Query psy8296
Match_columns 700
No_of_seqs 422 out of 3029
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 23:51:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1202|consensus 100.0 3.1E-85 6.7E-90 726.0 43.2 589 24-661 430-1062(2376)
2 PF00698 Acyl_transf_1: Acyl t 100.0 5.5E-63 1.2E-67 528.6 23.6 308 116-447 1-318 (318)
3 COG3321 Polyketide synthase mo 100.0 4.2E-60 9.1E-65 568.0 29.4 467 25-532 440-938 (1061)
4 TIGR02813 omega_3_PfaA polyket 100.0 6.3E-57 1.4E-61 570.5 37.4 403 24-454 478-925 (2582)
5 TIGR02816 pfaB_fam PfaB family 100.0 8.5E-56 1.8E-60 491.3 27.6 316 112-455 180-538 (538)
6 TIGR00128 fabD malonyl CoA-acy 100.0 1.1E-52 2.5E-57 443.6 27.3 276 114-413 2-288 (290)
7 smart00827 PKS_AT Acyl transfe 100.0 1.4E-51 3E-56 437.1 29.5 283 119-423 1-296 (298)
8 PLN02752 [acyl-carrier protein 100.0 2.4E-51 5.1E-56 442.9 27.5 280 109-413 34-334 (343)
9 TIGR03131 malonate_mdcH malona 100.0 2.2E-51 4.8E-56 434.8 26.6 272 115-414 1-278 (295)
10 COG0331 FabD (acyl-carrier-pro 100.0 2E-49 4.4E-54 413.9 20.3 278 113-414 2-292 (310)
11 KOG2926|consensus 100.0 1.4E-39 3E-44 328.2 17.5 277 113-413 62-361 (386)
12 PF14765 PS-DH: Polyketide syn 99.7 1.2E-16 2.6E-21 169.0 13.5 157 490-660 15-241 (295)
13 smart00826 PKS_DH PKS_DH. 98.3 2E-06 4.3E-11 81.9 9.3 104 490-597 15-167 (167)
14 TIGR02813 omega_3_PfaA polyket 97.8 6.6E-05 1.4E-09 98.6 10.0 156 493-664 2299-2531(2582)
15 cd07198 Patatin Patatin-like p 87.8 1.3 2.7E-05 42.9 6.3 43 198-240 14-56 (172)
16 cd07205 Pat_PNPLA6_PNPLA7_NTE1 82.7 2.7 5.8E-05 40.7 5.9 44 198-241 16-59 (175)
17 cd07207 Pat_ExoU_VipD_like Exo 82.5 2.9 6.2E-05 41.1 6.1 44 198-241 15-58 (194)
18 COG1752 RssA Predicted esteras 81.2 3.1 6.7E-05 44.3 6.2 41 198-238 27-67 (306)
19 cd07209 Pat_hypo_Ecoli_Z1214_l 80.9 3.1 6.7E-05 41.9 5.7 35 198-232 14-48 (215)
20 cd07229 Pat_TGL3_like Triacylg 80.1 3.2 6.9E-05 45.6 5.8 43 198-241 99-141 (391)
21 cd07227 Pat_Fungal_NTE1 Fungal 80.0 3.8 8.2E-05 42.8 6.2 40 198-237 26-65 (269)
22 cd07225 Pat_PNPLA6_PNPLA7 Pata 79.9 3.9 8.5E-05 43.6 6.4 42 198-239 31-72 (306)
23 cd07210 Pat_hypo_W_succinogene 79.7 4.1 8.9E-05 41.2 6.2 43 198-240 16-58 (221)
24 TIGR03101 hydr2_PEP hydrolase, 76.8 11 0.00024 39.3 8.5 30 199-228 88-117 (266)
25 cd07228 Pat_NTE_like_bacteria 75.8 5.7 0.00012 38.5 5.7 39 198-236 16-54 (175)
26 PRK10279 hypothetical protein; 72.0 4.5 9.8E-05 43.0 4.2 33 198-230 21-54 (300)
27 PRK11126 2-succinyl-6-hydroxy- 71.9 3.8 8.2E-05 41.2 3.6 33 199-231 55-87 (242)
28 cd07231 Pat_SDP1-like Sugar-De 70.8 8.7 0.00019 40.9 5.9 42 198-240 84-125 (323)
29 cd07224 Pat_like Patatin-like 70.7 11 0.00023 38.5 6.6 45 198-242 15-61 (233)
30 TIGR03695 menH_SHCHC 2-succiny 69.5 16 0.00035 35.8 7.5 31 200-230 60-90 (251)
31 cd07206 Pat_TGL3-4-5_SDP1 Tria 69.1 10 0.00022 40.2 6.0 32 198-229 85-116 (298)
32 cd00493 FabA_FabZ FabA/Z, beta 67.7 5.1 0.00011 36.2 3.2 59 494-554 24-90 (131)
33 cd07218 Pat_iPLA2 Calcium-inde 67.3 13 0.00027 38.4 6.2 43 198-240 16-60 (245)
34 cd07232 Pat_PLPL Patain-like p 66.5 11 0.00023 41.9 5.9 42 198-240 83-124 (407)
35 TIGR03056 bchO_mg_che_rel puta 64.4 6.3 0.00014 40.3 3.4 30 199-228 84-113 (278)
36 PRK13604 luxD acyl transferase 64.3 24 0.00051 37.6 7.7 31 199-229 97-127 (307)
37 cd07230 Pat_TGL4-5_like Triacy 64.2 13 0.00028 41.6 6.0 42 198-240 89-130 (421)
38 TIGR02240 PHA_depoly_arom poly 62.8 7.6 0.00016 40.2 3.7 29 201-229 82-110 (276)
39 cd07204 Pat_PNPLA_like Patatin 62.2 19 0.00041 37.0 6.4 44 198-241 15-62 (243)
40 PLN02824 hydrolase, alpha/beta 61.8 8 0.00017 40.4 3.7 31 198-228 90-120 (294)
41 cd07221 Pat_PNPLA3 Patatin-lik 60.9 21 0.00045 37.0 6.4 44 198-241 16-63 (252)
42 cd07220 Pat_PNPLA2 Patatin-lik 60.4 21 0.00046 36.8 6.4 43 198-240 20-66 (249)
43 cd01288 FabZ FabZ is a 17kD be 58.8 10 0.00022 34.4 3.4 61 493-555 24-90 (131)
44 PRK00870 haloalkane dehalogena 58.3 10 0.00022 39.9 3.7 29 200-228 105-133 (302)
45 cd07208 Pat_hypo_Ecoli_yjju_li 57.9 12 0.00026 38.8 4.2 34 198-231 14-49 (266)
46 PF09752 DUF2048: Uncharacteri 57.8 33 0.00071 37.1 7.3 101 111-229 90-194 (348)
47 PRK03592 haloalkane dehalogena 57.7 10 0.00023 39.5 3.7 29 200-228 83-111 (295)
48 PF07977 FabA: FabA-like domai 56.5 6.4 0.00014 36.4 1.7 60 493-554 29-98 (138)
49 PRK11071 esterase YqiA; Provis 56.4 12 0.00027 36.7 3.8 31 200-230 51-81 (190)
50 PF12697 Abhydrolase_6: Alpha/ 56.1 13 0.00029 35.8 3.9 30 199-228 55-84 (228)
51 cd07219 Pat_PNPLA1 Patatin-lik 54.2 28 0.00061 38.1 6.3 44 198-241 28-75 (382)
52 PRK08775 homoserine O-acetyltr 54.2 13 0.00029 40.0 3.9 31 199-229 126-157 (343)
53 PLN02965 Probable pheophorbida 52.6 13 0.00028 38.0 3.3 29 200-228 61-90 (255)
54 TIGR03343 biphenyl_bphD 2-hydr 51.5 14 0.00029 38.1 3.3 30 200-229 91-120 (282)
55 PF06057 VirJ: Bacterial virul 50.2 41 0.0009 33.1 6.1 36 200-235 58-93 (192)
56 cd07212 Pat_PNPLA9 Patatin-lik 49.3 40 0.00087 36.0 6.5 47 198-244 15-66 (312)
57 PLN02679 hydrolase, alpha/beta 49.2 16 0.00036 39.6 3.7 28 200-227 145-172 (360)
58 TIGR01392 homoserO_Ac_trn homo 49.1 17 0.00037 39.2 3.8 30 199-228 115-145 (351)
59 cd07223 Pat_PNPLA5-mammals Pat 49.1 35 0.00076 37.4 5.9 46 198-243 25-74 (405)
60 TIGR01250 pro_imino_pep_2 prol 48.2 17 0.00038 36.7 3.5 30 200-229 86-115 (288)
61 PRK10349 carboxylesterase BioH 47.5 20 0.00043 36.4 3.8 27 202-228 66-92 (256)
62 PF07819 PGAP1: PGAP1-like pro 47.4 56 0.0012 33.1 7.0 21 208-228 83-103 (225)
63 cd07222 Pat_PNPLA4 Patatin-lik 46.3 26 0.00056 36.1 4.4 32 198-229 15-50 (246)
64 PRK07581 hypothetical protein; 46.2 20 0.00043 38.4 3.7 26 203-228 116-142 (339)
65 PLN02578 hydrolase 45.5 20 0.00044 38.8 3.7 30 200-229 142-171 (354)
66 PRK10673 acyl-CoA esterase; Pr 45.4 21 0.00046 35.9 3.6 28 202-229 73-100 (255)
67 TIGR02427 protocat_pcaD 3-oxoa 43.4 22 0.00048 34.9 3.3 31 200-230 69-99 (251)
68 PRK00175 metX homoserine O-ace 41.8 28 0.00061 38.1 4.1 31 199-229 135-166 (379)
69 PF00561 Abhydrolase_1: alpha/ 41.2 29 0.00064 33.9 3.8 31 198-228 32-62 (230)
70 PRK11460 putative hydrolase; P 41.0 3.1E+02 0.0068 27.6 11.4 43 294-336 166-210 (232)
71 PRK06765 homoserine O-acetyltr 40.9 29 0.00063 38.3 4.0 31 198-228 148-179 (389)
72 COG0596 MhpC Predicted hydrola 40.4 27 0.00058 34.0 3.4 31 198-228 76-106 (282)
73 PF06259 Abhydrolase_8: Alpha/ 40.2 1.4E+02 0.0031 29.0 8.2 25 111-135 17-41 (177)
74 PLN02894 hydrolase, alpha/beta 38.7 32 0.00069 38.1 3.9 27 202-228 168-194 (402)
75 PRK00006 fabZ (3R)-hydroxymyri 38.5 30 0.00066 32.2 3.2 55 499-554 44-103 (147)
76 PLN02733 phosphatidylcholine-s 37.8 86 0.0019 35.3 7.1 29 200-228 152-180 (440)
77 TIGR01750 fabZ beta-hydroxyacy 37.2 33 0.00072 31.6 3.2 61 493-555 32-100 (140)
78 PF12000 Glyco_trans_4_3: Gkyc 37.0 28 0.0006 33.8 2.7 20 200-219 56-75 (171)
79 TIGR03611 RutD pyrimidine util 36.9 35 0.00075 33.9 3.6 30 200-229 70-99 (257)
80 cd01819 Patatin_and_cPLA2 Pata 36.3 48 0.001 31.3 4.2 31 198-228 14-46 (155)
81 PRK14875 acetoin dehydrogenase 36.0 37 0.00079 36.6 3.8 29 200-228 187-215 (371)
82 PLN02211 methyl indole-3-aceta 35.4 37 0.0008 35.3 3.5 29 200-228 76-105 (273)
83 cd07213 Pat17_PNPLA8_PNPLA9_li 35.1 77 0.0017 33.3 6.0 47 198-244 18-68 (288)
84 PRK05077 frsA fermentation/res 34.4 1.1E+02 0.0023 34.2 7.2 30 199-228 251-283 (414)
85 TIGR01738 bioH putative pimelo 34.0 44 0.00096 32.6 3.8 25 204-228 59-83 (245)
86 COG0764 FabA 3-hydroxymyristoy 33.5 49 0.0011 31.2 3.6 58 495-554 39-101 (147)
87 PRK06489 hypothetical protein; 33.4 41 0.00089 36.5 3.7 25 204-228 147-172 (360)
88 cd07217 Pat17_PNPLA8_PNPLA9_li 33.3 89 0.0019 33.9 6.1 38 208-245 39-76 (344)
89 PRK03204 haloalkane dehalogena 32.7 42 0.0009 35.1 3.4 30 199-228 90-119 (286)
90 TIGR03100 hydr1_PEP hydrolase, 32.7 1.9E+02 0.004 30.0 8.4 28 201-228 89-118 (274)
91 cd07211 Pat_PNPLA8 Patatin-lik 31.6 1E+02 0.0023 32.6 6.3 48 198-245 24-77 (308)
92 TIGR01249 pro_imino_pep_1 prol 31.4 49 0.0011 34.9 3.8 30 200-229 85-114 (306)
93 PF01764 Lipase_3: Lipase (cla 30.2 62 0.0013 29.4 3.8 30 199-228 53-82 (140)
94 PF00756 Esterase: Putative es 26.6 43 0.00093 33.9 2.2 24 205-228 108-133 (251)
95 PLN03087 BODYGUARD 1 domain co 26.6 58 0.0013 37.1 3.4 28 202-229 266-293 (481)
96 TIGR03607 patatin-related prot 26.3 93 0.002 37.3 5.1 32 198-229 51-85 (739)
97 PF01734 Patatin: Patatin-like 26.3 51 0.0011 31.2 2.6 31 198-228 14-45 (204)
98 PRK10749 lysophospholipase L2; 26.1 64 0.0014 34.4 3.6 23 206-228 127-149 (330)
99 PF06821 Ser_hydrolase: Serine 25.5 49 0.0011 32.0 2.2 19 210-228 55-73 (171)
100 COG4188 Predicted dienelactone 25.2 64 0.0014 35.1 3.2 35 208-242 157-191 (365)
101 PF05277 DUF726: Protein of un 24.9 80 0.0017 34.2 3.9 30 198-227 206-237 (345)
102 TIGR03230 lipo_lipase lipoprot 24.8 69 0.0015 36.0 3.5 21 208-228 117-137 (442)
103 PHA02857 monoglyceride lipase; 24.4 77 0.0017 32.4 3.7 23 206-228 93-115 (276)
104 PF05728 UPF0227: Uncharacteri 24.0 85 0.0018 30.9 3.6 27 202-228 51-77 (187)
105 cd00707 Pancreat_lipase_like P 24.0 70 0.0015 33.4 3.3 21 209-229 111-131 (275)
106 PF05677 DUF818: Chlamydia CHL 23.7 2.1E+02 0.0045 31.0 6.6 30 198-227 199-232 (365)
107 cd00519 Lipase_3 Lipase (class 23.3 86 0.0019 31.4 3.7 26 203-228 121-146 (229)
108 COG3946 VirJ Type IV secretory 22.6 1.7E+02 0.0036 32.4 5.7 27 201-227 316-345 (456)
109 PRK10985 putative hydrolase; P 21.8 85 0.0018 33.4 3.4 23 205-227 126-148 (324)
110 KOG1454|consensus 21.7 86 0.0019 33.7 3.4 30 199-228 117-146 (326)
111 KOG4409|consensus 20.9 87 0.0019 33.8 3.1 29 200-228 149-178 (365)
112 PF05990 DUF900: Alpha/beta hy 20.1 2.6E+02 0.0057 28.4 6.4 29 198-226 77-109 (233)
No 1
>KOG1202|consensus
Probab=100.00 E-value=3.1e-85 Score=726.04 Aligned_cols=589 Identities=35% Similarity=0.606 Sum_probs=537.5
Q ss_pred cceeEeccCChhHHHHHH--HhhCCCCchhHHHHHHHhhcCCCCCCceEEEEcCCcccccccccchhhhHHHhhhccCCC
Q psy8296 24 YSGYTLLPTPTKAVHGSL--LETMPYNNDFCSLVNQVFKEPINGLFYSGYTLLPTPTKAVHGSLFKFTLWFRTILNFNPF 101 (700)
Q Consensus 24 ~~~~~lsa~~~~a~~~~~--l~~~~~~~~~~~~l~~la~t~r~~~~~R~~~v~~~~~~l~~~~l~~~~~~~~~~l~~~~~ 101 (700)
......|.|++||+++.+ ...+.+|.++.++++|++......||+|+|.|.++.... .
T Consensus 430 ~~l~~~sgRT~eAVeqll~~~~~n~~D~~~l~llndi~s~p~~~~pFRGY~vl~~e~~~------------~-------- 489 (2376)
T KOG1202|consen 430 LRLVRASGRTPEAVEQLLEQALRNSDDLELLSLLNDIASVPAPLHPFRGYAVLGGERGG------------P-------- 489 (2376)
T ss_pred ceeeecCCCCHHHHHHHHHHHhcccchHHHHHHHHHHhcCCccCCcccceEEeccccCC------------c--------
Confidence 344555999999999983 456677889999999999999999999999999876433 2
Q ss_pred CCcccccCCCCCCEEEEEcCCCCChhhhHHHHhhcHHHHHHHHHHHhhhcccCCChhhhccCCCCCcchhhhhhhHhhhh
Q psy8296 102 CPISQLTQPIKRPVWFVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVT 181 (700)
Q Consensus 102 ~~~~~~~~~~~~~v~fvF~GQGsq~~gmg~~L~~~p~fr~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~l~a 181 (700)
++ ...+...+|+.|+++|.|+||+||+++|++.+.||+.+.+|++.+++.|+++.+.|...++..+++..++...|.|
T Consensus 490 -ev-~~~~~~eRPiwfiysGMGsQW~~Ma~~LMkl~~F~dsi~~~ae~l~~~gldv~~vL~~s~~~tfdn~l~sfvsitA 567 (2376)
T KOG1202|consen 490 -EV-QQVPAGERPIWFIYSGMGSQWAGMAKDLMKLERFRDSIQRSAEVLKPFGLDVIDVLTRSDESTFDNILNSFVSITA 567 (2376)
T ss_pred -ce-eecCCCCcceEEEEeCCcchhhHHHHHHhhhHHHHHHHHHHHhhhcccCcchhhhhcCCChHHHHHHHHHHHHHHH
Confidence 23 4556666899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccchhhHHHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHHHHHhHhhhhcccCCCCcEEEE
Q psy8296 182 CHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSV 261 (700)
Q Consensus 182 ~q~~~~~~~~~~~~~~~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~Rg~l~~~~~~~~~G~M~av 261 (700)
+| +||.++|...||+||.++|||+||+.++|+-|++|.|+++.++|.||+.+.+...+ +|+|+||
T Consensus 568 iQ--------------iaLtDlLs~lgi~PDGIvGHS~GElgc~YaDGclt~EqtvlaAYwRG~sild~~l~-kGaMAAV 632 (2376)
T KOG1202|consen 568 IQ--------------IALTDLLSCLGIRPDGIVGHSLGELGCGYADGCLTQEQTVLAAYWRGQSILDTHLP-KGAMAAV 632 (2376)
T ss_pred HH--------------HHHHHHHHhcCCCCCcccccccchhcccccccccCHHHHHHHHHHcCceeccccCC-Ccchhhh
Confidence 99 99999999999999999999999999999999999999999999999998887777 9999999
Q ss_pred cCCHHhHhC-CCCCceEeEecCCCcEEEecChhhHHHHHHHHhcCCeeEEEeccccCCCChhhHhhhHHHHHHHHhhhcc
Q psy8296 262 GLNYKDLTD-LPPSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQ 340 (700)
Q Consensus 262 ~~~~~~v~~-l~~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~~i~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~ 340 (700)
+++.|++.+ +++++.-+|+||.++|+|||+.+.+.++++.|+++|||++.++.+++||||+.|+.+.+++++.++.+..
