Query psy8300
Match_columns 256
No_of_seqs 191 out of 1186
Neff 4.0
Searched_HMMs 46136
Date Sat Aug 17 00:02:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2881|consensus 100.0 9.5E-58 2.1E-62 415.7 17.5 207 24-256 59-271 (294)
2 COG2119 Predicted membrane pro 100.0 2.6E-45 5.6E-50 319.9 15.5 163 31-256 1-165 (190)
3 PF01169 UPF0016: Uncharacteri 99.9 4.6E-22 1E-26 152.0 7.4 75 34-134 1-78 (78)
4 COG2119 Predicted membrane pro 99.8 5.4E-20 1.2E-24 161.3 9.6 103 13-141 81-185 (190)
5 PF01169 UPF0016: Uncharacteri 99.8 7.1E-21 1.5E-25 145.5 3.2 63 194-256 1-65 (78)
6 KOG2881|consensus 99.6 1.3E-15 2.8E-20 140.2 3.1 84 32-141 207-291 (294)
7 COG4280 Predicted membrane pro 97.3 0.001 2.2E-08 60.5 7.9 145 61-255 31-178 (236)
8 TIGR02840 spore_YtaF putative 97.0 0.016 3.4E-07 51.5 12.7 40 105-144 45-85 (206)
9 PRK11469 hypothetical protein; 96.3 0.039 8.4E-07 48.5 10.1 38 105-143 52-90 (188)
10 PF03596 Cad: Cadmium resistan 95.8 0.031 6.8E-07 49.7 6.9 52 63-140 25-76 (191)
11 COG4300 CadD Predicted permeas 94.8 0.17 3.6E-06 45.7 8.4 74 42-141 12-88 (205)
12 TIGR03718 R_switched_Alx integ 94.7 0.37 8.1E-06 45.8 10.8 65 47-140 77-147 (302)
13 PF03741 TerC: Integral membra 94.5 0.94 2E-05 39.7 12.2 143 47-251 12-162 (183)
14 COG1971 Predicted membrane pro 93.4 0.048 1E-06 48.8 2.1 40 105-144 48-91 (190)
15 TIGR00145 FTR1 family protein. 93.1 1.4 3.1E-05 41.3 11.4 53 63-141 38-98 (283)
16 PF03239 FTR1: Iron permease F 92.8 1.2 2.7E-05 41.5 10.6 149 63-255 35-196 (306)
17 PF01810 LysE: LysE type trans 89.7 11 0.00024 31.6 13.1 64 52-142 12-82 (191)
18 TIGR00779 cad cadmium resistan 89.6 0.6 1.3E-05 41.9 4.9 55 60-140 21-75 (193)
19 TIGR03716 R_switched_YkoY inte 89.1 5.2 0.00011 36.3 10.6 133 47-250 9-151 (215)
20 PF01914 MarC: MarC family int 84.9 15 0.00033 32.5 11.0 37 105-141 52-91 (203)
21 COG0861 TerC Membrane protein 80.4 23 0.0005 32.9 10.7 163 36-251 18-190 (254)
22 TIGR03717 R_switched_YjbE inte 75.9 13 0.00027 32.6 7.2 63 47-140 14-81 (176)
23 PF01810 LysE: LysE type trans 71.3 5.4 0.00012 33.5 3.8 36 106-141 153-191 (191)
24 COG0395 UgpE ABC-type sugar tr 67.3 37 0.00079 31.8 8.6 111 117-249 140-272 (281)
25 PF04474 DUF554: Protein of un 65.5 78 0.0017 29.2 10.2 87 26-139 94-203 (226)
26 PRK15071 lipopolysaccharide AB 63.1 69 0.0015 29.8 9.6 27 114-140 328-354 (356)
27 PRK10995 inner membrane protei 57.1 17 0.00037 32.5 4.4 37 105-141 56-95 (221)
28 COG1280 RhtB Putative threonin 55.4 23 0.0005 31.1 4.8 22 119-140 185-206 (208)
29 TIGR00948 2a75 L-lysine export 54.2 70 0.0015 26.9 7.4 60 55-141 13-77 (177)
30 PF03739 YjgP_YjgQ: Predicted 53.6 58 0.0013 29.8 7.3 25 115-139 329-353 (354)
31 PRK11469 hypothetical protein; 52.9 26 0.00056 30.9 4.7 24 119-142 163-186 (188)
32 COG1280 RhtB Putative threonin 50.9 83 0.0018 27.7 7.6 80 33-141 8-94 (208)
33 PF06166 DUF979: Protein of un 49.6 1.4E+02 0.0031 28.9 9.4 98 114-250 45-143 (308)
34 PRK10739 putative antibiotic t 49.4 1.2E+02 0.0026 27.0 8.4 36 105-140 52-90 (197)
35 PRK10229 threonine efflux syst 48.4 1.6E+02 0.0036 25.2 8.9 65 50-141 22-93 (206)
36 PRK15120 lipopolysaccharide AB 47.2 76 0.0016 29.8 7.2 26 114-139 322-347 (366)
37 TIGR00704 NaPi_cotrn_rel Na/Pi 46.8 38 0.00083 32.2 5.1 26 117-142 125-150 (307)
38 PRK11111 hypothetical protein; 46.6 22 0.00048 32.0 3.4 36 105-140 58-96 (214)
39 PF07332 DUF1469: Protein of u 45.8 90 0.002 24.6 6.5 25 117-141 69-93 (121)
40 PF08285 DPM3: Dolichol-phosph 45.7 1E+02 0.0022 24.5 6.7 46 120-165 35-82 (91)
41 TIGR00949 2A76 The Resistance 44.3 69 0.0015 26.8 5.8 61 54-141 9-76 (185)
42 cd02434 Nodulin-21_like_3 Nodu 42.4 48 0.001 29.9 4.9 39 105-143 17-55 (225)
43 PF11239 DUF3040: Protein of u 42.4 49 0.0011 25.2 4.3 24 147-170 5-28 (82)
44 PRK10621 hypothetical protein; 42.2 47 0.001 29.9 4.8 38 105-142 217-255 (266)
45 PF02659 DUF204: Domain of unk 41.6 82 0.0018 22.6 5.2 29 105-134 38-67 (67)
46 PF01925 TauE: Sulfite exporte 41.2 44 0.00094 28.8 4.3 36 105-140 74-110 (240)
47 COG0730 Predicted permeases [G 40.7 1.7E+02 0.0037 25.9 8.1 37 105-141 84-121 (258)
48 COG0795 Predicted permeases [G 40.5 1.2E+02 0.0026 28.4 7.3 75 32-140 279-360 (364)
49 PRK10019 nickel/cobalt efflux 40.0 84 0.0018 29.7 6.2 26 119-144 87-112 (279)
50 COG1283 NptA Na+/phosphate sym 39.0 1.5E+02 0.0032 30.8 8.2 48 95-142 106-154 (533)
51 PRK10229 threonine efflux syst 38.5 51 0.0011 28.3 4.2 21 120-140 185-205 (206)
52 PF02683 DsbD: Cytochrome C bi 37.0 1.5E+02 0.0033 25.7 7.0 38 101-138 168-210 (211)
53 COG0730 Predicted permeases [G 36.6 75 0.0016 28.2 5.2 38 105-142 217-255 (258)
54 PF01925 TauE: Sulfite exporte 36.4 1.3E+02 0.0029 25.7 6.6 33 105-137 207-240 (240)
55 PF11368 DUF3169: Protein of u 34.8 1.9E+02 0.004 26.1 7.4 13 236-248 140-152 (248)
56 PF13386 DsbD_2: Cytochrome C 32.4 73 0.0016 27.4 4.3 34 102-136 166-199 (199)
57 COG0861 TerC Membrane protein 32.2 1.5E+02 0.0034 27.6 6.6 78 32-142 131-213 (254)
58 PF01988 VIT1: VIT family; In 32.2 90 0.002 27.5 4.9 38 105-142 16-53 (213)
59 PRK10921 twin-arginine protein 32.0 72 0.0016 29.5 4.4 16 63-78 193-208 (258)
60 PRK10958 leucine export protei 31.9 2.2E+02 0.0047 24.9 7.2 37 106-142 59-99 (212)
61 KOG2325|consensus 31.4 4.9E+02 0.011 26.7 10.4 40 191-230 265-305 (488)
62 TIGR03716 R_switched_YkoY inte 30.9 1.5E+02 0.0033 27.0 6.2 79 33-142 94-175 (215)
63 PF03741 TerC: Integral membra 30.2 1.1E+02 0.0025 26.8 5.1 75 33-140 104-183 (183)
64 cd02436 Nodulin-21 Nodulin-21. 30.2 3.6E+02 0.0079 23.7 8.1 40 105-144 17-56 (152)
65 PRK11715 inner membrane protei 30.0 51 0.0011 33.1 3.2 87 33-136 310-400 (436)
66 COG1971 Predicted membrane pro 29.7 1.1E+02 0.0025 27.6 5.1 36 106-142 152-188 (190)
67 COG2215 ABC-type uncharacteriz 29.6 1.9E+02 0.0041 28.1 6.8 29 115-143 126-154 (303)
68 TIGR00427 membrane protein, Ma 29.0 81 0.0018 28.0 4.1 36 105-140 55-93 (201)
69 PRK10621 hypothetical protein; 28.6 1.1E+02 0.0025 27.5 5.0 36 105-140 88-124 (266)
70 cd02432 Nodulin-21_like_1 Nodu 28.1 1.2E+02 0.0026 27.4 5.0 38 105-142 22-59 (218)
71 PF11118 DUF2627: Protein of u 27.3 1.1E+02 0.0024 24.2 4.0 32 108-139 27-58 (77)
72 PRK13751 putative mercuric tra 27.2 3.8E+02 0.0081 22.5 7.7 31 110-140 41-71 (116)
73 PF03239 FTR1: Iron permease F 26.8 5.3E+02 0.012 24.1 9.4 85 29-141 131-217 (306)
74 PF12650 DUF3784: Domain of un 26.7 40 0.00087 26.1 1.5 22 125-146 2-30 (97)
75 COG1283 NptA Na+/phosphate sym 26.3 3.2E+02 0.007 28.4 8.2 94 120-242 6-104 (533)
76 PF14007 YtpI: YtpI-like prote 26.3 73 0.0016 25.4 2.9 26 118-143 54-79 (89)
77 PRK10520 rhtB homoserine/homos 25.8 89 0.0019 26.8 3.7 21 120-140 183-203 (205)
78 PRK10520 rhtB homoserine/homos 25.7 3.3E+02 0.0072 23.3 7.2 67 47-140 20-93 (205)
79 TIGR00792 gph sugar (Glycoside 25.2 2.6E+02 0.0055 25.6 6.7 36 123-162 401-436 (437)
80 PRK08633 2-acyl-glycerophospho 24.7 2E+02 0.0043 30.3 6.6 24 33-56 10-33 (1146)
81 PF12270 Cyt_c_ox_IV: Cytochro 24.4 1.3E+02 0.0029 25.8 4.4 19 221-239 107-125 (137)
82 TIGR00893 2A0114 d-galactonate 24.3 4.6E+02 0.01 22.6 10.1 23 113-135 141-163 (399)
83 PF06724 DUF1206: Domain of Un 23.7 1.6E+02 0.0034 21.6 4.2 23 121-143 2-24 (73)
84 KOG2736|consensus 23.6 2.1E+02 0.0046 28.7 6.1 49 28-78 64-115 (406)
85 PF08507 COPI_assoc: COPI asso 23.3 71 0.0015 26.3 2.5 23 120-142 85-107 (136)
86 PRK00293 dipZ thiol:disulfide 22.7 1.5E+02 0.0032 30.3 5.1 22 117-138 241-262 (571)
87 PRK01637 hypothetical protein; 22.3 1E+02 0.0022 28.3 3.5 15 64-78 202-216 (286)
88 PF02411 MerT: MerT mercuric t 21.8 4.6E+02 0.01 21.7 7.2 27 114-140 45-71 (116)
89 PF07857 DUF1632: CEO family ( 21.6 2.9E+02 0.0063 25.8 6.4 25 227-252 223-247 (254)
90 PF06553 BNIP3: BNIP3; InterP 21.2 84 0.0018 28.6 2.7 23 228-250 169-191 (197)
91 PRK10323 cysteine/O-acetylseri 21.1 1.2E+02 0.0026 26.1 3.6 88 49-139 105-195 (195)
92 PF04246 RseC_MucC: Positive r 21.1 93 0.002 25.3 2.7 21 120-140 96-116 (135)
93 TIGR00782 ccoP cytochrome c ox 20.7 2.2E+02 0.0048 26.2 5.4 30 113-142 22-51 (285)
94 TIGR00267 conserved hypothetic 20.6 3.1E+02 0.0068 23.6 6.0 37 105-142 14-50 (169)
95 PRK09304 arginine exporter pro 20.6 4.7E+02 0.01 22.6 7.2 36 106-141 52-91 (207)
96 PRK11195 lysophospholipid tran 20.3 4.6E+02 0.0099 24.3 7.5 23 35-57 6-28 (393)
97 TIGR03718 R_switched_Alx integ 20.2 2.6E+02 0.0056 26.9 5.8 75 39-141 193-270 (302)
No 1
>KOG2881|consensus
Probab=100.00 E-value=9.5e-58 Score=415.74 Aligned_cols=207 Identities=59% Similarity=0.980 Sum_probs=185.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHccCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCch
Q psy8300 24 PRGDLGFIHAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQV 103 (256)
Q Consensus 24 ~~~~~~~~~~f~~af~~iflaElGDKTq~~a~~LA~r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (256)
+..+.+++++|..++++||++|+||||||+|++|||||+|..||.|+..||++||
T Consensus 59 ~~~~~s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMT------------------------- 113 (294)
T KOG2881|consen 59 SSTASSFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMT------------------------- 113 (294)
T ss_pred ccchHHHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHH-------------------------
Confidence 3345678999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhh-ccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhHHHHHhhhhcchhhhhhh--hccccccCc
Q psy8300 104 LVLSGAFDMAA-NIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEA--LTGDVESGK 180 (256)
Q Consensus 104 ~~lsv~~G~~~-~~lp~~~~~~~a~~lFi~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~~~~~~~~~~--~~~~~e~g~ 180 (256)
+||+++||++ +.+|++++++++++||++||+|||+|+++|+|++++||.||+|+|++++|++.+.-+ .+++.+++.
