RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8293
(124 letters)
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 77.1 bits (189), Expect = 2e-19
Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 2/111 (1%)
Query: 16 VFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREM--ADEV 73
V+ L ++ P + + G++R G I+ ++ D
Sbjct: 2 VYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGE 61
Query: 74 DFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPIYMYHK 124
+ + +K YFR+LP ++T + F+ + +
Sbjct: 62 KADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADER 112
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 196
Score = 67.1 bits (163), Expect = 2e-15
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 14 NSVFGVPL--LVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD 71
N FGV L L +P + + +L +A GIFR+ ++++++ +
Sbjct: 4 NQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 63
Query: 72 EVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
+D + A ++K + RELPE LLT +
Sbjct: 64 M-GLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN 108
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 184
Score = 55.1 bits (132), Expect = 4e-11
Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 2/100 (2%)
Query: 20 PLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE 79
P L P +I E + + ++R + + +LR++ D D +
Sbjct: 2 PDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQS-SSNLAELRQLLDC-DTPSVD 59
Query: 80 VDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPI 119
++ + +AD K+Y +LP ++ +S+ +
Sbjct: 60 LEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEV 99
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 191
Score = 54.0 bits (129), Expect = 1e-10
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 35 FIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADE----VDFKLDEVDSQQAYDVAD 90
I + ++ G++R GV +R+QKL + + + + + + +
Sbjct: 10 IIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITS 69
Query: 91 LVKQYFRELPEVLLTNKSSETFMSIFQPIYM 121
+K Y R LP L+ + +F+ +
Sbjct: 70 ALKTYLRMLPGPLMMYQFQRSFIKAAKLENQ 100
>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId:
9606]}
Length = 124
Score = 26.0 bits (57), Expect = 1.00
Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 5/43 (11%)
Query: 87 DVADLVKQYFRELPEVLLT-----NKSSETFMSIFQPIYMYHK 124
A Q L + S TF+ F+ Y K
Sbjct: 75 AAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKK 117
>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 25.2 bits (55), Expect = 1.5
Identities = 8/41 (19%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 85 AYDVADLVKQYFRELPEVLLT-NKSSETFMSIFQPIYMYHK 124
A L + S+ FMS F Y +
Sbjct: 68 AVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQE 108
>d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA
synthase MvaS {Staphylococcus aureus [TaxId: 1280]}
Length = 166
Score = 25.5 bits (55), Expect = 1.9
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 23 VNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
+ I K + +PK+ + + D G
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEM 41
>d1u6ea1 c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (FabH)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 24.9 bits (53), Expect = 3.1
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 23 VNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREM 69
V + G P+ ++++ E + S I+ + G+KTR +
Sbjct: 13 VGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDE 59
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD,
C-terminal domain {Clostridium aminobutyricum [TaxId:
33953]}
Length = 215
Score = 24.8 bits (54), Expect = 3.3
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 69 MADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102
M E DFK + V + + D ++F P
Sbjct: 120 MPSEADFKSETVVGRDGETIGDFCNKFFAAAPTC 153
>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 126
Score = 24.0 bits (52), Expect = 4.0
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 87 DVADLVKQYFRELPEVLLT-----NKSSETFMSIFQPIYMYHK 124
A Q L V + SETF + F+ +Y +
Sbjct: 76 AAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQ 118
>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa
[TaxId: 2371]}
Length = 87
Score = 23.5 bits (51), Expect = 4.6
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 66 LREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV 102
+ E+ + + +L + + + +A + YF +P V
Sbjct: 21 IEELREVLGAELPDGEENNYHTLAGMCISYFGRIPHV 57
>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 24.1 bits (52), Expect = 6.2
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 11 KNNNSVFGVPLLVN--IQKTGYALPKFIISSFEWLIN--NASDQIGIFRKPGVKTRIQKL 66
+++ FG P L + + + G +F+++ LIN A + F K +TR L
Sbjct: 262 RDDVPFFG-PPLPDPAVFRKGPEFQEFLLTK---LINAEYACYKAEKFAKLEERTRAALL 317
Query: 67 REMADE 72
+ +E
Sbjct: 318 ETLYEE 323
>d1lqya_ d.167.1.1 (A:) Peptide deformylase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 184
Score = 24.0 bits (51), Expect = 6.4
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 66 LREMADEVDFKLDEVDSQQAYDVADLVKQ 94
LR++A+ V E D + + D VK
Sbjct: 15 LRKVAEPVPLPPSEEDKRILQSLLDYVKM 43
>d1lm4a_ d.167.1.1 (A:) Peptide deformylase {Staphylococcus aureus
[TaxId: 1280]}
Length = 194
Score = 24.0 bits (51), Expect = 6.5
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 66 LREMADEVDFKLDEVDSQQAYDVADLVKQYFRE 98
LR+ A E++ L + + + + + + E
Sbjct: 26 LRQKAAELELPLTKEEKETLIAMREFLVNSQDE 58
>d1ylxa1 d.82.5.1 (A:1-100) Hypothetical protein, GK1464 ortholog
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 100
Score = 23.4 bits (50), Expect = 6.7
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 36 IISSFEWLINN-ASDQIGIFRKPGVKTR 62
I + E ++ DQ+GIF + G R
Sbjct: 13 FIDTLEPMMEAYGLDQVGIFEEHGEGNR 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.393
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 452,984
Number of extensions: 19255
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 22
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)