Query psy8293
Match_columns 124
No_of_seqs 187 out of 1024
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 23:48:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kuq_A RHO GTPase-activating p 100.0 5.1E-32 1.7E-36 192.9 11.4 111 7-119 12-122 (228)
2 2osa_A N-chimaerin; RHO-GAP, G 100.0 4.6E-31 1.6E-35 184.8 9.8 107 12-118 4-112 (202)
3 3byi_A RHO GTPase activating p 100.0 2E-30 6.7E-35 183.0 12.4 102 14-117 17-121 (214)
4 3msx_B RHO GTPase-activating p 100.0 1E-30 3.6E-35 182.8 10.6 103 12-118 8-110 (201)
5 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 2.5E-30 8.7E-35 184.1 11.7 110 6-118 12-124 (229)
6 1tx4_A P50-rhogap; complex (GT 100.0 5.4E-30 1.8E-34 178.9 10.5 102 14-117 6-110 (198)
7 1ow3_A RHO-GTPase-activating p 100.0 2.4E-29 8.3E-34 180.4 10.8 102 14-117 42-146 (242)
8 1pbw_A Rhogap domain, phosphat 100.0 4.4E-30 1.5E-34 181.5 6.7 103 14-118 5-109 (216)
9 2ee4_A RHO GTPase activating p 100.0 2.7E-29 9.2E-34 176.6 10.4 102 14-117 10-112 (209)
10 3fk2_A Glucocorticoid receptor 100.0 1.3E-28 4.4E-33 177.1 10.3 102 14-117 51-153 (246)
11 2ovj_A Mgcracgap, RAC GTPase-a 99.9 5E-28 1.7E-32 169.3 9.1 99 19-118 4-103 (201)
12 2xs6_A Phosphatidylinositol 3- 99.9 3E-28 1E-32 172.0 7.5 96 14-119 20-117 (214)
13 3eap_A RHO GTPase-activating p 99.9 8.4E-28 2.9E-32 175.0 7.3 102 13-118 61-165 (271)
14 1f7c_A Rhogap protein; GTPase 99.9 2.6E-27 8.9E-32 168.8 8.6 105 14-118 16-127 (231)
15 3cxl_A N-chimerin; SH2, RHO-GA 99.9 4E-27 1.4E-31 182.1 9.8 105 14-118 267-373 (463)
16 3qis_A Inositol polyphosphate 99.9 1.9E-25 6.6E-30 168.4 11.5 85 31-118 198-282 (366)
17 3llb_A Uncharacterized protein 71.1 3.6 0.00012 23.7 2.8 46 50-102 7-52 (83)
18 3a8p_A T-lymphoma invasion and 70.5 0.27 9.2E-06 35.0 -2.7 37 30-66 210-246 (263)
19 3lae_A UPF0053 protein HI0107; 66.1 4.2 0.00014 23.3 2.3 46 50-102 7-52 (81)
20 2rk5_A Putative hemolysin; str 61.4 6.1 0.00021 22.8 2.5 45 51-102 7-51 (87)
21 2r2z_A Hemolysin; APC85144, en 60.9 6.5 0.00022 23.0 2.6 46 50-102 14-59 (93)
22 2p3h_A Uncharacterized CBS dom 60.3 6.5 0.00022 23.7 2.5 46 50-102 10-55 (101)
23 2pli_A Uncharacterized protein 60.0 6.3 0.00021 23.0 2.4 46 50-102 16-61 (91)
24 1rp3_B Anti sigma factor FLGM; 58.7 18 0.00062 21.1 4.2 34 58-97 55-88 (88)
25 2p13_A CBS domain; alpha-beta 56.4 8.1 0.00028 22.4 2.5 48 50-102 13-60 (90)
26 2oai_A Hemolysin; PFAM03471, x 51.3 8.4 0.00029 22.6 1.9 49 50-102 16-64 (94)
27 1hqk_A 6,7-dimethyl-8-ribityll 48.3 47 0.0016 21.5 5.3 40 34-73 29-70 (154)
28 1rvv_A Riboflavin synthase; tr 47.2 53 0.0018 21.3 5.4 40 34-73 29-70 (154)
29 1kz1_A 6,7-dimethyl-8-ribityll 41.6 69 0.0024 20.9 5.4 41 33-73 33-76 (159)
30 2p4p_A Hypothetical protein HD 40.5 20 0.00068 20.5 2.4 48 50-102 7-54 (86)
31 2b99_A Riboflavin synthase; lu 36.4 73 0.0025 20.7 4.8 39 35-73 17-56 (156)
32 3e0z_A Protein of unknown func 34.4 65 0.0022 19.7 4.0 62 56-122 43-104 (109)
33 3tbi_A RNA polymerase-associat 33.9 26 0.00089 21.7 2.2 51 14-68 40-90 (115)
34 2xpp_A IWS1, ECU08_0440; trans 31.9 51 0.0018 21.2 3.5 36 86-121 60-96 (145)
35 2obx_A DMRL synthase 1, 6,7-di 28.4 90 0.0031 20.3 4.2 40 34-73 28-69 (157)
36 1di0_A Lumazine synthase; tran 28.1 99 0.0034 20.1 4.4 40 34-73 27-68 (158)
37 1c2y_A Protein (lumazine synth 28.0 1.3E+02 0.0043 19.6 5.1 40 34-73 30-70 (156)
38 2kvu_A MKL/myocardin-like prot 27.6 90 0.0031 17.7 4.4 33 36-73 31-63 (75)
39 2pls_A CBS domain protein; APC 26.1 57 0.0019 18.4 2.7 50 50-102 7-56 (86)
40 3nfq_A Transcription factor IW 25.5 76 0.0026 21.0 3.5 36 86-121 75-111 (170)
41 2nqw_A CBS domain protein; PFA 23.9 49 0.0017 19.0 2.2 51 50-102 13-63 (93)
42 3nq4_A 6,7-dimethyl-8-ribityll 22.8 1.6E+02 0.0055 19.0 5.0 40 34-73 29-71 (156)
43 2c92_A 6,7-dimethyl-8-ribityll 22.8 1.6E+02 0.0056 19.1 4.7 38 34-71 34-71 (160)
44 2k42_B Espfu; WAsp, GBD, autoi 21.9 81 0.0028 15.2 2.3 19 30-48 2-20 (36)
45 1eoq_A GAG polyprotein capsid 21.4 1.3E+02 0.0044 18.0 3.6 32 91-122 47-79 (96)
46 2do1_A Nuclear protein HCC-1; 21.1 1.1E+02 0.0036 16.2 4.3 33 36-73 15-47 (55)
47 3a8n_A TIAM-1, T-lymphoma inva 21.0 8.5 0.00029 27.6 -2.0 33 30-62 210-242 (279)
48 2i0f_A 6,7-dimethyl-8-ribityll 20.5 1.8E+02 0.0062 18.8 4.9 38 34-72 29-66 (157)
49 3iwg_A Acetyltransferase, GNAT 20.4 38 0.0013 23.6 1.3 37 84-122 12-49 (276)
50 1zrj_A E1B-55KDA-associated pr 20.4 1E+02 0.0036 15.9 4.1 31 36-71 15-45 (50)
51 4akl_A Nucleocapsid; viral pro 20.1 27 0.00091 26.5 0.5 77 14-97 210-286 (482)
No 1
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.97 E-value=5.1e-32 Score=192.88 Aligned_cols=111 Identities=51% Similarity=0.811 Sum_probs=101.1
Q ss_pred CCCCCCCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHH
Q psy8293 7 FHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAY 86 (124)
Q Consensus 7 ~~~~~~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 86 (124)
.++.++ +++||++|++++++++..||.+|..|+++|+++|+++|||||++|+..++++|++.+|.+...++ ++..|+|
T Consensus 12 ~~~~~~-~~vFGv~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~-~~~~~~~ 89 (228)
T 3kuq_A 12 ENLYFQ-GSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVN-YEGQSAY 89 (228)
T ss_dssp --CBCT-TSSTTCCHHHHHHHHSSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCC-CTTCCHH
T ss_pred CCCCCC-CCEECCchHHHHHHcCCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCC-cccCCHH
Confidence 344455 89999999999999999999999999999999999999999999999999999999998766777 7788999
Q ss_pred HHHHHHHHHHhhCCCCCCChHHHHHHHHHhccc
Q psy8293 87 DVADLVKQYFRELPEVLLTNKSSETFMSIFQPI 119 (124)
Q Consensus 87 ~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~~ 119 (124)
+||++||.|||+||+||+|.++|+.|+++++..
