BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8296
(700 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 331 bits (849), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 182/506 (35%), Positives = 277/506 (54%), Gaps = 47/506 (9%)
Query: 35 KAVHGSLLETMPYNND--FCSLVNQVFKEPINGLFYSGYTLLPTPTKAVHGSLFKFTLWF 92
+AV L + + ++ D F S++N + P + + GY
Sbjct: 434 EAVQKLLEQGLRHSQDLAFLSMLNDIAAVPATAMPFRGYA-------------------- 473
Query: 93 RTILNFNPFCPISQLTQPIKRPVWFVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRP 152
+L P Q +RP+WF+ +GMG+QW GM LM FR +I D +P
Sbjct: 474 --VLGGERGGPEVQQVPAGERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKP 531
Query: 153 LGLDIVKIITSDDPTTFDDILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPD 212
GL + +++ S D +TFDDI++SFV++ +IGL ++L +G+ PD
Sbjct: 532 FGLKVSQLLLSTDESTFDDIVHSFVSLTAI--------------QIGLIDLLSCMGLRPD 577
Query: 213 GYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTD-L 271
G +GHSLGE YADGC EA L Y RG K L PG M +VGL++++
Sbjct: 578 GIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKEAHL-PPGAMAAVGLSWEECKQRC 636
Query: 272 PPSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKV 331
PP V ACHNS D TISG Q V ++E L+ + +F + V + +A+HS ++ +AP +
Sbjct: 637 PPGVVPACHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTGGMAFHSYFMEAIAPPL 696
Query: 332 LELFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPE 391
L+ ++ ++ PK RSA+W+S+SIPE +W+S LA+ SSAEY+VNN + V F EA ++PE
Sbjct: 697 LQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWHVPE 756
Query: 392 NAIVIEVAPHGLMQALLRRTTKDGCVNIPLCRRQTESPANFLLAALGQLHMNGLRPNIEA 451
+A+V+E+APH L+QA+L+R K C IPL ++ F LA +G+LH++G+ N A
Sbjct: 757 HAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHRDNLEFFLAGIGRLHLSGIDANPNA 816
Query: 452 LYEPDSFPVPRGTPCLSPCIFWNHEDDWDSGIAPNIQNNE------VTEVDLLNKE-YRA 504
L+ P FP PRGTP +SP I W+H WD A + N + +D ++
Sbjct: 817 LFPPVEFPAPRGTPLISPLIKWDHSLAWDVPAAEDFPNGSGSPSAAIYNIDTSSESPDHY 876
Query: 505 LFSHQVNGVVIPPLSLFLVDVYEKLC 530
L H ++G V+ P + +L V++ L
Sbjct: 877 LVDHTLDGRVLFPATGYLSIVWKTLA 902
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 315 bits (808), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 151/370 (40%), Positives = 224/370 (60%), Gaps = 16/370 (4%)
Query: 112 KRPVWFVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDD 171
KRPVWF+ +GMG+QW GM LM FR +I D+ +PLGL + ++ S D DD
Sbjct: 489 KRPVWFICSGMGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVLDD 548
Query: 172 ILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCF 231
I++SFV++ + +I L ++L ++G++PDG +GHSLGE YADGC
Sbjct: 549 IVSSFVSLTSI--------------QIALIDLLTSLGLQPDGIIGHSLGEVACGYADGCL 594
Query: 232 DIREACLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTD-LPPSVDIACHNSDDNTTISG 290
EA L Y RGY K + PG M +VGL++++ PP + ACHNS D TISG
Sbjct: 595 TQEEAVLSSYWRGYCIKEANV-LPGAMAAVGLSWEECKQRCPPGIVPACHNSKDTVTISG 653
Query: 291 AQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKWI 350
Q + +L+ LK +++F + V + IA+HS ++ +AP +L ++ + +PK RS +W+
Sbjct: 654 PQAAMSEFLQQLKREDVFVKEVRTGGIAFHSYFMESIAPTLLRQLRKVILDPKPRSKRWL 713
Query: 351 SSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPENAIVIEVAPHGLMQALLRR 410
S+SIPE +W LA+ SAEY VNN + V F EA ++P +A+V+E+APH L+QA+L+R
Sbjct: 714 STSIPEAQWQGSLARTFSAEYSVNNLVSPVLFQEALQHVPAHAVVVEIAPHALLQAVLKR 773
Query: 411 TTKDGCVNIPLCRRQTESPANFLLAALGQLHMNGLRPNIEALYEPDSFPVPRGTPCLSPC 470
+ + C IPL ++ F L+ +G+LH+ G+ N L+ P FP PRGTP +SP
Sbjct: 774 SLESSCTIIPLMKKDHRDNLEFFLSNVGRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPH 833
