RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8300
         (256 letters)



>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
           [TaxId: 274]}
          Length = 191

 Score = 26.4 bits (57), Expect = 2.6
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 171 ALTGDVESGKSYQAQTISLLSRVVIQA 197
            +TG++ SGKS  A  +      V+  
Sbjct: 7   GITGNIGSGKSTVAALLRSWGYPVLDL 33


>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio
           cholerae [TaxId: 666]}
          Length = 401

 Score = 26.7 bits (58), Expect = 2.7
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 17  HHSSTESPRGDLGFIHAFVAAL----SVIVVSELGDKTFFIAAI-MAMRHPRVTVFIGAI 71
              +  +PR D+ F     A L     V++V E+ D      A+  ++    V   +   
Sbjct: 203 IGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTN 262

Query: 72  AALALMTKFFHHEM 85
            A+  +T+     +
Sbjct: 263 TAVGAVTRLRDMGI 276


>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 222

 Score = 26.1 bits (57), Expect = 3.6
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 151 EELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISLLSR 192
           E ++EVQ+++ + +++  +E L   VE  + Y         +
Sbjct: 33  EHIDEVQNEIDRLNEQASEEIL--KVE--QKYNKLRQPFFQK 70


>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 503

 Score = 26.6 bits (57), Expect = 4.0
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 135 LKMLREGYKMSPNEGQEELEEVQSDLRK--RDDEFEK 169
               +   + S +E +   +  Q +LRK  RD+   K
Sbjct: 7   RTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAK 43


>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
           [TaxId: 562]}
          Length = 208

 Score = 25.6 bits (55), Expect = 5.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 171 ALTGDVESGKSYQAQTISLLSRVVIQA 197
           ALTG + SGKS  A   + L   VI A
Sbjct: 7   ALTGGIGSGKSTVANAFADLGINVIDA 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 933,185
Number of extensions: 41499
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 10
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.4 bits)