RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8296
(700 letters)
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 382 bits (983), Expect = e-120
Identities = 170/438 (38%), Positives = 254/438 (57%), Gaps = 23/438 (5%)
Query: 93 RTILNFNPFCPISQLTQPIKRPVWFVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRP 152
+L P Q +RP+WF+ +GMG+QW GM LM FR +I D +P
Sbjct: 472 YAVLGGERGGPEVQQVPAGERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKP 531
Query: 153 LGLDIVKIITSDDPTTFDDILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPD 212
GL + +++ S D +TFDDI++SFV++ A++ IGL ++L +G+ PD
Sbjct: 532 FGLKVSQLLLSTDESTFDDIVHSFVSLT-------------AIQ-IGLIDLLSCMGLRPD 577
Query: 213 GYLGHSLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTD-L 271
G +GHSLGE YADGC EA L Y RG K L G M +VGL++++
Sbjct: 578 GIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKEAHLPP-GAMAAVGLSWEECKQRC 636
Query: 272 PPSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKV 331
PP V ACHNS D TISG Q V ++E L+ + +F + V + +A+HS ++ +AP +
Sbjct: 637 PPGVVPACHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTGGMAFHSYFMEAIAPPL 696
Query: 332 LELFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPE 391
L+ ++ ++ PK RSA+W+S+SIPE +W+S LA+ SSAEY+VNN + V F EA ++PE
Sbjct: 697 LQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWHVPE 756
Query: 392 NAIVIEVAPHGLMQALLRRTTKDGCVNIPLCRRQTESPANFLLAALGQLHMNGLRPNIEA 451
+A+V+E+APH L+QA+L+R K C IPL ++ F LA +G+LH++G+ N A
Sbjct: 757 HAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHRDNLEFFLAGIGRLHLSGIDANPNA 816
Query: 452 LYEPDSFPVPRGTPCLSPCIFWNHEDDWDSGIAPNIQNN------EVTEVDLLNKEYRA- 504
L+ P FP PRGTP +SP I W+H WD A + N + +D ++
Sbjct: 817 LFPPVEFPAPRGTPLISPLIKWDHSLAWDVPAAEDFPNGSGSPSAAIYNIDTSSESPDHY 876
Query: 505 LFSHQVNGVVIPPLSLFL 522
L H ++G V+ P + +L
Sbjct: 877 LVDHTLDGRVLFPATGYL 894
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 383 bits (986), Expect = e-116
Identities = 164/443 (37%), Positives = 253/443 (57%), Gaps = 23/443 (5%)
Query: 112 KRPVWFVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDD 171
KRPVWF+ +GMG+QW GM LM FR +I D+ +PLGL + ++ S D DD
Sbjct: 489 KRPVWFICSGMGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVLDD 548
Query: 172 ILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCF 231
I++SFV++ +++ I L ++L ++G++PDG +GHSLGE YADGC
Sbjct: 549 IVSSFVSLT-------------SIQ-IALIDLLTSLGLQPDGIIGHSLGEVACGYADGCL 594
Query: 232 DIREACLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTD-LPPSVDIACHNSDDNTTISG 290
EA L Y RGY K + PG M +VGL++++ PP + ACHNS D TISG
Sbjct: 595 TQEEAVLSSYWRGYCIKEANVL-PGAMAAVGLSWEECKQRCPPGIVPACHNSKDTVTISG 653
Query: 291 AQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKWI 350
Q + +L+ LK +++F + V + IA+HS ++ +AP +L ++ + +PK RS +W+
Sbjct: 654 PQAAMSEFLQQLKREDVFVKEVRTGGIAFHSYFMESIAPTLLRQLRKVILDPKPRSKRWL 713
Query: 351 SSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPENAIVIEVAPHGLMQALLRR 410
S+SIPE +W LA+ SAEY VNN + V F EA ++P +A+V+E+APH L+QA+L+R
Sbjct: 714 STSIPEAQWQGSLARTFSAEYSVNNLVSPVLFQEALQHVPAHAVVVEIAPHALLQAVLKR 773
Query: 411 TTKDGCVNIPLCRRQTESPANFLLAALGQLHMNGLRPNIEALYEPDSFPVPRGTPCLSPC 470
+ + C IPL ++ F L+ +G+LH+ G+ N L+ P FP PRGTP +SP
Sbjct: 774 SLESSCTIIPLMKKDHRDNLEFFLSNVGRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPH 833
Query: 471 IFWNHEDDWDSGIAPN------IQNNEVTEVDLLNKEYRA-LFSHQVNGVVIPPLSLFLV 523
I W+H WD A + + V + D+ + L H ++G V+ P + +L
Sbjct: 834 IKWDHSQAWDVPSAADFPSGSSCSSVAVYKFDVSPESPDHYLVDHCIDGRVLFPGTGYLW 893
Query: 524 DVYEKLCAQHHKNGLDETFVCEE 546
++ L +N + V E+
Sbjct: 894 LTWKTLARALSQNLEETPVVFED 916
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 146 bits (370), Expect = 1e-36
Identities = 79/362 (21%), Positives = 136/362 (37%), Gaps = 47/362 (12%)
Query: 112 KRPVWFVYAGMGSQWPGMARELM-WFAPFRQAIFECDRVYRP-LGLDIVKIIT-SDDPTT 168
+ V F++ G GSQW GM EL+ F I CD P + ++ +
Sbjct: 532 RNVV-FLFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAPGAPG 590
Query: 169 FDDILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYAD 228
D + V +L A+ + L E+ R+ G+EP +GHS GE A+
Sbjct: 591 LDRVD-------------VVQPVLFAVM-VSLAELWRSYGVEPAAVVGHSQGEIAAAHVA 636
Query: 229 GCFDIREACLGGYARGYASKVYKLEKPGLMVSVGLNYKD----LTDLPPSVDIACHNSDD 284
G + +A R + L G M +V L L + +A N
Sbjct: 637 GALTLEDAAKLVVGRSRL--MRSLSGEGGMAAVALGEAAVRERLRPWQDRLSVAAVNGPR 694
Query: 285 NTTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKK 344
+ +SG + + E A+ I R ++ + A HS Q++ + ++LE P+
Sbjct: 695 SVVVSGEPGALRAFSEDCAAEGIRVRDIDVDY-ASHSPQIERVREELLETTGDI--APRP 751
Query: 345 RSAKWISS----SIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPEN--AIVIEV 398
+ S+ S+ E A Y N TVRF +A + E+ IEV
Sbjct: 752 ARVTFHSTVESRSMDGTEL--------DARYWYRNLRETVRFADAVTRLAESGYDAFIEV 803
Query: 399 APHGLMQALLRRTTKD-----GCVNIPLCRRQTESPANFLLAALGQLHMNGLRPNIEALY 453
+PH ++ + ++ V + R + FL ++ H++G+ +
Sbjct: 804 SPHPVVVQAVEEAVEEADGAEDAVVVGSLHRDGGDLSAFL-RSMATAHVSGVDIRWDVAL 862
Query: 454 EP 455
Sbjct: 863 PG 864
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 145 bits (368), Expect = 3e-36
Identities = 78/363 (21%), Positives = 133/363 (36%), Gaps = 53/363 (14%)
Query: 113 RPVWFVYAGMGSQWPGMARELM-WFAPFRQAIFECDRVYRP-LGLDIVKIITSDDPTTFD 170
V+ G G+QW GMAR+L+ F +I +C+R P + + +++ P D
Sbjct: 552 GVA-MVFPGQGAQWQGMARDLLRESQVFADSIRDCERALAPHVDWSLTDLLSGARP--LD 608