T Consensus 633 GLsWEq~~~~~P~~~~paCHNs~D~~TiSGp~a~v~~~v~qL~~~gvFak~V~t~G~aFHS~~m~a~~p~l~~~l~k~i~ 712 (2376)
T KOG1202|consen 633 GLSWEQCKSRCPPDVVPACHNSKDNVTISGPQASVFAFVEQLRAEGVFAKEVRTGGYAFHSPYMEAAAPPLRQSLEKVIP 712 (2376)
T ss_pred cCCHHHHhccCCCcccccccCCCCceEecCChHHHHHHHHHhhhcCeeeeEecCCCccccCHHHHhhChHHHHHHHHhcC
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCceEEeCCCCCCccCCccccCCChhHHHHhhccccchHHHHhhcccCcEEEEECCChhhHHHHHhhhcCCCceee
Q psy8296 341 NPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPENAIVIEVAPHGLMQALLRRTTKDGCVNIP 420 (700)
Q Consensus 341 ~~~~p~~~~~S~~~g~~~~~~~~~~~~~~~yw~~~l~~pV~F~~av~~l~~~~~~iEiGP~~~L~~~~~~~l~~~~~~~~ 420 (700)
.|++.+.+|+|+...+..|.++.....+++|.++|+++||.|.+|++.+.++.+.|||.||+.+...+|+.+++.+++++
T Consensus 713 epK~rsarWlSTSipEa~W~s~la~tsSA~Y~vnNl~SPVLF~eAlq~vP~nAv~vEiAPH~LlqAiLkRsL~p~~t~v~ 792 (2376)
T KOG1202|consen 713 EPKPRSARWLSTSIPEAQWHSSLARTSSAEYHVNNLVSPVLFHEALQHVPENAVVVEIAPHGLLQAILKRSLKPSCTNVS 792 (2376)
T ss_pred CCCCcccchhhccCChhhhcChhhhhcchhhhhhccccHHHHHHHHHhCcccceEEEecchHHHHHHHHhhcCCccceeh
Confidence 88999999999999999898887778899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchhhHHHHhhhhhhcCCCCchhhhcCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCC--ceeEEEecc
Q psy8296 421 LCRRQTESPANFLLAALGQLHMNGLRPNIEALYEPDSFPVPRGTPCLSPCIFWNHEDDWDSGIAPNIQN--NEVTEVDLL 498 (700)
Q Consensus 421 ~l~r~~~~~~~~ll~~l~~L~~~G~~vd~~~l~~~~~~~~~~~~~~~LP~Y~f~~~~~W~~~~~~~~~~--~~~~~~~l~ 498 (700)
.++|++.+..+.+|..+|+||.+|++++...++++.++|+++++|+.-|..-|||+..|..++...... ..+++++++
T Consensus 793 Lmkr~h~~NlEffL~~lgrly~aG~~~qi~~l~p~i~ypv~rGTPmi~~lv~WDHtq~W~~~~f~~gs~s~~a~~niD~~ 872 (2376)
T KOG1202|consen 793 LMKRGHRNNLEFFLAGLGRLYAAGIQPQILALFPPIEYPVPRGTPMIGPLVKWDHTQKWLVPKFPGGSGSSAAIYNIDLS 872 (2376)
T ss_pred hhcCcccccHHHHHHHHHHHHHccCCccceeccCCCcccCCCCCcCcccccCccccccccccccCCCCCccceEEEccCC
Confidence 999999999999999999999999999999999999999999999999999999999999887443322 778899999
Q ss_pred cccccccccceecCeeccchhhHHHHHHHHHHHhcccCCCceeEEEecCccceeEEE------------eCCceeEEEEE
Q psy8296 499 NKEYRALFSHQVNGVVIPPLSLFLVDVYEKLCAQHHKNGLDETFVCEEYKMKSLVEV------------TSTGCHAQIVY 566 (700)
Q Consensus 499 ~~~~p~L~dH~V~g~~v~Paa~ylemA~eA~~~~~~~~~~~~~~~l~dv~~~~~l~l------------~~~~~~F~I~S 566 (700)
.++..||.||.++|+++||++||+.+||...++..|.+....++.++|+.|+++..+ -++++.|||++
T Consensus 873 ~edd~yL~~HtiDGRvLfPaTGymtlaW~tlak~qGldy~ktPVvfEdvv~h~ATIL~k~~vvkl~v~~~~gs~aFEi~e 952 (2376)
T KOG1202|consen 873 KEDDHYLADHTIDGRVLFPATGYMTLAWKTLAKPQGLDYEKTPVVFEDVVFHRATILPKTGVVKLEVNLFPGSGAFEICE 952 (2376)
T ss_pred ccccceeccceecceEEeccccchhHHHHHHhhhccCCcccCceeeeeeeeeeeEeecCCceEEEEEEEcCCCcceEEec
Confidence 777889999999999999999999999999999999888889999999999995444 35678999999
Q ss_pred cCeEee------cCC------------------CccHHHHHHHHHhCCC---CCCcccccccccccccccCCCCceEEEE
Q psy8296 567 NGNLMV------YLD------------------TILKIKVFLELSEDGV---PVFPSMLREFIMSTNQISNLNPGCHAQI 619 (700)
Q Consensus 567 ~~~~~~------~~~------------------~~~~~~~Y~~l~~~G~---p~Fqgl~~i~~~~~~~~~~~~~~~~a~i 619 (700)
++++.+ +++ ....++.|++|+-+|| +.||||- +. ...+..|++
T Consensus 953 ~~~l~~SGki~i~ed~~~~~~~l~e~~~~~~a~eL~t~dvYKElrLRGYdYg~~FqGI~-----~s-----~~s~~tG~L 1022 (2376)
T KOG1202|consen 953 NGSLVVSGKIYIPEDPDPELLDLEESPTSAPAEELATADVYKELRLRGYDYGGHFQGIL-----ES-----DLSGDTGRL 1022 (2376)
T ss_pred CCcEEEeeeEeccCCCchhhcccccCCCcchhhhhhHHHHHHHHHhcccccchhhhhhh-----hh-----ccccccceE
Confidence 776543 221 1234899999999999 9999999 55 667889999
Q ss_pred eecCCchhHHHHHHhhHhhhhcCCCCceeccccccEEEEccC
Q psy8296 620 VYNGNLMVYLDTILKIKVFLELSEDGVPVFPSMLREFIMSTN 661 (700)
Q Consensus 620 ~~~~~hP~~LD~~lQ~~~~a~~~~~~~~~vP~~i~~l~i~~~ 661 (700)
.|.++|.+++|.+||..+++... .+.++||+|+++.|.+.
T Consensus 1023 ~W~dNWvsFmDtmLQ~siLs~~~--~~LylPTrv~~~~IdP~ 1062 (2376)
T KOG1202|consen 1023 QWKDNWVSFMDTMLQFSILSSAK--RELYLPTRVERAHIDPA 1062 (2376)
T ss_pred EEeccHHHHHHHHHHHHHHhhcc--cceecccceeeeeeChH
Confidence 99999999999999998887553 57899999999999643
No 2
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=100.00 E-value=5.5e-63 Score=528.63 Aligned_cols=308 Identities=30% Similarity=0.452 Sum_probs=276.8
Q ss_pred EEEEcCCCCChhhhHHHHhh-cHHHHHHHHHHHhhhcc-cCCChhhhccCCCC-CcchhhhhhhHhhhhhcccccccccc
Q psy8296 116 WFVYAGMGSQWPGMARELMW-FAPFRQAIFECDRVYRP-LGLDIVKIITSDDP-TTFDDILNSFVAIVTCHQGCYVNRLL 192 (700)
Q Consensus 116 ~fvF~GQGsq~~gmg~~L~~-~p~fr~~~~~~~~~l~~-~g~~l~~~l~~~~~-~~~~~~~~~q~~l~a~q~~~~~~~~~ 192 (700)
+|+|||||+||+|||++||+ +|.||+.+++|++++++ +|+++.+.+++.+. ..+.++.++||+||++|
T Consensus 1 vFlFpGQGsq~~gMg~~L~~~~p~f~~~~~~~~~~l~~~~g~~l~~~l~~~~~~~~l~~~~~~qpai~~~~--------- 71 (318)
T PF00698_consen 1 VFLFPGQGSQYPGMGRDLYENNPVFRETIDRCDEILKELLGFSLLELLFEGPESEDLNDTEYAQPAIFAIQ--------- 71 (318)
T ss_dssp EEEE--TTS--TTTTHHHHHH-HHHHHHHHHHHHHHTSHHTS-HHHHHHHTTHCHHHTSHHHHHHHHHHHH---------
T ss_pred cEEECCcchhhHhHHHHHHHcChhhHHHHHhhhhhhhcccccchhhhhhcccccccccchheecchhhhhh---------
Confidence 69999999999999999999 89999999999999997 89999999987664 45688999999999999
Q ss_pred chhhHHHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHHHHHhHhhhhcccCCCCcEEEEcCCHHhHhC-C
Q psy8296 193 GALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTD-L 271 (700)
Q Consensus 193 ~~~~~~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~Rg~l~~~~~~~~~G~M~av~~~~~~v~~-l 271 (700)
+|++++|+++||+||+++|||+|||+|+|+||+++++|++++++.|+++|.+.. .+|+|++|.....+... .
T Consensus 72 -----~al~~~l~~~Gi~P~~v~GhSlGE~aA~~aaG~ls~e~a~~lv~~R~~~m~~~~--~~g~m~av~~~~~~~~~~~ 144 (318)
T PF00698_consen 72 -----VALARLLRSWGIKPDAVIGHSLGEYAALVAAGALSLEDALRLVYERARLMDEAA--PPGAMLAVRGEEEEEKLAL 144 (318)
T ss_dssp -----HHHHHHHHHTTHCESEEEESTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHS--TSEEEEEEESHHHHHHHHT
T ss_pred -----hhhhhhhcccccccceeeccchhhHHHHHHCCccchhhhhhhHHHHHHHHHHhh--hcccccchhhhHHhhhccc
Confidence 999999999999999999999999999999999999999999999999998854 58999999884333333 7
Q ss_pred CCCceEeEecCCCcEEEecChhhHHHHHHHHhcCCeeEEEeccccCCCChhhHhhhHHHHHHHHhhhccCCCCCCceEEe
Q psy8296 272 PPSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKWIS 351 (700)
Q Consensus 272 ~~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~~i~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~p~~~~~S 351 (700)
.++++|||+|+|+++||||+.++++++.+.|++.|++++.|+++ +||||++|+|+.++|++.++.+.. ++|++|++|
T Consensus 145 ~~~v~ia~~Ns~~q~visG~~~~l~~~~~~l~~~~~~~~~l~v~-~afHs~~m~~~~~~~~~~l~~~~~--~~p~ip~~S 221 (318)
T PF00698_consen 145 PPDVEIANINSPRQVVISGEREALEALVERLKAEGIKAKRLPVS-YAFHSPLMEPAADEFREALESIEF--RPPKIPVYS 221 (318)
T ss_dssp TTTEEEEEEEETTEEEEEEEHHHHHHHHHHHHHTTSEEEEESSS-SETTSGGGHHHHHHHHHHHHTSCS--CCCSSEEEE
T ss_pred cccceeeeeccccccccCCCHHHHHHHHHHhhccceeEEEeeee-ccccCchhhhhHHHHHhhhhcccc--cccccccee
Confidence 88999999999999999999999999999999999999999995 999999999999999999999775 789999999
Q ss_pred CCCCCCccCCccccCCChhHHHHhhccccchHHHHhhcccC--cEEEEECCChhhHHHHHhhhc----CCCceeecccCC
Q psy8296 352 SSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPEN--AIVIEVAPHGLMQALLRRTTK----DGCVNIPLCRRQ 425 (700)
Q Consensus 352 ~~~g~~~~~~~~~~~~~~~yw~~~l~~pV~F~~av~~l~~~--~~~iEiGP~~~L~~~~~~~l~----~~~~~~~~l~r~ 425 (700)
+++|+.+... ...++||++|+++||+|.++++.+.+. ++|||||||++|+++++++++ ....++++++|+
T Consensus 222 ~~~g~~~~~~----~~~~~~~~~~l~~pV~f~~~v~~l~~~g~~~fiEiGP~~~L~~~~~~~l~~~~~~~~~~i~~~~~~ 297 (318)
T PF00698_consen 222 NVTGRPYDDP----ELIAEYWARQLRSPVRFREAVEALYEDGVRVFIEIGPGSVLTSLVKRILKSENGSDATLIPSLRRG 297 (318)
T ss_dssp TTTSSBEHSH----HHHHHHHHHHHHSHEEHHHHHHHHHHTTEEEEEEESSSSHHHHHHHHHSTSETTTTSEEEESEBTT
T ss_pred eccccccccc----ccchhHHHhccCCcCChHHHHHHHHhcCCCEEEEeCchHHHHHHHHHHHhhccCCCeEEEeccCCC
Confidence 9999987432 247899999999999999999999666 689999999999999999997 367899999999
Q ss_pred CCCchhhHHHHhhhhhhcCCCC
Q psy8296 426 TESPANFLLAALGQLHMNGLRP 447 (700)
Q Consensus 426 ~~~~~~~ll~~l~~L~~~G~~v 447 (700)
.++..++++++++||++|++|
T Consensus 298 -~~~~~~~~~~l~~l~~~Gv~~ 318 (318)
T PF00698_consen 298 -HDDLDTFLQALAQLFVSGVAV 318 (318)
T ss_dssp -BSCHHHHHHHHHHHHHTT-HH
T ss_pred -CChHHHHHHHHHHHHHcCCCC
Confidence 789999999999999999864
No 3
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.2e-60 Score=568.03 Aligned_cols=467 Identities=21% Similarity=0.239 Sum_probs=393.4
Q ss_pred ceeEeccCChhHHHHH------HHhhCCCCchhHHHHHHHhhcC---CCCCCceEEEEcCCcccccccccchhhhHHHhh
Q psy8296 25 SGYTLLPTPTKAVHGS------LLETMPYNNDFCSLVNQVFKEP---INGLFYSGYTLLPTPTKAVHGSLFKFTLWFRTI 95 (700)
Q Consensus 25 ~~~~lsa~~~~a~~~~------~l~~~~~~~~~~~~l~~la~t~---r~~~~~R~~~v~~~~~~l~~~~l~~~~~~~~~~ 95 (700)
..|+|||+++++|+.. +++.+.... .|.|+|||+ |.+|+||.++|+++.+++. .+|+.+...+
T Consensus 440 ~~l~lSAk~~~~L~~~a~~l~~~l~~~~~~~----~l~dia~Tl~~gR~~~~~R~~~va~~~eel~----~~L~~~~~~~ 511 (1061)
T COG3321 440 RLLVLSAKTAERLAATAPRLADRLELQGGLL----SLADVAYTLQAGRPHFEHRLAVVANDREELE----AGLRAFAAGK 511 (1061)
T ss_pred ceeeeecCCHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhhhhhccceeEEEeCCHHHHH----HHHHHHhcCC
Confidence 4699999999999999 444444321 689999986 8899999999999999982 2222222111
Q ss_pred hccCCCCCcccccCCCCCCEEEEEcCCCCChhhhHHHHhh-cHHHHHHHHHHHhhhcc-cCCChhhhccCCCCCcchhhh
Q psy8296 96 LNFNPFCPISQLTQPIKRPVWFVYAGMGSQWPGMARELMW-FAPFRQAIFECDRVYRP-LGLDIVKIITSDDPTTFDDIL 173 (700)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~v~fvF~GQGsq~~gmg~~L~~-~p~fr~~~~~~~~~l~~-~g~~l~~~l~~~~~~~~~~~~ 173 (700)
.... .. .......++++|+|+|||+||.+||++||+ +|+|+++++.|+..+.. +|+++.+.++..+...+..+.
T Consensus 512 ~~~~---~~-~~~~~~~~~~vfvf~gqgsq~~~mg~el~~~~p~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~ 587 (1061)
T COG3321 512 AKAL---SG-VGADDSGKKTVFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDYPFLESID 587 (1061)
T ss_pred CCcc---ce-ecccCCCCceEEEeCchHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHcCCcccceecCCCCccccCcc
Confidence 1110 01 011111227999999999999999999999 99999999999999986 799999999876543366777
Q ss_pred hhhHhhhhhccccccccccchhhHHHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHHHHHhHhhhhcccC
Q psy8296 174 NSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLE 253 (700)
Q Consensus 174 ~~q~~l~a~q~~~~~~~~~~~~~~~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~Rg~l~~~~~~~ 253 (700)
..||++|++| ++|+++|++||++|++|+|||+||++||+++|++|++|+++++..||++|... .
T Consensus 588 ~~Qp~lfai~--------------~ala~l~~s~gv~p~~viGhS~gE~aaA~~aGv~s~~d~~~~v~~Rg~lm~~~--~ 651 (1061)
T COG3321 588 FAQPALFAVS--------------VALAALWRSWGVIPGAVIGHSLGELAAAVAAGVLSLEDALRVVATRGRLMQQL--A 651 (1061)
T ss_pred hhhhHHHHHH--------------HHHHHHHHhcCCcCccccCcCHHHHHHHHHhccCChhhhhHhhhhcchhhccC--C
Confidence 9999999999 99999999999999999999999999999999999999999999999999983 3
Q ss_pred CCCcEEEEcCCH-HhHhC-CC---CCceEeEecCCCcEEEecChhhHHHHHHHHhcCCeeEEEeccccCCCChhhHhhhH
Q psy8296 254 KPGLMVSVGLNY-KDLTD-LP---PSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLA 328 (700)
Q Consensus 254 ~~G~M~av~~~~-~~v~~-l~---~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~~i~~~~L~v~~~afHS~~m~~~~ 328 (700)
+.|+|++|.++. +++.+ +. ..+.||++|+|+++||+|+++++.++...+.+.+++++++.++ |+|||+.|+|+.
T Consensus 652 ~~G~m~~v~~~~~~~~~~~~~~~~~~v~ia~~n~P~~~vi~g~~~~i~~l~~~~~~~~~~~~~~~v~-~a~hs~~m~~~~ 730 (1061)
T COG3321 652 GEGAMLAVELSLLAEVQELLALGRPQVPLAAVNSPQQVVIAGDPEAIAALIARLQAQGVRARRLAVS-HAFHSPLMDPIL 730 (1061)
T ss_pred CCcchhhhhcCccchhhHHhhccccceeEEEecCCceEEecCCHHHHHHHHHHHhccCcccceeeee-eccccHHHHHHH
Confidence 459999999888 66666 43 4799999999999999999999999999999999999999996 999999999999
Q ss_pred HHHHHHHhhhccCCCCCCceEEeCCCCCCccCCccccCCChhHHHHhhccccchHHHHhhcccC--cEEEEECCChhhHH
Q psy8296 329 PKVLELFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPEN--AIVIEVAPHGLMQA 406 (700)
Q Consensus 329 ~~~~~~l~~~~~~~~~p~~~~~S~~~g~~~~~~~~~~~~~~~yw~~~l~~pV~F~~av~~l~~~--~~~iEiGP~~~L~~ 406 (700)
++|.+.+.++.. .+|.+|++|++++... . .+..+++||.+|+|+||+|.++++.+.+. .+|+|+|||+.|+.
T Consensus 731 ~~~~~~la~i~~--~~p~~p~~S~~~~~~~-~---~~~~d~~yw~~~~r~~v~f~~~i~~~~~~~~~~f~E~~p~p~l~~ 804 (1061)
T COG3321 731 DEFAAALADLAP--RPPQIPLISNVTGDLA-G---EPGGDAQYWVQHLRQPVRFADAIAAALADGARTFIEVGPGPVLTE 804 (1061)
T ss_pred HHHHHHHhhccc--CCCCcceeeeeecccc-C---CcccCHHHHHHHHHhhccHHHHHHHHHhcccceEEEecCCHhHHH
Confidence 999999999986 8899999999999882 2 34568999999999999999999999877 69999999999999
Q ss_pred HHHhhhcCCCceeecccCCCCCchhhHHHHhhhhhhcCCCCchhhhcCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy8296 407 LLRRTTKDGCVNIPLCRRQTESPANFLLAALGQLHMNGLRPNIEALYEPDSFPVPRGTPCLSPCIFWNHEDDWDSGIAPN 486 (700)
Q Consensus 407 ~~~~~l~~~~~~~~~l~r~~~~~~~~ll~~l~~L~~~G~~vd~~~l~~~~~~~~~~~~~~~LP~Y~f~~~~~W~~~~~~~ 486 (700)
.+++++......+++++|+ .++...++..+++||..|+++||..++.... ++++.+|+|+|+|.++|.+.....
T Consensus 805 ~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~l~~~g~~~dw~~~~~~~~-----~~~v~lp~~~~q~~~~wl~~~~~~ 878 (1061)
T COG3321 805 SIKQTLRDAILSIATLRRD-APELLSFLAALAQLFVAGVAVDWSPLVYGPD-----GRLVELPTYPFQRQRFWLDPEALG 878 (1061)
T ss_pred HHHHHhhhhhcchhhhccc-ccchhHHHHHHHHHHhcCCCcCcHhhhcCCc-----cccccCCCCCceeccccccccccc
Confidence 9999986555667778888 7888999999999999999999999987532 336889999999999999874111
Q ss_pred ---CC-----------CceeEEEecccccccccccceecCeeccchhhHHHHHHHHHHHh
Q psy8296 487 ---IQ-----------NNEVTEVDLLNKEYRALFSHQVNGVVIPPLSLFLVDVYEKLCAQ 532 (700)
Q Consensus 487 ---~~-----------~~~~~~~~l~~~~~p~L~dH~V~g~~v~Paa~ylemA~eA~~~~ 532 (700)
.+ ....|...+.....+|+.+|.+....++|+++|.++++.++...
T Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1061)
T COG3321 879 VASHPLLGAVLGRPSSGEVVLQGSLDLLAVPWLADHDVRNVAALPGAAYVELALAAADEV 938 (1061)
T ss_pred cccccccchhccCCCCccccccccccccccchhhhchhccccccccchhhhhhhhhhhhc
Confidence 00 03446666666778999999999999999999999999986554
No 4
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=100.00 E-value=6.3e-57 Score=570.50 Aligned_cols=403 Identities=21% Similarity=0.190 Sum_probs=321.9
Q ss_pred cceeEeccCChhHHHHH---H---HhhCCCCchhHHHHHHHh--hcC--CCCCCceEEEEcCCcccccccccchhhhHHH
Q psy8296 24 YSGYTLLPTPTKAVHGS---L---LETMPYNNDFCSLVNQVF--KEP--INGLFYSGYTLLPTPTKAVHGSLFKFTLWFR 93 (700)
Q Consensus 24 ~~~~~lsa~~~~a~~~~---~---l~~~~~~~~~~~~l~~la--~t~--r~~~~~R~~~v~~~~~~l~~~~l~~~~~~~~ 93 (700)
...++||+++.++|+.. | +.....+.+ ..+.+++ ++. +.++.||.++|+++.+++. ..|... .
