Query psy8300
Match_columns 256
No_of_seqs 191 out of 1186
Neff 4.0
Searched_HMMs 13730
Date Sat Aug 17 00:03:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8300.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8300hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 19.6 43 0.0031 26.3 3.8 19 120-138 183-201 (447)
2 d2r6gg1 f.58.1.1 (G:7-296) Mal 13.2 2.8E+02 0.02 21.3 8.0 23 188-210 203-225 (290)
3 d1pv7a_ f.38.1.2 (A:) Lactose 12.2 1.7E+02 0.012 21.6 5.4 32 108-139 367-398 (417)
4 d1kqfb2 f.23.22.1 (B:246-290) 10.7 52 0.0038 20.8 1.5 28 123-150 13-40 (45)
5 d1m0ka_ f.13.1.1 (A:) Bacterio 7.1 4.9E+02 0.036 20.0 8.4 35 108-142 115-152 (227)
6 d1jb0i_ f.23.17.1 (I:) Subunit 6.1 1.3E+02 0.0094 18.2 1.8 28 112-139 5-33 (38)
7 d1xioa_ f.13.1.1 (A:) Sensory 4.8 6.3E+02 0.046 19.0 6.0 36 105-140 110-148 (226)
8 d1otsa_ f.20.1.1 (A:) Clc chlo 3.8 9.5E+02 0.069 19.5 7.6 29 49-77 324-356 (444)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 3.8 7.6E+02 0.055 18.4 9.7 16 107-122 76-91 (447)
10 d1h2sa_ f.13.1.1 (A:) Sensory 3.8 7.1E+02 0.051 18.8 5.5 33 108-140 109-143 (225)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=19.61 E-value=43 Score=26.27 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8300 120 IWTYYISTVLFIIFGLKML 138 (256)
Q Consensus 120 ~~~~~~a~~lFi~fG~~~L 138 (256)
++..++.+++.++.++..+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~ 201 (447)
T d1pw4a_ 183 HAALYMPAFCAILVALFAF 201 (447)
T ss_dssp TTCTHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHH
Confidence 3344455555544554443
No 2
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=13.22 E-value=2.8e+02 Score=21.33 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcchH
Q psy8300 188 SLLSRVVIQAFTLTFLAEWGDRS 210 (256)
Q Consensus 188 ~~~~~~f~taF~liFLAE~GDKT 210 (256)
....+....++++.|+.-|+|=.
T Consensus 203 Pl~~p~i~~~~il~fi~~~~~f~ 225 (290)
T d2r6gg1 203 PLSVPILAVVFILSFIAAITEVP 225 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCH
T ss_pred HhhhhhhhhHHHHHhhhhccccc
Confidence 34568888999999999888853
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=12.15 E-value=1.7e+02 Score=21.60 Aligned_cols=32 Identities=13% Similarity=-0.065 Sum_probs=18.7
Q ss_pred hhHhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Q psy8300 108 GAFDMAANIIPRIWTYYISTVLFIIFGLKMLR 139 (256)
Q Consensus 108 v~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~ 139 (256)
.+.|++.+....+...++.+++.+..++..++
T Consensus 367 ~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666666665555555444
No 4
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=10.69 E-value=52 Score=20.84 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCh
Q psy8300 123 YYISTVLFIIFGLKMLREGYKMSPNEGQ 150 (256)
Q Consensus 123 ~~~a~~lFi~fG~~~L~~~~~~~~d~~~ 150 (256)
+.++.+.|..-.+..++.-..-.||..+
T Consensus 13 Kpl~~~~~~~~~~~~~fHYv~vGPn~v~ 40 (45)
T d1kqfb2 13 KPLAAAGFIATFAGLIFHYIGIGPNKEV 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCBCSC
T ss_pred HHHHHHHHHHHHHHHHHhhheeCCCccc
Confidence 4444444443333333332233466443
No 5
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=7.08 E-value=4.9e+02 Score=20.01 Aligned_cols=35 Identities=9% Similarity=0.188 Sum_probs=21.7
Q ss_pred hhHhhhhccCC---HHHHHHHHHHHHHHHHHHHHHhhc
Q psy8300 108 GAFDMAANIIP---RIWTYYISTVLFIIFGLKMLREGY 142 (256)
Q Consensus 108 v~~G~~~~~lp---~~~~~~~a~~lFi~fG~~~L~~~~ 142 (256)
++.|++++..+ .+++.++.++++.+.-++.++.+.
