RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8296
(700 letters)
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain.
Length = 319
Score = 196 bits (501), Expect = 3e-57
Identities = 89/346 (25%), Positives = 147/346 (42%), Gaps = 41/346 (11%)
Query: 116 WFVYAGMGSQWPGMARELMWFAP-FRQAIFECDRVYRP-LGLDIVKIITSDDPTTFDDIL 173
FV++G GSQW GM +L+ +P F AI CD ++P G ++ ++ ++ + +
Sbjct: 1 VFVFSGQGSQWAGMGMDLLKTSPVFAAAIARCDEAFKPQYGFSVLDVLRNNPEGLLERVD 60
Query: 174 NSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDI 233
A+ +I L +LR+ G+ P +GHSLGE A G +
Sbjct: 61 VVQPAL--------------FAMQIALAALLRSYGVTPAAVVGHSLGEIAAAVVAGALSL 106
Query: 234 REACLGGYARGYASKVYK-LEKPGLMVSVGLNYKDLTDL---PPSVDIACHNSDDNTTIS 289
EA L R S++ + L PG M +VGL +++ L P V +A NS + ++
Sbjct: 107 EEAALVVALR---SRLMRQLAGPGGMAAVGLPAEEVEQLARWPDRVVVAIVNSPRSVVVA 163
Query: 290 GAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQN--PKKRSA 347
G QE ++ ++E ++A+ + RV+ A HS QV+ + L R
Sbjct: 164 GPQEALDEFVERVEARGVRARVIAVD-YASHSPQVEAIGD---ALALALADIAPRTPRVP 219
Query: 348 KWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYI--PENAIVIEVAPHGLMQ 405
+ ++S + AEY N + VRF EA + +EV+PH ++
Sbjct: 220 FYSTTSGDPS-----DQRELDAEYWYRNLRNPVRFAEAVLAAAEQGYLVFVEVSPHPVLL 274
Query: 406 ALLRRTTKDG----CVNIPLCRRQTESPANFLLAALGQLHMNGLRP 447
A + T K + R F L AL H+ G+
Sbjct: 275 AAVEETLKSADGKDATLVGTLIRDQGDLVTF-LYALAVAHLTGVAV 319
>gnl|CDD|214838 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase
(PKS) enzymes.
Length = 298
Score = 193 bits (492), Expect = 4e-56
Identities = 87/320 (27%), Positives = 143/320 (44%), Gaps = 36/320 (11%)
Query: 118 VYAGMGSQWPGMARELM-WFAPFRQAIFECDRVYRP-LGLDIVKIITSDDPTTFDDILNS 175
V+ G GSQW GM REL FR+A+ ECD +P LG ++ ++ +D +L++
Sbjct: 1 VFTGQGSQWAGMGRELYETEPVFREALDECDAALQPLLGWSLLDVLLGEDGA--ASLLDT 58
Query: 176 FVA--IVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDI 233
VA + Q + L +LR+ G+ PD +GHS GE AY G +
Sbjct: 59 EVAQPALFAVQ-------------VALARLLRSWGVRPDAVVGHSSGEIAAAYVAGVLSL 105
Query: 234 REACLGGYARGYASKVYKLEKPGLMVSVGLNYKD----LTDLPPSVDIACHNSDDNTTIS 289
+A ARG + L G M++VGL+ ++ L +P V +A NS + +S
Sbjct: 106 EDAARLVAARGRLMQ--ALPGGGAMLAVGLSEEEVEPLLAGVPDRVSVAAVNSPSSVVLS 163
Query: 290 GAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKW 349
G ++ V+ L+A+ IF R + A+HS ++P+ + P+ +
Sbjct: 164 GDEDAVDELAARLEAEGIFARRLKVDH-AFHSPHMEPILDEFRAALAGL--TPRPPRIPF 220
Query: 350 ISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEA---CAYIPENAIVIEVAPHGLMQA 406
+S+ A+ A+Y V N VRF +A + +EV PH ++
Sbjct: 221 VSTV--TGTLIDG-AELDDADYWVRNLREPVRFADAVRALLAEGGVTVFLEVGPHPVLTG 277
Query: 407 LLRRTTKD--GCVNIPLCRR 424
+++T V +P RR
Sbjct: 278 PIKQTLAAAGSAVVLPSLRR 297