Query: 171 DILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGC 230
+ V L A+ + L + R+ G+EP +GHS GE A+ G
Sbjct: 609 RVD-------------VVQPALFAVM-VSLAALWRSHGVEPAAVVGHSQGEIAAAHVAGA 654
Query: 231 FDIREACLGGYARGYASKVYKLEKPGLMVSVGLNYKD----LTDLPPSVDIACHNSDDNT 286
+ +A R + +L G M S GL + + ++ IA N +
Sbjct: 655 LTLEDAAKLVAVRSRV--LRRLGGQGGMASFGLGTEQAAERIGRFAGALSIASVNGPRSV 712
Query: 287 TISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKRS 346
++G ++ + +A+ R + + A HS QV+ L E + S
Sbjct: 713 VVAGESGPLDELIAECEAEAHKARRIPVDY-ASHSPQVESL----REELLTELAGISPVS 767
Query: 347 AK--WISS----SIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPEN--AIVIEV 398
A S+ I Y N VRF +A + E +EV
Sbjct: 768 ADVALYSTTTGQPIDTATM--------DTAYWYANLREQVRFQDATRQLAEAGFDAFVEV 819
Query: 399 APHGLMQALLRRTTKD------GCVNIPLCRRQTESPANFLLAALGQLHMNGLRPNIEAL 452
+PH ++ + T G + RR A+F ALG+ + G+ +
Sbjct: 820 SPHPVLTVGIEATLDSALPADAGACVVGTLRRDRGGLADFH-TALGEAYAQGVEVDWSPA 878
Query: 453 YEP 455
+
Sbjct: 879 FAD 881
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 127 bits (322), Expect = 6e-32
Identities = 62/350 (17%), Positives = 102/350 (29%), Gaps = 63/350 (18%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
++ G + + + D D + P D +
Sbjct: 101 LLFPGQAAPVHAD------RGALGHLLGDADAGTGSD-PD-----SGVKPAEPVDTAVAQ 148
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREA 236
AI+ + L +G P G LGHSLGE G D +
Sbjct: 149 PAIIADS--------------LAGIRWLDRLGARPVGALGHSLGELAALSWAGALDADDT 194
Query: 237 CLGGYARGYASKVYKL-----EKPGLMVSVGLNYKDLTDL--PPSVDIACHNSDDNTTIS 289
ARG + E P M+S+ + +L +A N + + ++
Sbjct: 195 LALARARG------EAMSAATEAPSGMLSLRADLAAARELAAGTGAVVAVDNGERHVVVA 248
Query: 290 GAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKW 349
G + +++ E + I + S A+HS + P E ++A W
Sbjct: 249 GTRPELDRVAEAARHAGIEATPLAVSH-AFHSPLMAP----AAEALRRAA-----GRLPW 298
Query: 350 ISSSIPEEEWNS-----PLAQYSSAEYHVNNFLHTVRFTEACAYIPENAIVIEVAPHGLM 404
P S A E V VRF EA + + +V EV P ++
Sbjct: 299 RRPERP---VASTVTGAWWADEDPVEVLVRQLTGPVRFREALGLLDADLLV-EVGPGRML 354
Query: 405 QALLRRTTKDGCVNIPLCRRQTESPANFLLAALGQLHMNGLRPNIEALYE 454
AL + S A + A L G + +
Sbjct: 355 SALAEAAGRT----AVSLDAGAASAAG-MAAGTAALFAAGAVDDATPFFA 399
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 101 bits (253), Expect = 3e-22
Identities = 47/276 (17%), Positives = 86/276 (31%), Gaps = 81/276 (29%)
Query: 123 GSQWPGMARELMWFAPFRQAIFE-CDRVYRP-LGLDIVKIITSDDPTT----FD-----D 171
GSQ GM +L + Q ++ D ++ G I+ I+ ++P F
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI-NNPVNLTIHFGGEKGKR 1683
Query: 172 ILNSFVAIV--TCHQGCYVNRLL-----------------GALKK------------IGL 200
I ++ A++ T G + G L
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 201 TEILRAVGIEPDGYL--GHSLGENG--VAYADGCFDIREAC--LGGYARGYASK--VYKL 252
E L++ G+ P GHSLGE + A I + + RG + V +
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLA-DVMSIESLVEVV--FYRGMTMQVAVPRD 1800
Query: 253 EK-----------PGLMVSVGLNYKDLTDLPPS--------VDIACHNSDDNTT-ISGAQ 292
E PG + + + L + V+I +N ++ +G
Sbjct: 1801 ELGRSNYGMIAINPGRVA-ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL 1859
Query: 293 EDVE---PYLEILKAKNIFYRVVNSSFIAYHSRQVK 325
++ L +K + I + S +V+
Sbjct: 1860 RALDTVTNVLNFIKLQKIDIIELQKSL---SLEEVE 1892
Score = 85.1 bits (210), Expect = 5e-17
Identities = 76/422 (18%), Positives = 132/422 (31%), Gaps = 112/422 (26%)
Query: 5 NDFCSLVNQVFKEPINGLFYSGYTLLPTPTKAVHGSLLETMPYNNDFCSL-VNQVFKEPI 63
F ++N E F + Y L +H +L + ND + ++ K
Sbjct: 78 GQFDQVLNLCLTE-----FENCY-LE---GNDIH-ALAAKLLQENDTTLVKTKELIKN-- 125
Query: 64 NGLFYSGYTLLPTPTKAVHGS-LFK---------FTLWFRTILNF----NPFCPISQLTQ 109
+ + + P S LF+ + F N +L
Sbjct: 126 ---YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-------FGGQGNTDDYFEEL-- 173
Query: 110 PIKRPVWFVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTF 169
R ++ Y + + E + + + ++V+ GL+I++ + + T
Sbjct: 174 ---RDLYQTYHVLVGDLIKFSAET--LSELIRTTLDAEKVF-TQGLNILEWLENPSNTPD 227
Query: 170 DDILN----SFVAI---------VTCHQ-GCYVNRLLGALKKIGLT----EILRAVGI-E 210
D L S I VT G L LK G T ++ AV I E
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK--GATGHSQGLVTAVAIAE 285
Query: 211 PDGYLGHSLGENGVAYADGCFDIREACLGGYARGY-ASKVYK--LE----KPGLMVSV-G 262
D S + F I C Y + + LE P M+S+
Sbjct: 286 TDS--WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 263 LNYKDLTD--------LPPS--VDIACHNSDDNTTISGAQED---VEPYLEILKAKN--- 306
L + + D LP V+I+ N N +SG + + L KA +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 307 ---IFYR----VVNSSF--IA--YHSRQVKPLAPKVLELFQQAVQNPKKRSAKWISSS-- 353
I + ++ F +A +HS L +L + + K + + +
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHS----HLLVPASDLINKDLV---KNNVSFNAKDIQ 456
Query: 354 IP 355
IP
Sbjct: 457 IP 458
Score = 82.8 bits (204), Expect = 2e-16
Identities = 83/500 (16%), Positives = 165/500 (33%), Gaps = 135/500 (27%)
Query: 164 DDPTTFDDILNSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAV--GIEPDGYLG----H 217
D+PTT +++ F+ YV+ L+ K ++L E + YL H
Sbjct: 52 DEPTTPAELVGKFLG--------YVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGNDIH 102
Query: 218 SLGENGVAYADGCFDIREACLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTDLPPSVDI 277
+L A D + Y + ++P S
Sbjct: 103 AL----AAKLLQENDTTLVKTKELIKNYITARIMAKRP------------FDKKSNSALF 146
Query: 278 ACHNSDDNTTIS--GAQEDVEPYLEILKAKNIF--YRVVNSSFIAYHSRQVKPLAPKVLE 333