T Consensus 114 -iLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
T KOG2881|consen 114 -ILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETGS 192 (294)
T ss_pred -HHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccch
Confidence 9999999987 999999999999999999999999999999999999999999999999988876322 233333332
Q ss_pred c--chh-hHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhccCceEEeehHHHHHHHHHHHHHHHhHHhhhccCCCC
Q psy8300 181 S--YQA-QTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT 256 (256)
Q Consensus 181 ~--~~~-~~~~~~~~~f~taF~liFLAE~GDKTQLATiaLAa~~~p~~V~iGa~lGl~l~t~laVl~G~~l~~~Ip~r~ 256 (256)
. +.| .....+.|+|+++|.++|++||||||||+||+|||+.||++|++|+++||.+||++||++|+++++||++|+
T Consensus 193 ~~~~~r~~~t~ffspifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rt 271 (294)
T KOG2881|consen 193 QKSKFRRKLTLFFSPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRT 271 (294)
T ss_pred hhhhhhHHHHHhccHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEE
Confidence 1 122 233456899999999999999999999999999999999999999999999999999999999999999984
No 2
>COG2119 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.6e-45 Score=319.94 Aligned_cols=163 Identities=36% Similarity=0.493 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHccCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhH
Q psy8300 31 IHAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAF 110 (256)
Q Consensus 31 ~~~f~~af~~iflaElGDKTq~~a~~LA~r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~ 110 (256)
+++|..+.++|++||+|||||+++++||+||+|++||.|+..|++.|| .+++++
T Consensus 1 l~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~--------------------------~la~~v 54 (190)
T COG2119 1 LEALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMH--------------------------ALAVLV 54 (190)
T ss_pred ChhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHH--------------------------HHHHHH
Confidence 367899999999999999999999999999999999999999999999 999999
Q ss_pred h-hhhccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhHHHHHhhhhcchhhhhhhhccccccCccchhhHHHH
Q psy8300 111 D-MAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISL 189 (256)
Q Consensus 111 G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~~~ 189 (256)
| ++...+|+++.+++.+++|++||+|+++|+.+ ++|+. ...++
T Consensus 55 G~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~------~~~e~------------------------~~~~~------ 98 (190)
T COG2119 55 GHAAASLLPERPLAWASGVLFLAFAVWMLIEDKE------DDEEA------------------------QAASP------ 98 (190)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHHHHHhccccc------ccccc------------------------ccccc------
Confidence 9 67899999999999999999999999997421 11100 00011
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHhhccC-ceEEeehHHHHHHHHHHHHHHHhHHhhhccCCCC
Q psy8300 190 LSRVVIQAFTLTFLAEWGDRSQLTTIILAARED-VYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT 256 (256)
Q Consensus 190 ~~~~f~taF~liFLAE~GDKTQLATiaLAa~~~-p~~V~iGa~lGl~l~t~laVl~G~~l~~~Ip~r~ 256 (256)
+.+|.++|+++|++|||||||++|++||++++ |+.|++|+++||++|++++|++|+++++|+|+|+
T Consensus 99 -~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~ 165 (190)
T COG2119 99 -RGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERL 165 (190)
T ss_pred -ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHH
Confidence 36899999999999999999999999999975 7999999999999999999999999999999974
No 3
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.86 E-value=4.6e-22 Score=151.99 Aligned_cols=75 Identities=36% Similarity=0.543 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHccC--CCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh
Q psy8300 34 FVAALSVIVVSELGDKTFFIAAIMAMRH--PRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD 111 (256)
Q Consensus 34 f~~af~~iflaElGDKTq~~a~~LA~r~--~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G 111 (256)
|+++|.++|++|+|||||++++.||+|| +++.|++|+.+|++++| ++++++|
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~--------------------------~lav~~G 54 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALAT--------------------------GLAVLLG 54 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH--------------------------HHHHHHH
Confidence 6789999999999999999999999999 56789999999999999 9999999
Q ss_pred -hhhccCCHHHHHHHHHHHHHHHH
Q psy8300 112 -MAANIIPRIWTYYISTVLFIIFG 134 (256)
Q Consensus 112 -~~~~~lp~~~~~~~a~~lFi~fG 134 (256)
++.+++|+++++++++++|+.||
T Consensus 55 ~~l~~~ip~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 55 SWLASRIPERYIKWVAGALFLLFG 78 (78)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHC
Confidence 78999999999999999999987
No 4
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.81 E-value=5.4e-20 Score=161.30 Aligned_cols=103 Identities=24% Similarity=0.358 Sum_probs=90.6
Q ss_pred ccccCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHccCCC-cchHHHHHHHHHHhchhccchhhhhhhh
Q psy8300 13 SLLQHHSSTESPRGDLGFIHAFVAALSVIVVSELGDKTFFIAAIMAMRHPR-VTVFIGAIAALALMTKFFHHEMLLDKVY 91 (256)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~f~~af~~iflaElGDKTq~~a~~LA~r~~~-~~Vf~G~~~al~~~t~~~~~~~~~~~~~ 91 (256)
..+.|+|..+++....+....|+++|+++|++|||||||++|+.||++|+. +.||+|+.+|+.+++
T Consensus 81 ~~l~edk~~~~e~~~~~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s------------- 147 (190)
T COG2119 81 WMLIEDKEDDEEAQAASPRGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILAS------------- 147 (190)
T ss_pred HHhcccccccccccccccccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHH-------------
Confidence 345666665544333344569999999999999999999999999999987 789999999999999
Q ss_pred hhccccccCCchhhhhhhHh-hhhccCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8300 92 VQCTFYTYSPQVLVLSGAFD-MAANIIPRIWTYYISTVLFIIFGLKMLREG 141 (256)
Q Consensus 92 ~~~~~~~~~~~~~~lsv~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~ 141 (256)
+++|++| ++++++|.+.++.+++++|++||+..+|+.
T Consensus 148 -------------~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~ 185 (190)
T COG2119 148 -------------VLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQV 185 (190)
T ss_pred -------------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 899999999999999999999999999975
No 5
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.81 E-value=7.1e-21 Score=145.47 Aligned_cols=63 Identities=48% Similarity=0.686 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHhhcc--CceEEeehHHHHHHHHHHHHHHHhHHhhhccCCCC
Q psy8300 194 VIQAFTLTFLAEWGDRSQLTTIILAARE--DVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT 256 (256)
Q Consensus 194 f~taF~liFLAE~GDKTQLATiaLAa~~--~p~~V~iGa~lGl~l~t~laVl~G~~l~~~Ip~r~ 256 (256)
|+++|.++|++|||||||++|++||+|| +|+.|++|+++|++++++++|++|+++.+++|+|+
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~ 65 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERY 65 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 5789999999999999999999999999 89999999999999999999999999999999873
No 6
>KOG2881|consensus
Probab=99.56 E-value=1.3e-15 Score=140.16 Aligned_cols=84 Identities=32% Similarity=0.390 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHccCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh
Q psy8300 32 HAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD 111 (256)
Q Consensus 32 ~~f~~af~~iflaElGDKTq~~a~~LA~r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G 111 (256)
..|+.+|.++|++|||||+|++++.||++-+++.|++|+++|+++|| .++|+.|
T Consensus 207 pifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT--------------------------~lAVigG 260 (294)
T KOG2881|consen 207 PIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCT--------------------------GLAVIGG 260 (294)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHH--------------------------HHHHhhh
Confidence 48999999999999999999999999999999999999999999999 9999999
Q ss_pred -hhhccCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8300 112 -MAANIIPRIWTYYISTVLFIIFGLKMLREG 141 (256)
Q Consensus 112 -~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~ 141 (256)
+++++|+.+.+.++.+++|++||+..++.+
T Consensus 261 k~lAskIS~rtVt~~ggi~Fi~Fgl~~i~~~ 291 (294)
T KOG2881|consen 261 KYLASKISVRTVTLIGGILFIIFGLVYIFQG 291 (294)
T ss_pred HHHhhhheeEEEEEecchhHHHHHHHHHhcC
Confidence 899999999999999999999999999864
No 7
>COG4280 Predicted membrane protein [Function unknown]
Probab=97.29 E-value=0.001 Score=60.48 Aligned_cols=145 Identities=23% Similarity=0.315 Sum_probs=88.8
Q ss_pred CCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhccCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300 61 HPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 61 ~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
++...-++|+.+++++.- .++.++|..-..+|-.+.++++|++.++||-.-+|.
T Consensus 31 ~~wr~al~ga~lglalvl--------------------------~l~lvlGk~L~lvPln~lqiv~gvLLllFG~rw~Rs 84 (236)
T COG4280 31 YKWRLALIGAVLGLALVL--------------------------ILTLVLGKLLYLVPLNYLQIVSGVLLLLFGYRWIRS 84 (236)
T ss_pred ccccHHHHHHHHHHHHHH--------------------------HHHHHHccceeeeechHHHHHHHHHHHHHHHHHHHH
Confidence 344668999999999987 899999988899999999999999999999998887
Q ss_pred hccCCCC--CChhhhHHHHHhhhhcchhhhhhhhccccccCccchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHh
Q psy8300 141 GYKMSPN--EGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILA 218 (256)
Q Consensus 141 ~~~~~~d--~~~~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~f~taF~liFLAE~GDKTQLATiaLA 218 (256)
+.+.... .+-+|++ .|+.+..|++ |+|.++ -.+.++|-...+ | |=.--+..+++.
T Consensus 85 avrr~ag~rkg~~ee~-leE~~~ldq~-----------e~g~~~---------la~l~~fk~v~L-e-glEv~~iVialg 141 (236)
T COG4280 85 AVRRFAGIRKGGGEEK-LEEGIVLDQE-----------EEGFSK---------LALLVVFKVVAL-E-GLEVSLIVIALG 141 (236)
T ss_pred HHHHHhchhccCchhh-Hhhhhhcccc-----------cccchh---------hhHHHHhHHHHH-h-hheeeeeeeeec
Confidence 6533221 1111211 2333333322 222211 223333322111 1 222234556666
Q ss_pred hcc-CceEEeehHHHHHHHHHHHHHHHhHHhhhccCCC
Q psy8300 219 ARE-DVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVR 255 (256)
Q Consensus 219 a~~-~p~~V~iGa~lGl~l~t~laVl~G~~l~~~Ip~r 255 (256)
+.+ ++.....|+..+..+.-.++.++-+.++ |+|++
T Consensus 142 aa~sqwleAi~gagfA~vlvlvl~~~lh~pla-rvpe~ 178 (236)
T COG4280 142 AASSQWLEAIMGAGFASVLVLVLTAILHSPLA-RVPEP 178 (236)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHh-hCCch
Confidence 654 4666667777777777777776666654 36653
No 8
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=97.02 E-value=0.016 Score=51.46 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=36.8
Q ss_pred hhhhhHh-hhhccCCHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8300 105 VLSGAFD-MAANIIPRIWTYYISTVLFIIFGLKMLREGYKM 144 (256)
Q Consensus 105 ~lsv~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~~~ 144 (256)
.++..+| ++.+++|+++-+++++++++++|+||++|+++.
T Consensus 45 ~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~~ 85 (206)
T TIGR02840 45 FISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFRP 85 (206)
T ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999 788999999999999999999999999999853
No 9
>PRK11469 hypothetical protein; Provisional
Probab=96.35 E-value=0.039 Score=48.54 Aligned_cols=38 Identities=26% Similarity=0.662 Sum_probs=32.6
Q ss_pred hhhhhHh-hhhccCCHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8300 105 VLSGAFD-MAANIIPRIWTYYISTVLFIIFGLKMLREGYK 143 (256)
Q Consensus 105 ~lsv~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~~ 143 (256)
.++-.+| ++.+++|+ +-+|++..++++.|+||++|+++
T Consensus 52 ~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~~ 90 (188)
T PRK11469 52 LIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGFR 90 (188)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888 56777666 77999999999999999999985
No 10
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=95.78 E-value=0.031 Score=49.69 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=45.1
Q ss_pred CcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhccCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300 63 RVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 63 ~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
++.+.+|=.+|..+.- ..|...++....+|++|+--.-|.+=+++|++.++.