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 124 bits (312), Expect = 4e-29
Identities = 94/381 (24%), Positives = 151/381 (39%), Gaps = 40/381 (10%)
Query: 109 QPIKRPVWFVYAGMGSQWPGMARELMWFAP-FRQAIFECDRVYRPL-GLDIVKIITSDDP 166
+ FV+ G GSQW GM REL P F A + + L G + ++I + D
Sbjct: 521 DDSGKKTVFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDY 580
Query: 167 TTFDDILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAY 226
+ I + A+ + L + R+ G+ P +GHSLGE A
Sbjct: 581 PFLESIDFAQPALFAV--------------SVALAALWRSWGVIPGAVIGHSLGELAAAV 626
Query: 227 ADGCFDIREACLGGYARGYASKVYKLEKPGLMVSVGLNYKD-----LTDLPPSVDIACHN 281
A G + +A RG + +L G M++V L+ L P V +A N
Sbjct: 627 AAGVLSLEDALRVVATRG--RLMQQLAGEGAMLAVELSLLAEVQELLALGRPQVPLAAVN 684
Query: 282 SDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPK-VLELFQQAVQ 340
S I+G E + + L+A+ + R + S A+HS + P+ + L A +
Sbjct: 685 SPQQVVIAGDPEAIAALIARLQAQGVRARRLAVSH-AFHSPLMDPILDEFAAALADLAPR 743
Query: 341 NPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPENA--IVIEV 398
P+ IS+ + A+Y V + VRF +A A + IEV
Sbjct: 744 PPQ---IPLISNVTGDL----AGEPGGDAQYWVQHLRQPVRFADAIAAALADGARTFIEV 796
Query: 399 APHGLMQALLRRTTKDGCVNIPLCRRQTESPANFLLAALGQLHMNGLRPNIEALYEPDSF 458
P ++ +++T +D ++I RR +F LAAL QL + G+ + L
Sbjct: 797 GPGPVLTESIKQTLRDAILSIATLRRDAPELLSF-LAALAQLFVAGVAVDWSPLV----- 850
Query: 459 PVPRGTPCLSPCIFWNHEDDW 479
P G P + + W
Sbjct: 851 YGPDGRLVELPTYPFQRQRFW 871
>gnl|CDD|223408 COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism].
Length = 310
Score = 88.5 bits (220), Expect = 3e-19
Identities = 71/309 (22%), Positives = 116/309 (37%), Gaps = 33/309 (10%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
FV+ G GSQ GM ++L + +A D LG D+ ++ + N+
Sbjct: 6 FVFPGQGSQSLGMGKDL--YENSPEAKETFDEADEALGFDLWALVFEGPEEELNLTQNTQ 63
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREA 236
A++ R L + GL G++PD GHSLGE A G +A
Sbjct: 64 PALLLV--SLAAYR---VLAEQGL-------GVKPDFVAGHSLGEYSALAAAGVLSFEDA 111
Query: 237 CLGGYARGYASKVYKLEKPGLMVSV-GLNYKDL------TDLPPSVDIACHNSDDNTTIS 289
RG + G M +V GL+ + + V+IA +NS IS
Sbjct: 112 LKLVRKRGKLMQEAVPRGEGGMAAVLGLDDEQVEKACEEAAQGTVVEIANYNSPGQIVIS 171
Query: 290 GAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKW 349
G +E +E EILK + +HS +KP A + +A++ +
Sbjct: 172 GTKEALEKAAEILKEAGAKRAIPLPVSGPFHSPLMKPAA----DELAEALEKVRFSDPLV 227
Query: 350 --ISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPENAI--VIEVAPHGLMQ 405
IS+ + + E VR+TE + + + +E+ P ++
Sbjct: 228 PVISNVDAKPVLDGEEI----RELLAKQLTSPVRWTETVETLKADGVTRFVEIGPGKVLT 283
Query: 406 ALLRRTTKD 414
L +R K
Sbjct: 284 GLAKRILKG 292
>gnl|CDD|232839 TIGR00128, fabD, malonyl CoA-acyl carrier protein transacylase.