+ ++ G Q + + Y E L+ +++ Y V+ I + + + L L+
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELR--DLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 334 ---LFQQAVQNPKKRSAKWIS--SSIPEEEWNSPLAQYSSAEYHVN-NFLHTVRFTEACA 387
+F Q + +W+ S+ P++++ L S + +
Sbjct: 205 AEKVFTQGLN-----ILEWLENPSNTPDKDY---LL---SIPISCPLIGV-----IQLAH 248
Query: 388 YIPENAIVIEVA--PHGLMQALLRRTTKDGCVN---IPLCRRQTESPANFLLAALGQLHM 442
Y+ + ++ G +++ L+ T G + +T+S +F ++ + +
Sbjct: 249 YV----VTAKLLGFTPGELRSYLKGAT--GHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 443 N---GLR-----PN--IEALYEPDSFPVPRGTPCLSP--CIFWNHEDDWDSGIAPN-IQN 489
G+R PN + DS G P SP I S + +Q
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP--SPMLSI---------SNLTQEQVQ- 350
Query: 490 NEVTEVDLLNKE-------YRALFSHQVNG---VVI--PPLSLF-LVDVYEKLCAQHHKN 536
V+ N +L VNG +V+ PP SL+ L K A +
Sbjct: 351 ---DYVNKTNSHLPAGKQVEISL----VNGAKNLVVSGPPQSLYGLNLTLRKAKA---PS 400
Query: 537 GLDETFVCEEY-KMKSLVEV----TSTGCHAQIVYNGNLMVYLDTILKIKVFLELSEDGV 591
GLD++ + + + K ++ H+ L + +L ++ V
Sbjct: 401 GLDQSRI--PFSERKLKFSNRFLPVASPFHSH---------LLVPASD-LINKDLVKNNV 448
Query: 592 PVFPSMLREFIMSTNQISNL 611
++ + T S+L
Sbjct: 449 SFNAKDIQIPVYDTFDGSDL 468
Score = 29.6 bits (66), Expect = 4.6
Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 47/132 (35%)
Query: 2 PYNNDFCSLVNQVFKEPINGLFYSGYTL-LP---TPT----KAVHGSLLETMPYNNDFCS 53
L+N+ + N + ++ + +P T + + GS+ E
Sbjct: 430 HLLVPASDLINKDLVK--NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE---------R 478
Query: 54 LVNQVFKEPINGLFYSGYTLLPTPTKAVHGSLFKFTLWFRTILNFNP--FCPISQLTQPI 111
+V+ + + P+ + T KA H IL+F P + LT
Sbjct: 479 IVDCIIRLPVK------WETT-TQFKATH------------ILDFGPGGASGLGVLTHRN 519
Query: 112 KRPVWFVYAGMG 123
K G G
Sbjct: 520 KD-------GTG 524
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 64.4 bits (158), Expect = 2e-11
Identities = 53/200 (26%), Positives = 72/200 (36%), Gaps = 38/200 (19%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
+++ G GSQ GM R L F F D V LG I + D D L+
Sbjct: 4 YMFPGQGSQAKGMGRAL--FDAFPALTARADGV---LGYSIRALCQDDP----DQRLSQT 54
Query: 177 V----AIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFD 232
A+ VN R PD GHSLGE +A G FD
Sbjct: 55 QFTQPALYV------VN--------ALSYLKRREEEAPPDFLAGHSLGEFSALFAAGVFD 100
Query: 233 IREACLGGYARGYA-SKVYKLEKPGLMVSV-GLNYKDLTDL-----PPSVDIACHNSDDN 285
RG + G M +V GL+ + + +L +VDIA NS
Sbjct: 101 FETGLALVKKRGELMGDA----RGGGMAAVIGLDEERVRELLDQNGATAVDIANLNSPSQ 156
Query: 286 TTISGAQEDVEPYLEILKAK 305
ISGA++++ +A
Sbjct: 157 VVISGAKDEIARLQVPFEAA 176
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid,
decode biostructures, dried seaweed, acyltran
transferase; 2.30A {Burkholderia pseudomallei}
Length = 394
Score = 63.9 bits (156), Expect = 6e-11
Identities = 53/227 (23%), Positives = 78/227 (34%), Gaps = 50/227 (22%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
F++ G GSQ GM L F F + D V LG I + D D L
Sbjct: 9 FMFPGQGSQAKGMGGAL--FDRFADLTAQADAV---LGYSIRALCVDDP----RDELGRT 59
Query: 177 V----AIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAY----AD 228
A+ VN L G PD GHSLGE + A
Sbjct: 60 QFTQPALYV------VNALT-------YYAKCEDSGETPDFLAGHSLGE----FNALLAA 102
Query: 229 GCFDIREACLGGYARGYA-SKVYKLEKPGLMVSV-GLNYKDLTDL-----PPSVDIACHN 281
GCFD R S+ + G M ++ + + + IA N
Sbjct: 103 GCFDFETGLKLVARRAELMSQA----RDGAMAAIVNASREQIERTLDEHGLVDTAIANDN 158
Query: 282 SDDNTTISGAQEDVEPYLEILKAKNIFYRVV--NSSFIAYHSRQVKP 326
+ ISG ++ + + + R + N+S A+HS+ ++P
Sbjct: 159 TPSQLVISGPAHEIARAEALFQHDRV--RYLRLNTS-GAFHSKFMRP 202
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta
hydrolase-like core; 2.00A {Streptomyces coelicolor}
SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Length = 317
Score = 59.5 bits (145), Expect = 9e-10
Identities = 61/345 (17%), Positives = 105/345 (30%), Gaps = 58/345 (16%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
V G G+Q PG + + + +GLD+ T D D +
Sbjct: 5 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDA---IGLDLAHFGTKADADEIRDTSVAQ 61
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREA 236
+V AL G P GHS+GE A G D A
Sbjct: 62 PLLVAAGILSAA-----ALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAA 116
Query: 237 CLGGYARGYASKVYKLEKPGLMVSV-GLNYKDLTDL--PPSVDIACHNSDDNTTISGAQE 293
RG A M ++ G + + + A N +G E
Sbjct: 117 LSLVRRRGLAMAEAAAVTETGMSALLGGDPEVSVAHLERLGLTPANVNGAGQIVAAGTME 176
Query: 294 DVEPYLEILK---AKNIFYRVV--NSSFIAYHSRQVKPLAPKVLELFQQA---------V 339
+ L K + +VV + A+H+R + P K+ E + V
Sbjct: 177 QLAA-LNEDKPEGVR----KVVPLKVA-GAFHTRHMAPAVDKLAEAAKALTPADPKVTYV 230
Query: 340 QNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPENAI--VIE 397
N + + ++S E + + Q ++ VR+ E + +IE
Sbjct: 231 SN---KDGRAVAS--GTEVLDRLVGQVANP----------VRWDLCMETFKELGVTAIIE 275
Query: 398 VAPHGLMQALLRRTTKD-GCVNIPLCRRQTESPANF--LLAALGQ 439
V P G + L +R + + ++P + + +
Sbjct: 276 VCPGGTLTGLAKRALPGVKTLAL-------KTPDDLDAARELVAE 313
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics,
protein structure initiative; 2.10A {Clostridium
perfringens}
Length = 336
Score = 56.8 bits (138), Expect = 8e-09
Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 55/218 (25%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKIITSDDPTTFDDILNS 175
F++AG G+Q+ GM +E + +F LG+D+ ++ +D + +LN
Sbjct: 6 FLFAGQGAQYVGMGKEFFDNFEESKEVFKRSSEA---LGIDMEELCFNDP----EGLLNK 58