T Consensus 478 ~~~~~lSA~~~~aL~~~l~~~~~~l~~~~~~~~--~~~~~la~~~t~~~~~~~~~R~a~va~~~~el~----~~L~~a-~ 550 (2582)
T TIGR02813 478 AQTLLFTAANEKALVSSLKDWKNKLSAKADDQP--YAFNALAVENTLRTIAVALARLGFVAKNADELI----TMLEQA-I 550 (2582)
T ss_pred cceeeecCCCHHHHHHHHHHHHHHHhccccccc--ccHHHHHHHhhhcccccCCceEEEEECCHHHHH----HHHHHH-H
Confidence 45788999999999877 2 222222211 2345665 333 4567899999999998872 111111 1
Q ss_pred hhhccCCCC----Ccc---cc--cCCCCCCEEEEEcCCCCChhhhHHHHhh-cHHHHHHHHHHHhhhcc-cCCChhhhcc
Q psy8296 94 TILNFNPFC----PIS---QL--TQPIKRPVWFVYAGMGSQWPGMARELMW-FAPFRQAIFECDRVYRP-LGLDIVKIIT 162 (700)
Q Consensus 94 ~~l~~~~~~----~~~---~~--~~~~~~~v~fvF~GQGsq~~gmg~~L~~-~p~fr~~~~~~~~~l~~-~g~~l~~~l~ 162 (700)
..+...... +.+ .. .....++++|+|||||+||+|||++||+ +|.||+.+++|++++.. .+.++.+.++
T Consensus 551 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~kvaflFpGQGSQy~gMgreL~~~~P~fr~~ld~~d~~l~~~~~~~L~~~l~ 630 (2582)
T TIGR02813 551 TQLEAKSCEEWQLPSGISYRKSALVVESGKVAALFAGQGSQYLNMGRELACNFPEVRQAAADMDSVFTQAGKGALSPVLY 630 (2582)
T ss_pred HhhhccccccccccccccccccccccCCCceEEEeCCCCchhHHHHHHHHhcCHHHHHHHHHHHHHhhhhcCCcHHHHhc
Confidence 112111000 000 00 0123578999999999999999999998 99999999999999986 4567777765
Q ss_pred CC----------CCCcchhhhhhhHhhhhhccccccccccchhhHHHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCC
Q psy8296 163 SD----------DPTTFDDILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFD 232 (700)
Q Consensus 163 ~~----------~~~~~~~~~~~q~~l~a~q~~~~~~~~~~~~~~~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls 232 (700)
.. ....+.++.++||+||++| +|++++|++|||+|++|+|||+|||+|+|+||+|+
T Consensus 631 p~~~~~~~~~~~~~~~L~~t~~aQPaI~a~q--------------~Al~~lL~~~Gi~Pd~v~GHSlGE~aAa~aAGvls 696 (2582)
T TIGR02813 631 PIPVFNDESRKAQEEALTNTQHAQSAIGTLS--------------MGQYKLFTQAGFKADMTAGHSFGELSALCAAGVIS 696 (2582)
T ss_pred cccccccccccchhhhhccchhHHHHHHHHH--------------HHHHHHHHHcCCccceeecCCHHHHHHHHHhCCCC
Confidence 31 1223578899999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhhcccC-CCCcEEEEcCC----HHhHhC-CC--CCceEeEecCCCcEEEecChhhHHHHHHHHhc
Q psy8296 233 IREACLGGYARGYASKVYKLE-KPGLMVSVGLN----YKDLTD-LP--PSVDIACHNSDDNTTISGAQEDVEPYLEILKA 304 (700)
Q Consensus 233 l~dai~lv~~Rg~l~~~~~~~-~~G~M~av~~~----~~~v~~-l~--~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~ 304 (700)
++|++++++.||++|.+.... ..|.|++|.++ .+++++ +. ++|+|||+|+|+++||||+.++|+++.+.|++
T Consensus 697 ~edal~Lv~~Rg~lm~~~~~~~~~G~M~AV~l~~~~~~~~v~~~l~~~~~V~IA~~NsP~qvVISG~~~ai~~l~~~L~~ 776 (2582)
T TIGR02813 697 DDDYMMLAFSRGQAMAAPTGEADIGFMYAVILAVVGSPTVIANCIKDFEGVSIANYNSPTQLVIAGVSTQIQIAAKALKE 776 (2582)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeEEEEccccccHHHHHHHhccCCCEEEEEEecCCCEEEECCHHHHHHHHHHHHh
Confidence 999999999999999875422 36999999764 455665 42 47999999999999999999999999999999
Q ss_pred CCeeEEEeccccCCCChhhHhhhHHHHHHHHhhhccCCCCCCceEEeCCCCCCccCCccccCCChhHHHHhhccccchHH
Q psy8296 305 KNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTE 384 (700)
Q Consensus 305 ~~i~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~p~~~~~S~~~g~~~~~~~~~~~~~~~yw~~~l~~pV~F~~ 384 (700)
+|+++++|+|+ +||||++|+++.++|++.++.+.+ ++|.+|+|||++|+.+... .....+||.+|+++||+|.+
T Consensus 777 ~Gi~a~~L~Vs-~AFHSplm~~a~~~f~~~L~~i~~--~~P~ipv~SnvtG~~~~~~---~~~i~~~~~~ql~~PV~F~~ 850 (2582)
T TIGR02813 777 KGFKAIPLPVS-GAFHTPLVAHAQKPFSAAIDKAKF--NTPLVPLYSNGTGKLHSND---AAAIKKALKNHMLQSVHFSE 850 (2582)
T ss_pred CCCeEEECCCC-CCcCcHHHHHHHHHHHHHHhhCCC--CCCCceEEECCCCeEecCc---hhhHHHHHHHHhhCeecHHH
Confidence 99999999995 999999999999999999999886 7789999999999976432 12357999999999999999
Q ss_pred HHhhcccC--cEEEEECCChhhHHHHHhhhcCC---Cceeecc-cCCCCCchhhHHHHhhhhhhcCCCCchhhhcC
Q psy8296 385 ACAYIPEN--AIVIEVAPHGLMQALLRRTTKDG---CVNIPLC-RRQTESPANFLLAALGQLHMNGLRPNIEALYE 454 (700)
Q Consensus 385 av~~l~~~--~~~iEiGP~~~L~~~~~~~l~~~---~~~~~~l-~r~~~~~~~~ll~~l~~L~~~G~~vd~~~l~~ 454 (700)
+|+.+.++ ++|||+|||++|++++++++++. ...++.. +++ .++..+|++++++||++|+++||-..+.
T Consensus 851 aIe~l~~~G~~~FVEiGPg~vLt~lv~~il~~~~~~~~~v~~~~~~~-~~~~~~l~~a~~~L~~~G~~v~~~~~~~ 925 (2582)
T TIGR02813 851 QLEAMYAAGARVFVEFGPKNILQKLVENTLKDKENELCAISINPNPK-GDSDMQLRQAAVQLAVLGLELTEIDPYQ 925 (2582)
T ss_pred HHHHHHHCCCCEEEEcCCcHHHHHHHHHHhhccCCCeeEEeeccCCC-CCHHHHHHHHHHHHHHCCCCCCCccccc
Confidence 99999876 68999999999999999999753 2345544 344 6788899999999999999999877654
No 5
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=100.00 E-value=8.5e-56 Score=491.29 Aligned_cols=316 Identities=18% Similarity=0.210 Sum_probs=259.7
Q ss_pred CCCEEEEEcCCCCChhhhHHHHhh-cHHHHHHHHHHHhhhcccCCChhhhccCCCCCcchhhhhhhHhhhh--hcccccc
Q psy8296 112 KRPVWFVYAGMGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVT--CHQGCYV 188 (700)
Q Consensus 112 ~~~v~fvF~GQGsq~~gmg~~L~~-~p~fr~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~l~a--~q~~~~~ 188 (700)
+++++|||||||+||+||||+||+ +|+||+.+++|+.+...+.- +.++..+.....++.+.||++|+ +|
T Consensus 180 ~~~vaFvFpGqGsqy~gMGr~L~~~~P~fr~~ld~~~~L~~~L~~---~~~~~~~~~~~~~~~l~q~alfav~~~----- 251 (538)
T TIGR02816 180 KAGLAFVYPGVGTVYADMFNDFHQYFPALFAKLEREGDLKAMLQA---EDIYGEDPKHAAEMSLGDLAIAGVGSS----- 251 (538)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhhCHHHHHHHHhcCCHHHHhcc---ccccccchhhhhhhhhHhHHHHHHHHH-----
Confidence 568999999999999999999999 99999999998544322210 11222222223466788999996 48
Q ss_pred ccccchhhHHHHHHHH-HHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHHHHHhHhhhhcc-----------c----
Q psy8296 189 NRLLGALKKIGLTEIL-RAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYK-----------L---- 252 (700)
Q Consensus 189 ~~~~~~~~~~Ala~ll-~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~Rg~l~~~~~-----------~---- 252 (700)
|+|+++| ++|||+|++++|||+|||+|+|+||+|+++|++.++..|+++|.... .
T Consensus 252 ---------~aLa~ll~~~~GI~Pdav~GHSlGE~aAa~aAGvls~~dal~~v~~rs~L~~~~~rG~mmavr~a~~~~~~ 322 (538)
T TIGR02816 252 ---------YLLTQLLCDEFAIKPDFALGYSKGEASMWASLGVWKNPHALIEKTQTDPIFTSAISGKLTAVREAWQLDDT 322 (538)
T ss_pred ---------HHHHHHHHHhcCCCCCEEeecCHHHHHHHHHhCCCCcHHHHHHHHHhhHHhccccChhhhhhhhhhccccc
Confidence 9999999 59999999999999999999999999999999999999988886421 0
Q ss_pred --CCCCcEEEEcCCHHhHhC-CC--CCceEeEecCCCcEEEecChhhHHHHHHHHhcCCeeEEEeccccCC-----CChh
Q psy8296 253 --EKPGLMVSVGLNYKDLTD-LP--PSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIA-----YHSR 322 (700)
Q Consensus 253 --~~~G~M~av~~~~~~v~~-l~--~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~~i~~~~L~v~~~a-----fHS~ 322 (700)
...|.|++|+++.+++++ |. ++|+||++|+ .+|||||+.++|+++.+.|+++|+++++|.+. |+ |||+
T Consensus 323 ~~~~~~~~avV~a~~~~V~~~L~~~~~V~IAaiN~-~q~VISG~~~Ai~~l~~~L~~~Gi~~r~L~a~-HA~pam~~HS~ 400 (538)
T TIGR02816 323 AAEIQWNSFVVRCEAAPIEALLKDFPHAYLAIIQG-DTCVIAGCEAQCKALLAALGKRGIAANRVTAM-HTQPALQEHQN 400 (538)
T ss_pred cccccccceeecCCHHHHHHHhccCCCeEEEEeCC-CCeEeeCCHHHHHHHHHHHHhCCeeeeecccc-ccCcccccccH
Confidence 012345577899999999 64 3599999998 79999999999999999999999999999995 88 9999
Q ss_pred hHhhhHHHHHHHHhhhccCCCCCCceEEeCCC--CCCccCCc-cccCCChhHHHHhhccccchHHHHhhcccC--cEEEE
Q psy8296 323 QVKPLAPKVLELFQQAVQNPKKRSAKWISSSI--PEEEWNSP-LAQYSSAEYHVNNFLHTVRFTEACAYIPEN--AIVIE 397 (700)
Q Consensus 323 ~m~~~~~~~~~~l~~~~~~~~~p~~~~~S~~~--g~~~~~~~-~~~~~~~~yw~~~l~~pV~F~~av~~l~~~--~~~iE 397 (700)
+|+++.++|...+ +|.+|++|+++ |....... ......++||.+|+++||+|.++++.+.++ .+|||
T Consensus 401 ~me~~l~~f~~~l--------~p~ip~iSnvt~tG~~~~~~~~~d~~~ia~yw~~ql~~PVrF~~~I~~L~~~Gv~~FVE 472 (538)
T TIGR02816 401 VMDFYLQPLCAEL--------PMDIKFISAADLLAKNQNSEQAIDSQSIANSIADTFCQTLDFTALIHHAQEQGAKLFVE 472 (538)
T ss_pred HHHHHHHHHHhhc--------ccCCeeeecccccCcccCCCcCCCHHHHHHHHHHcCCCccCHHHHHHHHHHCCCCEEEE
Confidence 9999999998754 46899999984 54321110 001124689999999999999999999887 68999
Q ss_pred ECCChhhHHHHHhhhcCC---------CceeecccCCCCCchhhHHHHhhhhhhcCCCCchhhhcCC
Q psy8296 398 VAPHGLMQALLRRTTKDG---------CVNIPLCRRQTESPANFLLAALGQLHMNGLRPNIEALYEP 455 (700)
Q Consensus 398 iGP~~~L~~~~~~~l~~~---------~~~~~~l~r~~~~~~~~ll~~l~~L~~~G~~vd~~~l~~~ 455 (700)
||||++|+++++++++.. ...+++++++ .++...+++++|+||++|++|||..++++
T Consensus 473 IGPg~vLs~lv~~~l~~~~~~~~~~~~~~~l~sl~r~-~~d~~~ll~aLA~L~~~Gv~vdW~~l~~g 538 (538)
T TIGR02816 473 IGADRQNCTLIDKINKQDGASSEQHQPCCTVAANAKG-GEDITSLIKAIAQLISHQIPLSLQPFIDG 538 (538)
T ss_pred eCCChHHHHHHHHHhhcccccccccccceEeccCCCC-CchHHHHHHHHHHHHHCCCCCCchhcCCC
Confidence 999999999999987532 3578888888 78999999999999999999999998763
No 6
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=100.00 E-value=1.1e-52 Score=443.63 Aligned_cols=276 Identities=25% Similarity=0.296 Sum_probs=250.6
Q ss_pred CEEEEEcCCCCChhhhHHHHhh-cHHHHHHHHHHHhhhcccCCChhhhccCCCCCcchhhhhhhHhhhhhcccccccccc
Q psy8296 114 PVWFVYAGMGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCHQGCYVNRLL 192 (700)
Q Consensus 114 ~v~fvF~GQGsq~~gmg~~L~~-~p~fr~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~l~a~q~~~~~~~~~ 192 (700)
+++|+|+|||+||+|||++||+ +|.||+.+++|++++ |+++.+.+++.+...++++.++||++|++|
T Consensus 2 ~~~~~f~Gqg~~~~~m~~~l~~~~p~~~~~~~~~~~~l---g~~~~~~~~~~~~~~~~~~~~~q~~i~~~~--------- 69 (290)
T TIGR00128 2 KIAYVFPGQGSQTVGMGKDLYEQYPIAKELFDQASEAL---GYDLKKLCQEGPAEELNKTQYTQPALYVVS--------- 69 (290)
T ss_pred CEEEEECCCCcchhhhHHHHHHcCHHHHHHHHHHHHHh---CcCHHHHHhCCCHHHhccccchhHHHHHHH---------
Confidence 5899999999999999999998 999999999999987 999999998655555678899999999999
Q ss_pred chhhHHHHHHHHHHcC-CCcCEEEeCChHHHHHHHHhcCCCHHHHHHHHHHHhHhhhhcccCCCCcEEEE-cCCHHhHhC
Q psy8296 193 GALKKIGLTEILRAVG-IEPDGYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSV-GLNYKDLTD 270 (700)
Q Consensus 193 ~~~~~~Ala~ll~~~G-i~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~Rg~l~~~~~~~~~G~M~av-~~~~~~v~~ 270 (700)
||++++|++|| |+|++++|||+|||+|||+||++|++|++++++.||++|++....+.|.|+++ +.+.+++++
T Consensus 70 -----~al~~~l~~~g~i~p~~v~GhS~GE~aAa~~aG~ls~eda~~lv~~r~~~~~~~~~~~~g~m~av~~~~~~~~~~ 144 (290)
T TIGR00128 70 -----AILYLKLKEQGGLKPDFAAGHSLGEYSALVAAGALDFETALKLVKKRGELMQEAVPEGGGAMAAVIGLDEEQLAQ 144 (290)
T ss_pred -----HHHHHHHHHcCCCCCCEEeecCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEeCCCHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999987654457899998 888888888
Q ss_pred -CC----CCceEeEecCCCcEEEecChhhHHHHHHHHhcCCe-eEEEeccccCCCChhhHhhhHHHHHHHHhhhccCCCC
Q psy8296 271 -LP----PSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNI-FYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKK 344 (700)
Q Consensus 271 -l~----~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~~i-~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~ 344 (700)
+. ..+.|+|+|+|+++||||+++.++++.+.+++.++ +.+.|++ .+||||++|+++.+++.+.+..+.+ .+
T Consensus 145 ~l~~~~~~~v~ia~~nsp~~~visG~~~~l~~l~~~l~~~~~~~~~~L~v-~~~fHs~~l~~~~~~~~~~l~~~~~--~~ 221 (290)
T TIGR00128 145 ACEEATENDVDLANFNSPGQVVISGTKDGVEAAAALFKEMGAKRAVPLEV-SGAFHSRFMKPAAEKFAETLEACQF--ND 221 (290)
T ss_pred HHHhcCCCcEEEEEECCCCCEEEECCHHHHHHHHHHHHHcCCCeEEEcCC-CCCcccHHHHHHHHHHHHHHHcCCC--CC
Confidence 42 35999999999999999999999999999998886 6889999 4999999999999999999998876 67
Q ss_pred CCceEEeCCCCCCccCCccccCCChhHHHHhhccccchHHHHhhcccC--cEEEEECCChhhHHHHHhhhc
Q psy8296 345 RSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPEN--AIVIEVAPHGLMQALLRRTTK 413 (700)
Q Consensus 345 p~~~~~S~~~g~~~~~~~~~~~~~~~yw~~~l~~pV~F~~av~~l~~~--~~~iEiGP~~~L~~~~~~~l~ 413 (700)
|.+|++|+++|+.+... ...++||.+|+++||+|.++++.+.++ ++|||+||+++|+++++++++
T Consensus 222 p~ipi~S~~~g~~~~~~----~~~~~~~~~~l~~pV~f~~~i~~l~~~g~~~~ie~gp~~~l~~~~~~~~~ 288 (290)
T TIGR00128 222 PTVPVISNVDAKPYTNG----DRIKEKLSEQLTSPVRWTDSVEKLMARGVTEFAEVGPGKVLTGLIKRIKN 288 (290)
T ss_pred CCccEEECCCCCccCCH----HHHHHHHHHHccCCccHHHHHHHHHHCCCCEEEEECCchHHHHHHHHhcC
Confidence 89999999999876432 236789999999999999999999776 689999999999999998754
No 7
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=100.00 E-value=1.4e-51 Score=437.07 Aligned_cols=283 Identities=28% Similarity=0.482 Sum_probs=255.3
Q ss_pred EcCCCCChhhhHHHHhh-cHHHHHHHHHHHhhhcc-cCCChhhhccCCCC--CcchhhhhhhHhhhhhccccccccccch
Q psy8296 119 YAGMGSQWPGMARELMW-FAPFRQAIFECDRVYRP-LGLDIVKIITSDDP--TTFDDILNSFVAIVTCHQGCYVNRLLGA 194 (700)
Q Consensus 119 F~GQGsq~~gmg~~L~~-~p~fr~~~~~~~~~l~~-~g~~l~~~l~~~~~--~~~~~~~~~q~~l~a~q~~~~~~~~~~~ 194 (700)
|||||+||+|||++||+ +|.||+.+++|+++++. .|+++.+++...++ ..++++.++||++|++|
T Consensus 1 F~GQG~q~~~m~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~~~~~~~l~~~~~~q~~i~~~~----------- 69 (298)
T smart00827 1 FTGQGSQWPGMGRELYETEPVFRAALDECDAALQPLLGWSLLDVLFGEDGAASLLRRTEVAQPALFAVQ----------- 69 (298)
T ss_pred CCCCchhHHHHHHHHHHcCHHHHHHHHHHHHHHHHhcCCCHHHHHcCCCCchhhhcccchhHHHHHHHH-----------
Confidence 89999999999999998 99999999999999987 59999999986543 23578899999999999
Q ss_pred hhHHHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHHHHHhHhhhhcccCCCCcEEEEcCCHHhHhC-CC-
Q psy8296 195 LKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTD-LP- 272 (700)
Q Consensus 195 ~~~~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~Rg~l~~~~~~~~~G~M~av~~~~~~v~~-l~- 272 (700)
+|++++|+++|++|++++|||+|||+|+|++|+++++|++++++.|+.+|++.. .+|+|++|+++.+++++ +.