T Consensus 90 ~va~lLK~fLReLPePLl~~~l~~~~~~~~~~~ 122 (228)
T 3kuq_A 90 DVADMLKQYFRDLPEPLMTNKLSETFLQIYQYV 122 (228)
T ss_dssp HHHHHHHHHHHHSSSCTTCSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999987643
No 2
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.6e-31 Score=184.81 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=94.1
Q ss_pred CCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC--CCCCHHHHH
Q psy8293 12 NNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV--DSQQAYDVA 89 (124)
Q Consensus 12 ~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~--~~~~~~~va 89 (124)
...++||++|++++++++..+|.++..|+++|+++|+++|||||++|+.+++++|++.+|++...+++. ...|+|+||
T Consensus 4 ~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va 83 (202)
T 2osa_A 4 HVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIIT 83 (202)
T ss_dssp ---CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHH
T ss_pred CCCCccCCChHHHHHHcCCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHH
Confidence 347899999999999988889999999999999999999999999999999999999999754444421 235899999
Q ss_pred HHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 90 DLVKQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 90 ~~lK~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
++||.|||+||+||+|.++|+.|+++++.
T Consensus 84 ~lLK~flreLpePLl~~~~~~~~~~~~~~ 112 (202)
T 2osa_A 84 GALKLYFRDLPIPLITYDAYPKFIESAKI 112 (202)
T ss_dssp HHHHHHHHTCSSCSSCTTTHHHHHHHHHC
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHhc
Confidence 99999999999999999999999998753
No 3
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=99.97 E-value=2e-30 Score=183.01 Aligned_cols=102 Identities=29% Similarity=0.442 Sum_probs=94.6
Q ss_pred CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCC---CCHHHHHH
Q psy8293 14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDS---QQAYDVAD 90 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~---~~~~~va~ 90 (124)
.++||++|++++++++..||.++..|+++|+++|+++|||||++|+..++++|++.+|++ ..++ ++. .|+|+||+
T Consensus 17 ~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~-~~~~-~~~~~~~dvh~va~ 94 (214)
T 3byi_A 17 DQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQE-EKLN-LDDSQWEDIHVVTG 94 (214)
T ss_dssp CCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTT-CCCC-TTSGGGCSHHHHHH
T ss_pred CCccCCcHHHHHHHcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcC-CCCC-CCcccccchHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987 4555 332 49999999
Q ss_pred HHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 91 LVKQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 91 ~lK~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
+||.|||+||+||+|.++|+.|+++.+
T Consensus 95 lLK~flreLPePLl~~~l~~~~~~~~~ 121 (214)
T 3byi_A 95 ALKMFFRELPEPLFPYSFFEQFVEAIK 121 (214)
T ss_dssp HHHHHHHHSSSCSSCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999875
No 4
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=182.76 Aligned_cols=103 Identities=18% Similarity=0.411 Sum_probs=94.3
Q ss_pred CCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q psy8293 12 NNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADL 91 (124)
Q Consensus 12 ~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~ 91 (124)
.++++||++|++++++++ +|.++.+|+++|+++|+++|||||++|+...++++++.+|.+ ..++ ++..|+|+||++
T Consensus 8 ~~~~vFG~~L~~~~~~~~--vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~-~~~~-~~~~d~~~va~l 83 (201)
T 3msx_B 8 MPGQLFGISLPNICENDN--LPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSG-VEVH-LDCESIFVIASV 83 (201)
T ss_dssp --CCCTTSCHHHHSGGGC--CCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHT-CCCC-TTSSCHHHHHHH
T ss_pred CCCCeeCCcHHHHhcCCC--CCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccC-CCCC-CCcccHHHHHHH
Confidence 347999999999998754 999999999999999999999999999999999999999998 4566 677899999999
Q ss_pred HHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 92 VKQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 92 lK~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
||.|||+||+||+|.++|+.|+++++.
T Consensus 84 LK~flreLp~pLl~~~l~~~~~~~~~~ 110 (201)
T 3msx_B 84 LKDFLRNIPGSIFSSDLYDHWVSVMDQ 110 (201)
T ss_dssp HHHHHHTSTTTTTTGGGHHHHHHGGGS
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHcc
Confidence 999999999999999999999998754
No 5
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=184.13 Aligned_cols=110 Identities=31% Similarity=0.449 Sum_probs=94.1
Q ss_pred CCCCCCCCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCC---C
Q psy8293 6 KFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVD---S 82 (124)
Q Consensus 6 k~~~~~~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~---~ 82 (124)
+.+..+. +++||++|++++++++..||.+|.+|+++|+++|+ +|||||++|+..++++|++.+|.+ ...++.. .
T Consensus 12 ~~~~~~~-~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~-~~~~~~~~~~~ 88 (229)
T 3iug_A 12 ENLYFQG-ERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSE-HVPDLTKEPYV 88 (229)
T ss_dssp ------C-CCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTT-CCCCTTSTTTT
T ss_pred CCCCCCC-CCeECcchHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcC-CCCCccccccc
Confidence 3444444 89999999999999999999999999999999999 899999999999999999999987 3344111 2
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 83 QQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 83 ~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
.|+|+||++||.|||+||+||+|.++|+.|+++.+.