Query: 471 IFWNHEDDWD 480
I W+H WD
Sbjct: 834 IKWDHSQAWD 843
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 308 bits (788), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 164/437 (37%), Positives = 246/437 (56%), Gaps = 40/437 (9%)
Query: 35 KAVHGSLLETMPYNND--FCSLVNQVFKEPINGLFYSGYTLLPTPTKAVHGSLFKFTLWF 92
+AV L + + ++ D F S++N + P + + GY
Sbjct: 34 EAVQKLLEQGLRHSQDLAFLSMLNDIAAVPATAMPFRGYA-------------------- 73
Query: 93 RTILNFNPFCPISQLTQPIKRPVWFVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRP 152
+L P Q +RP+WF+ +GMG+QW GM LM FR +I D +P
Sbjct: 74 --VLGGERGGPEVQQVPAGERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKP 131
Query: 153 LGLDIVKIITSDDPTTFDDILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPD 212
GL + +++ S D +TFDDI++SFV++ +IGL ++L +G+ PD
Sbjct: 132 FGLKVSQLLLSTDESTFDDIVHSFVSLTAI--------------QIGLIDLLSCMGLRPD 177
Query: 213 GYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTD-L 271
G +GHSLGE YADGC EA L Y RG K L PG M +VGL++++
Sbjct: 178 GIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKEAHL-PPGAMAAVGLSWEECKQRC 236
Query: 272 PPSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKV 331
PP V A HNS D TISG Q V ++E L+ + +F + V + +A+HS ++ +AP +
Sbjct: 237 PPGVVPAXHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTGGMAFHSYFMEAIAPPL 296
Query: 332 LELFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPE 391
L+ ++ ++ PK RSA+W+S+SIPE +W+S LA+ SSAEY+VNN + V F EA ++PE
Sbjct: 297 LQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWHVPE 356
Query: 392 NAIVIEVAPHGLMQALLRRTTKDGCVNIPLCRRQTESPANFLLAALGQLHMNGLRPNIEA 451
+A+V+E+APH L+QA+L+R K C IPL ++ F LA +G+LH++G+ N A
Sbjct: 357 HAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHRDNLEFFLAGIGRLHLSGIDANPNA 416
Query: 452 LYEPDSFPVPRGTPCLS 468
L+ P FP PRGTP +S
Sbjct: 417 LFPPVEFPAPRGTPLIS 433
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 298 bits (764), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 159/429 (37%), Positives = 240/429 (55%), Gaps = 40/429 (9%)
Query: 35 KAVHGSLLETMPYNND--FCSLVNQVFKEPINGLFYSGYTLLPTPTKAVHGSLFKFTLWF 92
+AV L + + ++ D F S++N + P + + GY
Sbjct: 34 EAVQKLLEQGLRHSQDLAFLSMLNDIAAVPATAMPFRGYA-------------------- 73
Query: 93 RTILNFNPFCPISQLTQPIKRPVWFVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRP 152
+L P Q +RP+WF+ +GMG+QW GM LM FR +I D +P
Sbjct: 74 --VLGGERGGPEVQQVPAGERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKP 131
Query: 153 LGLDIVKIITSDDPTTFDDILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPD 212
GL + +++ S D +TFDDI++SFV++ +IGL ++L +G+ PD
Sbjct: 132 FGLKVSQLLLSTDESTFDDIVHSFVSLTAI--------------QIGLIDLLSCMGLRPD 177
Query: 213 GYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTD-L 271
G +GHSLGE YADGC EA L Y RG K L PG M +VGL++++
Sbjct: 178 GIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKEAHL-PPGAMAAVGLSWEECKQRC 236
Query: 272 PPSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKV 331
PP V ACHNS D TISG Q V ++E L+ + +F + V + +A+HS ++ +AP +
Sbjct: 237 PPGVVPACHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTGGMAFHSYFMEAIAPPL 296
Query: 332 LELFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPE 391
L+ ++ ++ PK RSA+W+S+SIPE +W+S LA+ SSAEY+VNN + V F EA ++PE
Sbjct: 297 LQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWHVPE 356
Query: 392 NAIVIEVAPHGLMQALLRRTTKDGCVNIPLCRRQTESPANFLLAALGQLHMNGLRPNIEA 451
+A+V+E+APH L+QA+L+R K C IPL ++ F LA +G+LH++G+ N A
Sbjct: 357 HAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHRDNLEFFLAGIGRLHLSGIDANPNA 416