Query: 176 FV----AIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAY----A 227
AI+T + + L +G++ G SLGE Y
Sbjct: 59 TEFTQPAIITT--------------NMAILTALDKLGVKSHISCGLSLGE----YSALIH 100
Query: 228 DGCFDIREACLGGYARGYASKVYKL------EKPGLMVSV-GLNYKDLTDL------PPS 274
G + + RG K E G MV+V + + + ++
Sbjct: 101 SGAINFEDGVKLVKKRG------KFMQEAVAEGIGGMVAVLRMTPEQVDEIIEKSSPYGI 154
Query: 275 VDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVV 312
V+ A +NS ISG +E +E +K R +
Sbjct: 155 VEGANYNSPGQIVISGELVALEKAMEFIKEVGG--RAI 190
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis,
malonyl-COA, acyl carrier protein TRAN (MCAT), FABD,
acyltransferase; 2.10A {Streptococcus pneumoniae}
Length = 307
Score = 54.8 bits (133), Expect = 3e-08
Identities = 48/210 (22%), Positives = 78/210 (37%), Gaps = 52/210 (24%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
F++AG G+Q+ GM R+ P + DR + LG D+ +I +++ D LN
Sbjct: 6 FLFAGQGAQYLGMGRDFYDQYPIVKETI--DRASQVLGYDLRYLIDTEE-----DKLNQT 58
Query: 177 V----AIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAY----AD 228
AI+ + + +L+ G +PD G SLGE Y A
Sbjct: 59 RYTQPAILAT--------------SVAIYRLLQEKGYQPDMVAGLSLGE----YSALVAS 100
Query: 229 GCFDIREACLGGYARGYASKVYKL------EKPGLMVSV-GLNYKDLTDL------PPSV 275
G D +A RG G MV+V + + + V
Sbjct: 101 GALDFEDAVALVAKRG------AYMEEAAPADSGKMVAVLNTPVEVIEEACQKASELGVV 154
Query: 276 DIACHNSDDNTTISGAQEDVEPYLEILKAK 305
A +N+ I+G V+ +E+L+
Sbjct: 155 TPANYNTPAQIVIAGEVVAVDRAVELLQEA 184
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT,
transferase; 2.50A {Helicobacter pylori}
Length = 321
Score = 54.8 bits (133), Expect = 4e-08
Identities = 63/335 (18%), Positives = 116/335 (34%), Gaps = 79/335 (23%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKIITSDDPTTFDDILNS 175
++ G GSQ GM + + +F L +D+ K + + +++L
Sbjct: 17 LLFPGQGSQCIGMGKSFYEGHTLAKELFERASNA---LKVDMKKTLFEE-----NELLKE 68
Query: 176 FV----AIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAY----A 227
AI Y +LL G++P LGHSLGE
Sbjct: 69 SAYTQPAIYLVSYIAY--QLLNKQANG---------GLKPVFALGHSLGE----VSAVSL 113
Query: 228 DGCFDIREACLGGYARGYASKVYKL------EKPGLMVSV-GLNYKDLTDL---PPSVDI 277
G D +A + RG K+ K M+ V G++ + L L +V
Sbjct: 114 SGALDFEKALKLTHQRG------KMMQEACANKDASMMVVLGVSEESLLSLCQRTKNVWC 167
Query: 278 ACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVV--NSSFIAYHSRQVKPLAPKVLELF 335
A N ++G ++D++ LK RVV S +A H ++P+ F
Sbjct: 168 ANFNGGMQVVLAGVKDDLKALEPTLKEMGA-KRVVFLEMS-VASHCPFLEPMI----FKF 221
Query: 336 QQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVN-----NFL-----HTVRFTEA 385
Q+ ++ K + + ++ E + N L VR+ +
Sbjct: 222 QELLEKSLKDKFHF------------EIISNATNEAYHNKAKAVELLSLQLTQPVRYQDC 269
Query: 386 CAYIPENA-IVIEVAPHGLMQALLRRTTKDGCVNI 419
+ I E+ +++ L +R + +++
Sbjct: 270 VKSNNDRVDIFFELGCGSVLKGLNKRLSNKPTISV 304
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP
transacylase, , nucleophili fatty acids biosynthesis;
2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A
Length = 303
Score = 54.5 bits (132), Expect = 4e-08
Identities = 34/192 (17%), Positives = 57/192 (29%), Gaps = 17/192 (8%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
+ G GSQ GM + I + LD+ ++ T+ D +
Sbjct: 5 LLAPGQGSQTEGMLSPWLQLPGAADQIAAWSKA---ADLDLARLGTTASTEEITDTAVAQ 61
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREA 236
IV ++ L + + GHS+GE G +A
Sbjct: 62 PLIVAA--TLLAHQELAR---------RCVLAGKDVIVAGHSVGEIAAYAIAGVIAADDA 110
Query: 237 CLGGYARGYASKVYKLEKPGLMVSV-GLNYKDLTDL--PPSVDIACHNSDDNTTISGAQE 293
RG +P M +V G + ++ + A N+ +G
Sbjct: 111 VALAATRGAEMAKACATEPTGMSAVLGGDETEVLSRLEQLDLVPANRNAAGQIVAAGRLT 170
Query: 294 DVEPYLEILKAK 305
+E E AK
Sbjct: 171 ALEKLAEDPPAK 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 5e-08
Identities = 67/475 (14%), Positives = 139/475 (29%), Gaps = 151/475 (31%)
Query: 263 LNYKDLTD--LPPSV-DIACHNSDDNTTISGAQEDVEPYLEILKAKNI---FYRVVNSSF 316
YKD+ V + C + D ++E+++ I+ +K+ R+ F
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID---HIIMSKDAVSGTLRL----F 68
Query: 317 IAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNF 376
S+Q E+ Q+ V+ + + K++ S I + E P +
Sbjct: 69 WTLLSKQE--------EMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRL 119
Query: 377 LHTVRFTEACAYIPENAIVIEVAPHGLMQALLRRTTKDGCVNIPLCRRQTESPANFLLAA 436
+ + + N + L QALL L PA +L
Sbjct: 120 YNDNQ-----VFAKYN-VSRLQPYLKLRQALLE-----------L------RPAKNVL-- 154
Query: 437 LGQLH-MNG-----LRPNIEALYEPDSFPVPRGTPCLSPCIFW---NHEDDWDSGIAPNI 487
+ + G + ++ S+ V IFW + + ++ + +
Sbjct: 155 ---IDGVLGSGKTWV--ALDVC---LSYKVQCKMDF---KIFWLNLKNCNSPETVL--EM 201
Query: 488 QNNEVTEVDLLNKEYRALFSHQVNGVVIPPLSLFLVDVYEKL----CAQHHKNGL---DE 540
+ ++D + + H N L + + +L ++ ++N L
Sbjct: 202 LQKLLYQID---PNWTSRSDHSSN----IKLR--IHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 541 TFVCEEYKMKSLVEVTSTGCHAQIVY---NGNLMVYLDTILKIKVFLELSEDG------- 590
V + C +I+ + +L + L+
Sbjct: 253 --VQN----AKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 591 ------VPVFPSMLREFIMSTNQISNLNPGCHAQIVYNGNLMVYLDTILKIKVFLELSED 644
+ P L ++ NP ++ + E D
Sbjct: 305 SLLLKYLDCRPQDLPR------EVLTTNP-------------------RRLSIIAESIRD 339
Query: 645 GVP-------VFPSMLREFIMSTNQISNLNP-----VFLELS--EDEVPVFPSML 685
G+ V L I S+ ++ L P +F LS + P++L
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSAHI-PTIL 391