T Consensus 89 ~dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~ 124 (229)
T 3iug_A 89 QDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSA 124 (229)
T ss_dssp TCHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTS
T ss_pred cchHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHc
Confidence 499999999999999999999999999999998753
No 6
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=99.96 E-value=5.4e-30 Score=178.86 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=93.5
Q ss_pred CcccccchHHHHhhhCC--CCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCC-CCHHHHHH
Q psy8293 14 NSVFGVPLLVNIQKTGY--ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDS-QQAYDVAD 90 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~~--~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~-~~~~~va~ 90 (124)
.++||++|++++++++. .||.++..|+++|+++|+++|||||++|+.++++++++.+|++ ..++ ++. .|+|++|+
T Consensus 6 ~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~-~~~~-~~~~~d~~~~a~ 83 (198)
T 1tx4_A 6 NQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG-LPVD-FDQYNALHLPAV 83 (198)
T ss_dssp TCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTT-CCCC-GGGSSCTHHHHH
T ss_pred CCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCC-CCCC-ccccccchHHHH
Confidence 68999999999988763 7999999999999999999999999999999999999999988 4566 444 48999999
Q ss_pred HHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 91 LVKQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 91 ~lK~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
+||.|||+||+||+|.++|+.|+++.+
T Consensus 84 lLK~flreLpePLi~~~l~~~~~~~~~ 110 (198)
T 1tx4_A 84 ILKTFLRELPEPLLTFDLYPHVVGFLN 110 (198)
T ss_dssp HHHHHHHHSSSCTTCGGGHHHHHTGGG
T ss_pred HHHHHHHHCCCcCCCHHHHHHHHHHHc
Confidence 999999999999999999999998764
No 7
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=99.96 E-value=2.4e-29 Score=180.44 Aligned_cols=102 Identities=25% Similarity=0.358 Sum_probs=93.8
Q ss_pred CcccccchHHHHhhhCC--CCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCC-CCHHHHHH
Q psy8293 14 NSVFGVPLLVNIQKTGY--ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDS-QQAYDVAD 90 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~~--~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~-~~~~~va~ 90 (124)
.++||++|++++++.+. .||.++..|+++|+++|+++|||||++|+.++++++++.+|++ ..++ ++. .|+|++|+
T Consensus 42 ~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~-~~~~-~~~~~dv~~va~ 119 (242)
T 1ow3_A 42 NQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG-LPVD-FDQYNELHLPAV 119 (242)
T ss_dssp TCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTT-CCCC-GGGSSCTHHHHH
T ss_pred CCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcC-CCCC-cccccchHHHHH
Confidence 68999999999988764 7999999999999999999999999999999999999999998 4566 444 48999999
Q ss_pred HHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 91 LVKQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 91 ~lK~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
+||.|||+||+||+|.++|+.|+++.+
T Consensus 120 lLK~flReLPePLl~~~ly~~~~~~~~ 146 (242)
T 1ow3_A 120 ILKTFLRELPEPLLTFDLYPHVVGFLN 146 (242)
T ss_dssp HHHHHHHHSSSCTTCGGGHHHHHTGGG
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHc
Confidence 999999999999999999999998764
No 8
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=99.96 E-value=4.4e-30 Score=181.54 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=88.9
Q ss_pred CcccccchHHHHhhh--CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q psy8293 14 NSVFGVPLLVNIQKT--GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADL 91 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~--~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~ 91 (124)
..+||++|++++++. +..||.+|.+|+++|+++|+++|||||++|+..+ ++|++.+|++...++ +...|+|+||++
T Consensus 5 ~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~-~~~~dv~~va~l 82 (216)
T 1pbw_A 5 VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVD-LEMIDVHVLADA 82 (216)
T ss_dssp -------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCC-GGGBCHHHHHHH
T ss_pred cccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCC-ccccCHHHHHHH
Confidence 579999999999864 3579999999999999999999999999999999 999999998866677 667899999999
Q ss_pred HHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 92 VKQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 92 lK~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
||.|||+||+||+|.++|+.|++++++
T Consensus 83 LK~flReLPePLl~~~ly~~~~~~~~~ 109 (216)
T 1pbw_A 83 FKRYLLDLPNPVIPAAVYSEMISLAPE 109 (216)
T ss_dssp HHHHHHTSSSCSSCHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999863
No 9
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=99.96 E-value=2.7e-29 Score=176.63 Aligned_cols=102 Identities=21% Similarity=0.375 Sum_probs=92.1
Q ss_pred CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC-CCCCHHHHHHHH
Q psy8293 14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV-DSQQAYDVADLV 92 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~-~~~~~~~va~~l 92 (124)
.++||++|++++.. +..||.++.+|+++|+++|+++|||||++|+..++++|++.+|++ ..+++. ...|+|+||++|
T Consensus 10 ~~~FG~~L~~~~~~-~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~-~~~~~~~~~~d~~~va~lL 87 (209)
T 2ee4_A 10 SNYFGMPLQDLVTA-EKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQD-HNINLVSMEVTVNAVAGAL 87 (209)
T ss_dssp CSSSSSCHHHHSCS-SCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHC-TTCCHHHHTCCHHHHHHHH
T ss_pred CCeeCCcHHHHHhc-CCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcC-CCCCcccCCCCHHHHHHHH
Confidence 68999999998875 457999999999999999999999999999999999999999988 345521 246999999999
Q ss_pred HHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 93 KQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 93 K~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|.|||+||+||+|.++|+.|+++++
T Consensus 88 K~flreLPePLi~~~l~~~~~~~~~ 112 (209)
T 2ee4_A 88 KAFFADLPDPLIPYSLHPELLEAAK 112 (209)
T ss_dssp HHHHHHSSSCSSCTTTHHHHHHHHS
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHh
Confidence 9999999999999999999999875
No 10
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.3e-28 Score=177.08 Aligned_cols=102 Identities=25% Similarity=0.438 Sum_probs=92.0
Q ss_pred CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC-CCCCHHHHHHHH
Q psy8293 14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV-DSQQAYDVADLV 92 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~-~~~~~~~va~~l 92 (124)
.++||++|++++.. +..||.+|..|+++|+++|+++|||||++|+..++++|++.+|.+ ..+++. ...|+|+||++|
T Consensus 51 ~~vFGv~L~~~~~~-~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~-~~~~~~~~~~dvh~va~lL 128 (246)
T 3fk2_A 51 SNYFGVPLTTVVTP-EKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQD-HNLDLAEKDFTVNTVAGAM 128 (246)
T ss_dssp CSSTTSCGGGGCCS-SSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHC-TTCCSGGGTCCHHHHHHHH
T ss_pred CCeeCCCHHHHhcC-CCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcC-CCCCcccccCcHHHHHHHH
Confidence 58999999998875 457999999999999999999999999999999999999999988 345522 246999999999
Q ss_pred HHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293 93 KQYFRELPEVLLTNKSSETFMSIFQ 117 (124)
Q Consensus 93 K~flr~Lp~PLl~~~~~~~~~~~~~ 117 (124)
|.|||+||+||+|+++|+.|+++++
T Consensus 129 K~fLReLPePLl~~~l~~~~~~~~~ 153 (246)
T 3fk2_A 129 KSFFSELPDPLVPYNMQIDLVEAHK 153 (246)
T ss_dssp HHHHHHSSSCSSCHHHHHHHHHHTT
T ss_pred HHHHHhCCCccCCHHHHHHHHHHhc
Confidence 9999999999999999999999875
No 11
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=99.95 E-value=5e-28 Score=169.32 Aligned_cols=99 Identities=19% Similarity=0.286 Sum_probs=89.2
Q ss_pred cchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCC-CHHHHHHHHHHHHh
Q psy8293 19 VPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQ-QAYDVADLVKQYFR 97 (124)
Q Consensus 19 ~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~-~~~~va~~lK~flr 97 (124)
-.|++.+..++..||.++.+|+++|+++|+++|||||++|+..++++|++.+|++....+ +... |+|+||++||.|||
T Consensus 4 g~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~-~~~~~d~h~va~lLK~flr 82 (201)
T 2ovj_A 4 GMLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPL-LSKVDDIHAICSLLKDFLR 82 (201)
T ss_dssp CCGGGGCCSSSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCC-GGGCCCHHHHHHHHHHHHH
T ss_pred CcHHHHhcccCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCcc-ccccCCHHHHHHHHHHHHH
Confidence 468888888889999999999999999999999999999999999999999998843333 4444 99999999999999
Q ss_pred hCCCCCCChHHHHHHHHHhcc
Q psy8293 98 ELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 98 ~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
+||+||+|.++|+.|+++++.
