RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8296
(700 letters)
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Streptomyces
coelicolor A3(2) [TaxId: 100226]}
Length = 253
Score = 89.2 bits (220), Expect = 2e-20
Identities = 44/300 (14%), Positives = 73/300 (24%), Gaps = 76/300 (25%)
Query: 117 FVYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSF 176
V G G+Q PG + + + +GLD+ T D D +
Sbjct: 5 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDA---IGLDLAHFGTKADADEIRDTSVAQ 61
Query: 177 VAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIREA 236
+V AL G P GHS+GE
Sbjct: 62 PLLVAAGILSAA-----ALGTQTSVADATGPGFTPGAVAGHSVGE--------------- 101
Query: 237 CLGGYARGYASKVYKLEKPGLMVSVGLNYKDLTDLPPSVDIACHNSDDNTTISGAQEDVE 296
+ V + T++GA
Sbjct: 102 ----ITAAVFAGVLDDTAALSL--------------VRRRGLAMAEAAAVTVAGA----- 138
Query: 297 PYLEILKAKNIFYRVVNSSFIAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKWISSSIPE 356
+H+R + P K+ E + P ++S+
Sbjct: 139 ----------------------FHTRHMAPAVDKLAEAAKA--LTPADPKVTYVSNKDGR 174
Query: 357 EEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPENAI--VIEVAPHGLMQALLRRTTKD 414
+ + V + VR+ E + +IEV P G + L +R
Sbjct: 175 AVAS----GTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPG 230
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Escherichia coli
[TaxId: 562]}
Length = 235
Score = 62.9 bits (152), Expect = 1e-11
Identities = 32/153 (20%), Positives = 48/153 (31%), Gaps = 17/153 (11%)
Query: 117 FVYAGMGSQWPGMARELM-WFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNS 175
FV+ G GSQ GM ++ + + E LG D+ + + +
Sbjct: 4 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAA---LGYDLWALTQQGPAEELNKTWQT 60
Query: 176 FVAIVTCHQGCYVNRLLGALKKIGLTEILRAVGIEPDGYLGHSLGENGVAYADGCFDIRE 235
A++T Y R+ + G P GHSLGE G D +
Sbjct: 61 QPALLTASVALY--RVW-----------QQQGGKAPAMMAGHSLGEYSALVCAGVIDFAD 107
Query: 236 ACLGGYARGYASKVYKLEKPGLMVSVGLNYKDL 268
A RG + E P + L
Sbjct: 108 AVRLVEMRGKFMQEAVPEVPSHCALMKPAADKL 140
Score = 38.7 bits (89), Expect = 0.001
Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 316 FIAYHSRQVKPLAPKVLELFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNN 375
+ H +KP A K+ + + +++ + E N + V
Sbjct: 125 EVPSHCALMKPAADKLAVELAKI--TFNAPTVPVVNNVDVKCETNGDA----IRDALVRQ 178
Query: 376 FLHTVRFTEACAYIPENAI--VIEVAPHGLMQALLRRTTKD 414
+ V++T++ Y+ + + EV P ++ L +R
Sbjct: 179 LYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIVDT 219
>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of
malonyl-CoA ACP transacylase {Streptomyces coelicolor
A3(2) [TaxId: 100226]}
Length = 62
Score = 40.5 bits (95), Expect = 2e-05
Identities = 7/56 (12%), Positives = 14/56 (25%), Gaps = 3/56 (5%)
Query: 258 MVSV-GLNYKDLTDL--PPSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNIFYR 310
M ++ G + + + A N +G E + E
Sbjct: 4 MSALLGGDPEVSVAHLERLGLTPANVNGAGQIVAAGTMEQLAALNEDKPEGVRKVV 59
>d1mlaa2 d.58.23.1 (A:128-197) Probable ACP-binding domain of
malonyl-CoA ACP transacylase {Escherichia coli [TaxId:
562]}
Length = 70
Score = 34.1 bits (78), Expect = 0.005
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 256 GLMVSV-GLNYKDLTDL------PPSVDIACHNSDDNTTISGAQEDVEPYLEILKAKNI 307
G M ++ GL+ + V NS I+G +E VE KA
Sbjct: 3 GAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACKAAGA 61
>d1fvia1 b.40.4.6 (A:190-293) ATP-dependent DNA ligase {Chlorella
virus PBCV-1 [TaxId: 10506]}
Length = 104
Score = 28.3 bits (63), Expect = 1.1
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 573 YLDTILKIKVFLELSEDGVPVFPSMLR 599
Y+ ++K K + E+ P FP +
Sbjct: 77 YIGKMVKFK-YFEMGSKDCPRFPVFIG 102
Score = 28.3 bits (63), Expect = 1.1
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 628 YLDTILKIKVFLELSEDGVPVFPSMLR 654
Y+ ++K K + E+ P FP +
Sbjct: 77 YIGKMVKFK-YFEMGSKDCPRFPVFIG 102
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite
reductase subunit alpha, DsrA {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 185
