Query psy8300
Match_columns 256
No_of_seqs 191 out of 1186
Neff 4.0
Searched_HMMs 29240
Date Sat Aug 17 00:03:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlf_G Maltose transport syste 30.6 2.4E+02 0.0082 23.6 9.7 26 190-215 211-236 (296)
2 2i68_A Protein EMRE; transmemb 28.0 1E+02 0.0036 24.6 5.5 33 105-140 69-103 (137)
3 2j5d_A BNIP3 TM, BCL2/adenovir 19.8 86 0.0029 21.5 2.9 18 232-249 26-43 (45)
4 4hkr_A Calcium release-activat 15.8 1.3E+02 0.0044 26.6 3.9 19 29-47 30-48 (214)
5 3mk7_C Cytochrome C oxidase, C 12.4 2.9E+02 0.01 24.2 5.3 29 113-141 50-78 (311)
6 3k6g_D Telomeric repeat-bindin 11.8 38 0.0013 22.9 -0.5 17 133-149 9-25 (42)
7 2w2e_A AQY1, aquaporin, aquapo 11.6 2.3E+02 0.0077 25.2 4.3 24 230-253 84-107 (279)
8 3o7q_A L-fucose-proton symport 11.1 6.9E+02 0.024 21.0 9.1 14 55-68 82-95 (438)
9 3tuo_A DNA-binding protein SAT 10.5 1.3E+02 0.0044 23.9 2.0 15 4-18 66-80 (105)
10 2lx0_A Membrane fusion protein 8.1 4.3E+02 0.015 16.4 3.5 16 124-139 12-27 (32)
No 1
>3rlf_G Maltose transport system permease protein MALG; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} SCOP: f.58.1.1 PDB: 3fh6_G 2r6g_G* 3puv_G* 3pux_G* 3puy_G* 3puz_G* 3pv0_G* 3puw_G*
Probab=30.60 E-value=2.4e+02 Score=23.64 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHH
Q psy8300 190 LSRVVIQAFTLTFLAEWGDRSQLTTI 215 (256)
Q Consensus 190 ~~~~f~taF~liFLAE~GDKTQLATi 215 (256)
..+.+..++.+.|..=|+|=.....+
T Consensus 211 ~~p~i~~~~~~~~~~~~~~~~~~~~l 236 (296)
T 3rlf_G 211 SVPILAVVFILSFIAAITEVPVASLL 236 (296)
T ss_dssp HHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888777776654333
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=27.96 E-value=1e+02 Score=24.57 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=17.8
Q ss_pred hhhhhHhh--hhccCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300 105 VLSGAFDM--AANIIPRIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 105 ~lsv~~G~--~~~~lp~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
++++++|+ +.+.++. ..+.|+++++.|+..+..
T Consensus 69 v~~~l~g~l~lgE~ls~---~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 69 VLISLLSWGFFGQRLDL---PAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHC---------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCH---HHHHHHHHHHHHHHHHhc
Confidence 34455552 3454432 346778888899998864
No 3
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=19.79 E-value=86 Score=21.45 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhHHhh
Q psy8300 232 LGHSLCTGLAVIGGRFIA 249 (256)
Q Consensus 232 lGl~l~t~laVl~G~~l~ 249 (256)
.-|+++.++++.+|++++
T Consensus 26 ~shiL~~GlgIyIGkRLs 43 (45)
T 2j5d_A 26 LSHLLAIGLGIYIGRRLT 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcceEEeeeeec
Confidence 457788888888888876
No 4
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=15.79 E-value=1.3e+02 Score=26.57 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHHhcC
Q psy8300 29 GFIHAFVAALSVIVVSELG 47 (256)
Q Consensus 29 ~~~~~f~~af~~iflaElG 47 (256)
+..++.++.|.++.+-|+.
T Consensus 30 S~lSALLaGFAMVAmVE~q 48 (214)
T 4hkr_A 30 SKTSALLSGFAMVAMVEVQ 48 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccceeeEEEEe
Confidence 5577999999999999995
No 5
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=12.44 E-value=2.9e+02 Score=24.16 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=21.1
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8300 113 AANIIPRIWTYYISTVLFIIFGLKMLREG 141 (256)
Q Consensus 113 ~~~~lp~~~~~~~a~~lFi~fG~~~L~~~ 141 (256)
+.+.+|+.|+..+.+.+...++-+.++-+
T Consensus 50 ~~nplp~ww~~~f~~~iv~~~~y~~~yp~ 78 (311)
T 3mk7_C 50 YDNPLPRWWFLLFIGTLVFGILYLVLYPG 78 (311)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 57889999997776666656666666653
No 6
>3k6g_D Telomeric repeat-binding factor 2; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=11.81 E-value=38 Score=22.87 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=12.4
Q ss_pred HHHHHHHhhccCCCCCC
Q psy8300 133 FGLKMLREGYKMSPNEG 149 (256)
Q Consensus 133 fG~~~L~~~~~~~~d~~ 149 (256)
||+.+|++++|+=++..
T Consensus 9 ~Gi~tLk~AFK~Ls~sq 25 (42)
T 3k6g_D 9 IGMMTLKAAFKTLSGAQ 25 (42)
T ss_dssp CCHHHHHHHHHHHHCCT
T ss_pred eeHHHHHHHHHHhccCC
Confidence 68889999887655443
No 7
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=11.63 E-value=2.3e+02 Score=25.20 Aligned_cols=24 Identities=33% Similarity=0.474 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhhccC
Q psy8300 230 GVLGHSLCTGLAVIGGRFIAQRIS 253 (256)
Q Consensus 230 a~lGl~l~t~laVl~G~~l~~~Ip 253 (256)
..++..++-+++|..+-+...++|
T Consensus 84 ~~l~iala~Glav~~~v~~~g~iS 107 (279)
T 2w2e_A 84 QLIMISFGFGFGVMVGVFITYRVS 107 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344555556666666655554443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=11.15 E-value=6.9e+02 Score=20.97 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=8.2
Q ss_pred HHHHccCCCcchHH
Q psy8300 55 AIMAMRHPRVTVFI 68 (256)
Q Consensus 55 ~~LA~r~~~~~Vf~ 68 (256)
-.++-|++++.+++
T Consensus 82 G~l~dr~g~r~~l~ 95 (438)
T 3o7q_A 82 GILMKKLSYKAGII 95 (438)
T ss_dssp HHHHHHSCHHHHHH
T ss_pred HHHHHHhcchHHHH
Confidence 34677887654433
No 9
>3tuo_A DNA-binding protein SATB1; 1.70A {Homo sapiens}
Probab=10.50 E-value=1.3e+02 Score=23.88 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=13.0
Q ss_pred ceecCCCCcccccCC
Q psy8300 4 LKIDNVSSVSLLQHH 18 (256)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (256)
++|.||+|+++-+=.
T Consensus 66 I~v~nWkPLp~~~it 80 (105)
T 3tuo_A 66 IQVGKWNPVPLSYVT 80 (105)
T ss_dssp EEETTSCCBCGGGTC
T ss_pred EEEccccCcCHHHcC
Confidence 579999999998873
No 10
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=8.11 E-value=4.3e+02 Score=16.45 Aligned_cols=16 Identities=19% Similarity=0.667 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8300 124 YISTVLFIIFGLKMLR 139 (256)
Q Consensus 124 ~~a~~lFi~fG~~~L~ 139 (256)
.++-.-|+.||.|...
T Consensus 12 lvalltflafgfwlfk 27 (32)
T 2lx0_A 12 LVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455678999999764
Done!