This enzyme of fatty acid biosynthesis transfers the
malonyl moeity from coenzyme A to acyl-carrier protein.
The seed alignment for this family of proteins contains
a single member each from a number of bacterial species
but also an additional pair of closely related,
uncharacterized proteins from B. subtilis, one of which
has a long C-terminal extension [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 290
Score = 67.5 bits (165), Expect = 3e-12
Identities = 79/308 (25%), Positives = 118/308 (38%), Gaps = 33/308 (10%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
+V+ G GSQ GM ++L P + +F D+ LG D+ K+ + +
Sbjct: 5 YVFPGQGSQTVGMGKDLYEQYPIAKELF--DQASEALGYDLKKLCQEGPAEELNKTQYTQ 62
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREA 236
A+ YV + LK G++PD GHSLGE A G D A
Sbjct: 63 PAL-------YVVSAILYLKLK------EQGGLKPDFAAGHSLGEYSALVAAGALDFETA 109
Query: 237 CLGGYARGYASKVYKLEKPGLMVSV-GLNYKDLTDL-----PPSVDIACHNSDDNTTISG 290
RG + E G M +V GL+ + L VD+A NS ISG
Sbjct: 110 LKLVKKRGELMQEAVPEGGGAMAAVIGLDEEQLAQACEEATENDVDLANFNSPGQVVISG 169
Query: 291 AQEDVEPYLEILKAKNIFYRVV--NSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKRSAK 348
++ VE + K R V S A+HSR +KP A K E + N +
Sbjct: 170 TKDGVEAAAALFKEMGA-KRAVPLEVS-GAFHSRFMKPAAEKFAETLEACQFNDP--TVP 225
Query: 349 WISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPENAIV--IEVAPHGLMQA 406
IS+ + N + E VR+T++ + + EV P ++
Sbjct: 226 VISNVDAKPYTNGDRIK----EKLSEQLTSPVRWTDSVEKLMARGVTEFAEVGPGKVLTG 281
Query: 407 LLRRTTKD 414
L++R D
Sbjct: 282 LIKRIKND 289
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are
encoded near genes for homologs of PfaB, PfaC, and/or
PfaD.
Length = 2582
Score = 57.3 bits (138), Expect = 2e-08
Identities = 75/323 (23%), Positives = 123/323 (38%), Gaps = 50/323 (15%)
Query: 118 VYAGMGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
++AG GSQ+ M REL F RQA + D V+ G + + P D+ +
Sbjct: 584 LFAGQGSQYLNMGRELACNFPEVRQAAADMDSVFTQAGKGALSPVLYPIPVFNDESRKAQ 643
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREA 236
+T Q + +G L +G ++ G + D GHS GE A G +
Sbjct: 644 EEALTNTQ--HAQSAIGTLS-MGQYKLFTQAGFKADMTAGHSFGELSALCAAGVISDDDY 700
Query: 237 CLGGYARGYASKVYKLE-KPGLMVSVGLNYKDLTDLPPS-------VDIACHNSDDNTTI 288
+ ++RG A E G M +V L + + V IA +NS I
Sbjct: 701 MMLAFSRGQAMAAPTGEADIGFMYAVILAVVGSPTVIANCIKDFEGVSIANYNSPTQLVI 760
Query: 289 SGAQEDVEPYLEILKAKNIFYRVVNSSFI-AYHSRQVKPLAPKVLELFQQAVQNPKKRSA 347
+G ++ + LK K ++ + A+H+ PL + F A+ K