T Consensus 70 ---~a~~~~l~~~Gi~p~~~~GhSlGE~aA~~~ag~~~~~~~l~l~~~r~~~~~~~~--~~g~m~av~~~~~~~~~~l~~ 144 (298)
T smart00827 70 ---VALARLWRSWGVRPDAVVGHSLGEIAAAYVAGVLSLEDAARLVAARGRLMQALP--GGGAMLAVGLSEEEVEELLAG 144 (298)
T ss_pred ---HHHHHHHHHcCCcccEEEecCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC--CCCeEEEEeCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999753 47999999999999988 53
Q ss_pred --CCceEeEecCCCcEEEecChhhHHHHHHHHhcCCeeEEEeccccCCCChhhHhhhHHHHHHHHhhhccCCCCCCceEE
Q psy8296 273 --PSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKWI 350 (700)
Q Consensus 273 --~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~~i~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~p~~~~~ 350 (700)
..++|||+|+|+++||||+++.++++.+.++.+|+++++|++ .+||||++|+++.++|++.++.+.+ .+|.+|++
T Consensus 145 ~~~~~~ia~~ns~~~~visG~~~~l~~l~~~l~~~~~~~~~L~v-~~~fHs~~~~~~~~~~~~~l~~~~~--~~~~~pv~ 221 (298)
T smart00827 145 YGGRVSVAAVNGPSSVVLSGDEDAVDELAAALEARGIRARRLKV-DHAFHSPHMDPILDEFREALAGITP--RPPRIPFV 221 (298)
T ss_pred cCCcEEEEEEcCCCCEEEECCHHHHHHHHHHHHHCCceEEECCC-CCCCchHHHHHHHHHHHHHHhhCCC--CCCCCcEE
Confidence 469999999999999999999999999999999999999999 5999999999999999999998876 67899999
Q ss_pred eCCCCCCccCCccccCCChhHHHHhhccccchHHHHhhccc-C--cEEEEECCChhhHHHHHhhhcCC--Cceeeccc
Q psy8296 351 SSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPE-N--AIVIEVAPHGLMQALLRRTTKDG--CVNIPLCR 423 (700)
Q Consensus 351 S~~~g~~~~~~~~~~~~~~~yw~~~l~~pV~F~~av~~l~~-~--~~~iEiGP~~~L~~~~~~~l~~~--~~~~~~l~ 423 (700)
|+++|+.+... +..+++||.+|+++||+|.++++.+.+ . .+|||+||+++|++++++++++. ..+.++++
T Consensus 222 S~~~g~~~~~~---~~~~~~~l~~~l~~pV~~~~~i~~l~~~~g~~~~ie~Gp~~~l~~~~~~~~~~~~~~~~~~~~~ 296 (298)
T smart00827 222 STVTGELIDGA---ELDDAEYWVRNLREPVRFADAVRALLAEQGVTVFLEVGPHPVLTGPIKQTLPAAGGAVVVPSLR 296 (298)
T ss_pred eCCCCcccCCC---CCCCHHHHHHHhhccEeHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHHHHHhccCCceEEeecc
Confidence 99999987653 234599999999999999999999985 3 68999999999999999998653 24445444
No 8
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=100.00 E-value=2.4e-51 Score=442.91 Aligned_cols=280 Identities=19% Similarity=0.219 Sum_probs=250.7
Q ss_pred CCCCCCEEEEEcCCCCChhhhHHHHhh-cHHHHHHHHHHHhhhcccCCChhhhccCCCCCcchhhhhhhHhhhhhccccc
Q psy8296 109 QPIKRPVWFVYAGMGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCHQGCY 187 (700)
Q Consensus 109 ~~~~~~v~fvF~GQGsq~~gmg~~L~~-~p~fr~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~l~a~q~~~~ 187 (700)
...+++++|+|||||+||+|||++ |+ +|.||+.+++|++.+ |+++.++++..+.+.++++.++||+||++|
T Consensus 34 ~~~~~~~a~lFpGQGsq~~gm~~~-~~~~p~~~~~~~~~~~~l---g~~l~~~~~~~~~~~l~~~~~~qp~i~~~~---- 105 (343)
T PLN02752 34 ADYKPTTAFLFPGQGAQAVGMGKE-AAEVPAAKALFDKASEIL---GYDLLDVCVNGPKEKLDSTVVSQPAIYVAS---- 105 (343)
T ss_pred cCCCCCEEEEECCCCcchhhHHHH-HHhCHHHHHHHHHHHHHh---CCCHHHHHhcCCHHHHhcchhhhHHHHHHH----
Confidence 456678999999999999999999 66 999999999999886 999999988766555788999999999999
Q ss_pred cccccchhhHHHHHHHHHHcCCCc------CEEEeCChHHHHHHHHhcCCCHHHHHHHHHHHhHhhhhcccCCCCcEEEE
Q psy8296 188 VNRLLGALKKIGLTEILRAVGIEP------DGYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSV 261 (700)
Q Consensus 188 ~~~~~~~~~~~Ala~ll~~~Gi~P------~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~Rg~l~~~~~~~~~G~M~av 261 (700)
||++++|+++|++| ++++|||+|||+|+|+||+++++|++++++.|+++|+......+|.|++|
T Consensus 106 ----------~a~~~~l~~~g~~~~~~~~~~~~~GHSlGE~aA~~~AG~ls~e~al~lv~~R~~~m~~~~~~~~g~m~av 175 (343)
T PLN02752 106 ----------LAAVEKLRARDGGQAVIDSVDVCAGLSLGEYTALVFAGALSFEDGLKLVKLRGEAMQAAADAGPSGMVSV 175 (343)
T ss_pred ----------HHHHHHHHhcCCCcccccCCCeeeeccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCccEEEE
Confidence 99999999999755 67899999999999999999999999999999999987544457899997
Q ss_pred -cCCHHhHhC-CC---------CCceEeEecCCCcEEEecChhhHHHHHHHHhcCC-eeEEEeccccCCCChhhHhhhHH
Q psy8296 262 -GLNYKDLTD-LP---------PSVDIACHNSDDNTTISGAQEDVEPYLEILKAKN-IFYRVVNSSFIAYHSRQVKPLAP 329 (700)
Q Consensus 262 -~~~~~~v~~-l~---------~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~~-i~~~~L~v~~~afHS~~m~~~~~ 329 (700)
+++.+++++ +. ..++|||+|+|+++||||+++.++++.+.++..+ +++++|+++ +||||++|+++.+
T Consensus 176 ~g~~~~~~~~~l~~~~~~~~~~~~v~IA~~Nsp~~~vIsG~~~~l~~l~~~l~~~~~~~~~~L~v~-~pfHsp~m~~~~~ 254 (343)
T PLN02752 176 IGLDSDKVQELCAAANEEVGEDDVVQIANYLCPGNYAVSGGKKGIDAVEAKAKSFKARMTVRLAVA-GAFHTSFMEPAVD 254 (343)
T ss_pred eCCCHHHHHHHHHHhhhccCCCCeEEEEEEcCCCCEEEECcHHHHHHHHHHHHhcCCceEEECCCC-CCcchHHHHHHHH
Confidence 889988887 42 3599999999999999999999999999888764 688999995 9999999999999
Q ss_pred HHHHHHhhhccCCCCCCceEEeCCCCCCccCCccccCCChhHHHHhhccccchHHHHhhcccC--cEEEEECCChhhHHH
Q psy8296 330 KVLELFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPEN--AIVIEVAPHGLMQAL 407 (700)
Q Consensus 330 ~~~~~l~~~~~~~~~p~~~~~S~~~g~~~~~~~~~~~~~~~yw~~~l~~pV~F~~av~~l~~~--~~~iEiGP~~~L~~~ 407 (700)
++.+.++.+.+ ++|.+|++|+++|+.+.+. ...++||.+|+++||+|.++++.+.+. ..|||+||+++|+++
T Consensus 255 ~l~~~l~~~~~--~~p~ipviS~~tg~~~~~~----~~~~~~l~~~l~~PV~~~~~i~~l~~~g~~~~iEiGP~~~L~~l 328 (343)
T PLN02752 255 ALEAALAAVEI--RTPRIPVISNVDAQPHSDP----ATIKKILARQVTSPVQWETTVKTLLEKGLEKSYELGPGKVIAGI 328 (343)
T ss_pred HHHHHHhcCCC--CCCCceEEEcCCCCccCCh----HHHHHHHHHHCcCCEEHHHHHHHHHHCCCCEEEEeCCcHHHHHH
Confidence 99999998876 6889999999999987542 236899999999999999999999876 579999999999999
Q ss_pred HHhhhc
Q psy8296 408 LRRTTK 413 (700)
Q Consensus 408 ~~~~l~ 413 (700)
++++.+
T Consensus 329 ~~~~~~ 334 (343)
T PLN02752 329 VKRVDK 334 (343)
T ss_pred HHHhhC
Confidence 998854
No 9
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=100.00 E-value=2.2e-51 Score=434.83 Aligned_cols=272 Identities=18% Similarity=0.211 Sum_probs=244.0
Q ss_pred EEEEEcCCCCChhhhHHHHhhcHHHHHHHHHHHhhhcccCCChhhhccCCCCCcchhhhhhhHhhhhhccccccccccch
Q psy8296 115 VWFVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCHQGCYVNRLLGA 194 (700)
Q Consensus 115 v~fvF~GQGsq~~gmg~~L~~~p~fr~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~l~a~q~~~~~~~~~~~ 194 (700)
++|+|||||+||+|||++|+++|.||+.+++|++.+ |+++.+ +. +...++++.++||++|++|
T Consensus 1 ~~~~F~GqG~q~~~m~~~l~~~p~~~~~~~~~~~~l---~~~~~~-~~--~~~~l~~~~~~qp~i~~~q----------- 63 (295)
T TIGR03131 1 IALLFPGQGSQRAGMLAELPDHPAVAAVLAEASDVL---GIDPRE-LD--DAEALASTRSAQLCILAAG----------- 63 (295)
T ss_pred CEEEECCcchhhhhHHHHHHhCHHHHHHHHHHHHHh---CcCHHH-cC--CHhhhccchhhhHHHHHHH-----------
Confidence 589999999999999999966999999999999997 788877 32 2234578899999999999
Q ss_pred hhHHHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHHHHHhHhhhhcccCCCCcEEEE-cCCHHhHhC-CC
Q psy8296 195 LKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSV-GLNYKDLTD-LP 272 (700)
Q Consensus 195 ~~~~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~Rg~l~~~~~~~~~G~M~av-~~~~~~v~~-l~ 272 (700)
||++++|+++|++|++++|||+|||+|||++|++|++|++++++.|+++|+... ++.++|++| +++.+++++ +.
T Consensus 64 ---~al~~~l~~~g~~P~~v~GhS~GE~aAa~~aG~~s~e~a~~lv~~r~~~~~~~~-~~~~~m~av~~~~~~~~~~~l~ 139 (295)
T TIGR03131 64 ---VAAWRALLALLPRPSAVAGYSVGEYAAAVVAGVLTFDDALRLVALRAALMDQAV-PGGYGMLAVLGLDLAAVEALIA 139 (295)
T ss_pred ---HHHHHHHHhcCCCCcEEeecCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-CCCCCEEEEeCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998654 336678776 899999988 53
Q ss_pred -CCceEeEecCCCcEEEecChhhHHHHHHHHhcCCe-eEEEeccccCCCChhhHhhhHHHHHHHHhhhccCCCCCCceEE
Q psy8296 273 -PSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNI-FYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKWI 350 (700)
Q Consensus 273 -~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~~i-~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~p~~~~~ 350 (700)
..++|||+|+|+++||||++++++++.+.+++.|+ ++++|+++ +||||++|+++.++|.+.++.+.. ++|.+|++
T Consensus 140 ~~~v~ia~~Nsp~~~visG~~~~l~~l~~~l~~~g~~~~~~l~v~-~afHs~~~~~~~~~~~~~l~~~~~--~~~~ip~~ 216 (295)
T TIGR03131 140 KHGVYLAIINAPDQVVIAGSRAALRAVAELARAAGASRAKRLAVR-VPSHTPLLAKAAEQFAEALAEIPL--AAPRLPYL 216 (295)
T ss_pred HcCEEEEEEcCCCCEEEECCHHHHHHHHHHHHhcCCceEEECCCC-CCcccHHHHHHHHHHHHHHhcCCC--CCCCceEE
Confidence 35999999999999999999999999999999998 99999995 999999999999999999998865 67899999
Q ss_pred eCCCCCCccCCccccCCChhHHHHhhccccchHHHHhhcccC--cEEEEECCChhhHHHHHhhhcC
Q psy8296 351 SSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPEN--AIVIEVAPHGLMQALLRRTTKD 414 (700)
Q Consensus 351 S~~~g~~~~~~~~~~~~~~~yw~~~l~~pV~F~~av~~l~~~--~~~iEiGP~~~L~~~~~~~l~~ 414 (700)
|+++|+.+... ...++||.+|+++||+|.++++.+.+. .+|||+||+++|+++++++++.
T Consensus 217 S~~~g~~~~~~----~~~~~~~~~~l~~pV~~~~~i~~l~~~g~~~~veiGp~~~l~~~~~~~~~~ 278 (295)
T TIGR03131 217 SGIDARLVRDA----AQIRDDLARQIATPVDWHDCMQAAYERGARLVIELGPGDVLTKLANEAFPE 278 (295)
T ss_pred ECCCCeecCCH----HHHHHHHHHHhcCCCcHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHhcCC
Confidence 99999976432 235799999999999999999999876 6899999999999999998753
No 10
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=100.00 E-value=2e-49 Score=413.92 Aligned_cols=278 Identities=24% Similarity=0.298 Sum_probs=254.4
Q ss_pred CCEEEEEcCCCCChhhhHHHHhh-cHHHHHHHHHHHhhhcccCCChhhhccCCCCCcchhhhhhhHhhhhhccccccccc
Q psy8296 113 RPVWFVYAGMGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCHQGCYVNRL 191 (700)
Q Consensus 113 ~~v~fvF~GQGsq~~gmg~~L~~-~p~fr~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~l~a~q~~~~~~~~ 191 (700)
.+++|+|||||+||.|||++||+ ++.+++.++++++.+ |+++.++++..++..+..+.++||+|++++
T Consensus 2 ~~~A~~FpGQGsQ~~gMg~~l~~~~~~a~~~~~~a~~~l---~~~l~~i~~~~p~~~L~~T~~tQPal~~~s-------- 70 (310)
T COG0331 2 SKTAFVFPGQGSQSLGMGKDLYENSPEAKETFDEADEAL---GFDLWALVFEGPEEELNLTQNTQPALLLVS-------- 70 (310)
T ss_pred CcceEEeCCchHHHHHhHHHHHhccHHHHHHHHHHHHHh---cccHHHHhcCCCHHHhcccchhhHHHHHHH--------
Confidence 46899999999999999999999 899999999999998 889999999877777899999999999999
Q ss_pred cchhhHHHHHHHHHHcC--CCcCEEEeCChHHHHHHHHhcCCCHHHHHHHHHHHhHhhhhcccCCCCcEEEE-cCCHHhH
Q psy8296 192 LGALKKIGLTEILRAVG--IEPDGYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSV-GLNYKDL 268 (700)
Q Consensus 192 ~~~~~~~Ala~ll~~~G--i~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~Rg~l~~~~~~~~~G~M~av-~~~~~~v 268 (700)
+|..+.|+..| ++|+.+.|||+|||+|++++|+++++|+++++..||.+|++....+.|+|.+| +++.+++
T Consensus 71 ------~a~~~~l~~~~~~~~p~~~aGHSlGEysAl~~ag~~~~ed~~~Lv~~RG~~M~~a~p~~~g~Maav~gl~~e~v 144 (310)
T COG0331 71 ------LAAYRVLAEQGLGVKPDFVAGHSLGEYSALAAAGVLSFEDALKLVRKRGKLMQEAVPRGEGGMAAVLGLDDEQV 144 (310)
T ss_pred ------HHHHHHHHHhcCCCCCceeecccHhHHHHHHHcccccHHHHHHHHHHHHHHHHHHccCCCccHHHHcCCCHHHH
Confidence 99999999866 99999999999999999999999999999999999999999876678999998 8899999
Q ss_pred hC-CC-----CCceEeEecCCCcEEEecChhhHHHHHHHHhcCC-eeEEEeccccCCCChhhHhhhHHHHHHHHhhhccC
Q psy8296 269 TD-LP-----PSVDIACHNSDDNTTISGAQEDVEPYLEILKAKN-IFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQN 341 (700)
Q Consensus 269 ~~-l~-----~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~~-i~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~ 341 (700)
++ |. ..|+||++|+|.|+||||..++++++.+.+++.| .+...|+|+ .||||++|+|+.++|.+.+..+.+
T Consensus 145 ~~~~~~~~~~~~v~iaN~N~~~QiVIsG~~~ale~a~~~~~~~g~kr~i~l~vs-~pfHs~lm~pa~~~~~~~l~~~~~- 222 (310)
T COG0331 145 EKACEEAAQGTVVEIANYNSPGQIVISGTKEALEKAAEILKEAGAKRAIPLPVS-GPFHSPLMKPAADELAEALEKVRF- 222 (310)
T ss_pred HHHHHHhccCCeEEEeeeCCCCcEEEECCHHHHHHHHHHHHHhhhhhhcccCCC-chhhhhhhHHHHHHHHHHHHhcCC-
Confidence 99 52 2499999999999999999999999999999998 346678896 899999999999999999999987
Q ss_pred CCCCCceEEeCCCCCCccCCccccCCChhHHHHhhccccchHHHHhhcccC--cEEEEECCChhhHHHHHhhhcC
Q psy8296 342 PKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPEN--AIVIEVAPHGLMQALLRRTTKD 414 (700)
Q Consensus 342 ~~~p~~~~~S~~~g~~~~~~~~~~~~~~~yw~~~l~~pV~F~~av~~l~~~--~~~iEiGP~~~L~~~~~~~l~~ 414 (700)
.++.+|++|++++....+. ....+-..+|+.+||+|.+.++.+.+. ..|+|+||+.+|++++|++.+.
T Consensus 223 -~~~~ipvi~n~~~~~~~~~----~~i~~~L~~q~~~pVrW~etv~~l~~~gv~~~~EiGpg~vL~gL~kri~~~ 292 (310)
T COG0331 223 -SDPLVPVISNVDAKPVLDG----EEIRELLAKQLTSPVRWTETVETLKADGVTRFVEIGPGKVLTGLAKRILKG 292 (310)
T ss_pred -CCccceeeeccccccccCH----HHHHHHHHHHhcCCeeHHHHHHHHHhcCceEEEEeCCcHHHHHHHHhhcCC
Confidence 7889999999999875433 236788999999999999999999886 5799999999999999998754
No 11
>KOG2926|consensus
Probab=100.00 E-value=1.4e-39 Score=328.17 Aligned_cols=277 Identities=22% Similarity=0.226 Sum_probs=244.8
Q ss_pred CCEEEEEcCCCCChhhhHHHHhhcHHHHHHHHHHHhhhcccCCChhhhccCCCCCcchhhhhhhHhhhhhcccccccccc
Q psy8296 113 RPVWFVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCHQGCYVNRLL 192 (700)
Q Consensus 113 ~~v~fvF~GQGsq~~gmg~~L~~~p~fr~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~l~a~q~~~~~~~~~ 192 (700)
.-.+++|||||+||.|||+.++++|..|+.+++|.+++ |++|.+++..++.+.++++.++||+|++..
T Consensus 62 e~s~iLFPGQG~q~vgm~q~~l~~p~a~~~~~~A~~vl---~YdLlki~~~gP~e~ldrT~~~QpAI~~~S--------- 129 (386)
T KOG2926|consen 62 ETSVILFPGQGAQSVGMGQYLLQNPAARRLFAEASNVL---GYDLLKICVNGPKEKLDRTVIAQPAIDVSS--------- 129 (386)
T ss_pred cceEEEeCCCChhhhhhhHHHHhCcchhHHHHHHHHHh---hHHHHHHHhcCccchhhcccccccceeccc---------
Confidence 45799999999999999999999999999999999998 999999999988888899999999999999
Q ss_pred chhhHHHHHHHHHHcC---CC-cCEEEeCChHHHHHHHHhcCCCHHHHHHHHHHHhHhhhhcccCCCCcEEEE-cCCHHh
Q psy8296 193 GALKKIGLTEILRAVG---IE-PDGYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSV-GLNYKD 267 (700)
Q Consensus 193 ~~~~~~Ala~ll~~~G---i~-P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~Rg~l~~~~~~~~~G~M~av-~~~~~~ 267 (700)
+|..+.|...| ++ -++..|||+|||+|.+++|+|++.+|++++..|+..|+....-.+++|..+ +.+..+
T Consensus 130 -----lAa~E~l~~~~p~~ie~~~~~aGfSlGEy~alvfa~aLsFs~alKlVk~Ra~AMs~a~~~~~~~m~~~~~~p~sk 204 (386)
T KOG2926|consen 130 -----LAALEQLRLLGPSIIENLVVTAGFSLGEYAALVFAGALSFSSALKLVKARAEAMSEASELVASGMVMILGLPTSK 204 (386)
T ss_pred -----HHHHHhccccCcchhheeeeeccccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccceeecCcHhH
Confidence 99999999988 44 467899999999999999999999999999999999998654447788776 566566
Q ss_pred HhC-C---------C--CCceEeEecCCCcEEEecChhhHHHHHHHHhcCCe-eEEEeccccCCCChhhHhhhHHHHHHH
Q psy8296 268 LTD-L---------P--PSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNI-FYRVVNSSFIAYHSRQVKPLAPKVLEL 334 (700)
Q Consensus 268 v~~-l---------~--~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~~i-~~~~L~v~~~afHS~~m~~~~~~~~~~ 334 (700)
+.. + . +.++||+||+|.++||+|..++|+-+.+..+.-++ +.++|.|+ .||||++|+|+.+.+.+.