T Consensus 83 eLpePLi~~~l~~~~~~~~~~ 103 (201)
T 2ovj_A 83 NLKEPLLTFRLNRAFMEAAEI 103 (201)
T ss_dssp TSSSCTTCTTTHHHHHHHHHC
T ss_pred hCCCCCCCHHHHHHHHHHHhc
Confidence 999999999999999998753
No 12
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=99.95 E-value=3e-28 Score=171.98 Aligned_cols=96 Identities=19% Similarity=0.152 Sum_probs=79.5
Q ss_pred CcccccchHHHHhh--hCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q psy8293 14 NSVFGVPLLVNIQK--TGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADL 91 (124)
Q Consensus 14 ~~vFG~~L~~~~~~--~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~ 91 (124)
.++||++|++++++ ....||.+|..|+++|+++|+++|||||++|+. +++ +...++ ++..|+|+||++
T Consensus 20 ~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~----~~~~~d-l~~~dvh~va~l 89 (214)
T 2xs6_A 20 FQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT----DWSLSD-VDQWDTAALADG 89 (214)
T ss_dssp -----CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC----CCCCTT-GGGCCHHHHHHH
T ss_pred CcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh----ccccCC-CccCCHHHHHHH
Confidence 68999999999984 346799999999999999999999999999998 333 324455 567899999999
Q ss_pred HHHHHhhCCCCCCChHHHHHHHHHhccc
Q psy8293 92 VKQYFRELPEVLLTNKSSETFMSIFQPI 119 (124)
Q Consensus 92 lK~flr~Lp~PLl~~~~~~~~~~~~~~~ 119 (124)
||.|||+||+||+|.++|+.|+++++..
T Consensus 90 LK~flReLPePLi~~~ly~~~i~~~~~~ 117 (214)
T 2xs6_A 90 IKSFLLALPAPLVTPEASAEARRALREA 117 (214)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999998643
No 13
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=99.94 E-value=8.4e-28 Score=174.95 Aligned_cols=102 Identities=29% Similarity=0.471 Sum_probs=80.6
Q ss_pred CCcccccchHHHHhh---hCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHH
Q psy8293 13 NNSVFGVPLLVNIQK---TGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVA 89 (124)
Q Consensus 13 ~~~vFG~~L~~~~~~---~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va 89 (124)
++++||++|+++++. ++..||.+|.+|+.+|++ |+++|||||++|+...+++|++.+|.+... +...++|+||
T Consensus 61 ~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~---~~~~~~~~va 136 (271)
T 3eap_A 61 GGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGC---LSSAPPCDIA 136 (271)
T ss_dssp CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC--------CCCHHHHH
T ss_pred CCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC---cccccHHHHH
Confidence 378999999998764 234599999999999975 799999999999999999999999988433 3467999999
Q ss_pred HHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 90 DLVKQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 90 ~~lK~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
++||.|||+||+||+|+++|+.|+++.+.
T Consensus 137 ~lLK~fLReLPePLl~~~ly~~~~~~~~~ 165 (271)
T 3eap_A 137 GLLKQFFRELPEPILPADLHEALLKAQQL 165 (271)
T ss_dssp HHHHHHHHHSSSCSSCGGGHHHHHHHTTS
T ss_pred HHHHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998753
No 14
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=99.94 E-value=2.6e-27 Score=168.83 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=75.3
Q ss_pred CcccccchHHHHhhhC---CCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHH-HHhcCC-CCCCCC--CCCCHH
Q psy8293 14 NSVFGVPLLVNIQKTG---YALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLRE-MADEVD-FKLDEV--DSQQAY 86 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~---~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~-~~~~~~-~~~~~~--~~~~~~ 86 (124)
.++||+||+..++++. ..+|.+|.+|+++|+++|+++|||||++|+..+++++++ .+|.+. ..+++. ...|+|
T Consensus 16 ~pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh 95 (231)
T 1f7c_A 16 EPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIK 95 (231)
T ss_dssp ---------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHH
T ss_pred CCccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHH
Confidence 5799999998877643 237899999999999999999999999999999999987 477652 345521 247999
Q ss_pred HHHHHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 87 DVADLVKQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 87 ~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
+||++||.|||+||+||+|.++|+.|+++++.
T Consensus 96 ~va~lLK~flReLPePLl~~~ly~~~~~~~~~ 127 (231)
T 1f7c_A 96 TITSALKTYLRMLPGPLMMYQFQRSFIKAAKL 127 (231)
T ss_dssp HHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999998754
No 15
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=99.94 E-value=4e-27 Score=182.14 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=94.7
Q ss_pred CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC--CCCCHHHHHHH
Q psy8293 14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV--DSQQAYDVADL 91 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~--~~~~~~~va~~ 91 (124)
.++||++|+++++.++..||.+|..|+++|+++|+++|||||++|+.+.+++|++.+|++...+++. ...|+|+||++
T Consensus 267 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~l 346 (463)
T 3cxl_A 267 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 346 (463)
T ss_dssp CCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred ccccccccchhhhccCCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhH
Confidence 6899999999999988899999999999999999999999999999999999999999764444421 23589999999
Q ss_pred HHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293 92 VKQYFRELPEVLLTNKSSETFMSIFQP 118 (124)
Q Consensus 92 lK~flr~Lp~PLl~~~~~~~~~~~~~~ 118 (124)
||.|||+||+||+|.++|+.|+++++.
T Consensus 347 LK~flReLPePLi~~~ly~~~~~~~~~ 373 (463)
T 3cxl_A 347 LKLYFRDLPIPLITYDAYPKFIESAKI 373 (463)
T ss_dssp HHHHHHHCSSCSSCTTTHHHHHHHHHC
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999998753
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.93 E-value=1.9e-25 Score=168.44 Aligned_cols=85 Identities=19% Similarity=0.308 Sum_probs=78.1
Q ss_pred CCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHHH
Q psy8293 31 ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSE 110 (124)
Q Consensus 31 ~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~~ 110 (124)
.||.+|..|+++|+++|+++|||||++|+..++++|++.+|.+ ...+ + ..|+|++|++||.|||+||+||+|.++|+
T Consensus 198 ~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~-~~~~-~-~~dvh~va~lLK~fLReLPePLi~~~ly~ 274 (366)
T 3qis_A 198 QVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTS-IPET-I-PGSNHSVAEALLIFLEALPEPVICYELYQ 274 (366)
T ss_dssp SSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHC-CCSS-C-CSCHHHHHHHHHHHHHHCSSCSSCHHHHH
T ss_pred CcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCC-CCCc-c-ccCHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence 6899999999999999999999999999999999999999988 3343 2 34999999999999999999999999999
Q ss_pred HHHHHhcc
Q psy8293 111 TFMSIFQP 118 (124)
Q Consensus 111 ~~~~~~~~ 118 (124)
.|+++.+.