Sbjct: 761 AGVSTQIQIAAKALKEKG--FKAIPLPVSGAFHT----PLVAHAQKPFSAAIDKAK---- 810
Query: 348 KWISSSIPEEEWNSP-LAQYS--SAEYHVNN-----------FLHTVRFTEA--CAYIPE 391
+N+P + YS + + H N+ L +V F+E Y
Sbjct: 811 -----------FNTPLVPLYSNGTGKLHSNDAAAIKKALKNHMLQSVHFSEQLEAMYAAG 859
Query: 392 NAIVIEVAPHGLMQALLRRTTKD 414
+ +E P ++Q L+ T KD
Sbjct: 860 ARVFVEFGPKNILQKLVENTLKD 882
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 39.8 bits (92), Expect = 0.006
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 35/112 (31%)
Query: 591 VPVFPSMLREFIMSTNQISNLNPGCHAQI----VYNGNLMVYLDTILKIKVFLELSEDGV 646
+P PS L+E +S NQ+++L P +++ YN L +
Sbjct: 337 LPTLPSGLQELSVSDNQLASL-PTLPSELYKLWAYNNRLT------------------SL 377
Query: 647 PVFPSMLREFIMSTNQISNLNPVFLELSEDEVPVFPSMLREFIMSTKHISNL 698
P PS L+E I+S N++++L PV PS L+E ++S +++L
Sbjct: 378 PALPSGLKELIVSGNRLTSL------------PVLPSELKELMVSGNRLTSL 417
Score = 34.4 bits (78), Expect = 0.22
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 591 VPVFPSMLREFIMSTNQISNLN---PGCHAQIVYNGNLMVYLDTI----LKIKVFLELSE 643
+P P LR +S NQ+++L PG +++ N + +L + K+ +F
Sbjct: 237 LPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFS-NPLTHLPALPSGLCKLWIFGN-QL 294
Query: 644 DGVPVFPSMLREFIMSTNQISNLNPVFLELSE--------DEVPVFPSMLREFIMSTKHI 695
+PV P L+E +S NQ+++L + EL + +P PS L+E +S +
Sbjct: 295 TSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQL 354
Query: 696 SNL 698
++L
Sbjct: 355 ASL 357
Score = 30.5 bits (68), Expect = 4.0
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 19/88 (21%)
Query: 591 VPVFPSMLREFIMSTNQISNLN--PGCHAQIVYNGNLMVYLDTILKIKVFLELSEDGVPV 648
+P PS L+E I+S N++++L P +++ +GN + L P+
Sbjct: 377 LPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSL-----------------PM 419
Query: 649 FPSMLREFIMSTNQISNLNPVFLELSED 676
PS L + NQ++ L + LS +
Sbjct: 420 LPSGLLSLSVYRNQLTRLPESLIHLSSE 447
>gnl|CDD|132175 TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit.
Members of this protein family are the epsilon subunit
of malonate decarboxylase. This subunit has
malonyl-CoA/dephospho-CoA acyltransferase activity.
Malonate decarboxylase may be a soluble enzyme, or
linked to membrane subunits and active as a sodium pump.
The epsilon subunit is closely related to the malonyl
CoA-acyl carrier protein (ACP) transacylase family
described by TIGR00128, but acts on an ACP subunit of
malonate decarboxylase that has an unusual coenzyme A
derivative as its prothetic group.