Query: 452 LYEPDSFPV 460
L+ P FP
Sbjct: 417 LFPPVEFPA 425
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 126/305 (41%), Gaps = 28/305 (9%)
Query: 104 ISQLTQPIKRPVWFVYAGMGSQWPGMARELMWFAP-FRQAIFECDRVYRPLGLDIVKIIT 162
+ +T+ R V F++ G GSQW GM EL+ +P F I CD P+
Sbjct: 523 VEGVTEVDGRNVVFLFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPM--------- 573
Query: 163 SDDPTTFDDILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGEN 222
D+L + V +L A+ + L E+ R+ G+EP +GHS GE
Sbjct: 574 --QDWKVSDVLRQAPGAPGLDRVDVVQPVLFAVM-VSLAELWRSYGVEPAAVVGHSQGEI 630
Query: 223 GVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTD-LPPSVD---IA 278
A+ G + +A G + + L G M +V L + + L P D +A
Sbjct: 631 AAAHVAGALTLEDAAK--LVVGRSRLMRSLSGEGGMAAVALGEAAVRERLRPWQDRLSVA 688
Query: 279 CHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQA 338
N + +SG + + E A+ I R ++ + A HS Q++ + ++LE
Sbjct: 689 AVNGPRSVVVSGEPGALRAFSEDCAAEGIRVRDIDVDY-ASHSPQIERVREELLETTGDI 747
Query: 339 VQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPENA--IVI 396
P + + S++ E S A Y N TVRF +A + E+ I
Sbjct: 748 APRPARVT---FHSTV---ESRSMDGTELDARYWYRNLRETVRFADAVTRLAESGYDAFI 801
Query: 397 EVAPH 401
EV+PH
Sbjct: 802 EVSPH 806
>pdb|3TZW|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Orthorhombic Apoform At 2.6 A
pdb|3TZX|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZX|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZY|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZY|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZZ|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
pdb|3TZZ|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
Length = 491
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 154/366 (42%), Gaps = 46/366 (12%)
Query: 114 PVWFVYAGMGSQWPGMAREL-MWFAPFRQAIFECDR-VYRPLGLDIVKIITSDDPTTFDD 171
PVW V AG G+Q M + L + F I + D V LG ++++I DD +
Sbjct: 141 PVW-VLAGFGAQHRKMGKSLYLRNEVFAAWIEKVDALVQDELGYSVLELIL-DDAQDYG- 197
Query: 172 ILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCF 231
I + V I +I L E+LR G +P +G SLGE AY G
Sbjct: 198 IETTQVTIFAI--------------QIALGELLRHHGAKPAAVIGQSLGEAASAYFAGGL 243
Query: 232 DIREA----CLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTDL---PPSVDIACHNSDD 284
+R+A C + G + E LM V + ++ ++ P +++ + +
Sbjct: 244 SLRDATRAICSRSHLMGEGEAMLFGEYIRLMALVEYSADEIREVFSDFPDLEVCVYAAPT 303
Query: 285 NTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKK 344
T I G E V+ L +A+ F R + A H+ Q+ PL L +Q K
Sbjct: 304 QTVIGGPPEQVDAILARAEAEGKFARKFATKG-ASHTSQMDPL----LGELTAELQGIKP 358
Query: 345 RSAK-WISSSIPEEEWNSPLAQ-YSSAEYHVNNFLHTVRFTEAC--AYIPENAIVIEVAP 400
S I S++ E + P + EY H+V FT A + +E+AP
Sbjct: 359 TSPTCGIFSTVHEGRYIKPGGEPIHDVEYWKKGLRHSVYFTHGIRNAVDSGHTTFLELAP 418
Query: 401 H--GLMQALLRRTTKDGCVN----IP-LCRRQTESPANFLLAALGQLHMNGLRPNIEALY 453
+ LMQ L TT D ++ IP L R+Q E + +++ + QL++ G +I L+
Sbjct: 419 NPVALMQVAL--TTADAGLHDAQLIPTLARKQDE--VSSMVSTMAQLYVYGHDLDIRTLF 474
Query: 454 EPDSFP 459
S P
Sbjct: 475 SRASGP 480
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 94/431 (21%), Positives = 168/431 (38%), Gaps = 56/431 (12%)
Query: 54 LVNQVFKEPINGLFYSGYTLLPTPTKAVH-----GSLFKFTLWFRTILNFNPFCPISQLT 108
L + + +EP N L +G+TL + H G + R + + +
Sbjct: 487 LADHLAREPRNSLRDTGFTLATRRSAWEHRAVVVGDRDEALAGLRAVADGRIADRTATGQ 546
Query: 109 QPIKRPVWFVYAGMGSQWPGMARELMWFAP-FRQAIFECDRVYRP-LGLDIVKIITSDDP 166
+R V V+ G G+QW G AR+L+ + F +I +C+R P + + +++ P
Sbjct: 547 ARTRRGVAXVFPGQGAQWQGXARDLLRESQVFADSIRDCERALAPHVDWSLTDLLSGARP 606