Score = 49.9 bits (118), Expect = 2e-06
Identities = 77/537 (14%), Positives = 143/537 (26%), Gaps = 157/537 (29%)
Query: 2 PYNNDFCSLVNQVF-------KEPINGLFYSGYTLLPTPTKAVHGSLLETMPYNNDFC-- 52
ND NQVF +P L + L P + G +
Sbjct: 118 RLYND-----NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-----VLG----SGK 163
Query: 53 -SLVNQVFK-EPI-----NGLFYSGYTLLPTPTKAVHGSLFKF--TLWFRTILNFNPFCP 103
+ V + +F+ +P ++ + L ++ N+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-----ETVLEMLQKLLYQIDPNW---TS 215
Query: 104 ISQLTQPIKRPVWFVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVK---- 159
S + IK + + A + R L+ P+ + V
Sbjct: 216 RSDHSSNIKLRIHSIQAEL--------RRLLKSKPYENCLLVLLNVQNA---KAWNAFNL 264
Query: 160 ----IITSDDPTTFDDILNSFVAIVTCHQGCYVNRLLGALKKIGLTEIL-RAVGIEPDGY 214
++T+ D + + ++ ++ L + +L + + P
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHIS------LDHHSMTLTPDEVKSLLLKYLDCRPQ-- 316
Query: 215 LGHSLGENGVAYADGCFDI-REAC---------LGGYARGYAS-----KVYKLEKPGLMV 259
D+ RE + R + K +K ++
Sbjct: 317 -----------------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 260 SVGLN----------YKDLTDLPPSVDIACHNSDDNTTIS-----GAQEDVEPYLEILKA 304
LN + L+ PPS I +S + DV + L
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI------LLSLIWFDVIKSDVMVVVNKLHK 413
Query: 305 KNIFYRVVNSSFIAYHSRQ--VKPLAPKVLELFQQAVQ--NPKKRSAKWISSSIPEEE-W 359
++ + S I+ S +K L + V N K ++ +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 360 NSPLAQYSSAEYHVNNFLHT------------VRFTEACAYIPENAIVIEVAPHGLMQAL 407
YS +H+ N H RF E I + A ++ L
Sbjct: 474 ------YSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--QKI-RHDSTAWNASGSILNTL 524
Query: 408 --LRRTTKDGCVNIPLCRRQTESPANFLLAALGQLHMN--------GLRPNIEALYE 454
L+ C N P R + +FL L + L EA++E
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 55.4 bits (133), Expect = 6e-08
Identities = 43/289 (14%), Positives = 72/289 (24%), Gaps = 78/289 (26%)
Query: 117 FVYAGMGSQWPGMA--RELM-WFAPFRQAIFE-------------CDRVYRPLGLDIVKI 160
++ G G+ RE+ + F + + P GLDI++
Sbjct: 153 SIFGGQGNIEEYFDELREIYTTYPSFVEDLITSIAELLQSLAREWDAVKQYPKGLDILQW 212
Query: 161 ITSDDPTTFDDIL----NSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLG 216
+ + + D L SF I Y+ K +G + G G
Sbjct: 213 LHNPESQPDTDYLVSAPVSFPLIGLVQLAHYMI----TCKTLGRE--PGELLERFSGTTG 266
Query: 217 HSLGENGVAYADGCFD-----------IREACLGGYARGYASKVYKLE------------ 253
HS G A + G A L
Sbjct: 267 HSQGIVVAAAIATARTWDEFATAAKRAVELLFWIGLRSQQAYPRTSLAPSTLQDSVENGE 326
Query: 254 -KPGLMVSV-GLNYKDLTDL----------PPSVDIACHNSDDNTTISGAQED---VEPY 298
P M+S+ L + + + I+ NS N ++G +
Sbjct: 327 GTPTPMLSIRDLTRSAVQEHIDATNQHLPEDRHIGISLVNSARNFVVTGPPISLYGLNLR 386
Query: 299 LEILKAKN--------------IFYRVVNSSFIAYHSRQVKPLAPKVLE 333
L +KA F +HS + +L
Sbjct: 387 LRKVKAPTGLDQNRIPFTQRKARFVNRFLPITAPFHSPYLAGAHAHILG 435
Score = 41.9 bits (98), Expect = 0.001
Identities = 42/300 (14%), Positives = 96/300 (32%), Gaps = 71/300 (23%)
Query: 113 RPVWFVYAGMGSQWPGMARELMWFAPFRQAIFE-CDRVYRP-LGLDIVKIITSDDPTTFD 170
+V+ G GSQ GM +L +P + +++ D+ +R G I+ I+ ++P
Sbjct: 1670 PVTAYVFTGQGSQEQGMGMDLYATSPVAKEVWDRADKHFRENYGFSIIDIVK-NNPKELT 1728
Query: 171 D---------ILNSFVAI---VTCHQGCYVNRLL-----------------GALKK---- 197
I +++++ G + G L
Sbjct: 1729 VHFGGPRGKIIRQNYMSMTFETVNADGSIKTEKIFKEVDENSTSYTYRSPSGLLSATQFT 1788
Query: 198 --------IGLTEILRAVGI--EPDGYLGHSLGE-NGVAYADGCFDIREACLGGYARGYA 246
E +R+ G+ + GHSLGE + + I + RG
Sbjct: 1789 QPALTLMEKASFEDMRSKGLVQRDSTFAGHSLGEYSALVALADVMPIESLVSVVFYRGLT 1848
Query: 247 --SKVYKLEKP----------GLMVSVGLNYKDLTDLPPS--------VDIACHNSDDN- 285
V + E+ +S + L + + ++I +N +
Sbjct: 1849 MQVAVERDEQGRSNYAMCAVNPSRISPTFTEQALQYVVENIAEVTGWLLEIVNYNVANMQ 1908
Query: 286 TTISGAQEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKR 345
+G ++ +L + + + S ++ + ++E+ Q+ + + +
Sbjct: 1909 YVAAGDLRALDTLANVLNILKMQKIDIQALM---QSMSLEDVRAHLVEIIQECRKQTEAK 1965
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD,
xanthomonas oryzae PV. ORYZ KACC10331, transferase;
1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Length = 314
Score = 51.4 bits (124), Expect = 4e-07
Identities = 67/361 (18%), Positives = 110/361 (30%), Gaps = 92/361 (25%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKIITSDDPTTFDDILNS 175
FV+ G GSQ GM EL P + F E G+D+ + + +
Sbjct: 8 FVFPGQGSQSLGMLAELSELHPQIRETFAEASEG---AGVDLWALSQGGPEEMLNRTEYT 64
Query: 176 FVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAY----ADGCF 231
A++ + RL A + G P GHSLGE Y A G
Sbjct: 65 QPALLAAGVAVW--RLWTAQR-----------GQRPALLAGHSLGE----YTALVAAGVL 107
Query: 232 DIREACLGGYARGYASKVYKL------EKPGLMVSV-GLNYKDLTDL------PPSVDIA 278
+ + RG + G M +V G + ++ V A
Sbjct: 108 SLHDGAHLVRLRG------QFMQAAAPAGVGAMAAVLGAEDAVVLEVCAEAAGSQVVVPA 161
Query: 279 CHNSDDNTTISGAQEDVEPYLEILK---AKNIFYRVV--NSSFIAYHSRQVKPLAPKVLE 333
NS I G V+ L +L + + V S + H+ ++ A
Sbjct: 162 NFNSPGQIVIGGDAAAVDRALALLAERGVR----KAVKLAVS-VPSHTPLMRDAA----N 212
Query: 334 LFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYH----------VNNFLHTVRFT 383
+A+ + + P+ Q A H V V++T
Sbjct: 213 QLGEAMAGLSWHAPQI------------PVVQNVDARVHDGSAAIRQALVEQLYLPVQWT 260
Query: 384 EACAYIPENAI--VIEVAPHGLMQALLRRTTKD-GCVNIPLCRRQTESPANF--LLAALG 438
+ I + E P ++ L++R K + +PA++ L A
Sbjct: 261 GCVQALASQGITRIAECGPGKVLSGLIKRIDKSLDARPL-------ATPADYAGALDAWA 313
Query: 439 Q 439
Sbjct: 314 H 314
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B}
