Query psy8301
Match_columns 157
No_of_seqs 154 out of 1311
Neff 7.9
Searched_HMMs 29240
Date Sat Aug 17 00:04:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nk2_P Homeobox protein VND; h 99.9 5E-22 1.7E-26 129.1 10.4 66 4-69 6-71 (77)
2 2dms_A Homeobox protein OTX2; 99.9 3E-22 1E-26 131.1 8.4 64 4-67 4-67 (80)
3 2dmq_A LIM/homeobox protein LH 99.9 7E-22 2.4E-26 129.2 10.1 64 5-68 5-68 (80)
4 2h1k_A IPF-1, pancreatic and d 99.9 4E-22 1.4E-26 124.8 8.5 59 7-65 3-61 (63)
5 2hdd_A Protein (engrailed home 99.9 2.5E-22 8.6E-27 125.0 7.5 58 7-64 3-60 (61)
6 1zq3_P PRD-4, homeotic bicoid 99.9 6.6E-22 2.3E-26 125.7 9.5 63 7-69 2-64 (68)
7 2cue_A Paired box protein PAX6 99.9 5.5E-22 1.9E-26 129.8 8.9 66 5-70 5-70 (80)
8 1puf_A HOX-1.7, homeobox prote 99.9 9.7E-22 3.3E-26 127.8 9.9 66 3-68 9-74 (77)
9 1ig7_A Homeotic protein MSX-1; 99.9 6E-22 2.1E-26 122.0 8.5 57 8-64 1-57 (58)
10 2dmt_A Homeobox protein BARH-l 99.9 3.6E-22 1.2E-26 130.7 7.5 62 4-65 14-75 (80)
11 2dmu_A Homeobox protein goosec 99.9 7.7E-22 2.6E-26 126.0 8.8 61 5-65 5-65 (70)
12 1fjl_A Paired protein; DNA-bin 99.9 9.3E-22 3.2E-26 129.0 9.3 64 4-67 15-78 (81)
13 1ahd_P Antennapedia protein mu 99.9 4E-22 1.4E-26 126.7 7.2 61 7-67 2-62 (68)
14 1ftt_A TTF-1 HD, thyroid trans 99.9 6.5E-22 2.2E-26 125.7 8.0 61 7-67 2-62 (68)
15 1jgg_A Segmentation protein EV 99.9 7.5E-22 2.6E-26 122.4 7.7 58 8-65 2-59 (60)
16 2cra_A Homeobox protein HOX-B1 99.9 4.2E-22 1.4E-26 127.2 6.7 61 5-65 5-65 (70)
17 3a01_A Homeodomain-containing 99.9 1.2E-21 3.9E-26 131.8 9.0 66 4-69 14-79 (93)
18 2vi6_A Homeobox protein nanog; 99.9 3.3E-22 1.1E-26 124.8 5.8 59 6-64 2-60 (62)
19 2da3_A Alpha-fetoprotein enhan 99.9 6.8E-22 2.3E-26 129.2 7.1 62 4-65 14-75 (80)
20 2da1_A Alpha-fetoprotein enhan 99.9 8.1E-22 2.8E-26 125.8 7.2 61 5-65 5-65 (70)
21 1akh_A Protein (mating-type pr 99.9 6.2E-22 2.1E-26 123.1 6.5 60 4-63 2-61 (61)
22 1bw5_A ISL-1HD, insulin gene e 99.9 6.1E-22 2.1E-26 125.1 6.5 60 6-65 2-61 (66)
23 2e1o_A Homeobox protein PRH; D 99.9 2.3E-21 7.9E-26 123.8 9.2 62 5-66 5-66 (70)
24 2hi3_A Homeodomain-only protei 99.9 3E-21 1E-25 124.3 9.7 61 7-67 2-63 (73)
25 2da2_A Alpha-fetoprotein enhan 99.9 9.6E-22 3.3E-26 125.5 7.3 61 5-65 5-65 (70)
26 2kt0_A Nanog, homeobox protein 99.9 3E-22 1E-26 132.2 5.0 63 4-66 19-81 (84)
27 1yz8_P Pituitary homeobox 2; D 99.9 5.6E-22 1.9E-26 126.0 5.9 62 6-67 2-63 (68)
28 2da4_A Hypothetical protein DK 99.9 1E-21 3.5E-26 128.5 6.9 62 4-65 5-70 (80)
29 2m0c_A Homeobox protein arista 99.9 1.1E-21 3.6E-26 126.7 6.8 65 3-67 5-69 (75)
30 2l7z_A Homeobox protein HOX-A1 99.9 2.2E-21 7.5E-26 124.9 8.2 61 5-65 5-65 (73)
31 2djn_A Homeobox protein DLX-5; 99.9 7.9E-22 2.7E-26 125.9 6.0 60 5-64 5-64 (70)
32 1uhs_A HOP, homeodomain only p 99.8 4.4E-21 1.5E-25 123.1 9.3 60 8-67 2-62 (72)
33 3rkq_A Homeobox protein NKX-2. 99.8 2.6E-21 9.1E-26 118.9 7.6 57 7-63 2-58 (58)