Query: 167 TTFDDILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAY 226
D++ + V + L + R+ G+EP +GHS GE A+
Sbjct: 607 LDRVDVVQPALFAVX----------------VSLAALWRSHGVEPAAVVGHSQGEIAAAH 650
Query: 227 ADGCFDIREACLGGYARGYASKV-YKLEKPGLMVSVGLNYKDLTD----LPPSVDIACHN 281
G + +A R S+V +L G S GL + + ++ IA N
Sbjct: 651 VAGALTLEDAAKLVAVR---SRVLRRLGGQGGXASFGLGTEQAAERIGRFAGALSIASVN 707
Query: 282 SDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQN 341
+ ++G ++ + +A+ R + + A HS QV+ L ++ L + A +
Sbjct: 708 GPRSVVVAGESGPLDELIAECEAEAHKARRIPVDY-ASHSPQVESLREEL--LTELAGIS 764
Query: 342 PKKRSAKWISSSIPEEEWNSPLAQYS-SAEYHVNNFLHTVRFTEACAYIPENA--IVIEV 398
P S++ P+ + Y N VRF +A + E +EV
Sbjct: 765 PVSADVALYSTTT-----GQPIDTATXDTAYWYANLREQVRFQDATRQLAEAGFDAFVEV 819
Query: 399 APHGLMQALLRRT------TKDGCVNIPLCRRQTESPANFLLAALGQLHMNGLRPNIEAL 452
+PH ++ + T G + RR A+F ALG+ + G +E
Sbjct: 820 SPHPVLTVGIEATLDSALPADAGACVVGTLRRDRGGLADFHT-ALGEAYAQG----VEVD 874
Query: 453 YEP---DSFPV 460
+ P D+ PV
Sbjct: 875 WSPAFADARPV 885
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase
Length = 286
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 92/226 (40%), Gaps = 48/226 (21%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
+++ G GSQ GM R L F F D V LG I + + DDP D L+
Sbjct: 4 YMFPGQGSQAKGMGRAL--FDAFPALTARADGV---LGYSI-RALCQDDP---DQRLSQ- 53
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDI--- 233
YV L LK+ R PD GHSLGE +A G FD
Sbjct: 54 --TQFTQPALYVVNALSYLKR-------REEEAPPDFLAGHSLGEFSALFAAGVFDFETG 104
Query: 234 -----REACLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTDL-----PPSVDIACHNSD 283
+ L G ARG G+ +GL+ + + +L +VDIA NS
Sbjct: 105 LALVKKRGELMGDARG----------GGMAAVIGLDEERVRELLDQNGATAVDIANLNSP 154
Query: 284 DNTTISGAQEDVEPY---LEILKAKNIFYRVVNSSFIAYHSRQVKP 326
ISGA++++ E AK Y V+ S A+HSR ++P
Sbjct: 155 SQVVISGAKDEIARLQVPFEAAGAKK--YTVLRVS-AAFHSRFMRP 197
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In
Complex With Acetate
Length = 281
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 92/226 (40%), Gaps = 48/226 (21%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
+++ G GSQ GM R L F F D V LG I + + DDP D L+
Sbjct: 4 YMFPGQGSQAKGMGRAL--FDAFPALTARADGV---LGYSI-RALCQDDP---DQRLSQ- 53
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDI--- 233
YV L LK+ R PD GHSLGE +A G FD
Sbjct: 54 --TQFTQPALYVVNALSYLKR-------REEEAPPDFLAGHSLGEFSALFAAGVFDFETG 104
Query: 234 -----REACLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTDL-----PPSVDIACHNSD 283
+ L G ARG G+ +GL+ + + +L +VDIA NS
Sbjct: 105 LALVKKRGELMGDARG----------GGMAAVIGLDEERVRELLDQNGATAVDIANLNSP 154
Query: 284 DNTTISGAQEDVEPY---LEILKAKNIFYRVVNSSFIAYHSRQVKP 326
ISGA++++ E AK Y V+ S A+HSR ++P
Sbjct: 155 SQVVISGAKDEIARLQVPFEAAGAKK--YTVLRVS-AAFHSRFMRP 197
>pdb|4AMO|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 87/204 (42%), Gaps = 14/204 (6%)
Query: 207 VGIEPDGYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSVGLNYK 266
+G P G LGHSLGE G D + ARG A V E P M+S+ +
Sbjct: 168 LGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSVAT-EAPSGMLSLRADLA 226
Query: 267 DLTDLPPSVD--IACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQV 324
+L +A N + + ++G + +++ E + I + S A+HS
Sbjct: 227 AARELAAGTGAVVAVDNGERHVVVAGTRPELDRVAEAARHAGIEATPLAVSH-AFHS--- 282
Query: 325 KPL-APKVLELFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFT 383
PL AP L + A + P +R + ++S++ W A E V VRF
Sbjct: 283 -PLMAPAAEALRRAAGRLPWRRPERPVASTVTGAWW----ADEDPVEVLVRQLTGPVRFR 337