T Consensus 205 ~~~~~~~a~~~~~~qe~~~~~VANyl~~~~~VvsG~~~~Le~lee~~~sf~~~r~~~LaVs-gAFHTr~MepAvepl~~A 283 (386)
T KOG2926|consen 205 VQKACASANQLSASQEYPVCEVANYLSPGQRVVSGLVKALESLEENAKSFKIRRMKRLAVS-GAFHTRLMEPAVEPLTKA 283 (386)
T ss_pred HHHHHhhhHHHhhhccCCeeeeeccCCCCcEEeeCcHHHHHHHHHHHHhhhhhhheeeeec-cccchhhhhhhHHHHHHH
Confidence 655 2 1 45899999999999999999999999977666655 47899996 899999999999999999
Q ss_pred HhhhccCCCCCCceEEeCCCCCCccCCccccCCChhHHHHhhccccchHHHHhhcccC-----cEEEEECCChhhHHHHH
Q psy8296 335 FQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPEN-----AIVIEVAPHGLMQALLR 409 (700)
Q Consensus 335 l~~~~~~~~~p~~~~~S~~~g~~~~~~~~~~~~~~~yw~~~l~~pV~F~~av~~l~~~-----~~~iEiGP~~~L~~~~~ 409 (700)
+..+.. +.|.+|+||+++|...... .....-+.+|+.+||+|.++++++.+. .-++|+|||.+|.+.++
T Consensus 284 l~~vei--~~p~~pViSNvdg~~~~~~----~hi~~~l~kQ~~rPV~we~~~~ti~sk~~~g~~~sye~GPG~~l~~ilk 357 (386)
T KOG2926|consen 284 LKAVEI--KNPVIPVISNVDGKPYRDP----GHILKQLAKQIVRPVQWEQTLKTIYSKQGVGFPRSYEVGPGRVLVAILK 357 (386)
T ss_pred HHHHHh--cCCCcceeecCCCcccCCh----HHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCceEeeCCcHHHHHHHH
Confidence 999987 7889999999999987632 235677899999999999999999765 45999999999999999
Q ss_pred hhhc
Q psy8296 410 RTTK 413 (700)
Q Consensus 410 ~~l~ 413 (700)
+...
T Consensus 358 ~~~~ 361 (386)
T KOG2926|consen 358 RNNP 361 (386)
T ss_pred HhCc
Confidence 8754
No 12
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=99.69 E-value=1.2e-16 Score=169.04 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=119.9
Q ss_pred ceeEEEecccccccccccceecCeeccchhhHHHHHHHHHHHhcccCCCceeEEEecCccceeEEEeCC-----------
Q psy8296 490 NEVTEVDLLNKEYRALFSHQVNGVVIPPLSLFLVDVYEKLCAQHHKNGLDETFVCEEYKMKSLVEVTST----------- 558 (700)
Q Consensus 490 ~~~~~~~l~~~~~p~L~dH~V~g~~v~Paa~ylemA~eA~~~~~~~~~~~~~~~l~dv~~~~~l~l~~~----------- 558 (700)
+.+|+..++.+++|||+||+|+|++|+||++|+||+++|+.+..+.. .+.|+|++|.+|+.+.++
T Consensus 15 ~~~~~~~l~~~~~~~l~dH~v~g~~i~Pga~~le~~~~Aa~~~~~~~----~~~l~~~~~~~pl~l~~~~~~~l~~~~~~ 90 (295)
T PF14765_consen 15 SVVFESRLSPDEHPFLRDHRVQGQPILPGAAYLEMALEAARQLSPSS----VVELRDLRFHRPLVLDEGEPRELRVELDP 90 (295)
T ss_dssp EEEEEEEECTTTTGGGGGEEETTEEEE-HHHHHHHHHHHHHHHTCSS----EEEEEEEEE-S-EEE-TTTEEEEEEEEEE
T ss_pred eEEEEEEECCccCchhhcCEECCEeeehhHHHHHHHHHHHHHhhCcc----cceEEEeEecccEEecCCCcEEEEEEEEE
Confidence 67899999988899999999999999999999999999998876543 589999999999887521
Q ss_pred ----c----eeEEEEEc---CeEee----------c--C---------------------CCccHHHHHHHHHhCCC---
Q psy8296 559 ----G----CHAQIVYN---GNLMV----------Y--L---------------------DTILKIKVFLELSEDGV--- 591 (700)
Q Consensus 559 ----~----~~F~I~S~---~~~~~----------~--~---------------------~~~~~~~~Y~~l~~~G~--- 591 (700)
. +.|+|+|. +..|. . . .+++.+++|+.+.+.|+
T Consensus 91 ~~~~~~~~~~~~~i~s~~~~~~~~~~h~~g~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Y~~~~~~gl~~g 170 (295)
T PF14765_consen 91 EEDGSGSMEWRFEIFSRNKDDSGWTLHASGQVSLDKDPPPEPPPLDLESLKARCPEPPDGEPLDIEEFYERLAERGLFYG 170 (295)
T ss_dssp ETTTTEEEEEEEEEEEEESTCCGEEEEEEEEEEEESSHC-SGGBGBHHHHHHHHHEECCCEEEHHHHHHHHHHHTTEEEH
T ss_pred ccCCCCccceEEEEEEecCCCcceEEeeeeEEEeeecccccccccccccccccccccccccccchHHHHHhHHhcCCccC
Confidence 1 37888882 11121 0 0 01234889999999998
Q ss_pred CCCcccccccccccccccCCCCceEEEEeecCC----------chhHHHHHHhhHhhhh--cCCCCceeccccccEEEEc
Q psy8296 592 PVFPSMLREFIMSTNQISNLNPGCHAQIVYNGN----------LMVYLDTILKIKVFLE--LSEDGVPVFPSMLREFIMS 659 (700)
Q Consensus 592 p~Fqgl~~i~~~~~~~~~~~~~~~~a~i~~~~~----------hP~~LD~~lQ~~~~a~--~~~~~~~~vP~~i~~l~i~ 659 (700)
|.||+|+++|. .++.+++.+++. ||++||+++|+.+++. .......++|++|+++.++
T Consensus 171 ~~fr~i~~i~~----------~~~~~~~~~~~~~~~~~~~~~l~P~llD~~lq~~~~~~~~~~~~~~~~lP~~i~~~~~~ 240 (295)
T PF14765_consen 171 PRFRGIESIRR----------GEALAEVRLPDDPASDPDPFVLHPALLDAALQAAGLALWEDDDRGRVFLPVSIERIRIF 240 (295)
T ss_dssp GGGHHEEEEEE----------SEEEEEEECGTTTGGGGGGSSS-HHHHHHHHHGHGCCHTSTTTTTSEEEEEEEEEEEES
T ss_pred Ccccchhhhhh----------ccceEEEEEEeeccCCCCceeECHHHHHHHHHHHHHHhccccCCCCEEcccEeCEEEEE
Confidence 99999996522 678999988753 7999999999765543 2355788999999999998
Q ss_pred c
Q psy8296 660 T 660 (700)
Q Consensus 660 ~ 660 (700)
.
T Consensus 241 ~ 241 (295)
T PF14765_consen 241 R 241 (295)
T ss_dssp S
T ss_pred e
Confidence 6
No 13
>smart00826 PKS_DH PKS_DH.
Probab=98.34 E-value=2e-06 Score=81.93 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=74.4
Q ss_pred ceeEEEecccccccccccceecCeeccchhhHHHHHHHHHHHhcccCCCceeEEEecCccceeEEEeCC-----------
Q psy8296 490 NEVTEVDLLNKEYRALFSHQVNGVVIPPLSLFLVDVYEKLCAQHHKNGLDETFVCEEYKMKSLVEVTST----------- 558 (700)
Q Consensus 490 ~~~~~~~l~~~~~p~L~dH~V~g~~v~Paa~ylemA~eA~~~~~~~~~~~~~~~l~dv~~~~~l~l~~~----------- 558 (700)
...|+..+..+..||+.||+++|.+++|+++|++|+++++.+..+. ..+.++|+.|.+|+.+.++
T Consensus 15 ~~~~~~~~~~~~~~~l~~h~v~~~~~~P~~~~~~~~~~a~~~~~~~----~~~~l~~~~~~~pl~~~~~~~~~~~~~~~~ 90 (167)
T smart00826 15 GVVFTGRLSLRTHPWLADHRVGGTVVLPGAAYVEMALAAADEVGCG----AAVRLEELTLEAPLVLPEDGAVEVQVVVGA 90 (167)
T ss_pred ceEEEEEeCCCCCchhhcCEECCEEEecHHHHHHHHHHHHHHhCCC----CCceEeEEEeccccccCCCCCEEEEEEEec
Confidence 3567888887788999999999999999999999999987655332 2356899999888766432
Q ss_pred -----ceeEEEEEcC---eEee-----------c----------------CCCccHHHHHHHHHhCCC---CCCccc
Q psy8296 559 -----GCHAQIVYNG---NLMV-----------Y----------------LDTILKIKVFLELSEDGV---PVFPSM 597 (700)
Q Consensus 559 -----~~~F~I~S~~---~~~~-----------~----------------~~~~~~~~~Y~~l~~~G~---p~Fqgl 597 (700)
...|++.+.. ..|. . ....+.+.+|+.+...|+ +.||+|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~g~~f~~~ 167 (167)
T smart00826 91 PDESGRRTFEVYSRPDGDGPWTRHATGTLRPAAAAPAAPAADLAAWPPAGAEPVDVADFYERLAARGLEYGPAFQGL 167 (167)
T ss_pred CCCCCceEEEEEeCCCCCCCceeeeEEEEecCCCCCCCCccccccCCCCCCcccCHHHHHHHHHhcCcccCccccCC
Confidence 1246665531 1121 0 011245789999999998 889875
No 14
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=97.77 E-value=6.6e-05 Score=98.63 Aligned_cols=156 Identities=13% Similarity=0.066 Sum_probs=105.0
Q ss_pred EEEecccccccccccceecCeeccchhhHHHHHHHHHHHhcccCCCceeEEEecCccceeEEEeCCc-ee-----EEEEE
Q psy8296 493 TEVDLLNKEYRALFSHQVNGVVIPPLSLFLVDVYEKLCAQHHKNGLDETFVCEEYKMKSLVEVTSTG-CH-----AQIVY 566 (700)
Q Consensus 493 ~~~~l~~~~~p~L~dH~V~g~~v~Paa~ylemA~eA~~~~~~~~~~~~~~~l~dv~~~~~l~l~~~~-~~-----F~I~S 566 (700)
....+.....|||.||+|+|.+|+|++.-++...+|+.+..+.. +.++|+++.+.++++.+. .+ |++..
T Consensus 2299 ~~~~l~~~~~pfl~dH~i~g~~vlP~~~~~~w~~~~~~~~~p~~-----~~~~d~~vlkgivfd~~~~~~~~~~~~~~~~ 2373 (2582)
T TIGR02813 2299 VMRTLDPKNMTFIADHCIGGDKVLPTVCAIAWMREAAMVALGAF-----VGVADYKLLKGVIFDGSEATEYIDMILQLEL 2373 (2582)
T ss_pred eEeeeccccCchHHhcccCCeeechHHHHHHHHHHHHHHhCCCc-----eeeeeeeeecceEecCCcccccccceEEEee
Confidence 34445566799999999999999999999999999988776521 678999999999886532 22 33321
Q ss_pred c--------------------CeEee-----cC-----CC--------------------ccHHHHHHHHHhCCC----C
Q psy8296 567 N--------------------GNLMV-----YL-----DT--------------------ILKIKVFLELSEDGV----P 592 (700)
Q Consensus 567 ~--------------------~~~~~-----~~-----~~--------------------~~~~~~Y~~l~~~G~----p 592 (700)
. +..+. .. .. .+...+|+ -|. |
T Consensus 2374 ~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~----~g~LFHGp 2449 (2582)
T TIGR02813 2374 TPLVVDTKISTTNEQALISFHYRPQYTAVLVAERKEAPTAELFLPEALPELLPETVLSSIEEAGALYS----NGTLFHGP 2449 (2582)
T ss_pred eeccccccccccccccccCCCCccceeeeeeccccccccccccCccccccccccccccccCccccccc----CCceecCc
Confidence 0 10000 00 00 01123443 253 9
Q ss_pred CCcccccccccccccccCCCCceEEEEeecCC-----------------chhHHHHHHhhHhhhhcCCCCceeccccccE
Q psy8296 593 VFPSMLREFIMSTNQISNLNPGCHAQIVYNGN-----------------LMVYLDTILKIKVFLELSEDGVPVFPSMLRE 655 (700)
Q Consensus 593 ~Fqgl~~i~~~~~~~~~~~~~~~~a~i~~~~~-----------------hP~~LD~~lQ~~~~a~~~~~~~~~vP~~i~~ 655 (700)
.||||++++.. +..+..++..++.. .|.++|.+||+++++.....+...+|.+|++
T Consensus 2450 ~~qgI~~v~~~-------~~~~~~~~~~~~~~~~~~~g~f~~~~~~~~~~p~~~D~~~Q~~~vW~~~~~g~~sLP~~~~~ 2522 (2582)
T TIGR02813 2450 RLQGIKAVLAF-------DDQGLLAKCQLPAVASLDCGEFPPSPLNSGSQPFAEDILLQAMLVWARLKYGAASLPSSIGE 2522 (2582)
T ss_pred chhhhHHhhhc-------CCcCceeEeecCCCChhhccCCccccCccccChhHHHHHHHHHHHHHHHhcCCCCCCcccce
Confidence 99999965322 23333444433321 2899999999999998876677899999999
Q ss_pred EEEccCCCC
Q psy8296 656 FIMSTNQIS 664 (700)
Q Consensus 656 l~i~~~~~~ 664 (700)
++++.....
T Consensus 2523 ~~~~~~~~~ 2531 (2582)
T TIGR02813 2523 FVSYRPVSL 2531 (2582)
T ss_pred EEEecCCCC
Confidence 999865443
No 15
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=87.85 E-value=1.3 Score=42.91 Aligned_cols=43 Identities=30% Similarity=0.217 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHH
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGG 240 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv 240 (700)
++..+.|.+.|++||.+.|-|.|-+.|++.+.-.+.++...+.
T Consensus 14 ~Gvl~aL~e~gi~~d~v~GtSaGAi~aa~~a~g~~~~~~~~~~ 56 (172)
T cd07198 14 VGVAKALRERGPLIDIIAGTSAGAIVAALLASGRDLEEALLLL 56 (172)
T ss_pred HHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCCHHHHHHHH
Confidence 8889999999999999999999999999888888888877765
No 16
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=82.70 E-value=2.7 Score=40.65 Aligned_cols=44 Identities=25% Similarity=0.163 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHHH
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGGY 241 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~ 241 (700)
+++.+.|++.|++||.+.|-|.|-+.|+..+--.+.++..+...
T Consensus 16 ~Gvl~~L~~~~~~~d~i~GtSaGal~a~~~a~g~~~~~~~~~~~ 59 (175)
T cd07205 16 IGVLKALEEAGIPIDIVSGTSAGAIVGALYAAGYSPEEIEERAK 59 (175)
T ss_pred HHHHHHHHHcCCCeeEEEEECHHHHHHHHHHcCCCHHHHHHHHH
Confidence 78888999999999999999999999988887778888766543
No 17
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=82.54 E-value=2.9 Score=41.08 Aligned_cols=44 Identities=20% Similarity=0.080 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHHH
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGGY 241 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~ 241 (700)
+++.+.|++.|++||.+.|-|.|-+.|+..+-..+.++...+..
T Consensus 15 ~Gvl~~L~e~~~~~d~i~GtSaGai~aa~~a~g~~~~~~~~~~~ 58 (194)
T cd07207 15 IGALKALEEAGILKKRVAGTSAGAITAALLALGYSAADIKDILK 58 (194)
T ss_pred HHHHHHHHHcCCCcceEEEECHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77888899999999999999999998887776678777665543
No 18
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=81.20 E-value=3.1 Score=44.32 Aligned_cols=41 Identities=32% Similarity=0.294 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHH
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACL 238 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~ 238 (700)
++..+.|.+.|++|++|.|-|+|.+.|+..|...+.++--.
T Consensus 27 iGVl~aL~e~gi~~~~iaGtS~GAiva~l~A~g~~~~~~~~ 67 (306)
T COG1752 27 IGVLKALEEAGIPIDVIAGTSAGAIVAALYAAGMDEDELEL 67 (306)
T ss_pred HHHHHHHHHcCCCccEEEecCHHHHHHHHHHcCCChhHHHH
Confidence 88999999999999999999999998887776666655333
No 19
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=80.86 E-value=3.1 Score=41.90 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCC
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFD 232 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls 232 (700)
++..+.|.+.|+++|.+.|-|.|-+.||..+.-.+
T Consensus 14 ~Gvl~aL~e~g~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 14 AGVLKALAEAGIEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCc
Confidence 88889999999999999999999998887777666
No 20
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=80.11 E-value=3.2 Score=45.59 Aligned_cols=43 Identities=19% Similarity=0.046 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHHH
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGGY 241 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~ 241 (700)
++..+.|.+.|+.|+.+.|-|.|.+.||..|. -+.+|...+..
T Consensus 99 ~Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~-~~~~e~~~~l~ 141 (391)
T cd07229 99 LGVVKALWLRGLLPRIITGTATGALIAALVGV-HTDEELLRFLD 141 (391)
T ss_pred HHHHHHHHHcCCCCceEEEecHHHHHHHHHHc-CCHHHHHHHHh
Confidence 88999999999999999999999999999888 57788777764
No 21
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=79.99 E-value=3.8 Score=42.81 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHH
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREAC 237 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai 237 (700)
+++.+.|++.||.+|.|.|-|+|.+.++..|--.+.++..
T Consensus 26 iGVL~aLeE~gi~~d~v~GtSaGAiiga~ya~g~~~~~~~ 65 (269)
T cd07227 26 IGILQALEEAGIPIDAIGGTSIGSFVGGLYAREADLVPIF 65 (269)
T ss_pred HHHHHHHHHcCCCccEEEEECHHHHHHHHHHcCCchHHHH
Confidence 8888999999999999999999998766555445665543
No 22
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=79.87 E-value=3.9 Score=43.60 Aligned_cols=42 Identities=26% Similarity=0.168 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHH
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLG 239 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~l 239 (700)
+++.+.|.+.||.||.|+|-|+|-+.++..+.-.+.++....
T Consensus 31 iGvL~aLee~gi~~d~v~GtSaGAi~ga~ya~g~~~~~~~~~ 72 (306)
T cd07225 31 IGVIKALEEAGIPVDMVGGTSIGAFIGALYAEERNISRMKQR 72 (306)
T ss_pred HHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCCHHHHHHH
Confidence 788899999999999999999999866655544666554443
No 23
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=79.66 E-value=4.1 Score=41.25 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHH
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGG 240 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv 240 (700)
++..+.|++.|++|+.+.|-|.|-+.|+..+-..+.++.....
T Consensus 16 ~GvL~aL~e~gi~~~~i~GtSaGAi~aa~~a~g~~~~~~~~~~ 58 (221)
T cd07210 16 LGFLAALLEMGLEPSAISGTSAGALVGGLFASGISPDEMAELL 58 (221)
T ss_pred HHHHHHHHHcCCCceEEEEeCHHHHHHHHHHcCCCHHHHHHHH
Confidence 8888999999999999999999999888877667777765543
No 24
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=76.76 E-value=11 Score=39.29 Aligned_cols=30 Identities=23% Similarity=0.100 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 199 GLTEILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 199 Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
+..+.++..|++|-.++|||+|-..|..++
T Consensus 88 ~ai~~L~~~~~~~v~LvG~SmGG~vAl~~A 117 (266)
T TIGR03101 88 AAYRWLIEQGHPPVTLWGLRLGALLALDAA 117 (266)
T ss_pred HHHHHHHhcCCCCEEEEEECHHHHHHHHHH
Confidence 345567778999999999999999888665
No 25
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=75.81 E-value=5.7 Score=38.47 Aligned_cols=39 Identities=28% Similarity=0.161 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHH
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREA 236 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~da 236 (700)
++..+.|++.|+.||.+.|-|.|-+.|+..+.-.+.++.
T Consensus 16 ~Gvl~~L~e~g~~~d~i~GtSaGAi~aa~~a~g~~~~~~ 54 (175)
T cd07228 16 IGVLRALEEEGIEIDIIAGSSIGALVGALYAAGHLDALE 54 (175)
T ss_pred HHHHHHHHHCCCCeeEEEEeCHHHHHHHHHHcCCCHHHH
Confidence 778888999999999999999999987777665665543
No 26
>PRK10279 hypothetical protein; Provisional
Probab=71.97 E-value=4.5 Score=42.98 Aligned_cols=33 Identities=42% Similarity=0.465 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHH-HHHhcC
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGV-AYADGC 230 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aA-a~~aG~ 230 (700)
++..+.|.+.||+||.|.|-|+|-+.+ +|++|.
T Consensus 21 iGVL~aL~E~gi~~d~i~GtS~GAlvga~yA~g~ 54 (300)
T PRK10279 21 IGVINALKKVGIEIDIVAGCSIGSLVGAAYACDR 54 (300)
T ss_pred HHHHHHHHHcCCCcCEEEEEcHHHHHHHHHHcCC
Confidence 889999999999999999999998766 566675
No 27
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=71.88 E-value=3.8 Score=41.19 Aligned_cols=33 Identities=27% Similarity=0.196 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCC
Q psy8296 199 GLTEILRAVGIEPDGYLGHSLGENGVAYADGCF 231 (700)
Q Consensus 199 Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~l 231 (700)
-+.+++...|+++-.++|||+|-..|..+|...
T Consensus 55 ~l~~~l~~~~~~~~~lvG~S~Gg~va~~~a~~~ 87 (242)
T PRK11126 55 LLSQTLQSYNILPYWLVGYSLGGRIAMYYACQG 87 (242)
T ss_pred HHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhC
Confidence 356778889999999999999999998887543
No 28
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=70.81 E-value=8.7 Score=40.91 Aligned_cols=42 Identities=19% Similarity=0.033 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHH
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGG 240 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv 240 (700)
++..+.|.+.|+.|+.+.|-|.|.+.||..+. -+.+|...+.