Score = 29.3 bits (65), Expect = 1.3
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 157 IVKIITSDDPTTFDDILNSFVAIVTCHQ--GCYVNRLLGALKKIGLTEILRAVGIEPD 212
V + + P +D+I AI G + R+ + + G+ E L+ +G E D
Sbjct: 95 AVPFVEVEKP--YDEIKEILEAIWDWWDEEGKFRERIGELIWRKGMREFLKVIGREAD 150
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.0 bits (61), Expect = 2.8
Identities = 9/89 (10%), Positives = 23/89 (25%)
Query: 86 FKFTLWFRTILNFNPFCPISQLTQPIKRPVWFVYAGMGSQWPGMARELMWFAPFRQAIFE 145
+R I ++ + ++ P R
Sbjct: 86 PILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL 145
Query: 146 CDRVYRPLGLDIVKIITSDDPTTFDDILN 174
+ R G ++++ + +DIL+
Sbjct: 146 VKEIRRLPGAVLIELTPENRDVILEDILS 174
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 27.5 bits (60), Expect = 3.5
Identities = 11/108 (10%), Positives = 26/108 (24%), Gaps = 4/108 (3%)
Query: 61 EPINGLFYSGYTLLPTPTKAV-HGSLFKFTLWFRTILNFNPFCPISQLTQPIKRPVWF-- 117
+ + G + + P G F + +NP
Sbjct: 37 QIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTG 96
Query: 118 -VYAGMGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSD 164
+ + A + QA+ P ++ K++ +
Sbjct: 97 AICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIEN 144
>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite
reductase subunit alpha, DsrA {Desulfovibrio vulgaris
[TaxId: 881]}
Length = 189
Score = 27.3 bits (60), Expect = 4.5
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 152 PLGLDIVKIITSDDPTTFDDILNSFVAIVTCH--QGCYVNRLLGALKKIGLTEILRAVGI 209
+G +V + +++P FD+I I +G RL +K++ ++L I
Sbjct: 92 QMGSLLVPFVAAEEP--FDEIKEVVEKIWDWWMEEGKNRERLGETMKRLSFQKLLEVTEI 149
Query: 210 EPD 212
P
Sbjct: 150 APV 152
>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 27.2 bits (59), Expect = 6.0
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 2/113 (1%)
Query: 334 LFQQAVQNPKKRSAKWISSSIPEEEWNSPLAQYSSAEYHVNNFLHTVRFTEACAYIPENA 393
+ Q +R ++S+ E A YS+++ + + A I
Sbjct: 131 MGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMT 190
Query: 394 IVIEVAPHGLMQALLRRTTKDGCVNIPLCRR--QTESPANFLLAALGQLHMNG 444
I + L+ +L + +P R A+ + A + +NG
Sbjct: 191 IAPGLFGTPLLTSLPEKVCNFLASQVPFPSRLGDPAEYAHLVQAIIENPFLNG 243
>d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus
vulgaris [TaxId: 585]}
Length = 384
Score = 27.3 bits (60), Expect = 6.6
Identities = 13/107 (12%), Positives = 31/107 (28%), Gaps = 17/107 (15%)
Query: 566 YNGNLMVYLDTILKIKVFLELSEDGVPVFPSMLREFIMSTNQ-ISNLNPGC--------- 615
+ + + Y +T+ + + L L E +++ F ++ + PG
Sbjct: 204 ADSSDLDYFNTLSRQHLALLLLEPDDQKRINLVNTFSHYITGALTQVPPGGKDGLRPDGT 263
Query: 616 --HAQIVYNGNLMVYLDTILKIKVFL-----ELSEDGVPVFPSMLRE 655
+ Y G ++ L + E G +
Sbjct: 264 AWRHEGNYPGYSFPAFKNASQLIYLLRDTPFSVGESGWNNLKKAMVS 310
>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 116
Score = 25.8 bits (57), Expect = 8.2
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 589 DGVPVF-------------PSMLREFIMSTNQISNLNPGCHAQIV--YNGNLMV 627
DGVPV P L F ++T+Q S L + I+ YN +V
Sbjct: 26 DGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVV 79
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 26.6 bits (58), Expect = 8.4
Identities = 9/85 (10%), Positives = 23/85 (27%), Gaps = 2/85 (2%)
Query: 82 HGSLFKFTLWFRTILNFNPFCP--ISQLTQPIKRPVWFVYAGMGSQWPGMARELMWFAPF 139
F F+ +P + + P V + + +
Sbjct: 46 KSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYG 105
Query: 140 RQAIFECDRVYRPLGLDIVKIITSD 164
Q +F PL + +++ ++
Sbjct: 106 LQYLFLEPNPEDPLNKEAAEVLQNN 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.428
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,721,393
Number of extensions: 133920
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 19
Length of query: 700
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 608
Effective length of database: 1,144,436
Effective search space: 695817088
Effective search space used: 695817088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)