Length = 318
Score = 51.4 bits (124), Expect = 4e-07
Identities = 50/206 (24%), Positives = 71/206 (34%), Gaps = 43/206 (20%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
FV+ G GSQ GM A R+ + E LG DI K+I + N+
Sbjct: 13 FVFPGQGSQSVGMLNAFADVAVVRETLDEASDA---LGQDIGKLIADGPADELNLTTNTQ 69
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAY----ADGCFD 232
++T CY R A G +P GHSLGE Y A G
Sbjct: 70 PVMLTAAYACY--RAWQQ-----------AGGAQPSIVAGHSLGE----YTALVAAGAIA 112
Query: 233 IREACLGGYARGYASKVYKL------EKPGLMVSV-GLNYKDLTDL------PPSVDIAC 279
R+A R + G M ++ GL+ + + V+
Sbjct: 113 FRDALPLVRFRA------QAMQTAVPVGVGGMAAILGLDDDTVRAVCAEASATGVVEAVN 166
Query: 280 HNSDDNTTISGAQEDVEPYLEILKAK 305
N+ I+G + +E EI K K
Sbjct: 167 FNAPAQVVIAGTKAGIEKACEIAKEK 192
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty
acid/phospholipid metabolism, transferase; HET: MSE;
1.50A {Coxiella burnetii}
Length = 316
Score = 51.0 bits (123), Expect = 5e-07
Identities = 74/362 (20%), Positives = 110/362 (30%), Gaps = 94/362 (25%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKIITSDDPTTFDDILNS 175
FV+ G GSQ GM EL P F + L D+ ++ + L+
Sbjct: 10 FVFPGQGSQHLGMLAELGLQQPIVLETFQQASSA---LAYDLWALVQHGP----QERLDQ 62
Query: 176 FV----AIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAY----A 227
A++T + R AL G +P GHSLGE Y
Sbjct: 63 TQFTQPALLTADVAIF--RCWEALG-----------GPKPQVMAGHSLGE----YAALVC 105
Query: 228 DGCFDIREACLGGYARGYASKVYKL------EKPGLMVSV-GLNYKDLTDL------PPS 274
G EA RG + G M ++ GLN ++ +
Sbjct: 106 AGALKFEEAVKLVEKRG------QYMQEAVPVGEGAMGAIIGLNEAEIESICENAALGQV 159
Query: 275 VDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYRVV--NSSFIAYHSRQVKPLAPKVL 332
V A NS D T ISG E V+ L + K + S + H ++P A
Sbjct: 160 VQPANLNSTDQTVISGHSEAVDRALNMAKTEGA-KIAKRIPVS-VPSHCPLMQPAA---- 213
Query: 333 ELFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVN-----NFL-----HTVRF 382
+ Q + S K P+ H L VR+
Sbjct: 214 DRLAQDIAKISIDSPKV------------PVIHNVDVVDHNEANIIRGALIKQLVRPVRW 261
Query: 383 TEACAYIPENAI--VIEVAPHGLMQALLRRTTKD-GCVNIPLCRRQTESPANF--LLAAL 437
E YI E I +E P + L++R + + + + + L
Sbjct: 262 VETIKYIEEQGIKVFMECGPDNKLAGLIKRIDRQSEILPL-------TTTELILTAIKRL 314
Query: 438 GQ 439
Sbjct: 315 TH 316
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty
acid synthesis, malonyl-COA: acyl carrier protein TRAN
(MCAT), FABD; 1.46A {Staphylococcus aureus}
Length = 316
Score = 50.2 bits (121), Expect = 9e-07
Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 48/208 (23%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKIITSDDPTTFDDILNS 175
++ G G+Q GMA++L I + L DI++ + +D+ + N+
Sbjct: 14 IIFPGQGAQKVGMAQDLFNNNDQATEILTSAAKT---LDFDILETMFTDEEGKLGETENT 70
Query: 176 FVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAY----ADGCF 231
A++T L + PD +GHSLGE Y A
Sbjct: 71 QPALLTHSSALL--AALK--------------NLNPDFTMGHSLGE----YSSLVAADVL 110
Query: 232 DIREACLGGYARGYASKVYKL------EKPGLMVSV-GLNYKDLTDL-------PPSVDI 277
+A RG +L G M +V GL++ + ++ ++
Sbjct: 111 SFEDAVKIVRKRG------QLMAQAFPTGVGSMAAVLGLDFDKVDEICKSLSSDDKIIEP 164
Query: 278 ACHNSDDNTTISGAQEDVEPYLEILKAK 305
A N +SG + ++ +E K+
Sbjct: 165 ANINCPGQIVVSGHKALIDELVEKGKSL 192
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase,
lipid synthesis, mitochondrion transfer transferase;
HET: AE4; 1.55A {Homo sapiens}
Length = 339
Score = 50.3 bits (121), Expect = 1e-06
Identities = 42/212 (19%), Positives = 66/212 (31%), Gaps = 44/212 (20%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
++ G GSQ GM R L+ + R+ RV LG D++++ T D ++
Sbjct: 29 LLFPGQGSQVVGMGRGLLNYPRVRELYAAARRV---LGYDLLELSLHGPQETLDRTVHCQ 85
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAY----ADGCFD 232
AI L L+ +V G S+GE + G +
Sbjct: 86 PAIFVASLAAV--EKLHHLQP--------SVIENCVAAAGFSVGE----FAALVFAGAME 131
Query: 233 IREACLGGYARG----YASKVYKLEKPGLMVSV-GLNYKDLTDL--------------PP 273
E R AS+ P M+SV G P
Sbjct: 132 FAEGLYAVKIRAEAMQEASEA----VPSGMLSVLGQPQSKFNFACLEAREHCKSLGIENP 187
Query: 274 SVDIACHNSDDNTTISGAQEDVEPYLEILKAK 305
+++ + D ISG QE + +
Sbjct: 188 VCEVSNYLFPDCRVISGHQEALRFLQKNSSKF 219
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural
genomics center for infectious disease, S bartonella,
CAT-scratch disease; 1.60A {Bartonella henselae}
Length = 318
Score = 49.4 bits (119), Expect = 2e-06
Identities = 50/209 (23%), Positives = 75/209 (35%), Gaps = 41/209 (19%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKIITSDDPTTFDDILNS 175
F + G GSQ GM + L + +F E D L + II D+L
Sbjct: 9 FTFPGQGSQLIGMGKVLTEQFVAARMVFEEVDDA---LSEKLSDIIFEGP----ADVLTL 61
Query: 176 FV----AIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAY----A 227
A++ ++++GL V + GHSLGE Y A
Sbjct: 62 TANAQPALMAVSMAVIR-----VMEQLGLN-----VEKKVKFVAGHSLGE----YSALCA 107
Query: 228 DGCFDIREACLGGYARGYA--SKVYKLEKPGLMVSV-GLNYKDLTDL------PPSVDIA 278
G F + + RG A + V G M ++ GL+ KD+ ++ IA
Sbjct: 108 AGTFSLTDTARLLRIRGNAMQAAV--AVGEGSMAALIGLDEKDVEEICEIVAEEGLCQIA 165
Query: 279 CHNSDDNTTISGAQEDVEPYLEILKAKNI 307
N ISG + VE +E+ K
Sbjct: 166 NDNGGGQIVISGEAKAVETAVEVASQKGA 194
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase;
acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1
d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A
3hjv_A*
Length = 309
Score = 49.0 bits (118), Expect = 2e-06