T Consensus 115 i~~G~~g~~~~~~~~k~~~~~is~~~f~~i~~~l~~~~ 152 (227)
T d1m0ka_ 115 IGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGF 152 (227)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554432 366777777777777777777643
No 6
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=6.11 E-value=1.3e+02 Score=18.25 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=18.5
Q ss_pred hhhccCCHHHHHHHHHHHHH-HHHHHHHH
Q psy8300 112 MAANIIPRIWTYYISTVLFI-IFGLKMLR 139 (256)
Q Consensus 112 ~~~~~lp~~~~~~~a~~lFi-~fG~~~L~ 139 (256)
|.+.++|-..+-.++-.+.. .+|+..++
T Consensus 5 yAAsyLPwI~iPvv~wl~p~vvMglLFiy 33 (38)
T d1jb0i_ 5 YAASFLPWIFIPVVCWLMPTVVMGLLFLY 33 (38)
T ss_dssp STTTTHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hHHHhcchhHHHHHHHHHHHHHHHHHhee
Confidence 66777777777666655554 56766665
No 7
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=4.82 E-value=6.3e+02 Score=18.97 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=20.7
Q ss_pred hhhhhHhhhhccCCH---HHHHHHHHHHHHHHHHHHHHh
Q psy8300 105 VLSGAFDMAANIIPR---IWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 105 ~lsv~~G~~~~~lp~---~~~~~~a~~lFi~fG~~~L~~ 140 (256)
.+-++.|++++.-+. ++..+..++.+.++-++.++.
T Consensus 110 ~~Mi~~G~~g~~~~~~~~~~~~f~~~~~~f~~i~y~l~~ 148 (226)
T d1xioa_ 110 IVVITSGLIADLSERDWVRYLWYICGVCAFLIILWGIWN 148 (226)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666554432 556666666666666666664
No 8
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=3.84 E-value=9.5e+02 Score=19.55 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=21.5
Q ss_pred HHHHHHHHHHccCCC----cchHHHHHHHHHHh
Q psy8300 49 KTFFIAAIMAMRHPR----VTVFIGAIAALALM 77 (256)
Q Consensus 49 KTq~~a~~LA~r~~~----~~Vf~G~~~al~~~ 77 (256)
|-.+.++.+++-.+- |..++|+..+.++.
T Consensus 324 K~~~t~~t~~~G~~GG~f~P~l~iGa~~G~~~~ 356 (444)
T d1otsa_ 324 RVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG 356 (444)
T ss_dssp HHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCeehHHHHHHHHHHHHHH
Confidence 666667777777664 77899998887763
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.83 E-value=7.6e+02 Score=18.36 Aligned_cols=16 Identities=0% Similarity=-0.317 Sum_probs=9.5
Q ss_pred hhhHhhhhccCCHHHH
Q psy8300 107 SGAFDMAANIIPRIWT 122 (256)
Q Consensus 107 sv~~G~~~~~lp~~~~ 122 (256)
+...|+++++..++.+
T Consensus 76 ~~~~G~l~Dr~g~r~~ 91 (447)
T d1pw4a_ 76 KFIMGSVSDRSNPRVF 91 (447)
T ss_dssp HHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHcCchHH
Confidence 3455566666666654
No 10
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=3.81 E-value=7.1e+02 Score=18.78 Aligned_cols=33 Identities=6% Similarity=-0.042 Sum_probs=19.8
Q ss_pred hhHhhhhccC--CHHHHHHHHHHHHHHHHHHHHHh
Q psy8300 108 GAFDMAANII--PRIWTYYISTVLFIIFGLKMLRE 140 (256)
Q Consensus 108 v~~G~~~~~l--p~~~~~~~a~~lFi~fG~~~L~~ 140 (256)
++.|++++.. +.++.-+..++++.++-++.++.
T Consensus 109 iv~G~~g~~~~~~~~~~~f~~s~~~~~~i~y~l~~ 143 (225)
T d1h2sa_ 109 MLAGFAGAMVPGIERYALFGMGAVAFLGLVYYLVG 143 (225)
T ss_dssp HHHHHHHHHCCSTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 3445544433 46777777666666666676664
Done!