T Consensus 25 ~~~I~~GqylG~~~Lv--------------------------~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l~~ 76 (191)
T PF03596_consen 25 RRQIVIGQYLGFTILV--------------------------LASLLGAFGLLFIPPEWILGLLGLIPIYLGIKALFS 76 (191)
T ss_pred hhhhhhhHHHHHHHHH--------------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 5779999999988776 677777788889999999888899999999999885
No 11
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=94.83 E-value=0.17 Score=45.67 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=52.5
Q ss_pred HHHhcCcHHHHHHHHHHccC---CCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhccCC
Q psy8300 42 VVSELGDKTFFIAAIMAMRH---PRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIP 118 (256)
Q Consensus 42 flaElGDKTq~~a~~LA~r~---~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp 118 (256)
+.|--=|--=+....+|.+- +++...+|=.++....- ..|..+-++.+.+|
T Consensus 12 y~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~li--------------------------laSL~~a~v~~fvp 65 (205)
T COG4300 12 YIATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILI--------------------------LASLLFAFVLNFVP 65 (205)
T ss_pred HHHhhHHHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHH--------------------------HHHHHHHHHHhhCc
Confidence 33333344444455555543 34779999888877654 44444448899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy8300 119 RIWTYYISTVLFIIFGLKMLREG 141 (256)
Q Consensus 119 ~~~~~~~a~~lFi~fG~~~L~~~ 141 (256)
++|+--.-|..=++.|+|.++.+
T Consensus 66 ~e~I~glLGLIPi~LGik~l~~~ 88 (205)
T COG4300 66 EEWILGLLGLIPIYLGIKVLILG 88 (205)
T ss_pred HHHHHHHHhHHHHHHhhHHhhcc
Confidence 99999899999999999999964
No 12
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=94.69 E-value=0.37 Score=45.81 Aligned_cols=65 Identities=28% Similarity=0.422 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHHcc-CC----CcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh-hhhccCCHH
Q psy8300 47 GDKTFFIAAIMAMR-HP----RVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD-MAANIIPRI 120 (256)
Q Consensus 47 GDKTq~~a~~LA~r-~~----~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G-~~~~~lp~~ 120 (256)
+|+-+..+++++.+ -| +...+.|...|+.+=. +-..+| ++-+.+ .
T Consensus 77 vDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~---------------------------i~i~~g~~Li~~f--~ 127 (302)
T TIGR03718 77 VDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRA---------------------------IFIALGAALIEQF--H 127 (302)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHh--H
Confidence 78889888888763 34 3679999999987753 445555 554432 4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8300 121 WTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 121 ~~~~~a~~lFi~fG~~~L~~ 140 (256)
|+.++.|+..++-|.+++++
T Consensus 128 wi~~ifG~fLi~~a~k~~~~ 147 (302)
T TIGR03718 128 WVLYIFGAFLLYTGIKMLFE 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 67777777777777777775
No 13
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=94.48 E-value=0.94 Score=39.72 Aligned_cols=143 Identities=21% Similarity=0.302 Sum_probs=84.4
Q ss_pred CcHHHHHHHHHHc---cCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhccCCHHHHH
Q psy8300 47 GDKTFFIAAIMAM---RHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTY 123 (256)
Q Consensus 47 GDKTq~~a~~LA~---r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp~~~~~ 123 (256)
+|+-.+++++... +++++..+.|...|+.+-. ++-....++.++. .|+.
T Consensus 12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~--------------------------~~i~~~~~ll~~~--~~i~ 63 (183)
T PF03741_consen 12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRI--------------------------IFIFLASWLLSIF--PWIL 63 (183)
T ss_pred hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHH--------------------------HHHHHHHHHHHHH--HHHH
Confidence 6777777665543 1234679999999997754 3333333665543 7889
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCChhhhHHHHHhhhhcchhhhhhhhccccccCccchhhHHHHHHHHHHHHHHHHHH
Q psy8300 124 YISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISLLSRVVIQAFTLTFL 203 (256)
Q Consensus 124 ~~a~~lFi~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~f~taF~liFL 203 (256)
++.|+..++.|.+++++.. ++|+ |.++.+ + +++ . . +.+ .+.++.+. ..
T Consensus 64 ~igG~~Ll~~a~k~~~~~~--~~d~---~~~~~~-~----~~~--------~-~----~~~------~~~~~~~v---~~ 111 (183)
T PF03741_consen 64 LIGGLFLLYIAIKLLHEER--DEDP---ENAEVE-E----EKK--------F-F----PVS------KSSLWLAV---IQ 111 (183)
T ss_pred HHHHHHHHHHHHHHHHhcc--cccc---chhhhh-h----hhc--------c-c----cch------hHHHHHHH---HH
Confidence 9999999999999988743 1111 100000 0 000 0 0 000 11223332 22
Q ss_pred Hhhcc-----hHHHHHHHHhhccCceEEeehHHHHHHHHHHHHHHHhHHhhhc
Q psy8300 204 AEWGD-----RSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQR 251 (256)
Q Consensus 204 AE~GD-----KTQLATiaLAa~~~p~~V~iGa~lGl~l~t~laVl~G~~l~~~ 251 (256)
-|+=| -|=+|+++++ .+++.++.|.+++....-..+-++.+.+.++
T Consensus 112 I~~~DlvfSlDSV~a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l~~~ 162 (183)
T PF03741_consen 112 IELADLVFSLDSVLAAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLLERF 162 (183)
T ss_pred HHHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 3456666666 7889999999999988888888887776553
No 14
>COG1971 Predicted membrane protein [Function unknown]
Probab=93.39 E-value=0.048 Score=48.82 Aligned_cols=40 Identities=33% Similarity=0.611 Sum_probs=31.1
Q ss_pred hhhhhHhh-hhccCC---HHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8300 105 VLSGAFDM-AANIIP---RIWTYYISTVLFIIFGLKMLREGYKM 144 (256)
Q Consensus 105 ~lsv~~G~-~~~~lp---~~~~~~~a~~lFi~fG~~~L~~~~~~ 144 (256)
.++-++|| +...+| ..|-+|++++++++.|+||++|+++.
T Consensus 48 ~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~~ 91 (190)
T COG1971 48 AIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFKN 91 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 45556664 344445 77789999999999999999999854
No 15
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=93.05 E-value=1.4 Score=41.27 Aligned_cols=53 Identities=25% Similarity=0.224 Sum_probs=37.0
Q ss_pred CcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhccCC----HH----HHHHHHHHHHHHHH
Q psy8300 63 RVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIP----RI----WTYYISTVLFIIFG 134 (256)
Q Consensus 63 ~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp----~~----~~~~~a~~lFi~fG 134 (256)
+++|+.|+.+|+++.- ++++++..+.+-++ ++ .+..++.++..+++
T Consensus 38 ~~~V~~G~~~gl~~s~--------------------------~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~ 91 (283)
T TIGR00145 38 RGWVWVGVLAGFAACL--------------------------AIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMG 91 (283)
T ss_pred hhHHHHHHHHHHHHHH--------------------------HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999997764 55555543333332 33 35788888999999
Q ss_pred HHHHHhh
Q psy8300 135 LKMLREG 141 (256)
Q Consensus 135 ~~~L~~~ 141 (256)
+||.+.+
T Consensus 92 ~Wm~~~~ 98 (283)
T TIGR00145 92 LWMLRMQ 98 (283)
T ss_pred HHHHHHH
Confidence 9999653
No 16
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=92.84 E-value=1.2 Score=41.53 Aligned_cols=149 Identities=26% Similarity=0.256 Sum_probs=82.6
Q ss_pred CcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhccCCH-----------HHHHHHHHHHHH
Q psy8300 63 RVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPR-----------IWTYYISTVLFI 131 (256)
Q Consensus 63 ~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp~-----------~~~~~~a~~lFi 131 (256)
+++|+.|+.+|++... .++..+-.+...++. ..+..++.++-.
T Consensus 35 ~~~V~~G~~~g~~~s~--------------------------~~~~~~~~~~~~~~~~~~~~~~e~~eg~~~liA~~li~ 88 (306)
T PF03239_consen 35 RRWVWLGVAAGLVASL--------------------------VIGAVFAVIFYTLSGDYWGISEELFEGAISLIAVALIT 88 (306)
T ss_pred hheeeecHhHHHHHHH--------------------------HHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHH
Confidence 4889999999998766 555555544444442 234777888888
Q ss_pred HHHHHHHHhhccCCCCCChhhhHHHHHhhhhcchhhhhhhhccccccCccchhhHHHHHHHHHHHHHHHHHHHhhcchHH
Q psy8300 132 IFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISLLSRVVIQAFTLTFLAEWGDRSQ 211 (256)
Q Consensus 132 ~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~f~taF~liFLAE~GDKTQ 211 (256)
.+++||.+.+-+++.+ -+++.++. ++.. +++++.. ..+ +. . +..+..|..+|+. .+=| |=-|=
T Consensus 89 ~m~~wm~~~~~~~~~~-~~~~~~~~---~~~~-~~~~~~~-~~~-~~----~----~~~~~l~~~afl~-vlRE-G~E~v 151 (306)
T PF03239_consen 89 WMVFWMRRHGRKMKGE-WEDKLAKA---LSSG-SEDARAS-QKD-EG----G----GSKWALFLLAFLI-VLRE-GLEAV 151 (306)
T ss_pred HHHHHHHHHHHhhchh-HHHHHHHH---Hhhc-cchhhhh-hhc-cc----c----chhhHHHHHHHHH-HHHh-hHHHH
Confidence 9999999864333221 11111111 1111 1111110 000 00 0 1125667777732 3333 44555
Q ss_pred HHHHHHhhccC--ceEEeehHHHHHHHHHHHHHHHhHHhhhccCCC
Q psy8300 212 LTTIILAARED--VYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVR 255 (256)
Q Consensus 212 LATiaLAa~~~--p~~V~iGa~lGl~l~t~laVl~G~~l~~~Ip~r 255 (256)
+--.++.+..+ ...+..|+.+|.+++.+++.++-+. ..++|.+
T Consensus 152 Lfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~~~~~~-~~~i~~~ 196 (306)
T PF03239_consen 152 LFLAALAASLRKDAASILLGAILGIAAAVVLGWLLYRG-LIRISLR 196 (306)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcChH
Confidence 55556655543 5677888888988888888887654 4456643
No 17
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=89.73 E-value=11 Score=31.63 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=41.9
Q ss_pred HHHHHHHccCCC---cchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh--hhhccCC--HHHHHH
Q psy8300 52 FIAAIMAMRHPR---VTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD--MAANIIP--RIWTYY 124 (256)
Q Consensus 52 ~~a~~LA~r~~~---~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G--~~~~~lp--~~~~~~ 124 (256)
+..+-.++++++ ..+.+|...+-++.. +.+.+| .+.+..| ..++++
T Consensus 12 ~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~---------------------------~~~~~g~~~l~~~~~~~~~~l~~ 64 (191)
T PF01810_consen 12 LLVISNGLRKGFKAGLPVALGAALGDLIYI---------------------------LLAVFGLSALLKSSPWLFMILKL 64 (191)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHhChHHHHHHHH
Confidence 344555666664 446677777766654 333444 4434333 456799
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy8300 125 ISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 125 ~a~~lFi~fG~~~L~~~~ 142 (256)
++++.++++|.+++++..
T Consensus 65 ~G~~~L~~lg~~~~~~~~ 82 (191)
T PF01810_consen 65 LGALYLLYLGYKLLRSKF 82 (191)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999999753
No 18
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=89.64 E-value=0.6 Score=41.90 Aligned_cols=55 Identities=20% Similarity=0.419 Sum_probs=43.7
Q ss_pred cCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Q psy8300 60 RHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLR 139 (256)
Q Consensus 60 r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~ 139 (256)
|++++.+.+|=.++....- ..|...+.....+|++|+--.-|.+=+++|+|-++
T Consensus 21 ~~~~~~IviGqylGf~~Lv--------------------------~~Sl~~a~gl~~iP~~wIlGlLGliPI~lGi~~l~ 74 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILI--------------------------LVSLLLAFGVNLIPEKWVLGLLGLIPIYLGIKVAI 74 (193)
T ss_pred CCCeeEEEEeHHHHHHHHH--------------------------HHHHHHHHHHHhCCHHHHHhHHhHHHHHHHHHHHh
Confidence 4566789999999987754 45655456567999999977888888999999998
Q ss_pred h
Q psy8300 140 E 140 (256)
Q Consensus 140 ~ 140 (256)
+
T Consensus 75 ~ 75 (193)
T TIGR00779 75 K 75 (193)
T ss_pred c
Confidence 5
No 19
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=89.15 E-value=5.2 Score=36.30 Aligned_cols=133 Identities=20% Similarity=0.330 Sum_probs=75.2
Q ss_pred CcHHHHHHHHHHccCC----CcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh-hhhccCCHHH
Q psy8300 47 GDKTFFIAAIMAMRHP----RVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD-MAANIIPRIW 121 (256)
Q Consensus 47 GDKTq~~a~~LA~r~~----~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G-~~~~~lp~~~ 121 (256)
+|+-.+++++.. +-| +...+.|..+|+.+=- +-..+| ++.+ ..|
T Consensus 9 ~DN~~via~~~~-~LP~~~r~~al~~Gi~gAivlR~---------------------------i~i~~~~~Ll~---~~~ 57 (215)
T TIGR03716 9 ADNALVLAVMVK-HLPEKQRKKALFYGLIGAYVFRF---------------------------IALFLASFLIK---FWW 57 (215)
T ss_pred hhHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHH---HHH
Confidence 577777766644 333 3679999999987743 223333 5544 247
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCChhhhHHHHHhhhhcchhhhhhhhccccccCccchhhHHHHHHHHHHHHHHHH
Q psy8300 122 TYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISLLSRVVIQAFTLT 201 (256)
Q Consensus 122 ~~~~a~~lFi~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~f~taF~li 201 (256)
+.++.|+..++-|.+++++. +++ +|.+ +++ .. +.. +-|+.+ +
T Consensus 58 l~~iGG~~Ll~~~~k~l~~~-----~~~-~~~~---------~~~----------~~---~~~-------~~f~~a---v 99 (215)
T TIGR03716 58 IKAIGALYLLYLAIKHFRKK-----KKG-KEDE---------EAE----------KK---KAH-------SGFWRT---V 99 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----ccc-cccc---------ccc----------cc---ccc-------chHHHH---H
Confidence 78888888888888888752 111 1100 000 00 000 112222 2
Q ss_pred HHHhhcch-----HHHHHHHHhhccCceEEeehHHHHHHHHHHHHHHHhHHhhh
Q psy8300 202 FLAEWGDR-----SQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQ 250 (256)
Q Consensus 202 FLAE~GDK-----TQLATiaLAa~~~p~~V~iGa~lGl~l~t~laVl~G~~l~~ 250 (256)
..-|.=|= +=+|.++++ .+|+.++.|..++....-..+-++.+++.+
T Consensus 100 ~~I~~~DlvFSlDSV~A~~git--~~~~ii~~g~~~sIl~lr~~s~~l~~li~r 151 (215)
T TIGR03716 100 LKVELMDIAFSVDSILAAVALS--GQFWVVFLGGIIGILIMRFAATIFVKLLER 151 (215)
T ss_pred HHHHHHHHHHHhhhHHHHHHhc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333342 345555554 688888999888887777777666665443
No 20
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=84.90 E-value=15 Score=32.53 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=29.5
Q ss_pred hhhhhHh-hhhcc--CCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8300 105 VLSGAFD-MAANI--IPRIWTYYISTVLFIIFGLKMLREG 141 (256)
Q Consensus 105 ~lsv~~G-~~~~~--lp~~~~~~~a~~lFi~fG~~~L~~~ 141 (256)
.+..++| ++.+. ++-.-.++++|++++.+|+.|+...