Query: 384 EACAYIPENAIVIEVAPHGLMQAL 407
EA + + +++EV P ++ AL
Sbjct: 338 EALGLL-DADLLVEVGPGRMLSAL 360
>pdb|4AMN|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
pdb|4AMP|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 14/204 (6%)
Query: 207 VGIEPDGYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSVGLNYK 266
+G P G LGHSLGE G D + ARG A E P M+S+ +
Sbjct: 168 LGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSAAT-EAPSGMLSLRADLA 226
Query: 267 DLTDLPPSVD--IACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQV 324
+L +A N + + ++G + +++ E + I + S A+HS
Sbjct: 227 AARELAAGTGAVVAVDNGERHVVVAGTRPELDRVAEAARHAGIEATPLAVSH-AFHS--- 282
Query: 325 KPL-APKVLELFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFT 383
PL AP L + A + P +R + ++S++ W A E V VRF
Sbjct: 283 -PLMAPAAEALRRAAGRLPWRRPERPVASTVTGAWW----ADEDPVEVLVRQLTGPVRFR 337
Query: 384 EACAYIPENAIVIEVAPHGLMQAL 407
EA + + +++EV P ++ AL
Sbjct: 338 EALGLL-DADLLVEVGPGRMLSAL 360
>pdb|4AMM|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 401
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 14/204 (6%)
Query: 207 VGIEPDGYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSVGLNYK 266
+G P G LGHSLGE G D + ARG A E P M+S+ +
Sbjct: 165 LGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSAAT-EAPSGMLSLRADLA 223
Query: 267 DLTDLPPSVD--IACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQV 324
+L +A N + + ++G + +++ E + I + S A+HS
Sbjct: 224 AARELAAGTGAVVAVDNGERHVVVAGTRPELDRVAEAARHAGIEATPLAVSH-AFHS--- 279
Query: 325 KPL-APKVLELFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFT 383
PL AP L + A + P +R + ++S++ W A E V VRF
Sbjct: 280 -PLMAPAAEALRRAAGRLPWRRPERPVASTVTGAWW----ADEDPVEVLVRQLTGPVRFR 334
Query: 384 EACAYIPENAIVIEVAPHGLMQAL 407
EA + + +++EV P ++ AL
Sbjct: 335 EALGLL-DADLLVEVGPGRMLSAL 357
>pdb|3EZO|A Chain A, Crystal Structure Of Acyl-Carrier-Protein S-
Malonyltransferase From Burkholderia Pseudomallei 1710b
Length = 318
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 111/305 (36%), Gaps = 35/305 (11%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
FV+ G GSQ GM A R+ + D LG DI K+I + N+
Sbjct: 13 FVFPGQGSQSVGMLNAFADVAVVRETL---DEASDALGQDIGKLIADGPADELNLTTNTQ 69
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREA 236
++T CY A ++ G G +P GHSLGE A G R+A
Sbjct: 70 PVMLTAAYACYR-----AWQQAG--------GAQPSIVAGHSLGEYTALVAAGAIAFRDA 116
Query: 237 CLGGYARGYASKVYKLEKPGLMVSVGLNYKDLT--------DLPPSVDIACHNSDDNTTI 288
R A + G M ++ L D T V+ N+ I
Sbjct: 117 LPLVRFRAQAMQTAVPVGVGGMAAI-LGLDDDTVRAVCAEASATGVVEAVNFNAPAQVVI 175
Query: 289 SGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLE-LFQQAVQNPKKRSA 347
+G + +E EI K K + +HS +KP + K+ E L V+ PK
Sbjct: 176 AGTKAGIEKACEIAKEKGAKRALPLPVSAPFHSSLLKPASDKLREYLAGVDVKAPKISVV 235
Query: 348 KWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPENAI--VIEVAPHGLMQ 405
I ++ + P A + V VR+ E +I + VIE P ++
Sbjct: 236 NNIDVAVVSD----PAAIK---DALVRQAAGPVRWVECVQHIAREGVTHVIECGPGKVLA 288
Query: 406 ALLRR 410
L +R
Sbjct: 289 GLTKR 293
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
Length = 307
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 40/236 (16%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
F++AG G+Q+ GM R+ P + DR + LG D+ +I +++ D LN
Sbjct: 6 FLFAGQGAQYLGMGRDFYDQYPIVKETI--DRASQVLGYDLRYLIDTEE-----DKLN-- 56
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREA 236
Q Y + A + + +L+ G +PD G SLGE A G D +A
Sbjct: 57 -------QTRYTQPAILA-TSVAIYRLLQEKGYQPDMVAGLSLGEYSALVASGALDFEDA 108