T Consensus 84 ~GVlkaL~e~gl~p~~i~GsSaGAivaa~~~~-~t~~El~~~~ 125 (323)
T cd07231 84 VGVVRTLVEHQLLPRVIAGSSVGSIVCAIIAT-RTDEELQSFF 125 (323)
T ss_pred HHHHHHHHHcCCCCCEEEEECHHHHHHHHHHc-CCHHHHHHHH
Confidence 88999999999999999999999998888776 5777766665
No 29
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=70.73 E-value=11 Score=38.51 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCc--CEEEeCChHHHHHHHHhcCCCHHHHHHHHHH
Q psy8296 198 IGLTEILRAVGIEP--DGYLGHSLGENGVAYADGCFDIREACLGGYA 242 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P--~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~ 242 (700)
++..+.|.+.||.| +.+.|-|.|-++|++.+-..+.++..++...
T Consensus 15 ~GVl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~~~~~~~~~~~ 61 (233)
T cd07224 15 LGVLSLLIEAGVINETTPLAGASAGSLAAACSASGLSPEEALEATEE 61 (233)
T ss_pred HHHHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999999985 5899999999988877766778777665543
No 30
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=69.54 E-value=16 Score=35.82 Aligned_cols=31 Identities=32% Similarity=0.376 Sum_probs=24.1
Q ss_pred HHHHHHHcCCCcCEEEeCChHHHHHHHHhcC
Q psy8296 200 LTEILRAVGIEPDGYLGHSLGENGVAYADGC 230 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ 230 (700)
+..+++.++.++-.++|||+|-..|+.++..
T Consensus 60 ~~~~~~~~~~~~~~l~G~S~Gg~ia~~~a~~ 90 (251)
T TIGR03695 60 LATLLDQLGIEPFFLVGYSMGGRIALYYALQ 90 (251)
T ss_pred HHHHHHHcCCCeEEEEEeccHHHHHHHHHHh
Confidence 3345567788999999999999888777643
No 31
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=69.06 E-value=10 Score=40.18 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHhc
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYADG 229 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 229 (700)
++..+.|.+.|+.|+.+.|-|.|.+.|+..+-
T Consensus 85 ~Gvl~aL~e~~l~~~~i~GtSaGAi~aa~~~~ 116 (298)
T cd07206 85 LGVVKALWEQDLLPRVISGSSAGAIVAALLGT 116 (298)
T ss_pred HHHHHHHHHcCCCCCEEEEEcHHHHHHHHHHc
Confidence 88899999999999999999999988776653
No 32
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=67.66 E-value=5.1 Score=36.24 Aligned_cols=59 Identities=15% Similarity=0.004 Sum_probs=41.3
Q ss_pred EEecccccccccccceecCeeccchhhHHHHHHHHHHHhcccCC------Ccee--EEEecCccceeEE
Q psy8296 494 EVDLLNKEYRALFSHQVNGVVIPPLSLFLVDVYEKLCAQHHKNG------LDET--FVCEEYKMKSLVE 554 (700)
Q Consensus 494 ~~~l~~~~~p~L~dH~V~g~~v~Paa~ylemA~eA~~~~~~~~~------~~~~--~~l~dv~~~~~l~ 554 (700)
+.+++ .+.+|+.+|- .|.+++||+..+|++.+++....+... ...+ ..+++++|.+++.
T Consensus 24 ~~~i~-~~~~~~~~hf-p~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~ 90 (131)
T cd00493 24 EKNVT-PNEPFFQGHF-PGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVL 90 (131)
T ss_pred EEecC-CCChhhcccC-CCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcC
Confidence 34453 4578999998 888999999999999888766543211 1112 3457888888765
No 33
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=67.32 E-value=13 Score=38.38 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=35.8
Q ss_pred HHHHHHHHHcC--CCcCEEEeCChHHHHHHHHhcCCCHHHHHHHH
Q psy8296 198 IGLTEILRAVG--IEPDGYLGHSLGENGVAYADGCFDIREACLGG 240 (700)
Q Consensus 198 ~Ala~ll~~~G--i~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv 240 (700)
++.++.|++.| +.++.+.|-|.|-++|++.+-..+.++..+..
T Consensus 16 ~GVl~aL~e~g~~~~~d~i~GtSAGAl~aa~~a~g~~~~~~~~~~ 60 (245)
T cd07218 16 VGVAVCLKKYAPHLLLNKISGASAGALAACCLLCDLPLGEMTSDF 60 (245)
T ss_pred HHHHHHHHHhCcccCCCeEEEEcHHHHHHHHHHhCCcHHHHHHHH
Confidence 88999999999 55899999999999998887777777665443
No 34
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=66.51 E-value=11 Score=41.95 Aligned_cols=42 Identities=19% Similarity=-0.002 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHH
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGG 240 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv 240 (700)
++..+.|.+.|+.|+.+.|-|.|.+.||..+. -+.++..++.
T Consensus 83 ~GVlkaL~e~gllp~iI~GtSAGAivaalla~-~t~~el~~~~ 124 (407)
T cd07232 83 FGVVKALLDADLLPNVISGTSGGSLVAALLCT-RTDEELKQLL 124 (407)
T ss_pred HHHHHHHHhCCCCCCEEEEECHHHHHHHHHHc-CCHHHHHHHH
Confidence 78899999999999999999999998887775 5666665554
No 35
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=64.40 E-value=6.3 Score=40.26 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 199 GLTEILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 199 Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
.+.++++..+++|..++|||+|-..|+.++
T Consensus 84 ~l~~~i~~~~~~~~~lvG~S~Gg~~a~~~a 113 (278)
T TIGR03056 84 DLSALCAAEGLSPDGVIGHSAGAAIALRLA 113 (278)
T ss_pred HHHHHHHHcCCCCceEEEECccHHHHHHHH
Confidence 345667788999999999999998887664
No 36
>PRK13604 luxD acyl transferase; Provisional
Probab=64.28 E-value=24 Score=37.61 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCCcCEEEeCChHHHHHHHHhc
Q psy8296 199 GLTEILRAVGIEPDGYLGHSLGENGVAYADG 229 (700)
Q Consensus 199 Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 229 (700)
+..+.+++.+..+-.++|||+|-.+|..+|+
T Consensus 97 aaid~lk~~~~~~I~LiG~SmGgava~~~A~ 127 (307)
T PRK13604 97 TVVDWLNTRGINNLGLIAASLSARIAYEVIN 127 (307)
T ss_pred HHHHHHHhcCCCceEEEEECHHHHHHHHHhc
Confidence 4445566678888899999999999766553
No 37
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=64.24 E-value=13 Score=41.56 Aligned_cols=42 Identities=21% Similarity=0.017 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHH
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREACLGG 240 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv 240 (700)
++..+.|.+.|+.|+.+.|-|.|-+.||..+. -+.++..++.
T Consensus 89 iGVLkaL~E~gl~p~vIsGTSaGAivAal~as-~~~eel~~~l 130 (421)
T cd07230 89 IGVLKALFEANLLPRIISGSSAGSIVAAILCT-HTDEEIPELL 130 (421)
T ss_pred HHHHHHHHHcCCCCCEEEEECHHHHHHHHHHc-CCHHHHHHHH
Confidence 78889999999999999999999998877665 5667655544
No 38
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=62.77 E-value=7.6 Score=40.19 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=24.6
Q ss_pred HHHHHHcCCCcCEEEeCChHHHHHHHHhc
Q psy8296 201 TEILRAVGIEPDGYLGHSLGENGVAYADG 229 (700)
Q Consensus 201 a~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 229 (700)
.+++..+++++-.++|||+|-+.|+.+|-
T Consensus 82 ~~~i~~l~~~~~~LvG~S~GG~va~~~a~ 110 (276)
T TIGR02240 82 ARMLDYLDYGQVNAIGVSWGGALAQQFAH 110 (276)
T ss_pred HHHHHHhCcCceEEEEECHHHHHHHHHHH
Confidence 45677789999999999999999888773
No 39
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=62.16 E-value=19 Score=36.96 Aligned_cols=44 Identities=23% Similarity=0.177 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCC--c--CEEEeCChHHHHHHHHhcCCCHHHHHHHHH
Q psy8296 198 IGLTEILRAVGIE--P--DGYLGHSLGENGVAYADGCFDIREACLGGY 241 (700)
Q Consensus 198 ~Ala~ll~~~Gi~--P--~~v~GHS~GE~aAa~~aG~lsl~dai~lv~ 241 (700)
++.++.|.+.|++ + +.+.|-|.|-++|++.+-..+.++......
T Consensus 15 ~GVl~~L~e~g~~l~~~~~~i~GtSAGAl~aa~~a~g~~~~~~~~~~~ 62 (243)
T cd07204 15 VGVASALREHAPRLLQNARRIAGASAGAIVAAVVLCGVSMEEACSFIL 62 (243)
T ss_pred HHHHHHHHHcCcccccCCCEEEEEcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8899999999987 3 599999999998887776777777654443
No 40
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=61.83 E-value=8 Score=40.39 Aligned_cols=31 Identities=19% Similarity=0.045 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
-.+..++.++++++..++|||+|-..|+..|
T Consensus 90 ~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a 120 (294)
T PLN02824 90 EQLNDFCSDVVGDPAFVICNSVGGVVGLQAA 120 (294)
T ss_pred HHHHHHHHHhcCCCeEEEEeCHHHHHHHHHH
Confidence 3566778888999999999999999888776
No 41
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=60.87 E-value=21 Score=36.98 Aligned_cols=44 Identities=14% Similarity=0.069 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCC----cCEEEeCChHHHHHHHHhcCCCHHHHHHHHH
Q psy8296 198 IGLTEILRAVGIE----PDGYLGHSLGENGVAYADGCFDIREACLGGY 241 (700)
Q Consensus 198 ~Ala~ll~~~Gi~----P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~ 241 (700)
++..+.|.+.|+. ++.++|-|.|-++|++.+-..+.++..+...
T Consensus 16 ~GVl~aL~e~~~~l~~~~~~i~GtSAGAl~aa~~asg~~~~~~~~~~~ 63 (252)
T cd07221 16 VGVTRCLSERAPHLLRDARMFFGASAGALHCVTFLSGLPLDQILQILM 63 (252)
T ss_pred HHHHHHHHHhCcchhccCCEEEEEcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8899999999987 8999999999998887766667777666654
No 42
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=60.41 E-value=21 Score=36.82 Aligned_cols=43 Identities=14% Similarity=0.006 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCC----cCEEEeCChHHHHHHHHhcCCCHHHHHHHH
Q psy8296 198 IGLTEILRAVGIE----PDGYLGHSLGENGVAYADGCFDIREACLGG 240 (700)
Q Consensus 198 ~Ala~ll~~~Gi~----P~~v~GHS~GE~aAa~~aG~lsl~dai~lv 240 (700)
++.++.|.+.|+. ++.+.|-|.|-++|++.+-..+.++....+
T Consensus 20 ~GVl~~L~e~g~~l~~~~~~i~G~SAGAl~aa~~a~g~~~~~~~~~~ 66 (249)
T cd07220 20 VGVASCLLEHAPFLVANARKIYGASAGALTATALVTGVCLGECGASV 66 (249)
T ss_pred HHHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 8899999999987 899999999999888766556776644443
No 43
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=58.83 E-value=10 Score=34.38 Aligned_cols=61 Identities=11% Similarity=-0.041 Sum_probs=40.8
Q ss_pred EEEecccccccccccceecCeeccchhhHHHHHHHHHHHhcccC----CCce--eEEEecCccceeEEE
Q psy8296 493 TEVDLLNKEYRALFSHQVNGVVIPPLSLFLVDVYEKLCAQHHKN----GLDE--TFVCEEYKMKSLVEV 555 (700)
Q Consensus 493 ~~~~l~~~~~p~L~dH~V~g~~v~Paa~ylemA~eA~~~~~~~~----~~~~--~~~l~dv~~~~~l~l 555 (700)
...+++ .+.+|++||- .|.+++||..-+|++.+++....... .... ...+++++|.+|+..
T Consensus 24 ~~~~v~-~d~~~~~~hf-~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~p 90 (131)
T cd01288 24 AIKNVT-INEPFFQGHF-PGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVP 90 (131)
T ss_pred EEEEec-CCChhhcCCC-CCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCC
Confidence 344453 3578999994 89999999999998888765442211 1112 234588999987653
No 44
>PRK00870 haloalkane dehalogenase; Provisional
Probab=58.25 E-value=10 Score=39.93 Aligned_cols=29 Identities=3% Similarity=-0.062 Sum_probs=24.6
Q ss_pred HHHHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 200 LTEILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
+.+++.+.|+++-.++|||+|-+.|...+
T Consensus 105 l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a 133 (302)
T PRK00870 105 MRSWFEQLDLTDVTLVCQDWGGLIGLRLA 133 (302)
T ss_pred HHHHHHHcCCCCEEEEEEChHHHHHHHHH
Confidence 55677889999999999999998887665
No 45
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=57.92 E-value=12 Score=38.80 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCC-cCEEEeCChHHHHHHH-HhcCC
Q psy8296 198 IGLTEILRAVGIE-PDGYLGHSLGENGVAY-ADGCF 231 (700)
Q Consensus 198 ~Ala~ll~~~Gi~-P~~v~GHS~GE~aAa~-~aG~l 231 (700)
+++.+.|.+.|+. +|.++|-|.|-+.|+. ++|.-
T Consensus 14 ~Gvl~al~e~~~~~fd~i~GtSaGAi~a~~~~~g~~ 49 (266)
T cd07208 14 AGVLDAFLEAGIRPFDLVIGVSAGALNAASYLSGQR 49 (266)
T ss_pred HHHHHHHHHcCCCCCCEEEEECHHHHhHHHHHhCCc
Confidence 7888999999999 9999999999987765 56654
No 46
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=57.82 E-value=33 Score=37.06 Aligned_cols=101 Identities=22% Similarity=0.176 Sum_probs=56.8
Q ss_pred CCCCEEEEEcCCCCChhhhHHHHhhcHHHHHHHHHHHhhhcc---cCCC-hhhhccCCCCCcchhhhhhhHhhhhhcccc
Q psy8296 111 IKRPVWFVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRP---LGLD-IVKIITSDDPTTFDDILNSFVAIVTCHQGC 186 (700)
Q Consensus 111 ~~~~v~fvF~GQGsq~~gmg~~L~~~p~fr~~~~~~~~~l~~---~g~~-l~~~l~~~~~~~~~~~~~~q~~l~a~q~~~ 186 (700)
..++++..++|-|-++....+.|+..|..++-+ ..++-+ +|.. ..+-. ...-....|. ..+-.....+
T Consensus 90 ~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi---~s~~le~Pyyg~RkP~~Q~-~s~l~~VsDl-~~~g~~~i~E--- 161 (348)
T PF09752_consen 90 PYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGI---ASLILENPYYGQRKPKDQR-RSSLRNVSDL-FVMGRATILE--- 161 (348)
T ss_pred CCCceEEEecCCCccchhhhhhhhhhHHHHcCc---ceEEEecccccccChhHhh-cccccchhHH-HHHHhHHHHH---
Confidence 347899999999999888777776656555422 122211 1110 00000 0000001111 1111112222
Q ss_pred ccccccchhhHHHHHHHHHHcCCCcCEEEeCChHHHHHHHHhc
Q psy8296 187 YVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADG 229 (700)
Q Consensus 187 ~~~~~~~~~~~~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 229 (700)
--+|.+.+++.|..|-.+.|-|+|-.-|+.+|.
T Consensus 162 ----------~~~Ll~Wl~~~G~~~~g~~G~SmGG~~A~laa~ 194 (348)
T PF09752_consen 162 ----------SRALLHWLEREGYGPLGLTGISMGGHMAALAAS 194 (348)
T ss_pred ----------HHHHHHHHHhcCCCceEEEEechhHhhHHhhhh
Confidence 166788888889999999999999988876654
No 47
>PRK03592 haloalkane dehalogenase; Provisional
Probab=57.67 E-value=10 Score=39.54 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=24.8
Q ss_pred HHHHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 200 LTEILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
+..++..+|+++..++|||+|-+.|...+
T Consensus 83 l~~ll~~l~~~~~~lvGhS~Gg~ia~~~a 111 (295)
T PRK03592 83 LDAWFDALGLDDVVLVGHDWGSALGFDWA 111 (295)
T ss_pred HHHHHHHhCCCCeEEEEECHHHHHHHHHH
Confidence 55677889999999999999998887655
No 48
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=56.48 E-value=6.4 Score=36.44 Aligned_cols=60 Identities=10% Similarity=-0.043 Sum_probs=35.8
Q ss_pred EEEecccccccccccceecCeeccchhhHHHHHHHHHHHhcccC-----CC---ce--eEEEecCccceeEE
Q psy8296 493 TEVDLLNKEYRALFSHQVNGVVIPPLSLFLVDVYEKLCAQHHKN-----GL---DE--TFVCEEYKMKSLVE 554 (700)
Q Consensus 493 ~~~~l~~~~~p~L~dH~V~g~~v~Paa~ylemA~eA~~~~~~~~-----~~---~~--~~~l~dv~~~~~l~ 554 (700)
-+.++. .+.+|+.+|= .|.+++||+..+|++.+++..+.... .. .. ...+++++|.+++.
T Consensus 29 a~~~v~-~~~~~f~gHF-p~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~ 98 (138)
T PF07977_consen 29 ARKNVT-PDEPFFDGHF-PGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVKFRGPVY 98 (138)
T ss_dssp EEEEE--TTSGGGGCST-TTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEEE-S-B-
T ss_pred EEEEeC-CCCCEEEcCC-CCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEEECccEe
Confidence 334443 4478999997 89999999999999888876543211 11 11 23578889888664
No 49
>PRK11071 esterase YqiA; Provisional
Probab=56.43 E-value=12 Score=36.67 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=25.6
Q ss_pred HHHHHHHcCCCcCEEEeCChHHHHHHHHhcC
Q psy8296 200 LTEILRAVGIEPDGYLGHSLGENGVAYADGC 230 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ 230 (700)
+.+++...|+++-.++|||+|-+.|++.|..
T Consensus 51 l~~l~~~~~~~~~~lvG~S~Gg~~a~~~a~~ 81 (190)
T PRK11071 51 LESLVLEHGGDPLGLVGSSLGGYYATWLSQC 81 (190)
T ss_pred HHHHHHHcCCCCeEEEEECHHHHHHHHHHHH
Confidence 3456677899999999999999999987743
No 50
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=56.06 E-value=13 Score=35.78 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 199 GLTEILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 199 Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
.+.++++..+.++-.++|||+|-..|..++
T Consensus 55 ~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a 84 (228)
T PF12697_consen 55 DLAELLDALGIKKVILVGHSMGGMIALRLA 84 (228)
T ss_dssp HHHHHHHHTTTSSEEEEEETHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccccc
Confidence 456788889999999999999998888776
No 51
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=54.23 E-value=28 Score=38.05 Aligned_cols=44 Identities=18% Similarity=0.080 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCC----CcCEEEeCChHHHHHHHHhcCCCHHHHHHHHH
Q psy8296 198 IGLTEILRAVGI----EPDGYLGHSLGENGVAYADGCFDIREACLGGY 241 (700)
Q Consensus 198 ~Ala~ll~~~Gi----~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~ 241 (700)
++.++.|.+.|+ ..+.++|-|.|-++|+..+-..+.++..++..
T Consensus 28 vGVl~aL~E~gp~ll~~~d~IaGtSAGALvAAl~asG~s~de~~r~~~ 75 (382)
T cd07219 28 AGVVDALRDLAPRMLETAHRVAGTSAGSVIAALVVCGISMDEYLRVLN 75 (382)
T ss_pred HHHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 899999999985 37999999999998887776678888877764
No 52
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=54.23 E-value=13 Score=40.01 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCCcC-EEEeCChHHHHHHHHhc
Q psy8296 199 GLTEILRAVGIEPD-GYLGHSLGENGVAYADG 229 (700)
Q Consensus 199 Ala~ll~~~Gi~P~-~v~GHS~GE~aAa~~aG 229 (700)
.+..++...|+++. .++|||+|-+.|...+.
T Consensus 126 dl~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~ 157 (343)
T PRK08775 126 AIALLLDALGIARLHAFVGYSYGALVGLQFAS 157 (343)
T ss_pred HHHHHHHHcCCCcceEEEEECHHHHHHHHHHH
Confidence 35678888999765 79999999998887763
No 53
>PLN02965 Probable pheophorbidase
Probab=52.59 E-value=13 Score=37.99 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=23.6
Q ss_pred HHHHHHHcCC-CcCEEEeCChHHHHHHHHh
Q psy8296 200 LTEILRAVGI-EPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 200 la~ll~~~Gi-~P~~v~GHS~GE~aAa~~a 228 (700)
+.+++...|+ ++-.++|||+|-..|..++
T Consensus 61 l~~~l~~l~~~~~~~lvGhSmGG~ia~~~a 90 (255)
T PLN02965 61 LFALLSDLPPDHKVILVGHSIGGGSVTEAL 90 (255)
T ss_pred HHHHHHhcCCCCCEEEEecCcchHHHHHHH
Confidence 5567778888 5999999999998777665
No 54
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=51.48 E-value=14 Score=38.10 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=25.3
Q ss_pred HHHHHHHcCCCcCEEEeCChHHHHHHHHhc
Q psy8296 200 LTEILRAVGIEPDGYLGHSLGENGVAYADG 229 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 229 (700)
+.+++...|+++-.++|||+|-+.|...+.