T Consensus 52 l~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~ 91 (203)
T PF01914_consen 52 LIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGS 91 (203)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3666777 65544 5788899999999999999999864
No 21
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=80.45 E-value=23 Score=32.93 Aligned_cols=163 Identities=19% Similarity=0.183 Sum_probs=86.9
Q ss_pred HHHHHHHHHhc---CcHHHHHHHHHHccCCC----cchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhh
Q psy8300 36 AALSVIVVSEL---GDKTFFIAAIMAMRHPR----VTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSG 108 (256)
Q Consensus 36 ~af~~iflaEl---GDKTq~~a~~LA~r~~~----~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv 108 (256)
.++..+++-|. +|+-.+++++ +.+.|+ ...+.|..+|+.+=. +-.
T Consensus 18 ~~l~tl~~lE~vL~iDN~iviai~-~~~Lp~~qr~ral~~Gl~~A~v~R~---------------------------~ll 69 (254)
T COG0861 18 VALLTLILLEIVLGIDNAIVIAIL-ASKLPPKQRKKALFIGLAGALVLRI---------------------------ILL 69 (254)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHH---------------------------HHH
Confidence 56667777775 8998888764 444443 668999988887643 333
Q ss_pred hHh-hhhccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhHHHHHhhhhcchhhhhhhhccccccCccchhhHH
Q psy8300 109 AFD-MAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTI 187 (256)
Q Consensus 109 ~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~ 187 (256)
..| |+.+.- .+.-++.+..++..++.+++++. ++...+..|.-++++.++. . . .++...
T Consensus 70 ~~~s~Ll~l~--~~l~~~fg~~L~~~~~~ll~~~~----~~~~k~~~~~~~~~~~~~~----~-~-----~~~~~~---- 129 (254)
T COG0861 70 ASISWLLTLT--QPLLYIFGLYLLWRDIKLLLGGL----FLLFKATKELHERLEGEEF----F-V-----NGKLKK---- 129 (254)
T ss_pred HHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhcch----hHHHHHHHHHhhhhccccc----c-c-----cccccc----
Confidence 444 554432 22333367777777888887642 1000111111111111110 0 0 000000
Q ss_pred HHHHHHHHHHHHHHHHHh--hcchHHHHHHHHhhccCceEEeehHHHHHHHHHHHHHHHhHHhhhc
Q psy8300 188 SLLSRVVIQAFTLTFLAE--WGDRSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQR 251 (256)
Q Consensus 188 ~~~~~~f~taF~liFLAE--~GDKTQLATiaLAa~~~p~~V~iGa~lGl~l~t~laVl~G~~l~~~ 251 (256)
...|+.+...+-++- +.=-|=+|.++++ .+|+.++.|.++|....=..+=.+.+.+.++
T Consensus 130 ---~~~f~~ai~~I~i~D~vFSlDSV~Aa~g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~ 190 (254)
T COG0861 130 ---ATPFWGAIIQIELADLVFSLDSVIAAVGMA--GHPFVMVTAVIFAILVMRFAAFLLARLLERH 190 (254)
T ss_pred ---cCcHHHHHHHHHHHHHHHhhhHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 122333333332221 1224667777776 7788889999988887777777776665543
No 22
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=75.92 E-value=13 Score=32.55 Aligned_cols=63 Identities=29% Similarity=0.373 Sum_probs=48.5
Q ss_pred CcHHHHHHHHHHccCCC----cchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh-hhhccCCHHH
Q psy8300 47 GDKTFFIAAIMAMRHPR----VTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD-MAANIIPRIW 121 (256)
Q Consensus 47 GDKTq~~a~~LA~r~~~----~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G-~~~~~lp~~~ 121 (256)
+|+-.++++ .+.+.|+ ...+.|...|+.+.. +-.++| ++-+ ..+
T Consensus 14 ~DN~~vi~~-~t~~lp~~~r~~~~~~G~~~A~vlr~---------------------------if~~~G~~ll~---~~~ 62 (176)
T TIGR03717 14 GDNAVVIAL-AARNLPAHQRKKAIFWGTAGAIVLRI---------------------------LLTAVAVYLLA---IPF 62 (176)
T ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHH---hHH
Confidence 788888887 3444443 568999999998875 555556 7766 378
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy8300 122 TYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 122 ~~~~a~~lFi~fG~~~L~~ 140 (256)
.++++|++.++.|..|+.+
T Consensus 63 ~~iaGGllLl~ia~~ml~~ 81 (176)
T TIGR03717 63 LKLIGGLLLLWIGWKLLLE 81 (176)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999874
No 23
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=71.33 E-value=5.4 Score=33.50 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=25.1
Q ss_pred hhhhHhhhhccCCH---HHHHHHHHHHHHHHHHHHHHhh
Q psy8300 106 LSGAFDMAANIIPR---IWTYYISTVLFIIFGLKMLREG 141 (256)
Q Consensus 106 lsv~~G~~~~~lp~---~~~~~~a~~lFi~fG~~~L~~~ 141 (256)
++...++..+++.. ++++.+++++++.+|+++++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~g~~li~~av~l~~~g 191 (191)
T PF01810_consen 153 LALLGSRLRRKFSSRRIRWINRISGLLLIGFAVYLLYSG 191 (191)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444433322 3789999999999999999864
No 24
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=67.28 E-value=37 Score=31.77 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCChhhhHHHHHhhhhcchhhhhhhhccccccCccchhhHH----HHHH
Q psy8300 117 IPRIWTYYISTVLF-IIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTI----SLLS 191 (256)
Q Consensus 117 lp~~~~~~~a~~lF-i~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~----~~~~ 191 (256)
+...+.-++....+ +-|++|++++-++.=| +|.||..+ -+|.++-+-.+ ....
T Consensus 140 ~nt~~glil~~~~~~~pf~ifl~~~ff~~iP----~eleEAA~------------------iDGas~~~if~kIvlPl~~ 197 (281)
T COG0395 140 LNTYWGLILPYLAFGLPFAIFLLRQFFRTIP----KELEEAAR------------------IDGASEFQIFFKIVLPLAK 197 (281)
T ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHhCC----HHHHHHHH------------------HcCCChhHHHHHHHHHcch
Confidence 33333333333333 5789999998875544 34443321 11222211111 2235
Q ss_pred HHHHHHHHHHHHHhhcc-----------hHHHHHHHHhhc----c--CceEEeehHHHHHHHHHHHHHHHhHHhh
Q psy8300 192 RVVIQAFTLTFLAEWGD-----------RSQLTTIILAAR----E--DVYGVTLGGVLGHSLCTGLAVIGGRFIA 249 (256)
Q Consensus 192 ~~f~taF~liFLAE~GD-----------KTQLATiaLAa~----~--~p~~V~iGa~lGl~l~t~laVl~G~~l~ 249 (256)
+.+.++++..|+..|.| +++-.++++..- + ++-.+..|++++.+=.-.+-++..|++.
T Consensus 198 P~laa~~I~~fi~~WN~fl~pli~~~~~~~~tl~v~l~~~~~~~~~~~w~~~~A~~vi~~lP~li~f~~~Qr~~v 272 (281)
T COG0395 198 PGLAAVAIFTFIGAWNEFLWPLILLSSPNLLTLPVGLNSFGGSEGGTDWGLIMAAAVLAILPVLIVFLFFQRYFV 272 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999998865 434334433322 1 3444555555555544444444444443
No 25
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=65.52 E-value=78 Score=29.19 Aligned_cols=87 Identities=25% Similarity=0.368 Sum_probs=62.7
Q ss_pred CCcchHHHHHHHHHHHHHHhc-----------CcHHH---------HHHHHHHccCCCcchHHHHHHHHHHhchhccchh
Q psy8300 26 GDLGFIHAFVAALSVIVVSEL-----------GDKTF---------FIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEM 85 (256)
Q Consensus 26 ~~~~~~~~f~~af~~iflaEl-----------GDKTq---------~~a~~LA~r~~~~~Vf~G~~~al~~~t~~~~~~~ 85 (256)
++..|.++|+++.++.-+.-+ ||-|. +.++++|+.++.-..| -++--+.+..
T Consensus 94 ~~~~f~~gFvtasllfCvG~m~I~Gsi~~Gl~gd~siL~~KsiLDg~taiifaaslG~gV~~-saipv~iyQg------- 165 (226)
T PF04474_consen 94 GDSSFAEGFVTASLLFCVGAMAILGSIQDGLTGDPSILLTKSILDGFTAIIFAASLGIGVAF-SAIPVFIYQG------- 165 (226)
T ss_pred CcccHHHHHHHHHHHHHcchhHHHhHHHhHhcCChHHHHHHHHHHHHHHHHHHHHcCchHHH-HHHHHHHHHH-------
Confidence 355789999999887665543 78775 4678888888765444 4444455555
Q ss_pred hhhhhhhhccccccCCchhhhhhhHhhhhccCCHHHH---HHHHHHHHHHHHHHHHH
Q psy8300 86 LLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWT---YYISTVLFIIFGLKMLR 139 (256)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp~~~~---~~~a~~lFi~fG~~~L~ 139 (256)
.+..+.+++..++++..+ ..+.+++-+..|+.++.
T Consensus 166 -------------------~l~llA~~l~~~ls~~~i~~~savGGili~~iGlnll~ 203 (226)
T PF04474_consen 166 -------------------SLTLLAGFLAPLLSPAMINEISAVGGILILAIGLNLLG 203 (226)
T ss_pred -------------------HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 677777888889988876 56677788888888776
No 26
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=63.08 E-value=69 Score=29.80 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.7
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300 114 ANIIPRIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 114 ~~~lp~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
...+|+.+.-|+--++|+.+|+++++.
T Consensus 328 ~g~l~P~laaw~P~iif~~~~~~ll~r 354 (356)
T PRK15071 328 VYGIPPIIGALLPSLLFLGISLYLLRR 354 (356)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 356899999999999999999998874
No 27
>PRK10995 inner membrane protein; Provisional
Probab=57.10 E-value=17 Score=32.47 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=28.6
Q ss_pred hhhhhHh-hhhcc--CCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8300 105 VLSGAFD-MAANI--IPRIWTYYISTVLFIIFGLKMLREG 141 (256)
Q Consensus 105 ~lsv~~G-~~~~~--lp~~~~~~~a~~lFi~fG~~~L~~~ 141 (256)
.+..++| ++.+. ++....++++|++.+.+|+.|++..
T Consensus 56 l~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~ 95 (221)
T PRK10995 56 MVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ 95 (221)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3556666 55444 4677889999999999999999864
No 28
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=55.41 E-value=23 Score=31.15 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy8300 119 RIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 119 ~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
.++.++..+++|+.+|++++++
T Consensus 185 ~~~~~~~~G~~li~~g~~l~~~ 206 (208)
T COG1280 185 SRIINRLFGVLLIGFGVKLALS 206 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5678999999999999999885
No 29
>TIGR00948 2a75 L-lysine exporter.
Probab=54.20 E-value=70 Score=26.87 Aligned_cols=60 Identities=8% Similarity=0.170 Sum_probs=38.9
Q ss_pred HHHHccCCC-cchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh--hhhccCCHH--HHHHHHHHH
Q psy8300 55 AIMAMRHPR-VTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD--MAANIIPRI--WTYYISTVL 129 (256)
Q Consensus 55 ~~LA~r~~~-~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G--~~~~~lp~~--~~~~~a~~l 129 (256)
+..++|+++ ....+|...|..+.. +.+.+| .+.+..|.- .+++++++-
T Consensus 13 i~~~~~~~~g~~~~~G~~~g~~i~~---------------------------~~~~~Gl~~ll~~~p~~~~~l~~~Ga~Y 65 (177)
T TIGR00948 13 LRQGIRREHVLLIVALCCICDLVLI---------------------------AAGVFGVAALLAASPILLAVLTWGGALF 65 (177)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 334444444 446677777766654 455555 455555543 568888888
Q ss_pred HHHHHHHHHHhh
Q psy8300 130 FIIFGLKMLREG 141 (256)
Q Consensus 130 Fi~fG~~~L~~~ 141 (256)
.+++|..++++.