34 3a02_A Homeobox protein arista 99.8 2.2E-21 7.7E-26 120.2 6.7 58 10-67 2-59 (60)
35 2k40_A Homeobox expressed in E 99.8 3.5E-21 1.2E-25 121.9 7.7 60 7-66 1-60 (67)
36 1wh5_A ZF-HD homeobox family p 99.8 9.8E-22 3.3E-26 128.7 5.1 60 5-64 15-78 (80)
37 1b8i_A Ultrabithorax, protein 99.8 3.1E-21 1.1E-25 126.6 7.5 61 5-65 18-78 (81)
38 3a03_A T-cell leukemia homeobo 99.8 4.9E-21 1.7E-25 117.2 7.8 54 12-65 2-55 (56)
39 2r5y_A Homeotic protein sex co 99.8 4E-21 1.4E-25 127.9 7.5 61 5-65 26-86 (88)
40 2ecc_A Homeobox and leucine zi 99.8 7.5E-21 2.6E-25 122.8 8.3 59 9-67 5-63 (76)
41 1b72_A Protein (homeobox prote 99.8 9.1E-21 3.1E-25 128.3 8.3 62 6-67 33-94 (97)
42 2cuf_A FLJ21616 protein; homeo 99.8 2.4E-20 8.2E-25 125.8 9.6 64 5-68 5-83 (95)
43 1wh7_A ZF-HD homeobox family p 99.8 1.4E-21 4.8E-26 127.9 2.5 60 4-64 14-78 (80)
44 2ly9_A Zinc fingers and homeob 99.8 2E-20 6.8E-25 120.6 7.2 61 6-66 5-65 (74)
45 2da5_A Zinc fingers and homeob 99.8 2.2E-20 7.6E-25 120.8 7.1 59 8-66 8-66 (75)
46 1x2n_A Homeobox protein pknox1 99.8 5.6E-20 1.9E-24 118.2 8.9 61 5-65 5-68 (73)
47 1wi3_A DNA-binding protein SAT 99.8 3.5E-20 1.2E-24 116.0 7.6 58 4-61 4-62 (71)
48 2dn0_A Zinc fingers and homeob 99.8 1.1E-20 3.6E-25 122.6 5.5 60 7-66 8-67 (76)
49 1puf_B PRE-B-cell leukemia tra 99.8 5.7E-20 1.9E-24 118.1 8.6 60 7-66 1-63 (73)
50 2ecb_A Zinc fingers and homeob 99.8 4.2E-20 1.4E-24 123.0 7.9 54 13-66 17-70 (89)
51 3nar_A ZHX1, zinc fingers and 99.8 3.4E-20 1.2E-24 125.3 7.2 61 5-65 23-83 (96)
52 2da6_A Hepatocyte nuclear fact 99.8 1E-19 3.5E-24 123.5 9.5 66 4-69 3-89 (102)
53 1du6_A PBX1, homeobox protein 99.8 1.7E-20 5.8E-25 117.7 4.5 59 6-64 2-63 (64)
54 1k61_A Mating-type protein alp 99.8 8.9E-20 3E-24 112.9 7.6 55 10-64 1-58 (60)
55 1mnm_C Protein (MAT alpha-2 tr 99.8 8.1E-20 2.8E-24 121.3 7.4 59 5-63 25-86 (87)
56 1b72_B Protein (PBX1); homeodo 99.8 1.3E-19 4.5E-24 120.2 8.3 60 8-67 2-64 (87)
57 2cqx_A LAG1 longevity assuranc 99.8 3.3E-20 1.1E-24 119.1 5.0 59 6-64 7-66 (72)
58 2dmn_A Homeobox protein TGIF2L 99.8 3.7E-19 1.3E-23 117.2 9.6 63 5-67 5-70 (83)
59 3nau_A Zinc fingers and homeob 99.8 2.6E-19 8.8E-24 112.1 7.6 53 14-66 11-63 (66)
60 1au7_A Protein PIT-1, GHF-1; c 99.8 1.1E-19 3.9E-24 131.4 6.6 61 4-64 84-144 (146)
61 2xsd_C POU domain, class 3, tr 99.8 1.2E-19 4E-24 133.7 6.3 63 4-66 96-158 (164)
62 3d1n_I POU domain, class 6, tr 99.8 2.2E-19 7.7E-24 130.5 7.7 61 4-64 90-150 (151)
63 1e3o_C Octamer-binding transcr 99.8 1.7E-19 5.7E-24 132.4 7.0 60 5-64 99-158 (160)
64 1le8_B Mating-type protein alp 99.8 2.7E-19 9.2E-24 117.8 7.3 58 8-65 3-63 (83)
65 2dmp_A Zinc fingers and homeob 99.8 3.2E-19 1.1E-23 118.9 7.5 57 11-67 17-73 (89)
66 2l9r_A Homeobox protein NKX-3. 99.8 1.2E-19 4.3E-24 115.4 4.6 55 12-66 9-63 (69)
67 1lfb_A Liver transcription fac 99.8 1.7E-19 5.9E-24 122.3 5.2 61 4-64 6-87 (99)
68 3l1p_A POU domain, class 5, tr 99.8 5.9E-19 2E-23 128.9 6.9 61 5-65 94-154 (155)