T Consensus 275 ~~~~~~~~ 282 (366)
T 3qis_A 275 RCLDSAYD 282 (366)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhhh
Confidence 99998764
No 17
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=71.06 E-value=3.6 Score=23.69 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=34.2
Q ss_pred ccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293 50 QIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102 (124)
Q Consensus 50 ~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P 102 (124)
.+|-|.++|... +..+.+.++-. +...+..++|+++-.-|..+|+.
T Consensus 7 ~dg~~~v~G~~~-l~dl~~~l~~~------l~~~~~~Tl~G~i~~~lg~iP~~ 52 (83)
T 3llb_A 7 PSGDFIVKALTP-VDAFNDFFGSE------FSDEEFDTVGGLVMSAFGHLPKR 52 (83)
T ss_dssp TTSCEEEETTCB-HHHHHHHHCCC------CCTTTCSBHHHHHHHHHSSCCCT
T ss_pred CCCEEEEEccCC-HHHHHHHhCCC------CCCCCCcCHHHHHHHHhCcCCCC
Confidence 468899999865 66777777543 22346779999999999999864
No 18
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=70.49 E-value=0.27 Score=35.00 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=30.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHH
Q psy8293 30 YALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKL 66 (124)
Q Consensus 30 ~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l 66 (124)
.++|..+..|+.-...+++...||||++|+.+.|...
T Consensus 210 ~~~~~~l~~~~~~~~~~~l~~~g~~~v~~~~~~v~~~ 246 (263)
T 3a8p_A 210 LPNPKSLLAATSRPSKLALGRLGVLSVSSFHALVCSR 246 (263)
T ss_dssp CCCHHHHHTTCCHHHHHHHHHHTCCSHHHHHHHHHHT
T ss_pred ccchHHHHHHhcccccccccccEEEEeccceeeeeec
Confidence 4567999999988888899999999999998866543
No 19
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=66.12 E-value=4.2 Score=23.28 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=33.6
Q ss_pred ccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293 50 QIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102 (124)
Q Consensus 50 ~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P 102 (124)
.+|-|.++|... +..+.+.++-. +...+..++++++-.-|..+|+.
T Consensus 7 ~dg~~~v~g~~~-l~dl~~~l~~~------l~~~~~~Tl~G~i~~~lg~iP~~ 52 (81)
T 3lae_A 7 SDGSMIIDGSAN-LRDLNKMFNWE------LDTEDARTFNGLILEHLEEIPDE 52 (81)
T ss_dssp TTSCEEEETTCB-HHHHHHHHCCC------CCCSSCSBHHHHHHHHCSSCCCT
T ss_pred CCCEEEEEeeCC-HHHHHHHhCCC------CCCCCCccHHHHHHHHhCCCCCC
Confidence 468899999854 66677777543 22346789999999988888853
No 20
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=61.40 E-value=6.1 Score=22.84 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=32.6
Q ss_pred cCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293 51 IGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102 (124)
Q Consensus 51 eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P 102 (124)
+|-|.++|.. .+..+.+.++-. +...+..++|+++-.-|..+|+.
T Consensus 7 dg~~~v~G~~-~l~dl~~~l~~~------l~~~~~dTl~G~v~~~lg~iP~~ 51 (87)
T 2rk5_A 7 DNTYIVLGTM-TLNDFNEYFETD------LESDNVDTIAGFYLTGVGTIPSQ 51 (87)
T ss_dssp TTEEEEETTS-BHHHHHHHHTCC------CCCTTCCBHHHHHHHHHCSCCCS
T ss_pred CCEEEEEccC-CHHHHHHHhCCC------CCCCCcccHHHHHHHHhCcCCCC
Confidence 6789998874 456677777543 22346789999999999998863
No 21
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=60.86 E-value=6.5 Score=22.99 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=33.2
Q ss_pred ccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293 50 QIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102 (124)
Q Consensus 50 ~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P 102 (124)
.+|-|.++|.. .+..+.+.++-. +...+..++|+++-.-|..+|..
T Consensus 14 ~dg~~~v~G~~-~l~dl~~~l~~~------l~~~~~~TlgG~i~~~lg~iP~~ 59 (93)
T 2r2z_A 14 ADNEYLVQGRM-LIDEFNEVFETD------LHMSDVDTMAGYLITALGTIPDE 59 (93)
T ss_dssp ETTEEEEETTS-BHHHHHHHHTCC------CCCTTCCBHHHHHHHHHSSCCCT
T ss_pred CCCEEEEECCC-CHHHHHHHhCCC------CCCCCcccHHHHHHHHhCCCCCC
Confidence 36889999974 456677777543 22345789999999999999864
No 22
>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4
Probab=60.30 E-value=6.5 Score=23.73 Aligned_cols=46 Identities=7% Similarity=0.012 Sum_probs=33.6
Q ss_pred ccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293 50 QIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102 (124)
Q Consensus 50 ~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P 102 (124)
.+|-|++.|.. .+..+.+.++-. +.+.+..++++++-.-|..+|..
T Consensus 10 ~dg~~~v~G~~-~l~dl~~~lg~~------l~~e~~dTlgGli~~~lg~iP~~ 55 (101)
T 2p3h_A 10 SPDKWLIDGDT-PLDEVERAIGYE------LPEGDYETISGLLFDHANALLKT 55 (101)
T ss_dssp ETTEEEEETTC-BHHHHHHHHTSC------CCCSSCCBHHHHHHHHHCSCCCT
T ss_pred CCCEEEEEccC-CHHHHHHHhCCC------CCCCCCccHHHHHHHHhCCCCCC
Confidence 36889999974 456677777543 22346789999999999998864
No 23
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=60.04 E-value=6.3 Score=23.03 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=33.2
Q ss_pred ccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293 50 QIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102 (124)
Q Consensus 50 ~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P 102 (124)
.+|-|.++|.. .+..+.+.++-. +...+..++|+++-.-|..+|..
T Consensus 16 ~dg~~~v~G~~-~l~dl~~~l~~~------l~~~~~dTlgG~i~~~lg~iP~~ 61 (91)
T 2pli_A 16 SSERWRIHAAT-EIEDINTFFGTE------YSSEEADTIGGLVIQELGHLPVR 61 (91)
T ss_dssp ETTEEEEETTC-BHHHHHHHHCCC------CCCSSCCBHHHHHHHHHSSCCCT
T ss_pred CCCEEEEEcCC-CHHHHHHHhCCC------CCCCCCccHHHHHHHHhCCCCCC
Confidence 36889999974 455677777543 22346789999999999998863
No 24
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=58.71 E-value=18 Score=21.12 Aligned_cols=34 Identities=12% Similarity=0.411 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy8293 58 GVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFR 97 (124)
Q Consensus 58 g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr 97 (124)
-+.++|++|++.+..|...+ |+..||.-+-.||+
T Consensus 55 ir~~kV~~iK~aI~~GtY~v------d~~~iA~kml~~~~ 88 (88)
T 1rp3_B 55 DLEKKVKELKEKIEKGEYEV------SDEKVVKGLIEFFT 88 (88)
T ss_dssp SHHHHHHHHHHHHHTTCCCC------CHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCC------CHHHHHHHHHHHhC
Confidence 35689999999999995554 47777776666553
No 25
>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4
Probab=56.44 E-value=8.1 Score=22.44 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=33.2
Q ss_pred ccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293 50 QIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102 (124)
Q Consensus 50 ~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P 102 (124)
.+|-|.++|.. .+..+.+.++-. +. -+..+..++++++-..|..+|..