T Consensus 66 Llylg~~~~r~~ 77 (177)
T TIGR00948 66 LLWYGFLAAKTA 77 (177)
T ss_pred HHHHHHHHHHHH
Confidence 899999999975
No 30
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=53.64 E-value=58 Score=29.75 Aligned_cols=25 Identities=28% Similarity=0.723 Sum_probs=22.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH
Q psy8300 115 NIIPRIWTYYISTVLFIIFGLKMLR 139 (256)
Q Consensus 115 ~~lp~~~~~~~a~~lFi~fG~~~L~ 139 (256)
..+|+.+.-|+.-++|+.+|+++++
T Consensus 329 ~~l~p~~a~w~p~ii~~~~~~~l~~ 353 (354)
T PF03739_consen 329 GNLPPFIAAWLPNIIFLILGLYLLR 353 (354)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 31
>PRK11469 hypothetical protein; Provisional
Probab=52.89 E-value=26 Score=30.89 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 119 RIWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 119 ~~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
.++..+++|++++..|+++|.+..
T Consensus 163 g~~a~~lgG~iLI~iGi~il~~h~ 186 (188)
T PRK11469 163 GKKAEILGGLVLIGIGVQILWTHF 186 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455688999999999999999754
No 32
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=50.92 E-value=83 Score=27.65 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHccCCC---cchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhh
Q psy8300 33 AFVAALSVIVVSELGDKTFFIAAIMAMRHPR---VTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGA 109 (256)
Q Consensus 33 ~f~~af~~iflaElGDKTq~~a~~LA~r~~~---~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~ 109 (256)
+|+.+.....+. ..=..+..+.-++++++ ..+-+|...+..+.. +.++
T Consensus 8 ~~~~~~~~~~~~--PGP~~~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~---------------------------~l~~ 58 (208)
T COG1280 8 AFLLAALVLAAT--PGPDNLLVLARSLSRGRRAGLATALGIALGDLVHM---------------------------LLAA 58 (208)
T ss_pred HHHHHHHHHhcC--CCccHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH---------------------------HHHH
Confidence 334444444444 33344455556666654 457777777766543 4455
Q ss_pred Hh--hhhccCC--HHHHHHHHHHHHHHHHHHHHHhh
Q psy8300 110 FD--MAANIIP--RIWTYYISTVLFIIFGLKMLREG 141 (256)
Q Consensus 110 ~G--~~~~~lp--~~~~~~~a~~lFi~fG~~~L~~~ 141 (256)
+| -+...-| ...++++++.-.+++|.++++..
T Consensus 59 ~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 59 LGLAALLATSPALFTVLKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55 2222222 34579999999999999999975
No 33
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=49.62 E-value=1.4e+02 Score=28.89 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=50.6
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCh-hhhHHHHHhhhhcchhhhhhhhccccccCccchhhHHHHHHH
Q psy8300 114 ANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQ-EELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISLLSR 192 (256)
Q Consensus 114 ~~~lp~~~~~~~a~~lFi~fG~~~L~~~~~~~~d~~~-~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~ 192 (256)
.+++|. .+.|++-+.+++.+.....+..+.++. +|..|.++ +|--.+.+.|
T Consensus 45 G~~lp~----~~~G~lvl~m~~la~~~~v~~g~~~~~s~e~r~~~a------------------------~rlGnklFiP 96 (308)
T PF06166_consen 45 GDYLPP----FVVGILVLVMALLAGFGQVGIGSYKEPSEEEREASA------------------------KRLGNKLFIP 96 (308)
T ss_pred Cccchh----HHHHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHH------------------------HHhcCeehHH
Confidence 455565 556778888888888776655433322 22111000 0000134566
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHhhccCceEEeehHHHHHHHHHHHHHHHhHHhhh
Q psy8300 193 VVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQ 250 (256)
Q Consensus 193 ~f~taF~liFLAE~GDKTQLATiaLAa~~~p~~V~iGa~lGl~l~t~laVl~G~~l~~ 250 (256)
++.-..+.+..+-+-.+. .| .+|- -|+..|+.+.+.++.+..-.+.|
T Consensus 97 al~i~v~a~~~a~~~~~l-----~l---~d~~---~~tlv~lgig~i~Ali~a~~itk 143 (308)
T PF06166_consen 97 ALLIPVVAVIGAQLFTKL-----PL---LDPK---NGTLVGLGIGAIVALIVALIITK 143 (308)
T ss_pred HHHHHHHHHHHHHHhccc-----cc---cCCC---cchHHHHHHHHHHHHHHHHHHhC
Confidence 666666655555532222 00 1111 16777777777777777666544
No 34
>PRK10739 putative antibiotic transporter; Provisional
Probab=49.36 E-value=1.2e+02 Score=27.00 Aligned_cols=36 Identities=6% Similarity=0.023 Sum_probs=28.6
Q ss_pred hhhhhHh-hhhcc--CCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300 105 VLSGAFD-MAANI--IPRIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 105 ~lsv~~G-~~~~~--lp~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
++..++| ++-+. ++..-.+++.|++.+.+|+.|+.+
T Consensus 52 l~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~ 90 (197)
T PRK10739 52 LVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFP 90 (197)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 4666777 55444 577888999999999999999964
No 35
>PRK10229 threonine efflux system; Provisional
Probab=48.44 E-value=1.6e+02 Score=25.16 Aligned_cols=65 Identities=14% Similarity=0.223 Sum_probs=42.2
Q ss_pred HHHHHHHHHccCCC---cchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh--hhhccCCH--HHH
Q psy8300 50 TFFIAAIMAMRHPR---VTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD--MAANIIPR--IWT 122 (256)
Q Consensus 50 Tq~~a~~LA~r~~~---~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G--~~~~~lp~--~~~ 122 (256)
..+..+--+.++++ ....+|...|..+.. ..+.+| .+....|. ..+
T Consensus 22 ~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~---------------------------~l~~~Gl~~ll~~~p~~~~~l 74 (206)
T PRK10229 22 DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWA---------------------------GVALLGLHLILEKMAWLHTII 74 (206)
T ss_pred hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHhHHHHHHH
Confidence 55666666777765 335666666666544 334445 45555553 456
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy8300 123 YYISTVLFIIFGLKMLREG 141 (256)
Q Consensus 123 ~~~a~~lFi~fG~~~L~~~ 141 (256)
++++++-.+++|..++++.
T Consensus 75 ~~~Ga~yLlylg~~~~~~~ 93 (206)
T PRK10229 75 MVGGGLYLCWMGYQMLRGA 93 (206)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8888888889999999864
No 36
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=47.15 E-value=76 Score=29.81 Aligned_cols=26 Identities=0% Similarity=0.153 Sum_probs=23.1
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHH
Q psy8300 114 ANIIPRIWTYYISTVLFIIFGLKMLR 139 (256)
Q Consensus 114 ~~~lp~~~~~~~a~~lFi~fG~~~L~ 139 (256)
...+|+.+.-|.--++|+..|+++++
T Consensus 322 ~g~lpp~la~Wlp~i~~~~~~~~l~~ 347 (366)
T PRK15120 322 KGKLDPMIWMWAVNLIYLALAIVLNL 347 (366)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999885
No 37
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=46.83 E-value=38 Score=32.21 Aligned_cols=26 Identities=8% Similarity=-0.051 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 117 IPRIWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 117 lp~~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
-.+.+.+.+.|..++++|+.++.++.
T Consensus 125 ~~~~~G~~l~G~gllf~gl~~m~~~~ 150 (307)
T TIGR00704 125 RAGQLGRSGIGLGLIFLALELISQLV 150 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999998875
No 38
>PRK11111 hypothetical protein; Provisional
Probab=46.55 E-value=22 Score=32.01 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=29.1
Q ss_pred hhhhhHh-hhhcc--CCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300 105 VLSGAFD-MAANI--IPRIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 105 ~lsv~~G-~~~~~--lp~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
.+..++| ++.+. ++-.-.++++|++.+.+|+.|++.
T Consensus 58 l~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g 96 (214)
T PRK11111 58 LISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISG 96 (214)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 4667778 66555 477788999999999999999964
No 39
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=45.84 E-value=90 Score=24.63 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8300 117 IPRIWTYYISTVLFIIFGLKMLREG 141 (256)
Q Consensus 117 lp~~~~~~~a~~lFi~fG~~~L~~~ 141 (256)
+|+.+...+.+.++++.|...++-+
T Consensus 69 ~~~~~a~liv~~~~l~la~i~~~~~ 93 (121)
T PF07332_consen 69 LPPWLAFLIVAGLYLLLALILLLIG 93 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888888887666544
No 40
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=45.65 E-value=1e+02 Score=24.51 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hcc-CCCCCChhhhHHHHHhhhhcch
Q psy8300 120 IWTYYISTVLFIIFGLKMLRE-GYK-MSPNEGQEELEEVQSDLRKRDD 165 (256)
Q Consensus 120 ~~~~~~a~~lFi~fG~~~L~~-~~~-~~~d~~~~E~~e~~~~l~~~~~ 165 (256)
..+.++=..+.+.||.+.|.. +|. +.-+|=+|+.+|.++|+++..+
T Consensus 35 ~ii~~lP~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~ 82 (91)
T PF08285_consen 35 EIIPYLPFYALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKA 82 (91)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHH
Confidence 344555555666777776643 232 1223345667777777765443
No 41
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=44.28 E-value=69 Score=26.83 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=39.8
Q ss_pred HHHHHccCCC---cchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh--hhhccCCH--HHHHHHH
Q psy8300 54 AAIMAMRHPR---VTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD--MAANIIPR--IWTYYIS 126 (256)
Q Consensus 54 a~~LA~r~~~---~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G--~~~~~lp~--~~~~~~a 126 (256)
.+.-+.++++ ..+.+|...+..+.. +.+.+| .+.+..|. ..+++++
T Consensus 9 ~~~~~~~~G~~~~~~~~~G~~~g~~~~~---------------------------~~~~~Gl~~l~~~~~~~~~~l~~~G 61 (185)
T TIGR00949 9 VMQTSLSSGRRAGVLTILGIALGDAIWI---------------------------VLSLLGLAVLISKSVILFTVIKWLG 61 (185)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344444443 446777777776654 334444 45566664 5678888
Q ss_pred HHHHHHHHHHHHHhh
Q psy8300 127 TVLFIIFGLKMLREG 141 (256)
Q Consensus 127 ~~lFi~fG~~~L~~~ 141 (256)
++..+++|..++++.
T Consensus 62 a~yLl~lg~~~~~~~ 76 (185)
T TIGR00949 62 GAYLIYLGIKMLRKK 76 (185)
T ss_pred HHHHHHHHHHHHHcc
Confidence 888899999998853
No 42
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=42.43 E-value=48 Score=29.92 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=26.2
Q ss_pred hhhhhHhhhhccCCHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8300 105 VLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYK 143 (256)
Q Consensus 105 ~lsv~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~~ 143 (256)
..+++.|..+...++..+-+.+..-.+.-++.|-...|-
T Consensus 17 ~~alvaG~aga~~~~~~ili~Gla~liAga~SMa~GeYl 55 (225)
T cd02434 17 IFAIVAGVVGAGLSPFVILIIGFANLLADGISMAAGEYV 55 (225)
T ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777755555667766666666666777888776663
No 43
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=42.39 E-value=49 Score=25.17 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=18.0
Q ss_pred CCChhhhHHHHHhhhhcchhhhhh
Q psy8300 147 NEGQEELEEVQSDLRKRDDEFEKE 170 (256)
Q Consensus 147 d~~~~E~~e~~~~l~~~~~~~~~~ 170 (256)
|+++.-.+|.|++|+++|.+..+.
T Consensus 5 e~E~r~L~eiEr~L~~~DP~fa~~ 28 (82)
T PF11239_consen 5 EHEQRRLEEIERQLRADDPRFAAR 28 (82)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHH
Confidence 334556889999999988877654
No 44
>PRK10621 hypothetical protein; Provisional
Probab=42.22 E-value=47 Score=29.95 Aligned_cols=38 Identities=8% Similarity=0.032 Sum_probs=31.7
Q ss_pred hhhhhHh-hhhccCCHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 105 VLSGAFD-MAANIIPRIWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 105 ~lsv~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
.++..+| ++.+++|++..+.+...+.++.|++++++.+
T Consensus 217 ~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~~~~~~~ 255 (266)
T PRK10621 217 FLGARLGARLVLSKGQKLIRPMIVIVSAVMSAKLLYDSH 255 (266)
T ss_pred HHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555556 6788899999999999999999999999875
No 45
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=41.57 E-value=82 Score=22.64 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=22.3
Q ss_pred hhhhhHh-hhhccCCHHHHHHHHHHHHHHHH
Q psy8300 105 VLSGAFD-MAANIIPRIWTYYISTVLFIIFG 134 (256)
Q Consensus 105 ~lsv~~G-~~~~~lp~~~~~~~a~~lFi~fG 134 (256)
.++..+| ++.+++ .++.+++++++++++|
T Consensus 38 ~~G~~~G~~~~~~~-~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 38 LLGLLLGRRLGRFI-GSYAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence 6788888 566644 5678999999998775
No 46
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=41.22 E-value=44 Score=28.79 Aligned_cols=36 Identities=11% Similarity=0.245 Sum_probs=32.3
Q ss_pred hhhhhHh-hhhccCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300 105 VLSGAFD-MAANIIPRIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 105 ~lsv~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
++++.+| ++...+|+++.+.+.++..+++++++++.