T Consensus 91 l~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~ 120 (282)
T TIGR03343 91 VKGLMDALDIEKAHLVGNSMGGATALNFAL 120 (282)
T ss_pred HHHHHHHcCCCCeeEEEECchHHHHHHHHH
Confidence 456778889999999999999998887764
No 55
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=50.19 E-value=41 Score=33.14 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCcCEEEeCChHHHHHHHHhcCCCHHH
Q psy8296 200 LTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIRE 235 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~lsl~d 235 (700)
+-...+.||.+--.++|+|+|.=..-.+...|+.+.
T Consensus 58 i~~y~~~w~~~~vvLiGYSFGADvlP~~~nrLp~~~ 93 (192)
T PF06057_consen 58 IRHYRARWGRKRVVLIGYSFGADVLPFIYNRLPAAL 93 (192)
T ss_pred HHHHHHHhCCceEEEEeecCCchhHHHHHhhCCHHH
Confidence 445567899999999999999866666666666543
No 56
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=49.31 E-value=40 Score=36.00 Aligned_cols=47 Identities=19% Similarity=-0.049 Sum_probs=35.6
Q ss_pred HHHHHHHHH-cCCC----cCEEEeCChHHHHHHHHhcCCCHHHHHHHHHHHh
Q psy8296 198 IGLTEILRA-VGIE----PDGYLGHSLGENGVAYADGCFDIREACLGGYARG 244 (700)
Q Consensus 198 ~Ala~ll~~-~Gi~----P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~Rg 244 (700)
+.+-+.|+. .|++ +|.+.|-|.|-+.|+..+--++.+|...+....+
T Consensus 15 i~vL~~le~~~g~~i~~~fD~i~GTStGgiIA~~la~g~s~~e~~~~y~~~~ 66 (312)
T cd07212 15 IQMLIAIEKALGRPIRELFDWIAGTSTGGILALALLHGKSLREARRLYLRMK 66 (312)
T ss_pred HHHHHHHHHHhCCCchhhccEEEeeChHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 444455555 5876 7999999999988877776789999888755433
No 57
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=49.18 E-value=16 Score=39.64 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=22.9
Q ss_pred HHHHHHHcCCCcCEEEeCChHHHHHHHH
Q psy8296 200 LTEILRAVGIEPDGYLGHSLGENGVAYA 227 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~GE~aAa~~ 227 (700)
+.+++...|+++-.++|||+|-+.|..+
T Consensus 145 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~ 172 (360)
T PLN02679 145 ILDFLEEVVQKPTVLIGNSVGSLACVIA 172 (360)
T ss_pred HHHHHHHhcCCCeEEEEECHHHHHHHHH
Confidence 4566778899999999999999877644
No 58
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=49.12 E-value=17 Score=39.22 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCCc-CEEEeCChHHHHHHHHh
Q psy8296 199 GLTEILRAVGIEP-DGYLGHSLGENGVAYAD 228 (700)
Q Consensus 199 Ala~ll~~~Gi~P-~~v~GHS~GE~aAa~~a 228 (700)
.+..++..+|+.+ ..++|||+|-+.|...+
T Consensus 115 ~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a 145 (351)
T TIGR01392 115 AQKLLLDHLGIEQIAAVVGGSMGGMQALEWA 145 (351)
T ss_pred HHHHHHHHcCCCCceEEEEECHHHHHHHHHH
Confidence 3456778899998 89999999998887665
No 59
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5. PNPLA5, also known as GS2L (GS2-like), plays a role in regulation of adipocyte differentiation. PNPLA5 is expressed in brain tissue in high mRNA levels and low levels in liver tissue. There is no concrete evidence in support of the enzymatic activity of GS2L. This family includes patatin-like proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like phospholipase domain-containing protein 5) reported exclusively in mammals.
Probab=49.12 E-value=35 Score=37.39 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCC----cCEEEeCChHHHHHHHHhcCCCHHHHHHHHHHH
Q psy8296 198 IGLTEILRAVGIE----PDGYLGHSLGENGVAYADGCFDIREACLGGYAR 243 (700)
Q Consensus 198 ~Ala~ll~~~Gi~----P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~R 243 (700)
++.++.|.+.|.+ ++.+.|-|.|.++||+.+...+++++...++.-
T Consensus 25 vGV~~~L~e~~p~ll~~~~~iaGaSAGAL~aa~~a~g~~~~~~~~~i~~i 74 (405)
T cd07223 25 VGVTECLRQRAPRLLQGARRIYGSSSGALNAVSIVCGKSADFCCSNLLGM 74 (405)
T ss_pred HHHHHHHHHhCchhhccCCeeeeeCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8999999988833 567999999999999999999999666655543
No 60
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=48.17 E-value=17 Score=36.72 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=24.6
Q ss_pred HHHHHHHcCCCcCEEEeCChHHHHHHHHhc
Q psy8296 200 LTEILRAVGIEPDGYLGHSLGENGVAYADG 229 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 229 (700)
+..++...++++-.++|||+|-+.|..++.
T Consensus 86 ~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~ 115 (288)
T TIGR01250 86 LEEVREKLGLDKFYLLGHSWGGMLAQEYAL 115 (288)
T ss_pred HHHHHHHcCCCcEEEEEeehHHHHHHHHHH
Confidence 345567789999999999999998887764
No 61
>PRK10349 carboxylesterase BioH; Provisional
Probab=47.48 E-value=20 Score=36.44 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=22.2
Q ss_pred HHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 202 EILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 202 ~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
+.+.+.++++-.++|||+|-+.|...|
T Consensus 66 ~~l~~~~~~~~~lvGhS~Gg~ia~~~a 92 (256)
T PRK10349 66 EAVLQQAPDKAIWLGWSLGGLVASQIA 92 (256)
T ss_pred HHHHhcCCCCeEEEEECHHHHHHHHHH
Confidence 445567888899999999999888776
No 62
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=47.44 E-value=56 Score=33.08 Aligned_cols=21 Identities=24% Similarity=0.067 Sum_probs=17.3
Q ss_pred CCCcCEEEeCChHHHHHHHHh
Q psy8296 208 GIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 208 Gi~P~~v~GHS~GE~aAa~~a 228 (700)
+-++-.++|||+|-+.|-.+.
T Consensus 83 ~~~~vilVgHSmGGlvar~~l 103 (225)
T PF07819_consen 83 PPRSVILVGHSMGGLVARSAL 103 (225)
T ss_pred CCCceEEEEEchhhHHHHHHH
Confidence 667789999999998887654
No 63
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=46.28 E-value=26 Score=36.07 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCC----cCEEEeCChHHHHHHHHhc
Q psy8296 198 IGLTEILRAVGIE----PDGYLGHSLGENGVAYADG 229 (700)
Q Consensus 198 ~Ala~ll~~~Gi~----P~~v~GHS~GE~aAa~~aG 229 (700)
++..+.|.+.|++ ++.+.|-|.|-++|++.+.
T Consensus 15 iGVl~~L~e~g~~l~~~~~~i~GtSaGAl~aa~~a~ 50 (246)
T cd07222 15 LGAAKALLRHGKKLLKRVKRFAGASAGSLVAAVLLT 50 (246)
T ss_pred HHHHHHHHHcCchhhccCCEEEEECHHHHHHHHHhc
Confidence 8899999999995 8999999999999988874
No 64
>PRK07581 hypothetical protein; Validated
Probab=46.19 E-value=20 Score=38.38 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=21.1
Q ss_pred HHHHcCCCc-CEEEeCChHHHHHHHHh
Q psy8296 203 ILRAVGIEP-DGYLGHSLGENGVAYAD 228 (700)
Q Consensus 203 ll~~~Gi~P-~~v~GHS~GE~aAa~~a 228 (700)
++...||++ ..|+|||+|-+.|...|
T Consensus 116 l~~~lgi~~~~~lvG~S~GG~va~~~a 142 (339)
T PRK07581 116 LTEKFGIERLALVVGWSMGAQQTYHWA 142 (339)
T ss_pred HHHHhCCCceEEEEEeCHHHHHHHHHH
Confidence 345699998 57899999999888665
No 65
>PLN02578 hydrolase
Probab=45.53 E-value=20 Score=38.78 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=24.5
Q ss_pred HHHHHHHcCCCcCEEEeCChHHHHHHHHhc
Q psy8296 200 LTEILRAVGIEPDGYLGHSLGENGVAYADG 229 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 229 (700)
+.+.++..+.+|..++|||+|-+.|..+|.
T Consensus 142 l~~~i~~~~~~~~~lvG~S~Gg~ia~~~A~ 171 (354)
T PLN02578 142 VADFVKEVVKEPAVLVGNSLGGFTALSTAV 171 (354)
T ss_pred HHHHHHHhccCCeEEEEECHHHHHHHHHHH
Confidence 446677778899999999999998887763
No 66
>PRK10673 acyl-CoA esterase; Provisional
Probab=45.39 E-value=21 Score=35.93 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=22.6
Q ss_pred HHHHHcCCCcCEEEeCChHHHHHHHHhc
Q psy8296 202 EILRAVGIEPDGYLGHSLGENGVAYADG 229 (700)
Q Consensus 202 ~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 229 (700)
..+...|+++-.++|||+|-..|+.++.
T Consensus 73 ~~l~~l~~~~~~lvGhS~Gg~va~~~a~ 100 (255)
T PRK10673 73 DTLDALQIEKATFIGHSMGGKAVMALTA 100 (255)
T ss_pred HHHHHcCCCceEEEEECHHHHHHHHHHH
Confidence 4455678888899999999998887764
No 67
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=43.43 E-value=22 Score=34.92 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=24.5
Q ss_pred HHHHHHHcCCCcCEEEeCChHHHHHHHHhcC
Q psy8296 200 LTEILRAVGIEPDGYLGHSLGENGVAYADGC 230 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ 230 (700)
+.+.+..++.++-.++|||+|-+.|..+|..
T Consensus 69 ~~~~i~~~~~~~v~liG~S~Gg~~a~~~a~~ 99 (251)
T TIGR02427 69 VLALLDHLGIERAVFCGLSLGGLIAQGLAAR 99 (251)
T ss_pred HHHHHHHhCCCceEEEEeCchHHHHHHHHHH
Confidence 4456667788888999999999888877654
No 68
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=41.79 E-value=28 Score=38.15 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCCcC-EEEeCChHHHHHHHHhc
Q psy8296 199 GLTEILRAVGIEPD-GYLGHSLGENGVAYADG 229 (700)
Q Consensus 199 Ala~ll~~~Gi~P~-~v~GHS~GE~aAa~~aG 229 (700)
.+.+++..+|+++. .++|||+|-+.|...|.
T Consensus 135 ~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~ 166 (379)
T PRK00175 135 AQARLLDALGITRLAAVVGGSMGGMQALEWAI 166 (379)
T ss_pred HHHHHHHHhCCCCceEEEEECHHHHHHHHHHH
Confidence 35677788999985 89999999988876653
No 69
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=41.22 E-value=29 Score=33.85 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
-.+..+++..|++.-.++|||+|-..++..+
T Consensus 32 ~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a 62 (230)
T PF00561_consen 32 ADLEALREALGIKKINLVGHSMGGMLALEYA 62 (230)
T ss_dssp HHHHHHHHHHTTSSEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEECCChHHHHHHH
Confidence 3445667789999999999999987776554
No 70
>PRK11460 putative hydrolase; Provisional
Probab=40.97 E-value=3.1e+02 Score=27.56 Aligned_cols=43 Identities=12% Similarity=-0.096 Sum_probs=26.6
Q ss_pred hHHHHHHHHhcCCeeEE--EeccccCCCChhhHhhhHHHHHHHHh
Q psy8296 294 DVEPYLEILKAKNIFYR--VVNSSFIAYHSRQVKPLAPKVLELFQ 336 (700)
Q Consensus 294 ~l~~l~~~l~~~~i~~~--~L~v~~~afHS~~m~~~~~~~~~~l~ 336 (700)
..+++.+.|++.|..+. ..+..+|.|.-..++.+.+-+.+.+.
T Consensus 166 ~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l~ 210 (232)
T PRK11460 166 HAVAAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTVP 210 (232)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHcc
Confidence 45677788887775433 33433577776666666666665553
No 71
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=40.94 E-value=29 Score=38.32 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCCcC-EEEeCChHHHHHHHHh
Q psy8296 198 IGLTEILRAVGIEPD-GYLGHSLGENGVAYAD 228 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~-~v~GHS~GE~aAa~~a 228 (700)
-++.+++..+||++- +|+|||+|-..|...|
T Consensus 148 ~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a 179 (389)
T PRK06765 148 RVQKELIKSLGIARLHAVMGPSMGGMQAQEWA 179 (389)
T ss_pred HHHHHHHHHcCCCCceEEEEECHHHHHHHHHH
Confidence 445677888999876 5999999988776554
No 72
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=40.38 E-value=27 Score=33.96 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 198 IGLTEILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 198 ~Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
--+..++...|+.+-.++|||+|...+...+
T Consensus 76 ~~~~~~~~~~~~~~~~l~G~S~Gg~~~~~~~ 106 (282)
T COG0596 76 DDLAALLDALGLEKVVLVGHSMGGAVALALA 106 (282)
T ss_pred HHHHHHHHHhCCCceEEEEecccHHHHHHHH
Confidence 3455677789999999999999966666554
No 73
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=40.22 E-value=1.4e+02 Score=29.02 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=17.8
Q ss_pred CCCCEEEEEcCCCCChhhhHHHHhh
Q psy8296 111 IKRPVWFVYAGMGSQWPGMARELMW 135 (700)
Q Consensus 111 ~~~~v~fvF~GQGsq~~gmg~~L~~ 135 (700)
....|+++-||-|+.-.++....+.
T Consensus 17 ~A~~Vav~VPG~~t~~~~~~~~~~~ 41 (177)
T PF06259_consen 17 TADHVAVLVPGTGTTLDSFLGGMDD 41 (177)
T ss_pred CcCeeEEEcCCCCCCcccccchhHH
Confidence 3457899999999887666555443
No 74
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=38.66 E-value=32 Score=38.12 Aligned_cols=27 Identities=30% Similarity=0.203 Sum_probs=22.7
Q ss_pred HHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 202 EILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 202 ~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
+.+...|+++-.++|||+|-+.|+.++
T Consensus 168 ~~~~~l~~~~~~lvGhS~GG~la~~~a 194 (402)
T PLN02894 168 EWRKAKNLSNFILLGHSFGGYVAAKYA 194 (402)
T ss_pred HHHHHcCCCCeEEEEECHHHHHHHHHH
Confidence 455667999999999999999988765
No 75
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=38.46 E-value=30 Score=32.20 Aligned_cols=55 Identities=13% Similarity=-0.017 Sum_probs=36.3
Q ss_pred cccccccccceecCeeccchhhHHHHHHHHHHHhcccC---CCce--eEEEecCccceeEE
Q psy8296 499 NKEYRALFSHQVNGVVIPPLSLFLVDVYEKLCAQHHKN---GLDE--TFVCEEYKMKSLVE 554 (700)
Q Consensus 499 ~~~~p~L~dH~V~g~~v~Paa~ylemA~eA~~~~~~~~---~~~~--~~~l~dv~~~~~l~ 554 (700)
..+.+|+.||- .|.+++||...+|++.+++..+.... .... ...+++++|.+|+.
T Consensus 44 ~~d~~~~~ghf-p~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~ 103 (147)
T PRK00006 44 TINEPFFQGHF-PGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVV 103 (147)
T ss_pred cCCCccccCCC-cCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccC
Confidence 34467999996 46799999999997666654332111 1112 23468899999875
No 76
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=37.79 E-value=86 Score=35.26 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=23.7
Q ss_pred HHHHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 200 LTEILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
+.++++..|.+|-.++|||+|-+.+.+.+
T Consensus 152 Ie~~~~~~g~~kV~LVGHSMGGlva~~fl 180 (440)
T PLN02733 152 LETVYKASGGKKVNIISHSMGGLLVKCFM 180 (440)
T ss_pred HHHHHHHcCCCCEEEEEECHhHHHHHHHH
Confidence 34555678999999999999999888765
No 77
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=37.23 E-value=33 Score=31.58 Aligned_cols=61 Identities=10% Similarity=-0.116 Sum_probs=39.6
Q ss_pred EEEecccccccccccceecCeeccchhhHHHHHHHHHHHhcccC------CCcee--EEEecCccceeEEE
Q psy8296 493 TEVDLLNKEYRALFSHQVNGVVIPPLSLFLVDVYEKLCAQHHKN------GLDET--FVCEEYKMKSLVEV 555 (700)
Q Consensus 493 ~~~~l~~~~~p~L~dH~V~g~~v~Paa~ylemA~eA~~~~~~~~------~~~~~--~~l~dv~~~~~l~l 555 (700)
.+.+++. +.+|+.||= .|.+++||...+|++.+++.-+.+.. ..... ..+++++|.+++..
T Consensus 32 ~~~~v~~-~~~~f~gHF-p~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~p 100 (140)
T TIGR01750 32 AIKNVTI-NEPFFQGHF-PEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVP 100 (140)
T ss_pred EEEEcCC-CCCeecCCC-cCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccCC
Confidence 3445543 468999995 67899999999999888765333211 11121 23578888886643
No 78
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=36.98 E-value=28 Score=33.75 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=16.1
Q ss_pred HHHHHHHcCCCcCEEEeCCh
Q psy8296 200 LTEILRAVGIEPDGYLGHSL 219 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~ 219 (700)
.+..|++.|..||.|+|||-
T Consensus 56 a~~~L~~~Gf~PDvI~~H~G 75 (171)
T PF12000_consen 56 AARQLRAQGFVPDVIIAHPG 75 (171)
T ss_pred HHHHHHHcCCCCCEEEEcCC
Confidence 34566777999999999983
No 79
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=36.92 E-value=35 Score=33.90 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=24.3
Q ss_pred HHHHHHHcCCCcCEEEeCChHHHHHHHHhc
Q psy8296 200 LTEILRAVGIEPDGYLGHSLGENGVAYADG 229 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 229 (700)
+.+.+...++++-.++|||+|-..|..++.
T Consensus 70 ~~~~i~~~~~~~~~l~G~S~Gg~~a~~~a~ 99 (257)
T TIGR03611 70 VLQLLDALNIERFHFVGHALGGLIGLQLAL 99 (257)
T ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHH
Confidence 445666778888999999999998887764
No 80
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=36.33 E-value=48 Score=31.32 Aligned_cols=31 Identities=23% Similarity=0.077 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCC--CcCEEEeCChHHHHHHHHh
Q psy8296 198 IGLTEILRAVGI--EPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 198 ~Ala~ll~~~Gi--~P~~v~GHS~GE~aAa~~a 228 (700)
++..+.|.+.|+ .++.+.|.|.|-+.|+..+
T Consensus 14 ~gvl~~l~~~~~~~~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 14 AGVLSALAERGLLDCVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred HHHHHHHHHhCCccCCCEEEEEcHHHHHHHHHh
Confidence 888899999999 9999999999999999888
No 81
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=36.03 E-value=37 Score=36.57 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=24.1
Q ss_pred HHHHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 200 LTEILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
+.+++...|+.+-.++|||+|-+.|..+|
T Consensus 187 ~~~~~~~~~~~~~~lvG~S~Gg~~a~~~a 215 (371)
T PRK14875 187 VLAFLDALGIERAHLVGHSMGGAVALRLA 215 (371)
T ss_pred HHHHHHhcCCccEEEEeechHHHHHHHHH
Confidence 45667788999999999999999888665
No 82
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=35.37 E-value=37 Score=35.30 Aligned_cols=29 Identities=31% Similarity=0.283 Sum_probs=22.7
Q ss_pred HHHHHHHcC-CCcCEEEeCChHHHHHHHHh
Q psy8296 200 LTEILRAVG-IEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 200 la~ll~~~G-i~P~~v~GHS~GE~aAa~~a 228 (700)
+.+.+.+.+ .++-.++|||+|-+.+..++
T Consensus 76 l~~~i~~l~~~~~v~lvGhS~GG~v~~~~a 105 (273)
T PLN02211 76 LIDFLSSLPENEKVILVGHSAGGLSVTQAI 105 (273)
T ss_pred HHHHHHhcCCCCCEEEEEECchHHHHHHHH
Confidence 455666664 68889999999999887775
No 83
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=35.07 E-value=77 Score=33.31 Aligned_cols=47 Identities=17% Similarity=-0.072 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCC----cCEEEeCChHHHHHHHHhcCCCHHHHHHHHHHHh
Q psy8296 198 IGLTEILRAVGIE----PDGYLGHSLGENGVAYADGCFDIREACLGGYARG 244 (700)
Q Consensus 198 ~Ala~ll~~~Gi~----P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~Rg 244 (700)
.++.+.|++.+.+ +|.++|-|.|-+.|+..+--.+.++.+++....+
T Consensus 18 ~~vL~~Le~~~~~~~~~fD~i~GTSaGaiia~~la~g~~~~e~~~~~~~~~ 68 (288)
T cd07213 18 LVLLKRLAEEFPSFLDQIDLFAGTSAGSLIALGLALGYSPRQVLKLYEEVG 68 (288)
T ss_pred HHHHHHHHHhCcccccceeEEEEeCHHHHHHHHHHcCcCHHHHHHHHHHhC
Confidence 4555566666654 8999999999998888776678888887766544
No 84
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=34.39 E-value=1.1e+02 Score=34.15 Aligned_cols=30 Identities=17% Similarity=0.157 Sum_probs=21.2
Q ss_pred HHHHHHHHc---CCCcCEEEeCChHHHHHHHHh
Q psy8296 199 GLTEILRAV---GIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 199 Ala~ll~~~---Gi~P~~v~GHS~GE~aAa~~a 228 (700)
++.+.+... +..+-+++|||+|-+.|+.+|
T Consensus 251 avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A 283 (414)
T PRK05077 251 AVLNALPNVPWVDHTRVAAFGFRFGANVAVRLA 283 (414)
T ss_pred HHHHHHHhCcccCcccEEEEEEChHHHHHHHHH
Confidence 344555544 445668999999999988765
No 85
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=33.98 E-value=44 Score=32.63 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=19.2
Q ss_pred HHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 204 LRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 204 l~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
+....-++-.++|||+|-+.|+.++
T Consensus 59 ~~~~~~~~~~lvG~S~Gg~~a~~~a 83 (245)
T TIGR01738 59 IAAQAPDPAIWLGWSLGGLVALHIA 83 (245)
T ss_pred HHHhCCCCeEEEEEcHHHHHHHHHH
Confidence 3344447889999999999887766
No 86
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=33.52 E-value=49 Score=31.24 Aligned_cols=58 Identities=16% Similarity=-0.075 Sum_probs=40.5
Q ss_pred EecccccccccccceecCeeccchhhHHHHHHHHHHHhcccCCCc---e--eEEEecCccceeEE
Q psy8296 495 VDLLNKEYRALFSHQVNGVVIPPLSLFLVDVYEKLCAQHHKNGLD---E--TFVCEEYKMKSLVE 554 (700)
Q Consensus 495 ~~l~~~~~p~L~dH~V~g~~v~Paa~ylemA~eA~~~~~~~~~~~---~--~~~l~dv~~~~~l~ 554 (700)
.+++ ...|+..||- -|.+++||..-+|-.++++.-+....... . ...+.+++|.+++.