Identities = 48/207 (23%), Positives = 66/207 (31%), Gaps = 44/207 (21%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKIITSDDPTTFDDILNS 175
FV+ G GSQ GM ++ P + F E LG D+ + + +
Sbjct: 6 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAA---LGYDLWALTQQGPAEELNKTWQT 62
Query: 176 FVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAY----ADGCF 231
A++T Y R+ G P GHSLGE Y G
Sbjct: 63 QPALLTASVALY--RVWQQ-----------QGGKAPAMMAGHSLGE----YSALVCAGVI 105
Query: 232 DIREACLGGYARGYASKVYKL------EKPGLMVSV-GLNYKDLTDL------PPSVDIA 278
D +A RG K E G M ++ GL+ + V
Sbjct: 106 DFADAVRLVEMRG------KFMQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPV 159
Query: 279 CHNSDDNTTISGAQEDVEPYLEILKAK 305
NS I+G +E VE KA
Sbjct: 160 NFNSPGQVVIAGHKEAVERAGAACKAA 186
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase,
structural genomics, NPPSFA; 2.10A {Thermus
thermophilus}
Length = 305
Score = 46.3 bits (111), Expect = 1e-05
Identities = 45/208 (21%), Positives = 74/208 (35%), Gaps = 50/208 (24%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKIITSDDPTTFDDILNS 175
++ G GS GM R L +P + + + L ++K++ ++ L
Sbjct: 4 ALFPGQGSHRVGMGRALYEASPAAKEVLDRAEAA---LP-GLLKLMWEGP----EEALTL 55
Query: 176 FV----AIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAY----A 227
A++ Y R A G P GHSLGE + A
Sbjct: 56 TENQQPALLAAGYAAY--RAFLE-----------AGGKPPALAAGHSLGE----WTAHVA 98
Query: 228 DGCFDIREACLGGYARGYASKVYKL------EKPGLMVSV-GLNYKDLTDL---PPSVDI 277
G ++ +A RG + G M +V L +++ V+I
Sbjct: 99 AGTLELEDALRLVRLRG------RYMQEAVPVGEGAMAAVLKLPLEEIQKALEGLEGVEI 152
Query: 278 ACHNSDDNTTISGAQEDVEPYLEILKAK 305
A N+ + T ISG ++ VE E LK +
Sbjct: 153 ANLNAPEQTVISGRRQAVEEAAERLKER 180
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 47.0 bits (111), Expect = 2e-05
Identities = 37/247 (14%), Positives = 62/247 (25%), Gaps = 62/247 (25%)
Query: 117 FVYAGMGSQWPGMA--RELM-WFAPFRQAIFE--------------CDRVYRPLGLDIVK 159
++ G G+ R+L + + + GL+I++
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 160 IITSDDPTTFDDIL----NSFVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYL 215
+ + T D L S I Y + K +G T + G
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHY--VVT--AKLLGFT--PGELRSYLKGAT 271
Query: 216 GHSLGENGVAYADGCFD-----------IREACLGGYARGYASKVYKLE----------- 253
GHS G I G A L
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 254 --KPGLMVSV-GLNYKDLTDL----------PPSVDIACHNSDDNTTISGAQEDVEPYLE 300
P M+S+ L + + D V+I+ N N +SG + +
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 301 ILKAKNI 307
L+
Sbjct: 392 TLRKAKA 398
Score = 40.0 bits (93), Expect = 0.003
Identities = 44/308 (14%), Positives = 88/308 (28%), Gaps = 66/308 (21%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIF-ECDRVYRP-LGLDIVKIITS----------- 163
FV+ G GSQ GM +L + Q ++ D ++ G I+ I+ +
Sbjct: 1664 FVFTGQGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG 1723
Query: 164 ----------------DDPTTFDDILNSFVAIVTCHQGCYVNRLLGALKK---------- 197
F I G L
Sbjct: 1724 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1783
Query: 198 --IGLTEILRAVGIEPDGYL--GHSLGE-NGVAYADGCFDIREACLGGYARGYA-----S 247
E L++ G+ P GHSLGE +A I + RG
Sbjct: 1784 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVP 1843
Query: 248 KVYKLEKPGLMVSV-------GLNYKDLTDLPPS--------VDIACHNSDDN-TTISGA 291
+ M+++ + + L + V+I +N ++ +G
Sbjct: 1844 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD 1903
Query: 292 QEDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVL-ELFQQAVQNPKKRSAKWI 350
++ +L + + + +V+ +++ E +++ P+ +
Sbjct: 1904 LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLFEIIDEASKKSAVKPRPLKLERG 1963
Query: 351 SSSIPEEE 358
+ IP
Sbjct: 1964 FACIPLVG 1971
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.085
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 6/24 (25%)
Query: 436 ALGQLHMNGLRPNIEALYEPDSFP 459
AL +L L+ LY DS P
Sbjct: 21 ALKKLQ-ASLK-----LYADDSAP 38
Score = 29.5 bits (65), Expect = 2.4
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 343 KKRSAKWISSSI----PEEEWNSP-LAQYSSAE 370
+K++ K + +S+ + ++P LA ++ E
Sbjct: 18 EKQALKKLQASLKLYADD---SAPALAIKATME 47
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 102
Score = 29.1 bits (65), Expect = 1.5
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 262 GLNYKDLTDLPPSVDIACHNSDDNTTISGAQEDVE 296
G N +T P V I +D T+ G EDV
Sbjct: 46 GQNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVS 80
>3hrq_A PKS, aflatoxin biosynthesis polyketide synthase; hot-DOG fold,
iterative type I PKS, norsolorinic acid, product
template domain; HET: PLM; 1.80A {Aspergillus
parasiticus} PDB: 3hrr_A*
Length = 357
Score = 30.9 bits (69), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 492 VTEVDLLNKEYRALFS-HQVNGVVIPPLSLFL 522
V E D+ K+ L H V+G+ + S +
Sbjct: 25 VVETDISRKDVNGLARGHLVDGIPLCTPSFYA 56
>3g5b_A Netrin receptor UNC5B; ZU5, death domain, UPA, apoptosis,
developmental protein, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; 2.00A {Rattus
norvegicus}
Length = 405
Score = 29.9 bits (66), Expect = 2.8
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 22/91 (24%)
Query: 122 MGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVT 181
G+ W +A++L + + T PT IL+ + A
Sbjct: 336 RGNDWRLLAQKLS------------------MDRYLNYFATKASPT--GVILDLWEA--R 373
Query: 182 CHQGCYVNRLLGALKKIGLTEILRAVGIEPD 212
+N L AL+++G +E+L A+ + D