T Consensus 74 ~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~ 110 (240)
T PF01925_consen 74 LIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLK 110 (240)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888 78889999999999999999999999885
No 47
>COG0730 Predicted permeases [General function prediction only]
Probab=40.70 E-value=1.7e+02 Score=25.90 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=32.7
Q ss_pred hhhhhHh-hhhccCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8300 105 VLSGAFD-MAANIIPRIWTYYISTVLFIIFGLKMLREG 141 (256)
Q Consensus 105 ~lsv~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~ 141 (256)
+++..+| ++...+|.++.+.+-+++.++.++++++..
T Consensus 84 ~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~ 121 (258)
T COG0730 84 LIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGP 121 (258)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6777778 788999999999999999999999999974
No 48
>COG0795 Predicted permeases [General function prediction only]
Probab=40.48 E-value=1.2e+02 Score=28.39 Aligned_cols=75 Identities=23% Similarity=0.475 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHccCCC-----cchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhh
Q psy8300 32 HAFVAALSVIVVSELGDKTFFIAAIMAMRHPR-----VTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVL 106 (256)
Q Consensus 32 ~~f~~af~~iflaElGDKTq~~a~~LA~r~~~-----~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (256)
.-+...|..+.++ ++++.++.+++| ...+.|.+.++.+- ++
T Consensus 279 ~r~a~pl~~~~~~-------lla~~l~~~~~R~~~~~~~~~~~i~~~~~~~---------------------------~~ 324 (364)
T COG0795 279 RRLALPLLVLAMA-------LLALPLSLRNPRSGRLGLRLLGGILLGLLFY---------------------------VL 324 (364)
T ss_pred HHHHHHHHHHHHH-------HHHHHHhhcCccccchhHHHHHHHHHHHHHH---------------------------HH
Confidence 3445555555544 677888888776 11334444444443 34
Q ss_pred hhhHh-h-hhccCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300 107 SGAFD-M-AANIIPRIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 107 sv~~G-~-~~~~lp~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
...++ + ....+|+.+.-+.-.++|+..|+|.++.
T Consensus 325 ~~~~~~~~~~~~l~p~~a~~~p~~i~l~~~~~l~~~ 360 (364)
T COG0795 325 LFLLGALALAGKLPPFLAAWLPNLVFLALGLWLLRR 360 (364)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555 2 4578999999999999999999999885
No 49
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=40.02 E-value=84 Score=29.74 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8300 119 RIWTYYISTVLFIIFGLKMLREGYKM 144 (256)
Q Consensus 119 ~~~~~~~a~~lFi~fG~~~L~~~~~~ 144 (256)
..|...+++++.+.+|+|++|...+.
T Consensus 87 ~~~le~~S~~lii~lGl~ll~r~~r~ 112 (279)
T PRK10019 87 EPWLQLISAVIIISTAFWMFWRTWRG 112 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999987644
No 50
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=39.03 E-value=1.5e+02 Score=30.82 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=33.4
Q ss_pred cccccCCchhhhhhhHhhhh-ccCCHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 95 TFYTYSPQVLVLSGAFDMAA-NIIPRIWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 95 ~~~~~~~~~~~lsv~~G~~~-~~lp~~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
-..-|+|+.+++++++-+.. +.......+.+-|+-++++|++++-++.
T Consensus 106 ~l~~~~~~ll~~G~~~~~f~~~~~~~~lG~~~~GiGl~f~sl~l~~~a~ 154 (533)
T COG1283 106 DLSWLSPPLLAIGAILFFFGKSSKLRQLGRVLFGIGLIFLSLELLGQAT 154 (533)
T ss_pred hhhHHHHHHHHHHHHHHHHcchHHHHhcchhHHHHHHHHHHHHHHHHhh
Confidence 34456666666666655544 4444556688889999999999998875
No 51
>PRK10229 threonine efflux system; Provisional
Probab=38.53 E-value=51 Score=28.33 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy8300 120 IWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 120 ~~~~~~a~~lFi~fG~~~L~~ 140 (256)
++++.+++++++.+|++++.+
T Consensus 185 ~~in~~~g~~li~~~i~l~~~ 205 (206)
T PRK10229 185 KWIDGFAGALFAGFGIHLIIS 205 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999998874
No 52
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=37.01 E-value=1.5e+02 Score=25.65 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=25.1
Q ss_pred CchhhhhhhHhhhh---ccC--CHHHHHHHHHHHHHHHHHHHH
Q psy8300 101 PQVLVLSGAFDMAA---NII--PRIWTYYISTVLFIIFGLKML 138 (256)
Q Consensus 101 ~~~~~lsv~~G~~~---~~l--p~~~~~~~a~~lFi~fG~~~L 138 (256)
.|+++++...+.+. +.+ ..++++.+.|++++.+|+|++
T Consensus 168 lPll~~~~~~~~~~~~~~~~~~~~~~i~~~~G~lli~~g~~~l 210 (211)
T PF02683_consen 168 LPLLLIGLFSGSLLRRLRKLRRWSRWIKRISGILLIALGLYLL 210 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555332 222 234679999999999999986
No 53
>COG0730 Predicted permeases [General function prediction only]
Probab=36.64 E-value=75 Score=28.18 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=31.6
Q ss_pred hhhhhHh-hhhccCCHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 105 VLSGAFD-MAANIIPRIWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 105 ~lsv~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
+++..+| ++.+++|++..+.+.+.+.+..+++++++..
T Consensus 217 ~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~~~~ 255 (258)
T COG0730 217 ILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLLRGL 255 (258)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666 6788999999999999999999999988653
No 54
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=36.42 E-value=1.3e+02 Score=25.75 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=27.7
Q ss_pred hhhhhHh-hhhccCCHHHHHHHHHHHHHHHHHHH
Q psy8300 105 VLSGAFD-MAANIIPRIWTYYISTVLFIIFGLKM 137 (256)
Q Consensus 105 ~lsv~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~ 137 (256)
+++..+| ++.+++|+++.+.+..++.+..|++|
T Consensus 207 ~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~l 240 (240)
T PF01925_consen 207 FLGAFLGAKLARKIPQKVFRRIFLILLLLSGLKL 240 (240)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 6777777 78899999999999999888888764
No 55
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=34.82 E-value=1.9e+02 Score=26.11 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=5.8
Q ss_pred HHHHHHHHHhHHh
Q psy8300 236 LCTGLAVIGGRFI 248 (256)
Q Consensus 236 l~t~laVl~G~~l 248 (256)
++-.+.+..+..+
T Consensus 140 v~~i~~i~~~~~~ 152 (248)
T PF11368_consen 140 VLLILTIILQKFL 152 (248)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 56
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=32.38 E-value=73 Score=27.45 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=22.8
Q ss_pred chhhhhhhHhhhhccCCHHHHHHHHHHHHHHHHHH
Q psy8300 102 QVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLK 136 (256)
Q Consensus 102 ~~~~lsv~~G~~~~~lp~~~~~~~a~~lFi~fG~~ 136 (256)
..++++...+++.+...+++.+ +++++++++|+|
T Consensus 166 ~ll~~~~~~~~l~~~~~~~~~r-~~g~~~i~~G~~ 199 (199)
T PF13386_consen 166 ALLLAGLLAGKLSRRLRRRLLR-LAGVLLIILGIY 199 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC
Confidence 3334555555666666666666 788888889975
No 57
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=32.18 E-value=1.5e+02 Score=27.56 Aligned_cols=78 Identities=23% Similarity=0.314 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhcCcHHH-----HHHHHHHccCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhh
Q psy8300 32 HAFVAALSVIVVSELGDKTF-----FIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVL 106 (256)
Q Consensus 32 ~~f~~af~~iflaElGDKTq-----~~a~~LA~r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (256)
..|+.+...|-++ |=.| ++++.++ ...+.+++|.+.|...|- ..
T Consensus 131 ~~f~~ai~~I~i~---D~vFSlDSV~Aa~g~~--~~~~im~~a~i~aI~~m~--------------------------~a 179 (254)
T COG0861 131 TPFWGAIIQIELA---DLVFSLDSVIAAVGMA--GHPFVMVTAVIFAILVMR--------------------------FA 179 (254)
T ss_pred CcHHHHHHHHHHH---HHHHhhhHHHHHHHHh--cCchHHHHHHHHHHHHHH--------------------------HH
Confidence 4566666655444 4333 3333333 556779999999988876 55
Q ss_pred hhhHhhhhccCCHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 107 SGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 107 sv~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
+-.+.-+.++.| ++.+++....++.|++|+.+++
T Consensus 180 a~~l~~ll~r~p--~l~~~~~~iL~~IG~kli~~~~ 213 (254)
T COG0861 180 AFLLARLLERHP--TLKYLALVILLFIGVKLILEGL 213 (254)
T ss_pred HHHHHHHHHHch--HHHHHHHHHHHHHHHHHHHhhh
Confidence 555553334443 4677888888889999999863
No 58
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=32.16 E-value=90 Score=27.51 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=22.7
Q ss_pred hhhhhHhhhhccCCHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 105 VLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 105 ~lsv~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
.++++.|..+.-.++..+-..+..--+.-++.|-...|
T Consensus 16 ~~~lv~G~a~a~~~~~~vl~~gla~~iAga~SMa~G~y 53 (213)
T PF01988_consen 16 TFGLVAGVAGAGVSSSVVLLAGLAGLIAGAISMAVGEY 53 (213)
T ss_pred HHHHHHHHHHcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666664443336666666666666666676766655
No 59
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=31.99 E-value=72 Score=29.48 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=6.4
Q ss_pred CcchHHHHHHHHHHhc
Q psy8300 63 RVTVFIGAIAALALMT 78 (256)
Q Consensus 63 ~~~Vf~G~~~al~~~t 78 (256)
|++++.|.++.-++.|
T Consensus 193 Rr~~~v~~~iiaAiiT 208 (258)
T PRK10921 193 RPYVLVGAFVVGMLLT 208 (258)
T ss_pred CcHHhHHHHHHHHHcC
Confidence 3444444443333333
No 60
>PRK10958 leucine export protein LeuE; Provisional
Probab=31.87 E-value=2.2e+02 Score=24.95 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=24.5
Q ss_pred hhhhHh--hhhccCCH--HHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 106 LSGAFD--MAANIIPR--IWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 106 lsv~~G--~~~~~lp~--~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
+.+.+| .+.+..|. ..+++++++-.+++|.++++++.
T Consensus 59 ~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~~~~ 99 (212)
T PRK10958 59 FLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLRAAL 99 (212)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444 34444443 34588888888999999998753
No 61
>KOG2325|consensus
Probab=31.41 E-value=4.9e+02 Score=26.68 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhh-cchHHHHHHHHhhccCceEEeehH
Q psy8300 191 SRVVIQAFTLTFLAEW-GDRSQLTTIILAAREDVYGVTLGG 230 (256)
Q Consensus 191 ~~~f~taF~liFLAE~-GDKTQLATiaLAa~~~p~~V~iGa 230 (256)
...+.+.|...|.++- ++-+|..++.+-.-.+-..|+-++
T Consensus 265 ~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~g 305 (488)
T KOG2325|consen 265 LVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNG 305 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhh
Confidence 4567777888888887 999999999887765434444333
No 62
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=30.88 E-value=1.5e+02 Score=26.95 Aligned_cols=79 Identities=24% Similarity=0.242 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCcHHHH---HHHHHHccCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhh
Q psy8300 33 AFVAALSVIVVSELGDKTFF---IAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGA 109 (256)
Q Consensus 33 ~f~~af~~iflaElGDKTq~---~a~~LA~r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~ 109 (256)
.|+.+...| |+=|=.|= +.++.|...+.+.+++|.+.+...|- ..+-.