Query: 237 CLGGYARGYASKVYKLEKPGLMVSVGLN------------YKDLTDLPPSVDIACHNSDD 284
RG + G MV+V LN +L + P A +N+
Sbjct: 109 VALVAKRGAYMEEAAPADSGKMVAV-LNTPVEVIEEACQKASELGVVTP----ANYNTPA 163
Query: 285 NTTISGAQEDVEPYLEILK---AKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQ 337
I+G V+ +E+L+ AK + V+ F H+ ++P + K+ E Q
Sbjct: 164 QIVIAGEVVAVDRAVELLQEAGAKRLIPLKVSGPF---HTSLLEPASQKLAETLAQ 216
>pdb|3QAT|A Chain A, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
pdb|3QAT|B Chain B, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
Length = 318
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 115/312 (36%), Gaps = 37/312 (11%)
Query: 117 FVYAGMGSQWPGMARELM-WFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNS 175
F + G GSQ GM + L F R E D DI+ +D T + +
Sbjct: 9 FTFPGQGSQLIGMGKVLTEQFVAARMVFEEVDDALSEKLSDIIFEGPADVLTLTANAQPA 68
Query: 176 FVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIRE 235
+A+ ++ ++++GL V + GHSLGE A G F + +
Sbjct: 69 LMAVSMA--------VIRVMEQLGLN-----VEKKVKFVAGHSLGEYSALCAAGTFSLTD 115
Query: 236 ACLGGYARGYASKVYKLEKPGLMVS-VGLNYKDLTDLPPSV------DIACHNSDDNTTI 288
RG A + G M + +GL+ KD+ ++ V IA N I
Sbjct: 116 TARLLRIRGNAMQAAVAVGEGSMAALIGLDEKDVEEICEIVAEEGLCQIANDNGGGQIVI 175
Query: 289 SGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLA----PKVLELFQQAVQNPKK 344
SG + VE +E+ K V+ +HS ++P A +L + + A P
Sbjct: 176 SGEAKAVETAVEVASQKGAKRAVLLPVSAPFHSALMQPAANAMKNALLTVNKTAPIVPLI 235
Query: 345 RSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPENAI--VIEVAPHG 402
+ I S PE V VR+ E +I N + + E+
Sbjct: 236 ANVSVIPESDPER----------IVSLLVQQVTGRVRWRETIEWISANGVNTLFEIGSGK 285
Query: 403 LMQALLRRTTKD 414
++ L RR KD
Sbjct: 286 VLTGLARRINKD 297
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus
Length = 316
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 127/314 (40%), Gaps = 46/314 (14%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
++ G G+Q GMA++L F QA + L DI++ + +D+ + N+
Sbjct: 14 IIFPGQGAQKVGMAQDL--FNNNDQATEILTSAAKTLDFDILETMFTDEEGKLGETENTQ 71
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREA 236
A++T + + LL ALK + PD +GHSLGE A +A
Sbjct: 72 PALLT-----HSSALLAALKNL-----------NPDFTMGHSLGEYSSLVAADVLSFEDA 115
Query: 237 CLGGYARGY-ASKVYKLEKPGLMVSVGLNYKDLTDLPPSVDIACHNSDDNTTISGAQEDV 295
RG ++ + + +GL++ + ++ S+ S D+ I A +
Sbjct: 116 VKIVRKRGQLMAQAFPTGVGSMAAVLGLDFDKVDEICKSL------SSDDKIIEPANINC 169
Query: 296 EPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKWISSSIP 355
+ + K + +V + +++V PLA V F ++ K + SS I
Sbjct: 170 PGQIVVSGHKALIDELVEKG-KSLGAKRVMPLA--VSGPFHSSLM---KVIEEDFSSYIN 223
Query: 356 EEEWNS---PLAQYSSAEYH----------VNNFLHTVRFTEACAYIPENAI--VIEVAP 400
+ EW P+ Q +A+ V V+F + ++ + + IE+ P
Sbjct: 224 QFEWRDAKFPVVQNVNAQGETDKEVIKSNMVKQLYSPVQFINSTEWLIDQGVDHFIEIGP 283
Query: 401 HGLMQALLRRTTKD 414
++ L+++ +D
Sbjct: 284 GKVLSGLIKKINRD 297
>pdb|2H1Y|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
pdb|2H1Y|B Chain B, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
Length = 321
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 100/234 (42%), Gaps = 26/234 (11%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNS- 175
++ G GSQ GM + + +FE R L +D+ K + ++ +
Sbjct: 17 LLFPGQGSQCIGMGKSFYEGHTLAKELFE--RASNALKVDMKKTLFEENELLKESAYTQP 74
Query: 176 FVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIRE 235
+ +V+ Y+ L + G G++P LGHSLGE G D +
Sbjct: 75 AIYLVS-----YIAYQLLNKQANG--------GLKPVFALGHSLGEVSAVSLSGALDFEK 121
Query: 236 ACLGGYARGYASKVYKLEK-PGLMVSVGLNYKDLTDL---PPSVDIACHNSDDNTTISGA 291
A + RG + K +MV +G++ + L L +V A N ++G