T Consensus 13 ~dg~~~v~G~~-~l~dl~~~l~~~---l~-~~~~~~~TlgG~i~~~lg~iP~~ 60 (90)
T 2p13_A 13 ADGTWLMDGWI-SIRKASNLLEHD---LV-DEAERYSTLGGYLLWQFGYIPAA 60 (90)
T ss_dssp TTSCEEEETTS-BHHHHHHHHTSC---CC-CTTCCCCBHHHHHHHHHSSCCCT
T ss_pred CCCEEEEECcC-CHHHHHHHHCCC---CC-CcCCCCccHHHHHHHHhCCCCCC
Confidence 36889998874 456677777543 21 00146789999999999998863
No 26
>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*
Probab=51.27 E-value=8.4 Score=22.64 Aligned_cols=49 Identities=27% Similarity=0.425 Sum_probs=32.0
Q ss_pred ccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293 50 QIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102 (124)
Q Consensus 50 ~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P 102 (124)
.+|-|.++|.. .+..+.+.++-. +..-...+..++++++-..|..+|..
T Consensus 16 ~dg~~~v~G~~-~l~dl~~~l~~~---l~~~~~~~~dTlgG~i~~~lg~iP~~ 64 (94)
T 2oai_A 16 EDGSFLIDGTL-PIEELREVLGAE---LPDGEENNYHTLAGMCISYFGRIPHV 64 (94)
T ss_dssp TTSCEEEETTC-BHHHHHHHHTC----------CCCSBHHHHHHHHHSSCCCT
T ss_pred CCCeEEEeccC-CHHHHHHHhCCC---CCcccCCCCccHHHHHHHHhCCCCCC
Confidence 36889998874 456677777543 21000045789999999999999864
No 27
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=48.30 E-value=47 Score=21.54 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCCcc--CeeecCCChHHHHHHHHHHhcC
Q psy8293 34 KFIISSFEWLINNASDQI--GIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 34 ~~l~~~~~~l~~~gl~~e--GifR~~g~~~~i~~l~~~~~~~ 73 (124)
..+.-|++.|.++|...+ -++++||.-+-.-..+....++
T Consensus 29 ~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~ 70 (154)
T 1hqk_A 29 RLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKE 70 (154)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcC
Confidence 677889999999998755 7889999998887777766554
No 28
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=47.20 E-value=53 Score=21.33 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCCcc--CeeecCCChHHHHHHHHHHhcC
Q psy8293 34 KFIISSFEWLINNASDQI--GIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 34 ~~l~~~~~~l~~~gl~~e--GifR~~g~~~~i~~l~~~~~~~ 73 (124)
..+.-|++.|.++|...+ -++++||.-+-.-..+....++
T Consensus 29 ~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~ 70 (154)
T 1rvv_A 29 KLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETK 70 (154)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcC
Confidence 677889999999998755 6889999998887777766654
No 29
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=41.63 E-value=69 Score=20.90 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHh-cCCCccC--eeecCCChHHHHHHHHHHhcC
Q psy8293 33 PKFIISSFEWLIN-NASDQIG--IFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 33 P~~l~~~~~~l~~-~gl~~eG--ifR~~g~~~~i~~l~~~~~~~ 73 (124)
-..+.-|++.|.+ +|...+. ++++||.-+---..+.....+
T Consensus 33 ~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~ 76 (159)
T 1kz1_A 33 EPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARN 76 (159)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcC
Confidence 3678889999999 9987554 899999998877777666544
No 30
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=40.48 E-value=20 Score=20.49 Aligned_cols=48 Identities=6% Similarity=0.164 Sum_probs=33.1
Q ss_pred ccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293 50 QIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102 (124)
Q Consensus 50 ~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P 102 (124)
.+|-|.++|.. .+..+.+.++-. .++ +..+..++|+++-.-|..+|+.
T Consensus 7 ~dg~~~v~G~~-~l~dl~~~l~~~--~l~--~~~~~~Tl~G~i~~~lg~iP~~ 54 (86)
T 2p4p_A 7 NEDSWLIDGAT-PLEDVMRALNIH--TFP--RDENYETIGGFMMYMLRXIPXX 54 (86)
T ss_dssp CCSEEEEETTS-BHHHHHHHTTCC--CSC--CSCSSCBHHHHHHHHHCSCCCT
T ss_pred CCCEEEEEccC-CHHHHHHHhCCC--CCC--cCCCCccHHHHHHHHhCCCCCC
Confidence 46889999974 455666666532 121 1245789999999999998864
No 31
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=36.44 E-value=73 Score=20.75 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCCcc-CeeecCCChHHHHHHHHHHhcC
Q psy8293 35 FIISSFEWLINNASDQI-GIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 35 ~l~~~~~~l~~~gl~~e-GifR~~g~~~~i~~l~~~~~~~ 73 (124)
.+.-+++.|.++|...+ -++++||.-+-.-..+....++
T Consensus 17 Ll~gA~~~L~~~G~~~~i~~~~VPGafEiP~aak~la~~~ 56 (156)
T 2b99_A 17 MASIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLEEE 56 (156)
T ss_dssp CHHHHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHHHhcC
Confidence 45788999999997666 2289999998887777776554
No 32
>3e0z_A Protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: PG4; 1.75A {Eubacterium rectale}
Probab=34.40 E-value=65 Score=19.71 Aligned_cols=62 Identities=15% Similarity=0.039 Sum_probs=41.7
Q ss_pred cCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHhcccccc
Q psy8293 56 KPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPIYMY 122 (124)
Q Consensus 56 ~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~~~~~ 122 (124)
++++.+-+ +|++.++..-.... -++.-.--+.++|+.|. |+-..+.+..+-+.-..++-++.
T Consensus 43 ip~~~~p~-eL~e~L~~~i~~~s-P~de~ek~li~lL~~y~---pdd~~ddQm~EL~~~G~ee~~~w 104 (109)
T 3e0z_A 43 VDADMEPK-QLLEELQKHIDKVS-PADEQEKYLIHLLGNYE---PDDTHDEQTVELFHMGETEEHIW 104 (109)
T ss_dssp CCTTSCHH-HHHHHHHTTGGGCC-CSSHHHHHHHHHHHSCC---CCSCCCHHHHHHHHHHHTCSSTT
T ss_pred CCcccCHH-HHHHHHHHHcCCCC-CchhHHHHHHHHHHhcC---CCcchHHHHHHHHHhccccccce
Confidence 45666666 89999986522222 11222445888998887 78888999888888777766654
No 33
>3tbi_A RNA polymerase-associated protein GP33; transcription accessory protein, transcription; 3.00A {Enterobacteria phage T4}
Probab=33.92 E-value=26 Score=21.66 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=35.8
Q ss_pred CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHH
Q psy8293 14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLRE 68 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~ 68 (124)
++-||..++.++...| =.-++.|+.|+++++++...+=+.-. ..-+++|+.
