ki~~ 161 (397)
T COG1459 107 GKSLSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYLEKQAALRKKIKS 161 (397)
T ss_pred CCcHHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777666689999999999998886566666776666777777777653
No 104
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=20.96 E-value=1.5e+02 Score=19.19 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCCCCC-CCCCCC-HHHHHHHHHHHHhh
Q psy8293 61 TRIQKLREMADEVDFKLD-EVDSQQ-AYDVADLVKQYFRE 98 (124)
Q Consensus 61 ~~i~~l~~~~~~~~~~~~-~~~~~~-~~~va~~lK~flr~ 98 (124)
..+..|++...++ .+. +....| .|+=|.+|+.||.+
T Consensus 79 ~~l~~L~~~~~~~--~lTLlyaa~d~~hN~A~VL~~~L~~ 116 (117)
T COG3189 79 QALEDLLDIASHG--PLTLLYAAKDEAHNHAVVLAELLEE 116 (117)
T ss_pred HHHHHHHHHHcCC--CeEEEEeeCchhhchHHHHHHHHhc
Confidence 3667777777664 333 133444 48889999999975
No 105
>PF14278 TetR_C_8: Transcriptional regulator C-terminal region
Probab=20.69 E-value=79 Score=17.46 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHh
Q psy8293 34 KFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD 71 (124)
Q Consensus 34 ~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~ 71 (124)
.++..+++++.+|.--..-+|.-.|+..-.+++++.+.
T Consensus 2 ~~~~~i~~~i~~n~~~~~~ll~~~~~~~f~~~l~~~~~ 39 (77)
T PF14278_consen 2 PFLTEIFEYIYENRDFYKILLSPNGDPNFQERLKELIK 39 (77)
T ss_pred HHHHHHHHHHHHhHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 36778888888875444556677777777777776654
No 106
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=20.61 E-value=72 Score=18.74 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=13.2
Q ss_pred HHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 92 VKQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 92 lK~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
||.+++.|-..--+.+.-..|.+.+.+
T Consensus 2 LK~ii~~Lh~G~~~e~vk~~F~~~~~~ 28 (71)
T PF04282_consen 2 LKEIIKRLHEGEDPEEVKEEFKKLFSD 28 (71)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHCC
Confidence 455555555444444444555544443
No 107
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=20.40 E-value=2.3e+02 Score=18.48 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHhcCCCccCeeecCCCh
Q psy8293 33 PKFIISSFEWLINNASDQIGIFRKPGVK 60 (124)
Q Consensus 33 P~~l~~~~~~l~~~gl~~eGifR~~g~~ 60 (124)
|+++...+.+|.++|.....++=+.-..
T Consensus 4 PqVvTEtl~aL~~~g~~i~ev~lI~T~~ 31 (124)
T TIGR03642 4 PMVITEAIDYLKKKGEPISDVILIYTKD 31 (124)
T ss_pred cccHHHHHHHHHhcCCCCCeEEEEEcCC
Confidence 9999999999999998888877555443
No 108
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=20.19 E-value=3.6e+02 Score=19.71 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHHHhh---CCCCCCChHHHHHHHHHhcc
Q psy8293 59 VKTRIQKLREMADEVDFKLDE-VDSQQAYDVADLVKQYFRE---LPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 59 ~~~~i~~l~~~~~~~~~~~~~-~~~~~~~~va~~lK~flr~---Lp~PLl~~~~~~~~~~~~~~ 118 (124)
|.+.++.||..+-.. .+|+ .+..|++++.=+|+ -||. |=.-|=.++..+..+++.|+
T Consensus 102 SAKvm~~ikavLgaT--KiDLPVDINDPYDlGLLLR-hLRHHSNLLAnIgdP~VreqVLsAMqE 162 (238)
T PF02084_consen 102 SAKVMEDIKAVLGAT--KIDLPVDINDPYDLGLLLR-HLRHHSNLLANIGDPEVREQVLSAMQE 162 (238)
T ss_pred cHHHHHHHHHHhccc--ccccccccCChhhHHHHHH-HHHHHHHHHhhcCCHHHHHHHHHHHhh
Confidence 556778888887553 4553 34568999877664 4443 22223345566666666653
No 109
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=20.18 E-value=3.1e+02 Score=19.09 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCCccC-eeecCCChHHHHHH----HHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCC
Q psy8293 34 KFIISSFEWLINNASDQIG-IFRKPGVKTRIQKL----REMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVL 103 (124)
Q Consensus 34 ~~l~~~~~~l~~~gl~~eG-ifR~~g~~~~i~~l----~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PL 103 (124)
.+--+++..|-++|++.+| |-...|..-.++.+ .+.|-+.-..+|+....|+..+...++.+...=|...
T Consensus 81 H~~Gqsl~aLh~NGid~~grIiGa~GaiPfleNi~~~aV~rFq~qVelVd~ig~eD~~~I~~~I~e~~~kdpga~ 155 (176)
T PF04208_consen 81 HLTGQSLLALHENGIDEDGRIIGAKGAIPFLENIPREAVERFQQQVELVDMIGEEDPEAIQAKIKECISKDPGAF 155 (176)
T ss_pred CcchHHHHHHHHcCCCCCCCCccCCCCcchhhcCCHHHHHHHHHheEEEeeecCCCHHHHHHHHHHHHhcCCccC
Confidence 4556778888999998887 44444443334322 1223222234555567799999999999987766543
No 110
>KOG3870|consensus
Probab=20.17 E-value=1.2e+02 Score=24.12 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=40.9
Q ss_pred CCCcHHHHHHHHHHHhcC---C---CccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCC
Q psy8293 30 YALPKFIISSFEWLINNA---S---DQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVL 103 (124)
Q Consensus 30 ~~vP~~l~~~~~~l~~~g---l---~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PL 103 (124)
...|.++...++.|.++- + ..++..-.---...+++||..+.++..-.. +....+... .-..||..+|++.
T Consensus 31 ~R~P~Ilt~vid~L~~~~s~l~~k~g~~~~~d~k~ii~~l~~Lr~ei~~drpl~p-~~~~~~D~d--~wN~~L~~l~~~~ 107 (434)
T KOG3870|consen 31 DRWPIILTNVIDTLSRDKSDLIEKYGSEVVEDGKQIIKLLSKLRYEIQTDRPLQP-LTGEEPDID--SWNEFLKKLPEAK 107 (434)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCccc-cccCCCCHH--HHHHHHHhCChhh
Confidence 458999999999998752 1 111111111122345566666666633333 333333322 5568899999865
Q ss_pred CCh
Q psy8293 104 LTN 106 (124)
Q Consensus 104 l~~ 106 (124)
.++
T Consensus 108 ~~w 110 (434)
T KOG3870|consen 108 RTW 110 (434)
T ss_pred hhh
Confidence 443
Done!