T Consensus 39 k~Vt-~nepfF~gHF-P~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~ 101 (147)
T COG0764 39 KNVT-INEPFFTGHF-PGDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVL 101 (147)
T ss_pred EccC-CCCCeeCCcC-CCCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecceeecCccC
Confidence 3443 4478999996 78999999999997777765544332221 1 24688999999765
No 87
>PRK06489 hypothetical protein; Provisional
Probab=33.43 E-value=41 Score=36.46 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=20.6
Q ss_pred HHHcCCCcCE-EEeCChHHHHHHHHh
Q psy8296 204 LRAVGIEPDG-YLGHSLGENGVAYAD 228 (700)
Q Consensus 204 l~~~Gi~P~~-v~GHS~GE~aAa~~a 228 (700)
...+|+++.. ++|||+|-+.|...+
T Consensus 147 ~~~lgi~~~~~lvG~SmGG~vAl~~A 172 (360)
T PRK06489 147 TEGLGVKHLRLILGTSMGGMHAWMWG 172 (360)
T ss_pred HHhcCCCceeEEEEECHHHHHHHHHH
Confidence 3568998764 899999999988776
No 88
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=33.27 E-value=89 Score=33.92 Aligned_cols=38 Identities=18% Similarity=-0.103 Sum_probs=32.1
Q ss_pred CCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHHHHHhH
Q psy8296 208 GIEPDGYLGHSLGENGVAYADGCFDIREACLGGYARGY 245 (700)
Q Consensus 208 Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~Rg~ 245 (700)
+...|.+.|-|.|-+.|+..+--+|.+|...+....+.
T Consensus 39 ~d~FDlIaGTStGgIIAa~la~g~s~~ei~~~y~~~~~ 76 (344)
T cd07217 39 GDYFDFVGGTSTGSIIAACIALGMSVTDLLSFYTLNGV 76 (344)
T ss_pred cccccEEEEecHHHHHHHHHHcCCCHHHHHHHHHhhhh
Confidence 44569999999999999888878999999988876654
No 89
>PRK03204 haloalkane dehalogenase; Provisional
Probab=32.67 E-value=42 Score=35.05 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 199 GLTEILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 199 Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
.+..++..+|+++-.++|||+|-..|...+
T Consensus 90 ~~~~~~~~~~~~~~~lvG~S~Gg~va~~~a 119 (286)
T PRK03204 90 VIGEFVDHLGLDRYLSMGQDWGGPISMAVA 119 (286)
T ss_pred HHHHHHHHhCCCCEEEEEECccHHHHHHHH
Confidence 345666778999999999999987765443
No 90
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=32.65 E-value=1.9e+02 Score=29.96 Aligned_cols=28 Identities=7% Similarity=-0.020 Sum_probs=19.7
Q ss_pred HHHHHHc--CCCcCEEEeCChHHHHHHHHh
Q psy8296 201 TEILRAV--GIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 201 a~ll~~~--Gi~P~~v~GHS~GE~aAa~~a 228 (700)
.+.++.. |++.-.++|||+|-+.|+..+
T Consensus 89 ~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a 118 (274)
T TIGR03100 89 IDAFREAAPHLRRIVAWGLCDAASAALLYA 118 (274)
T ss_pred HHHHHhhCCCCCcEEEEEECHHHHHHHHHh
Confidence 3444433 777778999999988877553
No 91
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=31.63 E-value=1e+02 Score=32.62 Aligned_cols=48 Identities=15% Similarity=-0.016 Sum_probs=34.8
Q ss_pred HHHHHHHHHc-CCC----cCEEEeCChHHHHHHHHh-cCCCHHHHHHHHHHHhH
Q psy8296 198 IGLTEILRAV-GIE----PDGYLGHSLGENGVAYAD-GCFDIREACLGGYARGY 245 (700)
Q Consensus 198 ~Ala~ll~~~-Gi~----P~~v~GHS~GE~aAa~~a-G~lsl~dai~lv~~Rg~ 245 (700)
+.+-+.|++. |.+ .|.+.|-|.|-+.|+..+ +-++.+|...+....+.
T Consensus 24 ~~vL~~Le~~~~~~i~~~fDli~GTStGgiiA~~la~~~~~~~e~~~~y~~~~~ 77 (308)
T cd07211 24 LEILRKIEKLTGKPIHELFDYICGVSTGAILAFLLGLKKMSLDECEELYRKLGK 77 (308)
T ss_pred HHHHHHHHHHhCCCchhhcCEEEecChhHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 4444555544 443 499999999999888876 56999998888765543
No 92
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=31.41 E-value=49 Score=34.85 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=23.8
Q ss_pred HHHHHHHcCCCcCEEEeCChHHHHHHHHhc
Q psy8296 200 LTEILRAVGIEPDGYLGHSLGENGVAYADG 229 (700)
Q Consensus 200 la~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 229 (700)
+..++..+|+++-.++|||+|-+.++..+.
T Consensus 85 l~~l~~~l~~~~~~lvG~S~GG~ia~~~a~ 114 (306)
T TIGR01249 85 IEKLREKLGIKNWLVFGGSWGSTLALAYAQ 114 (306)
T ss_pred HHHHHHHcCCCCEEEEEECHHHHHHHHHHH
Confidence 345566789998899999999988876654
No 93
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=30.22 E-value=62 Score=29.36 Aligned_cols=30 Identities=27% Similarity=0.203 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 199 GLTEILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 199 Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
.+.+++...+-.-=.+.|||+|-..|..++
T Consensus 53 ~l~~~~~~~~~~~i~itGHSLGGalA~l~a 82 (140)
T PF01764_consen 53 ALKELVEKYPDYSIVITGHSLGGALASLAA 82 (140)
T ss_dssp HHHHHHHHSTTSEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHhcccCccchhhccchHHHHHHHHH
Confidence 344444455534456789999987776654
No 94
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=26.65 E-value=43 Score=33.89 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.1
Q ss_pred HHcCCCcC--EEEeCChHHHHHHHHh
Q psy8296 205 RAVGIEPD--GYLGHSLGENGVAYAD 228 (700)
Q Consensus 205 ~~~Gi~P~--~v~GHS~GE~aAa~~a 228 (700)
+.+.+.++ +++|||+|-+.|++++
T Consensus 108 ~~~~~~~~~~~i~G~S~GG~~Al~~~ 133 (251)
T PF00756_consen 108 ANYRTDPDRRAIAGHSMGGYGALYLA 133 (251)
T ss_dssp HHSSEEECCEEEEEETHHHHHHHHHH
T ss_pred HhcccccceeEEeccCCCcHHHHHHH
Confidence 46788888 9999999999999875
No 95
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=26.57 E-value=58 Score=37.09 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=23.3
Q ss_pred HHHHHcCCCcCEEEeCChHHHHHHHHhc
Q psy8296 202 EILRAVGIEPDGYLGHSLGENGVAYADG 229 (700)
Q Consensus 202 ~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 229 (700)
.++...|+++-.++|||+|-+.|...+.
T Consensus 266 ~ll~~lg~~k~~LVGhSmGG~iAl~~A~ 293 (481)
T PLN03087 266 SVLERYKVKSFHIVAHSLGCILALALAV 293 (481)
T ss_pred HHHHHcCCCCEEEEEECHHHHHHHHHHH
Confidence 3567789999999999999998876653
No 96
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=26.31 E-value=93 Score=37.29 Aligned_cols=32 Identities=22% Similarity=0.113 Sum_probs=26.3
Q ss_pred HHHHHHHH---HcCCCcCEEEeCChHHHHHHHHhc
Q psy8296 198 IGLTEILR---AVGIEPDGYLGHSLGENGVAYADG 229 (700)
Q Consensus 198 ~Ala~ll~---~~Gi~P~~v~GHS~GE~aAa~~aG 229 (700)
..|.+.|. +.++.+|.+.|.|.|-+.|+..|.
T Consensus 51 ~~l~~~l~~~~~~~~~~d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 51 GALLELLGAHLRLRVRVDVISGTSAGGINGVLLAY 85 (739)
T ss_pred HHHHHHhhhhhccCCCCceEEeeCHHHHHHHHHHc
Confidence 55666665 678999999999999998877775
No 97
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=26.30 E-value=51 Score=31.18 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=24.6
Q ss_pred HHHHHHH-HHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 198 IGLTEIL-RAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 198 ~Ala~ll-~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
.+..+.| ...+.++|.+.|-|.|-+.|++.+
T Consensus 14 ~G~l~~L~~~~~~~~d~i~GtS~Gal~a~~~~ 45 (204)
T PF01734_consen 14 AGVLKALGQGLGERFDVISGTSAGALNAALLA 45 (204)
T ss_dssp HHHHHHHCCTGCCT-SEEEEECCHHHHHHHHH
T ss_pred HHHHHHHhhhhCCCccEEEEcChhhhhHHHHH
Confidence 6666777 778899999999999999985543
No 98
>PRK10749 lysophospholipase L2; Provisional
Probab=26.13 E-value=64 Score=34.44 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=18.6
Q ss_pred HcCCCcCEEEeCChHHHHHHHHh
Q psy8296 206 AVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 206 ~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
..+..|-.++|||+|-..|+..+
T Consensus 127 ~~~~~~~~l~GhSmGG~ia~~~a 149 (330)
T PRK10749 127 PGPYRKRYALAHSMGGAILTLFL 149 (330)
T ss_pred cCCCCCeEEEEEcHHHHHHHHHH
Confidence 44788999999999998886543
No 99
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=25.48 E-value=49 Score=31.98 Aligned_cols=19 Identities=32% Similarity=0.181 Sum_probs=15.5
Q ss_pred CcCEEEeCChHHHHHHHHh
Q psy8296 210 EPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 210 ~P~~v~GHS~GE~aAa~~a 228 (700)
+|..+||||+|-++++..+
T Consensus 55 ~~~ilVaHSLGc~~~l~~l 73 (171)
T PF06821_consen 55 EPTILVAHSLGCLTALRWL 73 (171)
T ss_dssp TTEEEEEETHHHHHHHHHH
T ss_pred CCeEEEEeCHHHHHHHHHH
Confidence 4679999999999887554
No 100
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=25.19 E-value=64 Score=35.05 Aligned_cols=35 Identities=29% Similarity=0.198 Sum_probs=27.6
Q ss_pred CCCcCEEEeCChHHHHHHHHhcCCCHHHHHHHHHH
Q psy8296 208 GIEPDGYLGHSLGENGVAYADGCFDIREACLGGYA 242 (700)
Q Consensus 208 Gi~P~~v~GHS~GE~aAa~~aG~lsl~dai~lv~~ 242 (700)
-..+-.++|||+|-++++..+|+=..-+.+.-.+.
T Consensus 157 d~~~Vgv~GhS~GG~T~m~laGA~~~~~~~~~~C~ 191 (365)
T COG4188 157 DPQRVGVLGHSFGGYTAMELAGAELDAEALLQHCE 191 (365)
T ss_pred CccceEEEecccccHHHHHhccccccHHHHHHHhh
Confidence 35667899999999999999998776666655544
No 101
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=24.89 E-value=80 Score=34.22 Aligned_cols=30 Identities=33% Similarity=0.482 Sum_probs=24.0
Q ss_pred HHHHHHHHHc--CCCcCEEEeCChHHHHHHHH
Q psy8296 198 IGLTEILRAV--GIEPDGYLGHSLGENGVAYA 227 (700)
Q Consensus 198 ~Ala~ll~~~--Gi~P~~v~GHS~GE~aAa~~ 227 (700)
..||+.|.+. |-+|-.++|||+|--+.-+|
T Consensus 206 ~~LA~~L~~~~~G~RpVtLvG~SLGarvI~~c 237 (345)
T PF05277_consen 206 KVLADALLSRNQGERPVTLVGHSLGARVIYYC 237 (345)
T ss_pred HHHHHHHHHhcCCCCceEEEeecccHHHHHHH
Confidence 5677888654 99999999999997666554
No 102
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=24.82 E-value=69 Score=35.98 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=17.7
Q ss_pred CCCcCEEEeCChHHHHHHHHh
Q psy8296 208 GIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 208 Gi~P~~v~GHS~GE~aAa~~a 228 (700)
++..-.++|||+|--.|..++
T Consensus 117 ~l~~VhLIGHSLGAhIAg~ag 137 (442)
T TIGR03230 117 PWDNVHLLGYSLGAHVAGIAG 137 (442)
T ss_pred CCCcEEEEEECHHHHHHHHHH
Confidence 467788999999999888875
No 103
>PHA02857 monoglyceride lipase; Provisional
Probab=24.41 E-value=77 Score=32.43 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=19.1
Q ss_pred HcCCCcCEEEeCChHHHHHHHHh
Q psy8296 206 AVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 206 ~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
+++..|-.++|||+|-..|...+
T Consensus 93 ~~~~~~~~lvG~S~GG~ia~~~a 115 (276)
T PHA02857 93 TYPGVPVFLLGHSMGATISILAA 115 (276)
T ss_pred hCCCCCEEEEEcCchHHHHHHHH
Confidence 46667889999999999887765
No 104
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=24.04 E-value=85 Score=30.87 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=20.4
Q ss_pred HHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 202 EILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 202 ~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
+++...+-....++|+|+|-+-|.+.|
T Consensus 51 ~~i~~~~~~~~~liGSSlGG~~A~~La 77 (187)
T PF05728_consen 51 QLIEELKPENVVLIGSSLGGFYATYLA 77 (187)
T ss_pred HHHHhCCCCCeEEEEEChHHHHHHHHH
Confidence 444555444469999999999999875
No 105
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=24.03 E-value=70 Score=33.41 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=17.2
Q ss_pred CCcCEEEeCChHHHHHHHHhc
Q psy8296 209 IEPDGYLGHSLGENGVAYADG 229 (700)
Q Consensus 209 i~P~~v~GHS~GE~aAa~~aG 229 (700)
.+.-.++|||+|-..|..++.
T Consensus 111 ~~~i~lIGhSlGa~vAg~~a~ 131 (275)
T cd00707 111 LENVHLIGHSLGAHVAGFAGK 131 (275)
T ss_pred hHHEEEEEecHHHHHHHHHHH
Confidence 355789999999999988864
No 106
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=23.70 E-value=2.1e+02 Score=31.01 Aligned_cols=30 Identities=33% Similarity=0.354 Sum_probs=23.5
Q ss_pred HHHHHHHHH--cCCCcCEE--EeCChHHHHHHHH
Q psy8296 198 IGLTEILRA--VGIEPDGY--LGHSLGENGVAYA 227 (700)
Q Consensus 198 ~Ala~ll~~--~Gi~P~~v--~GHS~GE~aAa~~ 227 (700)
-|+++.|++ .|++|.-+ -|||+|-..+|.+
T Consensus 199 ~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~A 232 (365)
T PF05677_consen 199 QACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEA 232 (365)
T ss_pred HHHHHHHHhcccCCChheEEEeeccccHHHHHHH
Confidence 688889985 79998754 5999998877643
No 107
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=23.30 E-value=86 Score=31.44 Aligned_cols=26 Identities=23% Similarity=0.064 Sum_probs=17.6
Q ss_pred HHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 203 ILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 203 ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
++....-.+=.+.|||+|--.|..++
T Consensus 121 ~~~~~p~~~i~vtGHSLGGaiA~l~a 146 (229)
T cd00519 121 ALKQYPDYKIIVTGHSLGGALASLLA 146 (229)
T ss_pred HHhhCCCceEEEEccCHHHHHHHHHH
Confidence 33333334457999999988777665
No 108
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=22.58 E-value=1.7e+02 Score=32.36 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=19.6
Q ss_pred HHHHH-HcCCCcCEEEeCChHH--HHHHHH
Q psy8296 201 TEILR-AVGIEPDGYLGHSLGE--NGVAYA 227 (700)
Q Consensus 201 a~ll~-~~Gi~P~~v~GHS~GE--~aAa~~ 227 (700)
.+... .||.++-.++|+|+|. +.++|-
T Consensus 316 i~~y~~~w~~~~~~liGySfGADvlP~~~n 345 (456)
T COG3946 316 IRFYARRWGAKRVLLIGYSFGADVLPFAYN 345 (456)
T ss_pred HHHHHHhhCcceEEEEeecccchhhHHHHH
Confidence 34444 5999999999999995 444443
No 109
>PRK10985 putative hydrolase; Provisional
Probab=21.77 E-value=85 Score=33.44 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=18.0
Q ss_pred HHcCCCcCEEEeCChHHHHHHHH
Q psy8296 205 RAVGIEPDGYLGHSLGENGVAYA 227 (700)
Q Consensus 205 ~~~Gi~P~~v~GHS~GE~aAa~~ 227 (700)
+..+..|-.++|||+|-..++..
T Consensus 126 ~~~~~~~~~~vG~S~GG~i~~~~ 148 (324)
T PRK10985 126 REFGHVPTAAVGYSLGGNMLACL 148 (324)
T ss_pred HhCCCCCEEEEEecchHHHHHHH
Confidence 45788899999999999755443
No 110
>KOG1454|consensus
Probab=21.67 E-value=86 Score=33.73 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCcCEEEeCChHHHHHHHHh
Q psy8296 199 GLTEILRAVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 199 Ala~ll~~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
.+-+.+...+.+|..++|||+|-+.|..+|
T Consensus 117 ~i~~~~~~~~~~~~~lvghS~Gg~va~~~A 146 (326)
T KOG1454|consen 117 LIRRFVKEVFVEPVSLVGHSLGGIVALKAA 146 (326)
T ss_pred HHHHHHHhhcCcceEEEEeCcHHHHHHHHH
Confidence 344666778889999999999999887665
No 111
>KOG4409|consensus
Probab=20.92 E-value=87 Score=33.84 Aligned_cols=29 Identities=31% Similarity=0.296 Sum_probs=22.3
Q ss_pred HHHHHH-HcCCCcCEEEeCChHHHHHHHHh
Q psy8296 200 LTEILR-AVGIEPDGYLGHSLGENGVAYAD 228 (700)
Q Consensus 200 la~ll~-~~Gi~P~~v~GHS~GE~aAa~~a 228 (700)
-.+.|+ ..||.-=.|+|||+|-|-|+.-|
T Consensus 149 siE~WR~~~~L~KmilvGHSfGGYLaa~YA 178 (365)
T KOG4409|consen 149 SIEQWRKKMGLEKMILVGHSFGGYLAAKYA 178 (365)
T ss_pred HHHHHHHHcCCcceeEeeccchHHHHHHHH
Confidence 345676 57999889999999998766443
No 112
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=20.05 E-value=2.6e+02 Score=28.37 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=20.8
Q ss_pred HHHHHHHHH---c-CCCcCEEEeCChHHHHHHH
Q psy8296 198 IGLTEILRA---V-GIEPDGYLGHSLGENGVAY 226 (700)
Q Consensus 198 ~Ala~ll~~---~-Gi~P~~v~GHS~GE~aAa~ 226 (700)
-+|+++|+. . |.+--.+++||+|-.....
T Consensus 77 ~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~ 109 (233)
T PF05990_consen 77 PALARFLRDLARAPGIKRIHILAHSMGNRVLLE 109 (233)
T ss_pred HHHHHHHHHHHhccCCceEEEEEeCchHHHHHH
Confidence 455566554 3 6777889999999877654
Done!