T Consensus 94 ~f~~av~~I---~~~DlvFSlDSV~A~~git~~~~ii~~g~~~sIl~lr--------------------------~~s~~ 144 (215)
T TIGR03716 94 GFWRTVLKV---ELMDIAFSVDSILAAVALSGQFWVVFLGGIIGILIMR--------------------------FAATI 144 (215)
T ss_pred hHHHHHHHH---HHHHHHHHhhhHHHHHHhccChHHHHHHHHHHHHHHH--------------------------HHHHH
Confidence 344443433 44455542 22333444566778888888877766 55555
Q ss_pred HhhhhccCCHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 110 FDMAANIIPRIWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 110 ~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
+..+.++. .++.+.+.....+.|++|+.+++
T Consensus 145 l~~li~r~--p~L~~~~~~iL~~ig~kLil~~~ 175 (215)
T TIGR03716 145 FVKLLERF--PELETAAFLLIGWIGVKLLLETL 175 (215)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333 35788888888899999999874
No 63
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=30.19 E-value=1.1e+02 Score=26.75 Aligned_cols=75 Identities=24% Similarity=0.326 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcCcHHH-----HHHHHHHccCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhh
Q psy8300 33 AFVAALSVIVVSELGDKTF-----FIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLS 107 (256)
Q Consensus 33 ~f~~af~~iflaElGDKTq-----~~a~~LA~r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 107 (256)
.+..+...| |+=|=.| ++++.++ .+.+.+++|.+.+...|- ..+
T Consensus 104 ~~~~~v~~I---~~~DlvfSlDSV~a~~~it--~~~~iv~~g~i~si~~m~--------------------------~~~ 152 (183)
T PF03741_consen 104 SLWLAVIQI---ELADLVFSLDSVLAAVGIT--DDFFIVITGNIISILLMR--------------------------FLS 152 (183)
T ss_pred HHHHHHHHH---HHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHH--------------------------HHH
Confidence 454444444 4445444 2333333 456789999999988876 566
Q ss_pred hhHhhhhccCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300 108 GAFDMAANIIPRIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 108 v~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
-.+..+.++. .++++.+..+..+.|++|+.|
T Consensus 153 ~~~~~~l~~~--p~l~~~~~~~L~~ig~~li~~ 183 (183)
T PF03741_consen 153 FLLAKLLERF--PYLKYLAAAILGFIGVKLILE 183 (183)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhC
Confidence 5555444443 357888888888899998763
No 64
>cd02436 Nodulin-21 Nodulin-21. Nodulin-21: This is a family of proteins that may be unique to certain plants. The family member in soybean is found to be nodule-specific and is abundant during nodule development. The proteins of this family thus may play a role in symbiotic nitrogen fixation.
Probab=30.19 E-value=3.6e+02 Score=23.67 Aligned_cols=40 Identities=10% Similarity=-0.110 Sum_probs=25.2
Q ss_pred hhhhhHhhhhccCCHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8300 105 VLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKM 144 (256)
Q Consensus 105 ~lsv~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~~~ 144 (256)
..+++.|..+...++..+-+....-.+.=++.|-...|-+
T Consensus 17 ~~alv~Gvaga~~~~~~illaGla~lvAga~SMa~GeYvS 56 (152)
T cd02436 17 VASLMLGVGAVCADEHAMLLSGLAGLVAGACPMAIGEFVR 56 (152)
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHhhcchhh
Confidence 4566666665556666666666666666667777766643
No 65
>PRK11715 inner membrane protein; Provisional
Probab=30.03 E-value=51 Score=33.07 Aligned_cols=87 Identities=11% Similarity=0.132 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHccCCCcchHHHHHHHHHH--hchhccchhhhhhhhhhccccccCCchhhhhhhH
Q psy8300 33 AFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALAL--MTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAF 110 (256)
Q Consensus 33 ~f~~af~~iflaElGDKTq~~a~~LA~r~~~~~Vf~G~~~al~~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~ 110 (256)
=..-+|..+|+.|+.-|..+ ||-...++|...++++ .-+.+.|=-...--.|+|. ....++
T Consensus 310 FI~LTF~~fFlfE~~~~~~i--------HpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~---------a~v~li 372 (436)
T PRK11715 310 FIALTFAAFFLFELLKKLRI--------HPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAAL---------ACVLLI 372 (436)
T ss_pred HHHHHHHHHHHHHHhcCcee--------cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH---------HHHHHH
Confidence 35568999999999887543 4556789998888765 4455666211112222332 333444
Q ss_pred h-hhhccC-CHHHHHHHHHHHHHHHHHH
Q psy8300 111 D-MAANII-PRIWTYYISTVLFIIFGLK 136 (256)
Q Consensus 111 G-~~~~~l-p~~~~~~~a~~lFi~fG~~ 136 (256)
| |+...+ +.+..-.+++++..+.|+.
T Consensus 373 ~~Y~~~vl~~~k~g~~~~~~L~~LYg~L 400 (436)
T PRK11715 373 GFYLSAVLRSWKRGLLFAAALAALYGVL 400 (436)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4 555444 4455566666666666664
No 66
>COG1971 Predicted membrane protein [Function unknown]
Probab=29.75 E-value=1.1e+02 Score=27.58 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=25.9
Q ss_pred hhhhHh-hhhccCCHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 106 LSGAFD-MAANIIPRIWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 106 lsv~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
++..+| ++.+++ .++..+++|++++.+|++.|++.+
T Consensus 152 ~G~~IG~~~g~~~-g~~ae~lgGiiLI~~G~~iL~~~~ 188 (190)
T COG1971 152 LGAIIGRKLGKFL-GKYAEILGGIILIGIGVKILLEHL 188 (190)
T ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444 233333 456789999999999999999875
No 67
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=29.63 E-value=1.9e+02 Score=28.05 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=24.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8300 115 NIIPRIWTYYISTVLFIIFGLKMLREGYK 143 (256)
Q Consensus 115 ~~lp~~~~~~~a~~lFi~fG~~~L~~~~~ 143 (256)
-.....|...++.++.+.+|+|++|...+
T Consensus 126 ~~~s~~~lE~~S~~Ll~~~G~w~~~r~lr 154 (303)
T COG2215 126 FALSEPWLELISFLLLILLGLWLLWRTLR 154 (303)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999999999998754
No 68
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=29.04 E-value=81 Score=28.03 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=28.4
Q ss_pred hhhhhHh-hhhcc--CCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300 105 VLSGAFD-MAANI--IPRIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 105 ~lsv~~G-~~~~~--lp~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
++..++| ++-+. ++-.-.++.+|++.+..|+.|+..
T Consensus 55 l~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~ 93 (201)
T TIGR00427 55 LIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSG 93 (201)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 3566677 55444 477788999999999999999965
No 69
>PRK10621 hypothetical protein; Provisional
Probab=28.62 E-value=1.1e+02 Score=27.49 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=31.4
Q ss_pred hhhhhHh-hhhccCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300 105 VLSGAFD-MAANIIPRIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 105 ~lsv~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
++++.+| ++...+|+++.+.+.+++.++.++++++.
T Consensus 88 l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 88 FVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM 124 (266)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 6778888 78899999999999999988999998864
No 70
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=28.13 E-value=1.2e+02 Score=27.40 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=21.7
Q ss_pred hhhhhHhhhhccCCHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 105 VLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 105 ~lsv~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
..+++.|..+...+.+.+-+.+..-.+.=++.|-..+|
T Consensus 22 ~~alvaG~aga~~~~~~Ill~Gla~l~Aga~SMa~G~y 59 (218)
T cd02432 22 VAGLVVGVAAATASSFTILIAGLAGLVAGALSMAAGEY 59 (218)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665444455566555555555556666666555
No 71
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=27.34 E-value=1.1e+02 Score=24.15 Aligned_cols=32 Identities=16% Similarity=0.561 Sum_probs=25.2
Q ss_pred hhHhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Q psy8300 108 GAFDMAANIIPRIWTYYISTVLFIIFGLKMLR 139 (256)
Q Consensus 108 v~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~ 139 (256)
.++|++..-.|..|.+.++|.++...|++.+-
T Consensus 27 ~~F~~~~~p~~~lwlqfl~G~~lf~~G~~Fi~ 58 (77)
T PF11118_consen 27 TVFGILFSPFPSLWLQFLAGLLLFAIGVGFIA 58 (77)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 34555556678899999999999999988663
No 72
>PRK13751 putative mercuric transport protein; Provisional
Probab=27.18 E-value=3.8e+02 Score=22.50 Aligned_cols=31 Identities=6% Similarity=0.109 Sum_probs=23.2
Q ss_pred HhhhhccCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300 110 FDMAANIIPRIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 110 ~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
+|.+...-|-|..-++.++.++.+|.|.++.
T Consensus 41 ~~~l~~lepyr~~fi~~a~~~l~~a~~~~yr 71 (116)
T PRK13751 41 IGNLTVLEPYRPIFIGAALVALFFAWRRIYR 71 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455666688888888888888888877763
No 73
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=26.77 E-value=5.3e+02 Score=24.12 Aligned_cols=85 Identities=21% Similarity=0.278 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHccCC--CcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhh
Q psy8300 29 GFIHAFVAALSVIVVSELGDKTFFIAAIMAMRHP--RVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVL 106 (256)
Q Consensus 29 ~~~~~f~~af~~iflaElGDKTq~~a~~LA~r~~--~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (256)
+.+..|..+|+.+ +=| |=-|=+.-..+++..+ ...+..|++.|++... ++
T Consensus 131 ~~~~l~~~afl~v-lRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~--------------------------~~ 182 (306)
T PF03239_consen 131 SKWALFLLAFLIV-LRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAV--------------------------VL 182 (306)
T ss_pred hhhHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH--------------------------HH
Confidence 4566777777433 344 4444444444444433 4678888888876655 55
Q ss_pred hhhHhhhhccCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8300 107 SGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREG 141 (256)
Q Consensus 107 sv~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~ 141 (256)
+.++-+....+|-+..-.+.+++.++.+.-++..+
T Consensus 183 ~~~~~~~~~~i~~~~~f~~~~~~ll~~aa~L~~~~ 217 (306)
T PF03239_consen 183 GWLLYRGLIRISLRSFFIITGVLLLLIAAGLLGVG 217 (306)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444445668888887788777777777777655
No 74
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=26.68 E-value=40 Score=26.07 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHH-------HHHhhccCCC
Q psy8300 125 ISTVLFIIFGLK-------MLREGYKMSP 146 (256)
Q Consensus 125 ~a~~lFi~fG~~-------~L~~~~~~~~ 146 (256)
+.+++|+++|.. .|..||++.|
T Consensus 2 i~~~if~ilg~li~~~k~~~LIaGyntms 30 (97)
T PF12650_consen 2 IIALIFFILGILILKGKGYFLIAGYNTMS 30 (97)
T ss_pred cHHHHHHHHHHHHHhcCcccchhhcccCC
Confidence 456667777776 3456775544
No 75
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=26.31 E-value=3.2e+02 Score=28.40 Aligned_cols=94 Identities=21% Similarity=0.334 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhHHHHHhhhhcchhhhhhhhccccccCccchhhHHHHHHHHHHHHHH
Q psy8300 120 IWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISLLSRVVIQAFT 199 (256)
Q Consensus 120 ~~~~~~a~~lFi~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~f~taF~ 199 (256)
.|.+.++++..++||+.++++|.+.--. |.. +..|.+- ...+ ...|+..++
T Consensus 6 ~~l~l~g~v~l~L~g~~~m~~Gv~~~~G---~~l---r~~L~~~----------------t~np-------~~gvl~Gi~ 56 (533)
T COG1283 6 VLLNLLGAVALLLFGIKMVGDGVQRAAG---DRL---RKILARF----------------TSNP-------ILGVLAGIV 56 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHH---HHHHHHh----------------cCCc-------HHHHHHHHH
Confidence 5788999999999999999998643221 111 1111100 0001 234555666
Q ss_pred HHHHHhhcchHHHHHHHHhhcc-----CceEEeehHHHHHHHHHHHHH
Q psy8300 200 LTFLAEWGDRSQLTTIILAARE-----DVYGVTLGGVLGHSLCTGLAV 242 (256)
Q Consensus 200 liFLAE~GDKTQLATiaLAa~~-----~p~~V~iGa~lGl~l~t~laV 242 (256)
++-+--=-+-|-+.|+++.+.. .-.+|.+|+-+|-.+.+-+-.
T Consensus 57 ~T~llQSStatt~lt~gfV~aGl~sl~~Ai~vilGANIGTt~Ta~iva 104 (533)
T COG1283 57 ATALLQSSTATTVLTIGFVAAGLLSLKQAIGVILGANIGTTVTAWIVA 104 (533)
T ss_pred HHHHHHhcchHHHHHHHHHhccccchhhhhhheeccchhHHHHHHHHH
Confidence 6666666778888999998884 357888999888776665443
No 76
>PF14007 YtpI: YtpI-like protein
Probab=26.28 E-value=73 Score=25.44 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8300 118 PRIWTYYISTVLFIIFGLKMLREGYK 143 (256)
Q Consensus 118 p~~~~~~~a~~lFi~fG~~~L~~~~~ 143 (256)
...+++++.+.+|+++|+.-++.|+|
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~~G~r 79 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLFAGIR 79 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 67888999999999999999998874
No 77
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=25.82 E-value=89 Score=26.85 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy8300 120 IWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 120 ~~~~~~a~~lFi~fG~~~L~~ 140 (256)
++++++++.+|+.+|++++.+
T Consensus 183 ~~i~~~~g~~li~~~~~l~~~ 203 (205)
T PRK10520 183 KALNKIFGSLFMLVGALLASA 203 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999998774
No 78
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=25.67 E-value=3.3e+02 Score=23.33 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHHccCCC---cchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh--hhhccCCHH-
Q psy8300 47 GDKTFFIAAIMAMRHPR---VTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD--MAANIIPRI- 120 (256)
Q Consensus 47 GDKTq~~a~~LA~r~~~---~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G--~~~~~lp~~- 120 (256)
..=..+..+--++++++ ....+|...|..+.. +.+.+| .+....|.-
T Consensus 20 PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~---------------------------~~~~~Gl~~l~~~~p~~~ 72 (205)
T PRK10520 20 PGSGAINTMSTSISHGYRGAVASIAGLQTGLAIHI---------------------------VLVGVGLGALFSQSLLAF 72 (205)
T ss_pred CchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHhHHHH
Confidence 33344555555666554 446677777776654 344444 344444543
Q ss_pred -HHHHHHHHHHHHHHHHHHHh
Q psy8300 121 -WTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 121 -~~~~~a~~lFi~fG~~~L~~ 140 (256)
.+++++++-.+++|.++++.