Sbjct: 374 QQDDGDLNSLASALEEMGKSEMLVAMTTDGD 404
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 29.8 bits (67), Expect = 3.6
Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 28/126 (22%)
Query: 583 FLELSEDGVPVFPSMLREFIMSTNQISNLNPGCHAQIVYNG--NLMVYLD------TILK 634
F S D P L + + N + V+ G +L V L L
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV-LYLNHNYLNSLP 496
Query: 635 IKVFLELSEDGVPVFPSMLREFIMSTNQISNLNPVFLELSEDEVPVFPSMLREFIMSTKH 694
VF L+ LR +++N+++ L+ P+ L +S
Sbjct: 497 PGVFSHLTA---------LRGLSLNSNRLTVLSHND----------LPANLEILDISRNQ 537
Query: 695 ISNLNP 700
+ NP
Sbjct: 538 LLAPNP 543
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 29.2 bits (66), Expect = 5.0
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 575 DTILKIKVFLELSEDGVPVFPSMLREFIMSTNQISNLNPGCHAQIVYNGNLMVYLDTI-L 633
D +L ++ GV VFPS + E +++ +S QI + + ++D + L
Sbjct: 335 DDMLIVR--------GVNVFPSQIEEIVVALPLLSG-----QFQITLSRDG--HMDRLDL 379
Query: 634 KIKVFLELSEDGVPVFPSMLREFI 657
+++ E + + L +
Sbjct: 380 AVELRSEAAASVTDGERAALAREL 403
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana
glutinosa} PDB: 1vd1_A* 1vd3_A*
Length = 217
Score = 28.5 bits (63), Expect = 5.8
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 181 TCH---QGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADG 229
TC + Y L KK L E L+ I P ++L A +G
Sbjct: 103 TCSALGERAYFQAALDFRKKSNLLENLKNAEITPRNGEHYTLESIKKAIEEG 154
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 28.9 bits (65), Expect = 6.1
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 9/81 (11%)
Query: 595 PSMLREFIMSTNQISNLNPGCHAQIVYNGNLMVYLDTILKIKVFLELSEDGVPVFPSMLR 654
P +S N + + L + + K++V L L
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV---------LG 80
Query: 655 EFIMSTNQISNLNPVFLELSE 675
+S NQ+ +L + L
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPA 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 28.8 bits (65), Expect = 6.9
Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 25/120 (20%)
Query: 591 VPVFPSMLREFIMSTNQISNLNPGCHAQIVYNGNLMVYLDTILKIKVFLELSEDGVPVFP 650
+P P L + S N ++ L +L L + + + P
Sbjct: 86 LPELPPHLESLVASCNSLTELPELP-------QSL-----KSLLV---DNNNLKALSDLP 130
Query: 651 SMLREFIMSTNQISNLNPVF-------LELSE---DEVPVFPSMLREFIMSTKHISNLNP 700
+L +S NQ+ L + +++ ++P P L + L
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 190
Score = 28.4 bits (64), Expect = 9.9
Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 12/112 (10%)
Query: 598 LREFIMSTNQISNLNPGCHAQIVYNGNLMVYLDTILKIKVFLELSEDG---VPVFPSMLR 654
E+ + ++ P + + + + LEL+ G +P P L
Sbjct: 36 KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE-LELNNLGLSSLPELPPHLE 94
Query: 655 EFIMSTNQISNLNPVF--------LELSEDEVPVFPSMLREFIMSTKHISNL 698
+ S N ++ L + + + P +L +S + L
Sbjct: 95 SLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 28.9 bits (65), Expect = 6.9
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 194 ALKKIGLTEILRAVGIEPDGYLGHSLGE 221
A+KK GL + + + + G
Sbjct: 80 AMKKAGLLQTYYDLALPMGVNIADEKGN 107
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 28.8 bits (65), Expect = 6.9
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 13/46 (28%)
Query: 575 DTILKIKVFLELSEDGVPVFPSMLREFIMSTNQISNLNPGCHAQIV 620
D ++ ++ GV VFP+ + E ++ ++ H QIV
Sbjct: 333 DDMMIVR--------GVNVFPTQIEEQLLKQRALAP-----HYQIV 365
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
joint center for structural genomics; HET: MSE PE4;
1.55A {Parabacteroides distasonis}
Length = 292
Score = 28.6 bits (64), Expect = 7.5
Identities = 4/39 (10%), Positives = 11/39 (28%)
Query: 293 EDVEPYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKV 331
+E +++ V+ + +R P
Sbjct: 142 VPMERTAQLITDMQAEPYVMITVHDGASARFFYEKNPNF 180
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 28.7 bits (64), Expect = 9.0
Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 19/133 (14%)
Query: 584 LELSEDGVPVFPSM----LREFIMSTNQISNLNPGCHAQIVY---NGNLMVYL-DTILKI 635
L + E G+ P + ++ N +++L P ++ +GN + L +
Sbjct: 45 LNVGESGLTTLPDCLPAHITTLVIPDNNLTSL-PALPPELRTLEVSGNQLTSLPVLPPGL 103
Query: 636 K--VFLELSEDGVPVFPSMLREFIMSTNQISNLNPVFLELSE--------DEVPVFPSML 685
+P PS L + + NQ+++L + L E +P PS L
Sbjct: 104 LELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSEL 163
Query: 686 REFIMSTKHISNL 698
+ +++L
Sbjct: 164 CKLWAYNNQLTSL 176
Score = 28.7 bits (64), Expect = 9.0
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 23/116 (19%)
Query: 591 VPVFPSMLREFIMSTNQISNLNPGCHAQIVYNGNLMVYLDTILKIKVFLELSEDGVPVFP 650
+P+ PS L+E +S NQ+++L L L +P P
Sbjct: 176 LPMLPSGLQELSVSDNQLASLPTLP-------SEL-----YKLWA---YNNRLTSLPALP 220
Query: 651 SMLREFIMSTNQISNLNPVFLELSE--------DEVPVFPSMLREFIMSTKHISNL 698
S L+E I+S N++++L + EL E +P+ PS L + ++ L
Sbjct: 221 SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRL 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.428
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,030,843
Number of extensions: 685187
Number of successful extensions: 1949
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1749
Number of HSP's successfully gapped: 109
Length of query: 700
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 600
Effective length of database: 3,909,693
Effective search space: 2345815800
Effective search space used: 2345815800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.1 bits)