T Consensus 40 kq~~s~eIE~lV~~~g---msYLEA~~~w~EEnsIe~~~~~K~Ip-~~IiEKIk~ 90 (115)
T 3tbi_A 40 RQENGFIIEKMVEEFG---MSYLEATTAFLEENSIPETQFAKFIP-SGIIEKIQS 90 (115)
T ss_dssp HHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHTCCGGGHHHHSC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC---chHHHHHHHHHHHcCCCHHHhhHhcC-HHHHHHHHH
Confidence 5668888888888777 36789999999999987665444332 344555543
No 34
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=31.95 E-value=51 Score=21.16 Aligned_cols=36 Identities=17% Similarity=0.434 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhCCCCCCCh-HHHHHHHHHhccccc
Q psy8293 86 YDVADLVKQYFRELPEVLLTN-KSSETFMSIFQPIYM 121 (124)
Q Consensus 86 ~~va~~lK~flr~Lp~PLl~~-~~~~~~~~~~~~~~~ 121 (124)
+.+-++++.||.-||+.-+|. .....++++..++|+
T Consensus 60 ~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI 96 (145)
T 2xpp_A 60 EGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI 96 (145)
T ss_dssp TTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC
T ss_pred cCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 446789999999999987765 577888888877774
No 35
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=28.36 E-value=90 Score=20.26 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCcc--CeeecCCChHHHHHHHHHHhcC
Q psy8293 34 KFIISSFEWLINNASDQI--GIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 34 ~~l~~~~~~l~~~gl~~e--GifR~~g~~~~i~~l~~~~~~~ 73 (124)
..+.-|++.|.++|...+ -++++||.-+-.-..+.....+
T Consensus 28 ~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~ 69 (157)
T 2obx_A 28 QCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETG 69 (157)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcC
Confidence 567889999999997654 6889999988777776666543
No 36
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=28.07 E-value=99 Score=20.08 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCCcc--CeeecCCChHHHHHHHHHHhcC
Q psy8293 34 KFIISSFEWLINNASDQI--GIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 34 ~~l~~~~~~l~~~gl~~e--GifR~~g~~~~i~~l~~~~~~~ 73 (124)
..+.-|++.|.++|...+ -++++||.-+---..+....++
T Consensus 27 ~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~ 68 (158)
T 1di0_A 27 EARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTG 68 (158)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcC
Confidence 567889999999997653 6889999998877777666544
No 37
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=27.95 E-value=1.3e+02 Score=19.56 Aligned_cols=40 Identities=8% Similarity=0.158 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCC-ccCeeecCCChHHHHHHHHHHhcC
Q psy8293 34 KFIISSFEWLINNASD-QIGIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 34 ~~l~~~~~~l~~~gl~-~eGifR~~g~~~~i~~l~~~~~~~ 73 (124)
..+.-|.+.|.++|.. .--++++||.-+---..+....++
T Consensus 30 ~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~ 70 (156)
T 1c2y_A 30 RLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSG 70 (156)
T ss_dssp HHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcC
Confidence 6778899999999975 347889999988777777666554
No 38
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=27.61 E-value=90 Score=17.75 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcC
Q psy8293 36 IISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 36 l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~ 73 (124)
|..+-+++.++||.+.|. ..+.|++|++.++..
T Consensus 31 VaeLK~eLk~RGL~~sG~-----KaeLIeRL~~~~~~~ 63 (75)
T 2kvu_A 31 VAELKQELKLRSLPVSGT-----KTELIERLRAYQDQI 63 (75)
T ss_dssp HHHHHHHHHHTTCCCCSC-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCCC-----HHHHHHHHHHHHHcc
Confidence 556778889999887664 335567777776543
No 39
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=26.06 E-value=57 Score=18.42 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=33.3
Q ss_pred ccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293 50 QIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102 (124)
Q Consensus 50 ~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P 102 (124)
.+|-|.++|.. .+..+.+.++-. .+......+..++|+++-.-|..+|..
T Consensus 7 ~dg~~~v~G~~-~l~dl~~~l~~~--~l~~~~~~~~~Tl~G~i~~~lg~iP~~ 56 (86)
T 2pls_A 7 EDGSWLLDGLI-AVPELKDTLGLR--AVPEEEKGVYHTLSGMIMWLLGRLPQT 56 (86)
T ss_dssp TTSCEEEETTC-BHHHHHHHHTCS--CCTTTTSCSCCBHHHHHHHHHTSCCCT
T ss_pred CCCeEEEEccc-CHHHHHHHhCCC--cCCCccCCCcccHHHHHHHHhCCCCCC
Confidence 36889998874 456677777542 022000045789999999999998864
No 40
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=25.48 E-value=76 Score=20.99 Aligned_cols=36 Identities=11% Similarity=0.314 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhCCCCCCCh-HHHHHHHHHhccccc
Q psy8293 86 YDVADLVKQYFRELPEVLLTN-KSSETFMSIFQPIYM 121 (124)
Q Consensus 86 ~~va~~lK~flr~Lp~PLl~~-~~~~~~~~~~~~~~~ 121 (124)
+.+-++++.||.-||+.=+|. ..-..++++..++|+
T Consensus 75 ~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI 111 (170)
T 3nfq_A 75 NNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPV 111 (170)
T ss_dssp TTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC
T ss_pred cchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCC
Confidence 456788999999999887765 788888888877773
No 41
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4
Probab=23.93 E-value=49 Score=19.04 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=32.4
Q ss_pred ccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293 50 QIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102 (124)
Q Consensus 50 ~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P 102 (124)
.+|-|.++|.. .+..+.+.++- +...+.....+..++++++-..|..+|..
T Consensus 13 ~dg~~~v~G~~-~l~dl~~~l~~-~~~~~~~~~~~~~TlgG~i~~~lg~iP~~ 63 (93)
T 2nqw_A 13 GDGSYLFEGKT-SLSDVRHYLDL-PENAFGELGDEVDTLSGLFLEIKQELPHV 63 (93)
T ss_dssp TTSCEEEETTC-BHHHHHHHHTC-CTTTTHHHHTTCSBHHHHHHHHHCSCCCT
T ss_pred CCCEEEEEccc-CHHHHHHHhCC-CcccccccCCCcccHHHHHHHHhCcCCCC
Confidence 36889998874 45567777754 11000000035679999999999998863
No 42
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=22.85 E-value=1.6e+02 Score=19.05 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcC-CCc--cCeeecCCChHHHHHHHHHHhcC
Q psy8293 34 KFIISSFEWLINNA-SDQ--IGIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 34 ~~l~~~~~~l~~~g-l~~--eGifR~~g~~~~i~~l~~~~~~~ 73 (124)
..+.-|.+.|.++| ... --++++||.-+-.-..+....++
T Consensus 29 ~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~ 71 (156)
T 3nq4_A 29 SLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSG 71 (156)
T ss_dssp HHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcC
Confidence 67788999999999 643 35789999988887777776654
No 43
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=22.81 E-value=1.6e+02 Score=19.09 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHh
Q psy8293 34 KFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD 71 (124)
Q Consensus 34 ~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~ 71 (124)
..+.-|++.|.++|...--++++||.-+---..+....