T Consensus 73 ~~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 73 EVLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 56888888889999999986
No 79
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=25.20 E-value=2.6e+02 Score=25.59 Aligned_cols=36 Identities=17% Similarity=0.441 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCChhhhHHHHHhhhh
Q psy8300 123 YYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRK 162 (256)
Q Consensus 123 ~~~a~~lFi~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~ 162 (256)
.....+++.+.++..++..|+- ++|+.+|.++|+++
T Consensus 401 ~~~~p~i~~~~~~~~~~~~y~l----~~~~~~~i~~~l~~ 436 (437)
T TIGR00792 401 MFAVPALFLLLAAIIIGRFYKL----TEKKHAEIVEELEQ 436 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHeeC----cHHHHHHHHHHHhc
Confidence 3445555666677666534533 13455666666653
No 80
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=24.71 E-value=2e+02 Score=30.32 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHH
Q psy8300 33 AFVAALSVIVVSELGDKTFFIAAI 56 (256)
Q Consensus 33 ~f~~af~~iflaElGDKTq~~a~~ 56 (256)
.|..-+...++..++|....+++.
T Consensus 10 ~f~~~~~~~~~~~~~~~~~~~~~~ 33 (1146)
T PRK08633 10 GFLPLLLTQFLNAFNDLGHKILIQ 33 (1146)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHH
Confidence 445555666677888875544443
No 81
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=24.39 E-value=1.3e+02 Score=25.81 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=12.0
Q ss_pred cCceEEeehHHHHHHHHHH
Q psy8300 221 EDVYGVTLGGVLGHSLCTG 239 (256)
Q Consensus 221 ~~p~~V~iGa~lGl~l~t~ 239 (256)
..+|.+++|+.+....+.+
T Consensus 107 ~g~Wl~~iG~~~~i~~~~G 125 (137)
T PF12270_consen 107 FGWWLILIGAVLLIVAVVG 125 (137)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3447778887776655444
No 82
>TIGR00893 2A0114 d-galactonate transporter.
Probab=24.29 E-value=4.6e+02 Score=22.56 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=11.0
Q ss_pred hhccCCHHHHHHHHHHHHHHHHH
Q psy8300 113 AANIIPRIWTYYISTVLFIIFGL 135 (256)
Q Consensus 113 ~~~~lp~~~~~~~a~~lFi~fG~ 135 (256)
+.+...-++..++.+++.+..++
T Consensus 141 l~~~~~~~~~~~~~~~~~~~~~~ 163 (399)
T TIGR00893 141 ILIHFSWQWAFIIEGVLGIIWGV 163 (399)
T ss_pred HHHhCCchHHHHHHHHHHHHHHH
Confidence 34444555555555554444433
No 83
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=23.73 E-value=1.6e+02 Score=21.61 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q psy8300 121 WTYYISTVLFIIFGLKMLREGYK 143 (256)
Q Consensus 121 ~~~~~a~~lFi~fG~~~L~~~~~ 143 (256)
....+.++.|..+|...+.-+..
T Consensus 2 ~G~~~~givy~~lg~~a~~~a~~ 24 (73)
T PF06724_consen 2 IGYAARGIVYGALGYLALQAALG 24 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 34677899999999999988874
No 84
>KOG2736|consensus
Probab=23.60 E-value=2.1e+02 Score=28.72 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=32.7
Q ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHccCCC---cchHHHHHHHHHHhc
Q psy8300 28 LGFIHAFVAALSVIVVSELGDKTFFIAAIMAMRHPR---VTVFIGAIAALALMT 78 (256)
Q Consensus 28 ~~~~~~f~~af~~iflaElGDKTq~~a~~LA~r~~~---~~Vf~G~~~al~~~t 78 (256)
..++++++++..+| +=++=-|++..++.=.|+.+ -|+.+-+++-|..++
T Consensus 64 ~k~l~sl~N~li~i--~viv~~Tfllv~ly~~rfyk~ik~wl~~Ss~llLf~~s 115 (406)
T KOG2736|consen 64 QKLLDSLLNALIMI--SVIVVMTFLLVVLYKYRFYKFIKAWLILSSLLLLFLFS 115 (406)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567887766544 44677899999999888766 345555555555555
No 85
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=23.25 E-value=71 Score=26.30 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 120 IWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 120 ~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
.+..++.|.+.+..|+..+.-++
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~l~~ 107 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYIILGF 107 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888887766544
No 86
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=22.65 E-value=1.5e+02 Score=30.31 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q psy8300 117 IPRIWTYYISTVLFIIFGLKML 138 (256)
Q Consensus 117 lp~~~~~~~a~~lFi~fG~~~L 138 (256)
+-..|..++.+++|+++|+.++
T Consensus 241 ~q~~~~~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 241 LQHPYVLIGLSILFVLLALSMF 262 (571)
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 3345778888999999999986
No 87
>PRK01637 hypothetical protein; Reviewed
Probab=22.28 E-value=1e+02 Score=28.34 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=9.8
Q ss_pred cchHHHHHHHHHHhc
Q psy8300 64 VTVFIGAIAALALMT 78 (256)
Q Consensus 64 ~~Vf~G~~~al~~~t 78 (256)
..++.|++.+.++..
T Consensus 202 r~~~~Ga~~a~~~w~ 216 (286)
T PRK01637 202 RHALVGALVAALLFE 216 (286)
T ss_pred HHHHHHHHHHHHHHH
Confidence 446777777666665
No 88
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=21.83 E-value=4.6e+02 Score=21.68 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.6
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300 114 ANIIPRIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 114 ~~~lp~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
...=|-|..-+..+++++.+|.|.++.
T Consensus 45 s~lepyRp~fi~~tl~~lg~a~~~~yr 71 (116)
T PF02411_consen 45 SWLEPYRPYFIALTLLFLGYAFWRLYR 71 (116)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHc
Confidence 445588888888899999999888874
No 89
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=21.58 E-value=2.9e+02 Score=25.77 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=11.8
Q ss_pred eehHHHHHHHHHHHHHHHhHHhhhcc
Q psy8300 227 TLGGVLGHSLCTGLAVIGGRFIAQRI 252 (256)
Q Consensus 227 ~iGa~lGl~l~t~laVl~G~~l~~~I 252 (256)
...=..|.++.+.+ +++...+.+|=
T Consensus 223 vFs~f~GIfltSt~-~F~~Y~~~~rn 247 (254)
T PF07857_consen 223 VFSHFSGIFLTSTV-YFVIYCIIKRN 247 (254)
T ss_pred eHHHHhhHHHHHHH-HHHHHHHhhcC
Confidence 44445555555544 34444444443
No 90
>PF06553 BNIP3: BNIP3; InterPro: IPR010548 This family consists of several mammalian specific BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 or BNIP3 sequences. BNIP3 belongs to the Bcl-2 homology 3 (BH3)-only family, a Bcl-2-related family possessing an atypical Bcl-2 homology 3 (BH3) domain, which regulates PCD from mitochondrial sites by selective Bcl-2/Bcl-XL interactions. BNIP3 family members contain a C-terminal transmembrane domain that is required for their mitochondrial localisation, homodimerisation, as well as regulation of their pro-apoptotic activities. BNIP3-mediated apoptosis has been reported to be independent of caspase activation and cytochrome c release and is characterised by early plasma membrane and mitochondrial damage, prior to the appearance of chromatin condensation or DNA fragmentation [].; GO: 0043065 positive regulation of apoptosis, 0005740 mitochondrial envelope, 0016021 integral to membrane; PDB: 2KA1_B 2KA2_A 2J5D_A.
Probab=21.25 E-value=84 Score=28.59 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=17.9
Q ss_pred ehHHHHHHHHHHHHHHHhHHhhh
Q psy8300 228 LGGVLGHSLCTGLAVIGGRFIAQ 250 (256)
Q Consensus 228 iGa~lGl~l~t~laVl~G~~l~~ 250 (256)
..-++-|+++.++||++|++++.
T Consensus 169 pslllS~lL~~GlGiyIgkRl~t 191 (197)
T PF06553_consen 169 PSLLLSHLLGLGLGIYIGKRLAT 191 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcccEEEEeccccc
Confidence 34467789999999999998863
No 91
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=21.08 E-value=1.2e+02 Score=26.13 Aligned_cols=88 Identities=7% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHccCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh-hhhccCCH--HHHHHH
Q psy8300 49 KTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD-MAANIIPR--IWTYYI 125 (256)
Q Consensus 49 KTq~~a~~LA~r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G-~~~~~lp~--~~~~~~ 125 (256)
+++.-..+...-||+-++|..++....+-. +++.....+...+.+-....-....-+..| .+.+.+.+ ++++++
T Consensus 105 ~~f~~G~~~~l~NPKa~lf~~a~~~~f~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 181 (195)
T PRK10323 105 ISFWASFALQFVNVKIILYGITALSTFVLP---QTQALSWVVGVSVLLAMIGTFGNVCWALAGHLFQRLFRQYGRQLNIV 181 (195)
T ss_pred hhHHHHHHHHhHCHHHHHHHHHHHHHhhCc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q psy8300 126 STVLFIIFGLKMLR 139 (256)
Q Consensus 126 a~~lFi~fG~~~L~ 139 (256)
++++|+.+|+++.|
T Consensus 182 ~g~~l~~~a~~l~~ 195 (195)
T PRK10323 182 LALLLVYCAVRIFY 195 (195)
T ss_pred HHHHHHHHHHHHhC
No 92
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.06 E-value=93 Score=25.34 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy8300 120 IWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 120 ~~~~~~a~~lFi~fG~~~L~~ 140 (256)
++...+.++++++.|.+.++-
T Consensus 96 e~~~~l~~l~~l~~~~~~~~~ 116 (135)
T PF04246_consen 96 ELWAILGGLLGLALGFLILRL 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888887764
No 93
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=20.71 E-value=2.2e+02 Score=26.20 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=22.2
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 113 AANIIPRIWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 113 ~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
+.|-+|+.|...+-+...+.++-|.+|-+.
T Consensus 22 ~~n~~P~ww~~~f~~~i~~~~~y~~~yp~~ 51 (285)
T TIGR00782 22 YDNPLPRWWLWTFYATIVWGFGYLVAYPAW 51 (285)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 678899999977766665566667777555
No 94
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=20.61 E-value=3.1e+02 Score=23.59 Aligned_cols=37 Identities=5% Similarity=-0.102 Sum_probs=17.8
Q ss_pred hhhhhHhhhhccCCHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 105 VLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 105 ~lsv~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
.++++.|-... .+...+-......-+.-++.|-...|
T Consensus 14 ~~giv~G~~~~-~~~~~i~~~Gla~~vA~a~Sma~GeY 50 (169)
T TIGR00267 14 ALGVVGGASGS-VDNYVIILAGLGGGVANGMSNAFGAF 50 (169)
T ss_pred HHHHHHHhhcc-CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556662222 34434433333444455666666555
No 95
>PRK09304 arginine exporter protein; Provisional
Probab=20.57 E-value=4.7e+02 Score=22.62 Aligned_cols=36 Identities=11% Similarity=0.296 Sum_probs=24.1
Q ss_pred hhhhHh--hhhccCCHH--HHHHHHHHHHHHHHHHHHHhh
Q psy8300 106 LSGAFD--MAANIIPRI--WTYYISTVLFIIFGLKMLREG 141 (256)
Q Consensus 106 lsv~~G--~~~~~lp~~--~~~~~a~~lFi~fG~~~L~~~ 141 (256)
..+++| .+....|.- .+++++++-.+++|..+++..
T Consensus 52 ~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~rs~ 91 (207)
T PRK09304 52 CAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFKTA 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455 344444543 458888888899999999864
No 96
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=20.33 E-value=4.6e+02 Score=24.31 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHH
Q psy8300 35 VAALSVIVVSELGDKTFFIAAIM 57 (256)
Q Consensus 35 ~~af~~iflaElGDKTq~~a~~L 57 (256)
..-+...+++.+||.....++..
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~ 28 (393)
T PRK11195 6 YAIMAAQFFSALADNALLFAAIA 28 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677788888876555443
No 97
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=20.21 E-value=2.6e+02 Score=26.92 Aligned_cols=75 Identities=27% Similarity=0.305 Sum_probs=48.4
Q ss_pred HHHHHHhcCcHHHH---HHHHHHccCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhc
Q psy8300 39 SVIVVSELGDKTFF---IAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAAN 115 (256)
Q Consensus 39 ~~iflaElGDKTq~---~a~~LA~r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~ 115 (256)
..+..-|+=|=.|= +.++.|..++++.|+.|.+.|...+- .+--++..+.+
T Consensus 193 ~vli~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR--------------------------~lyf~l~~ll~ 246 (302)
T TIGR03718 193 LVLVLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLR--------------------------SLYFLLAGLLE 246 (302)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHH--------------------------HHHHHHHHHHH
Confidence 44555566676653 34566666678889998887765443 22222232223
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8300 116 IIPRIWTYYISTVLFIIFGLKMLREG 141 (256)
Q Consensus 116 ~lp~~~~~~~a~~lFi~fG~~~L~~~ 141 (256)
+. .+.++.+++...+.|++|+.++
T Consensus 247 rf--~~L~~~~a~iL~fIGvkmll~~ 270 (302)
T TIGR03718 247 RF--HYLKYGLAVILVFIGVKMLLHA 270 (302)
T ss_pred Hh--HHHHHHHHHHHHHHHHHHHHhh
Confidence 22 4678888899999999999974
Done!