Sbjct: 122 ALKLTHQRGKMMQEACANKDASMMVVLGVSEESLLSLCQRTKNVWCANFNGGMQVVLAGV 181
Query: 292 QED---VEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNP 342
++D +EP L+ + AK + + ++ +A H ++P+ K EL ++++++
Sbjct: 182 KDDLKALEPTLKEMGAKRVVFLEMS---VASHCPFLEPMIFKFQELLEKSLKDK 232
>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein
Transacylase (Fabd) From Coxiella Burnetii
Length = 316
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 117/321 (36%), Gaps = 58/321 (18%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSD-----DPTTFDD 171
FV+ G GSQ G EL P F+ + L D+ ++ D T F
Sbjct: 10 FVFPGQGSQHLGXLAELGLQQPIVLETFQ--QASSALAYDLWALVQHGPQERLDQTQFTQ 67
Query: 172 --ILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADG 229
+L + VAI C + LG G +P GHSLGE G
Sbjct: 68 PALLTADVAIFRCWEA------LG--------------GPKPQVXAGHSLGEYAALVCAG 107
Query: 230 CFDIREACLGGYARG-YASKVYKLEKPGLMVSVGLNYKDLTD------LPPSVDIACHNS 282
EA RG Y + + + +GLN ++ L V A NS
Sbjct: 108 ALKFEEAVKLVEKRGQYXQEAVPVGEGAXGAIIGLNEAEIESICENAALGQVVQPANLNS 167
Query: 283 DDNTTISGAQEDVEPYLEILKAK--NIFYRVVNSSFIAYHSRQVKPLAPKVLE-LFQQAV 339
D T ISG E V+ L K + I R+ S + H +P A ++ + + + ++
Sbjct: 168 TDQTVISGHSEAVDRALNXAKTEGAKIAKRIPVS--VPSHCPLXQPAADRLAQDIAKISI 225
Query: 340 QNPKKRSAKWISSSIPEEEWNSPLAQYSSAEY----HVNNFLHTVRFTEACAYIPENAIV 395
+PK +P N + ++ A + + VR+ E YI E I
Sbjct: 226 DSPK----------VPVIH-NVDVVDHNEANIIRGALIKQLVRPVRWVETIKYIEEQGIK 274
Query: 396 I--EVAPHGLMQALLRRTTKD 414
+ E P + L++R +
Sbjct: 275 VFXECGPDNKLAGLIKRIDRQ 295
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 35/112 (31%)
Query: 591 VPVFPSMLREFIMSTNQISNLNPGCHAQI----VYNGNLMVYLDTILKIKVFLELSEDGV 646
+P+ PS L+E +S NQ+++L P +++ YN L +
Sbjct: 176 LPMLPSGLQELSVSDNQLASL-PTLPSELYKLWAYNNRLT------------------SL 216
Query: 647 PVFPSMLREFIMSTNQISNLNPVFLELSEDEVPVFPSMLREFIMSTKHISNL 698
P PS L+E I+S N++++L PV PS L+E ++S +++L
Sbjct: 217 PALPSGLKELIVSGNRLTSL------------PVLPSELKELMVSGNRLTSL 256
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 17/123 (13%)
Query: 591 VPVFPSMLREFIMSTNQISNLN---PGCHAQIVYNGNLMVYL----DTILKIKVFLELSE 643
+P P LR +S NQ+++L PG +++ N + +L + K+ +F
Sbjct: 76 LPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFS-NPLTHLPALPSGLCKLWIFGN-QL 133
Query: 644 DGVPVFPSMLREFIMSTNQISNLNPVFLELSE--------DEVPVFPSMLREFIMSTKHI 695
+PV P L+E +S NQ+++L + EL + +P+ PS L+E +S +
Sbjct: 134 TSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL 193
Query: 696 SNL 698
++L
Sbjct: 194 ASL 196
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 38/231 (16%)
Query: 115 VWFVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILN 174
+ F++AG G+Q+ GM +E +F F ++ R LG+D+ ++ +D +
Sbjct: 4 LGFLFAGQGAQYVGMGKE--FFDNFEESKEVFKRSSEALGIDMEELCFNDPEGLLNKTEF 61
Query: 175 SFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIR 234
+ AI+T + +L AL K+G+ + G SLGE G +
Sbjct: 62 TQPAIITTNMA-----ILTALDKLGVKSHISC---------GLSLGEYSALIHSGAINFE 107
Query: 235 EACLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTDLPPSVDI-------------ACHN 281
+ RG + E G MV+V L P VD A +N
Sbjct: 108 DGVKLVKKRGKFMQEAVAEGIGGMVAV------LRMTPEQVDEIIEKSSPYGIVEGANYN 161
Query: 282 SDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIA-YHSRQVKPLAPKV 331
S ISG +E +E + K + R + A +H ++P A K+
Sbjct: 162 SPGQIVISGELVALEKAMEFI--KEVGGRAIKLPVSAPFHCSMLQPAAEKL 210
>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Burkholderia Pseudomallei Using Dried
Seaweed As Nucleant Or Protease
Length = 394