T Consensus 34 ~Ll~gA~~~l~~~G~~~i~v~~VPGafEiP~aak~la~ 71 (160)
T 2c92_A 34 ALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELAR 71 (160)
T ss_dssp HHHHHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCceEEEECCcHHHHHHHHHHHHh
Confidence 67788999999999776788999999877766655543
No 44
>2k42_B Espfu; WAsp, GBD, autoinhibition, cytoplasm, cytoskeleton, disease mutation, phosphoprotein, signaling protein; NMR {Escherichia coli O157}
Probab=21.89 E-value=81 Score=15.22 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHHhcCC
Q psy8293 30 YALPKFIISSFEWLINNAS 48 (124)
Q Consensus 30 ~~vP~~l~~~~~~l~~~gl 48 (124)
.++|.+-+.+.++|..+++
T Consensus 2 ~~LPpIAQaLk~HLAaye~ 20 (36)
T 2k42_B 2 HMLPDVAQRLMQHLAEHGI 20 (36)
T ss_dssp CCCSSHHHHHHHHHHTTTC
T ss_pred CCCcHHHHHHHHHHHHHhh
Confidence 4578888888888887764
No 45
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=21.36 E-value=1.3e+02 Score=17.97 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=22.9
Q ss_pred HHHHHHhhCCCCCCC-hHHHHHHHHHhcccccc
Q psy8293 91 LVKQYFRELPEVLLT-NKSSETFMSIFQPIYMY 122 (124)
Q Consensus 91 ~lK~flr~Lp~PLl~-~~~~~~~~~~~~~~~~~ 122 (124)
-+|..||.|+.|.-| .++.+-..++.+..|.+
T Consensus 47 dCk~iLkal~g~~~tl~em~~yi~~~~d~gP~~ 79 (96)
T 1eoq_A 47 DIQQLIRTAPSTLTTPGEIIKYVLDRQKTAPLT 79 (96)
T ss_dssp HHHHHHHHCCSCCCSHHHHHHHHHHHSCCCC--
T ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHhhChHH
Confidence 378899999999988 45666667776666654
No 46
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=21.09 E-value=1.1e+02 Score=16.24 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcC
Q psy8293 36 IISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEV 73 (124)
Q Consensus 36 l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~ 73 (124)
|..+-+++..+|+.+.|. ...-+++|++.+...
T Consensus 15 V~eLK~~L~~rGL~~~G~-----KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 15 LAELKQECLARGLETKGI-----KQDLIHRLQAYLEEH 47 (55)
T ss_dssp HHHHHHHHHHHTCCCCSC-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCc-----HHHHHHHHHHHHhcC
Confidence 456677888899887772 345667777777654
No 47
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=21.00 E-value=8.5 Score=27.61 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=27.0
Q ss_pred CCCcHHHHHHHHHHHhcCCCccCeeecCCChHH
Q psy8293 30 YALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62 (124)
Q Consensus 30 ~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~ 62 (124)
.++|..|..|+.--...+|..-|||+++|..+.
T Consensus 210 ~~~~~~l~~~~~rpt~~~l~~~gi~~~~g~~~~ 242 (279)
T 3a8n_A 210 LPNPKRLLAFASRPTKVAMGRLGIFSVSSFHAL 242 (279)
T ss_dssp CCCHHHHHHTCCHHHHHHTTTSSTTCTTHHHHT
T ss_pred CccHHHHHHHhcCcchhhHhhCceeeccCchHh
Confidence 567779999988666788999999999887633
No 48
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=20.52 E-value=1.8e+02 Score=18.78 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhc
Q psy8293 34 KFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADE 72 (124)
Q Consensus 34 ~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~ 72 (124)
..+.-|.+.|.++| ..--++++||.-+---..+....+
T Consensus 29 ~Ll~gA~~~l~~~G-~~i~v~~VPGafEiP~aa~~la~~ 66 (157)
T 2i0f_A 29 ALLDGAKAALDEAG-ATYDVVTVPGALEIPATISFALDG 66 (157)
T ss_dssp HHHHHHHHHHHHTT-CEEEEEEESSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCeEEEECCcHHHHHHHHHHHHhh
Confidence 57788999999999 455889999998877766666554
No 49
>3iwg_A Acetyltransferase, GNAT family; structural genomics, APC, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.30A {Colwellia psychrerythraea}
Probab=20.38 E-value=38 Score=23.58 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHhhCCCCCCChHHHHH-HHHHhcccccc
Q psy8293 84 QAYDVADLVKQYFRELPEVLLTNKSSET-FMSIFQPIYMY 122 (124)
Q Consensus 84 ~~~~va~~lK~flr~Lp~PLl~~~~~~~-~~~~~~~~~~~ 122 (124)
+..++..+-..|+++++.|| ..+++. +....+.+-+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~l--d~~~~~~~~~~~~~~~~~ 49 (276)
T 3iwg_A 12 SLSDLTQLKKAYFDSSIVPL--DGMWHFGFAPMAKHFGFY 49 (276)
T ss_dssp CGGGGHHHHHHHHHHCSSCC--CHHHHHTTGGGSEEEEEE
T ss_pred chHHHHHHHHHHHHhcCCCc--hhhHhcCccccceEEEEE
Confidence 56788999999999999999 666665 65555444433
No 50
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.35 E-value=1e+02 Score=15.90 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHh
Q psy8293 36 IISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD 71 (124)
Q Consensus 36 l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~ 71 (124)
|..+-+++..+|+.+.|. ...-|+.|.+.++
T Consensus 15 V~eLK~eLk~RgL~~~G~-----Ka~Li~RL~~~~~ 45 (50)
T 1zrj_A 15 VNELREELQRRGLDTRGL-----KAELAERLQAALS 45 (50)
T ss_dssp HHHHHHHHHHTTCCCCSC-----HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCCCc-----HHHHHHHHHHHHh
Confidence 456677888899877664 2344556665554
No 51
>4akl_A Nucleocapsid; viral protein, bunyaviridae, CCHFV, caspase-3; HET: PGE; 2.10A {Crimean-congo hemorrhagic fever virus} PDB: 3u3i_A
Probab=20.09 E-value=27 Score=26.45 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=50.2
Q ss_pred CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q psy8293 14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVK 93 (124)
Q Consensus 14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK 93 (124)
.-+|..|+.+.-+.....+|.+..-+..-.+..| -++..-....+..|...++..-+.++ .......++.+.|
T Consensus 210 ~vafnpPwgdiNK~g~sG~~l~atg~~k~~e~eG-----~~~~~~~~~~i~~L~~~~~~~kd~ld--~~~a~~~~~~l~k 282 (482)
T 4akl_A 210 IMAFNPPWGDINKSGRSGIALVATGLAKLAETEG-----KGVFDEAKKTVEALNGYLDKHKDEVD--KASADNMVTNLLK 282 (482)
T ss_dssp GGGGSCTTSSTTCBCTTSCBHHHHHHHHHHHHHC-----THHHHHHHHHHHHHHHHHHHTGGGSC--HHHHHHHHHHHHH
T ss_pred eecCCCCccccccccccCCccccchhhhhhhccc-----chhHHHHHHHHHHHHHHHHhcccccc--cccHHHHHHHHHH
Confidence 4578888887766666779999988888777544 34343346778888888876523332 1123566777777
Q ss_pred HHHh
Q psy8293 94 QYFR 97 (124)
Q Consensus 94 ~flr 97 (124)
.|=.
T Consensus 283 ~~a~ 286 (482)
T 4akl_A 283 HVAK 286 (482)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
Done!