Length = 295
Score = 34.2 bits (79), Expect = 0.17
Identities = 23/120 (19%), Positives = 35/120 (29%), Gaps = 20/120 (16%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
++ G GSQ GM L LG+D ++ + L S
Sbjct: 3 LLFPGQGSQRAGM---LAELPDHPAVAAVLAEASDVLGIDPRELDD-------AEALAST 52
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREA 236
+ C + L A+ P G+S+GE A G +A
Sbjct: 53 RSAQLC---ILAAGVA-------AWRALLALLPRPSAVAGYSVGEYAAAVVAGVLTFDDA 102
>gnl|CDD|238649 cd01328, FSL_SPARC, Follistatin-like SPARC (secreted protein,
acidic, and rich in cysteines) domain;
SPARC/BM-40/osteonectin is a multifunctional
glycoprotein which modulates cellular interaction with
the extracellular matrix by its binding to structural
matrix proteins such as collagen and vitronectin. The
protein it composed of an N-terminal acidic region, a
follistatin (FS) domain and an EF-hand calcium binding
domain. The FS domain consists of an N-terminal beta
hairpin (FOLN/EGF-like domain) and a small hydrophobic
core of alpha/beta structure (Kazal domain) and has five
disulfide bonds and a conserved N-glycosylation site.
The FSL_SPARC domain is a member of the superfamily of
kazal-like proteinase inhibitors and follistatin-like
proteins.
Length = 86
Score = 30.9 bits (70), Expect = 0.37
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 13/55 (23%)
Query: 522 LVDVYEKLCAQHHKNGLDETF--VCEEYKMKSLVEVTSTGC------HAQIVYNG 568
VD K+C +ETF CE Y+ + L + GC H + Y G
Sbjct: 32 EVDDRRKVCTND-----NETFDSDCELYRTRCLCKGGKKGCRGPKYQHLHLDYYG 81
>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 1525
Score = 32.7 bits (74), Expect = 0.78
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
Query: 308 FYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYS 367
FY V + + + P K L ++ + IS +PE N Y
Sbjct: 346 FYEKVIALKKSIGPKLANPSILKWRLLLDAFLETANQEQRF-ISDEVPECIRNFLSFVYD 404
Query: 368 SAEYHVNNFLHTVRFTE--ACAYIPE 391
S++Y + + F IP
Sbjct: 405 SSKYLDKDIVSRTIFERLNVGDDIPS 430
>gnl|CDD|215401 PLN02752, PLN02752, [acyl-carrier protein] S-malonyltransferase.
Length = 343
Score = 32.0 bits (73), Expect = 0.90
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 14/154 (9%)
Query: 112 KRPVWFVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDD 171
K F++ G G+Q GM +E P +A+F D+ LG D++ + + D
Sbjct: 37 KPTTAFLFPGQGAQAVGMGKEAA-EVPAAKALF--DKASEILGYDLLDVCVNGPKEKLDS 93
Query: 172 ILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGE-NGVAYADGC 230
+ S AI YV L A++K+ + +AV D G SLGE + +A G
Sbjct: 94 TVVSQPAI-------YVAS-LAAVEKLRARDGGQAVIDSVDVCAGLSLGEYTALVFA-GA 144
Query: 231 FDIREACLGGYARGYASKVYKLEKPGLMVSV-GL 263
+ RG A + P MVSV GL
Sbjct: 145 LSFEDGLKLVKLRGEAMQAAADAGPSGMVSVIGL 178
>gnl|CDD|132866 cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like
phospholipase domain containing protein 6. Bacterial
patatin-like phospholipase domain containing protein 6.
PNPLA6 is commonly known as Neuropathy Target Esterase
(NTE). NTE has at least two functional domains: the
N-terminal domain putatively regulatory domain and the
C-terminal catalytic domain which shows esterase
activity. NTE shows phospholipase activity for
lysophosphatidylcholine (LPC) and phosphatidylcholine
(PC). Exposure of NTE to organophosphates leads to
organophosphate-induced delayed neurotoxicity (OPIDN).
OPIDN is a progressive neurological condition that is
characterized by weakness, paralysis, pain, and
paresthesia. This group includes YCHK and rssA from
Escherichia coli as well as Ylbk from Bacillus
amyloliquefaciens.