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 86/226 (38%), Gaps = 48/226 (21%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDP------TTFD 170
F++ G GSQ GM L F F + D V LG I + + DDP T F
Sbjct: 9 FMFPGQGSQAKGMGGAL--FDRFADLTAQADAV---LGYSI-RALCVDDPRDELGRTQFT 62
Query: 171 DILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGC 230
V +T + C + G PD GHSLGE A GC
Sbjct: 63 QPALYVVNALTYYAKCEDS------------------GETPDFLAGHSLGEFNALLAAGC 104
Query: 231 FDIREACLGGYARGYASKVYKLEKPGLMVSV----------GLNYKDLTDLPPSVDIACH 280
FD E L AR +++ + G M ++ L+ L D IA
Sbjct: 105 FDF-ETGLKLVAR--RAELMSQARDGAMAAIVNASREQIERTLDEHGLVD----TAIAND 157
Query: 281 NSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKP 326
N+ ISG ++ + + + Y +N+S A+HS+ ++P
Sbjct: 158 NTPSQLVISGPAHEIARAEALFQHDRVRYLRLNTSG-AFHSKFMRP 202
>pdb|2CUY|A Chain A, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
pdb|2CUY|B Chain B, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
Length = 305
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 8/146 (5%)
Query: 204 LRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGGYARG-YASKVYKLEKPGLMVSVG 262
L A G P GHSLGE A G ++ +A RG Y + + + + +
Sbjct: 75 LEAGGKPPALAAGHSLGEWTAHVAAGTLELEDALRLVRLRGRYMQEAVPVGEGAMAAVLK 134
Query: 263 LNYKDLT---DLPPSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIA- 318
L +++ + V+IA N+ + T ISG ++ VE E LK + RVV A
Sbjct: 135 LPLEEIQKALEGLEGVEIANLNAPEQTVISGRRQAVEEAAERLKERR--ARVVFLPVSAP 192
Query: 319 YHSRQVKPLAPKVLE-LFQQAVQNPK 343
+HS + P ++ E L Q ++ P+
Sbjct: 193 FHSSLMAPARKRLAEDLAQVPLRRPR 218
>pdb|3KZA|A Chain A, Crystal Structure Of Gyuba, A Patched Chimera Of
B-Lactglobulin
pdb|3KZA|B Chain B, Crystal Structure Of Gyuba, A Patched Chimera Of
B-Lactglobulin
Length = 162
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 400 PHGLMQALLRRTTKDGCVNIPLCRRQTESPANFLLAALGQ 439
P G ++ LL++ GC + +TESPA F + AL +
Sbjct: 50 PEGDLEILLQKWENKGCAQKKIIAEKTESPAEFKIDALDE 89
>pdb|2EB0|A Chain A, Crystal Structure Of Methanococcus Jannaschii Putative
Family Ii Inorganic Pyrophosphatase
pdb|2EB0|B Chain B, Crystal Structure Of Methanococcus Jannaschii Putative
Family Ii Inorganic Pyrophosphatase
Length = 307
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 34/233 (14%)
Query: 136 FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDIL-NSFVAIVTCHQGCYVNRLLGA 194
F + + E + + G +I+ + S+ +FDD+ +AI+ H
Sbjct: 41 FVLRKFGVMEPELIESAKGKEIILVDHSEKSQSFDDLEEGKLIAIIDHH----------- 89
Query: 195 LKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEK 254
K+GLT EP Y +G A+ F +GG K K +
Sbjct: 90 --KVGLTTT------EPILYYAKPVGSTATVIAELYFKDAIDLIGG-----KKKELKPDL 136
Query: 255 PGLMVSVGLNYKDLTDLPPSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYR---- 310
GL++S ++ L P + D+ + I+G E +EILKAK++ +
Sbjct: 137 AGLLLSAIISDTVLFKSPTTTDLDKEMAKKLAEIAGISNIEEFGMEILKAKSVVGKLKPE 196
Query: 311 -VVNSSF--IAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKWISSSIPEEEWN 360
++N F ++ ++V +V+++ + V++ K+ K + + E ++
Sbjct: 197 EIINMDFKNFDFNGKKVGIGQVEVIDVSE--VESKKEDIYKLLEEKLKNEGYD 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,931,312
Number of Sequences: 62578
Number of extensions: 963958
Number of successful extensions: 2231
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2193
Number of HSP's gapped (non-prelim): 28
length of query: 700
length of database: 14,973,337
effective HSP length: 106
effective length of query: 594
effective length of database: 8,340,069
effective search space: 4954000986
effective search space used: 4954000986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)