Length = 175
Score = 30.3 bits (69), Expect = 2.2
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 198 IGLTEILRAVGIEPDGYLGHSLGE-NGVAYADGCFDIRE 235
IG+ L GIE D G S+G G YA G D E
Sbjct: 16 IGVLRALEEEGIEIDIIAGSSIGALVGALYAAGHLDALE 54
>gnl|CDD|203963 pfam08503, DapH_N, Tetrahydrodipicolinate succinyltransferase
N-terminal. This domain is found at the N-terminus of
tetrahydrodipicolinate N-succinyltransferase (DapH)
which catalyzes the acylation of L-2-amino-6-oxopimelate
to 2-N-succinyl-6-oxopimelate in the
meso-diaminopimelate/lysine biosynthetic pathway of
bacteria, blue-green algae, and plants. The N-terminal
domain as defined here contains three alpha-helices and
two twisted hairpin loops.
Length = 82
Score = 28.3 bits (64), Expect = 2.7
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 267 DLTDLPPSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVN 313
+L + + +D+ + G ED++P+LE K K Y + N
Sbjct: 25 NLEGIDFE-SVEVFGNDNFGVLFGEWEDIKPFLEANKDKIEDYVIEN 70
>gnl|CDD|197282 cd09186, PLDc_FAM83F_N, N-terminal phospholipase D-like domain of
the uncharacterized protein, Family with sequence
similarity 83F. N-terminal phospholipase D (PLD)-like
domain of the uncharacterized protein, Family with
sequence similarity 83F (FAM83F). Since the N-terminal
PLD-like domain of FAM83 proteins shows only trace
similarity to the PLD catalytic domain and lacks the
functionally important histidine residue, FAM83 proteins
may share a similar three-dimensional fold with PLD
enzymes, but are most unlikely to carry PLD activity.
The N-terminus of FAM83F shows high homology to other
FAM83 family members, indicating that FAM83F might have
arisen early in vertebrate evolution by duplication of a
gene in the FAM83 family.
Length = 268
Score = 29.1 bits (65), Expect = 7.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 579 KIKVFLELSEDGVPVFPSMLREFIMSTNQISNL 611
++ V++ L E+GV F M +S I N+
Sbjct: 162 RVPVYIILDENGVKHFLEMCSRLQLSDFHIRNI 194
Score = 29.1 bits (65), Expect = 7.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 634 KIKVFLELSEDGVPVFPSMLREFIMSTNQISNL 666
++ V++ L E+GV F M +S I N+
Sbjct: 162 RVPVYIILDENGVKHFLEMCSRLQLSDFHIRNI 194
>gnl|CDD|131863 TIGR02816, pfaB_fam, PfaB family protein. The protein PfaB is part
of four gene locus, similar to polyketide biosynthesis
systems, responsible for omega-3 polyunsaturated fatty
acid biosynthesis in several high pressure and/or
cold-adapted bacteria. The fairly permissive trusted
cutoff set for this model allows detection of homologs
encoded near homologs to other proteins of the locus:
PfaA, PfaC, and/or PfaD. The likely role in every case
is either polyunsaturated fatty acid or polyketide
biosynthesis.
Length = 538
Score = 29.3 bits (65), Expect = 8.2
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 103 PISQLTQPIKRPVWFVYAGMGSQWPGMARELMWFAP 138
P+ K + FVY G+G+ + M + + P
Sbjct: 171 PLGSNNDNAKAGLAFVYPGVGTVYADMFNDFHQYFP 206
>gnl|CDD|224837 COG1926, COG1926, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 220
Score = 28.4 bits (64), Expect = 9.8
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 234 REACLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTDL 271
+A A +V L P +VG Y+D +
Sbjct: 164 EDAAAE--LESEADEVVCLYMPAPFEAVGEFYRDFRQV 199
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.428
Gapped
Lambda K H
0.267 0.0893 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,287,510
Number of extensions: 3613278
Number of successful extensions: 2886
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2852
Number of HSP's successfully gapped: 27
Length of query: 700
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 596
Effective length of database: 6,324,786
Effective search space: 3769572456
Effective search space used: 3769572456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.4 bits)