69 2e19_A Transcription factor 8; 99.8 8.1E-19 2.8E-23 110.1 5.3 55 10-64 6-60 (64)
70 1x2m_A LAG1 longevity assuranc 99.7 8E-19 2.7E-23 109.7 4.4 50 15-64 8-58 (64)
71 2d5v_A Hepatocyte nuclear fact 99.7 2E-18 6.7E-23 127.0 5.5 61 5-65 95-155 (164)
72 3k2a_A Homeobox protein MEIS2; 99.7 4.6E-17 1.6E-21 102.9 6.9 54 12-65 3-59 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 6.1E-17 2.1E-21 121.9 3.8 60 5-64 113-193 (194)
74 2h8r_A Hepatocyte nuclear fact 99.6 9.5E-16 3.3E-20 116.9 6.5 58 4-61 139-217 (221)
75 2da7_A Zinc finger homeobox pr 99.6 2.6E-15 9E-20 94.4 7.0 46 16-61 14-59 (71)
76 2lk2_A Homeobox protein TGIF1; 99.6 1.1E-14 3.9E-19 96.3 8.4 58 12-69 10-70 (89)
77 1mh3_A Maltose binding-A1 home 99.4 4.6E-14 1.6E-18 115.5 4.0 55 9-63 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 3.8E-10 1.3E-14 62.5 -2.9 21 49-69 1-21 (37)
79 2ys9_A Homeobox and leucine zi 95.7 0.018 6.2E-07 35.7 4.6 42 15-56 14-55 (70)
80 1b72_A Protein (homeobox prote 93.2 0.0015 5.1E-08 43.2 -5.1 70 43-148 2-71 (97)
81 2elh_A CG11849-PA, LD40883P; s 90.1 1.3 4.6E-05 27.8 6.7 46 7-57 16-61 (87)
82 1hlv_A CENP-B, major centromer 86.9 2.4 8.2E-05 28.2 6.7 49 10-61 4-52 (131)
83 2glo_A Brinker CG9653-PA; prot 86.6 1.1 3.7E-05 26.0 4.2 46 11-57 3-48 (59)
84 3hug_A RNA polymerase sigma fa 86.2 3.8 0.00013 25.7 7.0 48 14-66 38-85 (92)
85 2da3_A Alpha-fetoprotein enhan 85.4 0.15 5.1E-06 31.8 -0.2 41 103-148 14-54 (80)
86 1wh7_A ZF-HD homeobox family p 85.0 0.16 5.5E-06 32.1 -0.2 39 104-148 15-58 (80)
87 2dmt_A Homeobox protein BARH-l 83.0 0.13 4.5E-06 32.3 -1.2 40 104-148 15-54 (80)
88 1wi3_A DNA-binding protein SAT 82.6 0.098 3.4E-06 32.4 -1.9 40 104-148 5-45 (71)
89 2kt0_A Nanog, homeobox protein 82.5 0.22 7.6E-06 31.4 -0.3 42 103-149 19-60 (84)
90 1tc3_C Protein (TC3 transposas 79.7 5 0.00017 21.1 5.3 39 13-56 5-43 (51)
91 2o8x_A Probable RNA polymerase 79.5 6.7 0.00023 22.7 5.8 47 13-64 15-61 (70)
92 2cqx_A LAG1 longevity assuranc 79.3 0.46 1.6E-05 29.3 0.4 42 102-148 4-46 (72)
93 2djn_A Homeobox protein DLX-5; 79.0 0.23 7.8E-06 30.3 -1.1 39 105-148 6-44 (70)
94 1wh5_A ZF-HD homeobox family p 77.1 0.28 9.5E-06 30.9 -1.2 39 105-148 16-58 (80)
95 1ku3_A Sigma factor SIGA; heli 76.0 9.5 0.00033 22.6 5.9 50 13-63 10-59 (73)
96 1s7o_A Hypothetical UPF0122 pr 75.6 9.6 0.00033 25.1 6.3 48 13-65 22-69 (113)
97 2ecc_A Homeobox and leucine zi 75.1 0.15 5.3E-06 32.1 -2.7 35 109-148 6-40 (76)
98 1p4w_A RCSB; solution structur 75.0 12 0.00041 24.1 6.5 45 11-61 32-76 (99)
99 2k40_A Homeobox expressed in E 74.8 0.24 8.2E-06 29.9 -1.9 37 107-148 2-38 (67)
100 2cue_A Paired box protein PAX6 74.3 0.39 1.3E-05 30.0 -1.0 39 105-148 6-44 (80)
101 1puf_A HOX-1.7, homeobox prote 73.6 0.29 1E-05 30.4 -1.7 40 104-148 11-50 (77)
102 2cra_A Homeobox protein HOX-B1 73.3 0.22 7.7E-06 30.3 -2.3 39 105-148 6-44 (70)
103 2jn6_A Protein CGL2762, transp 73.1 10 0.00035 23.7 5.7 42 11-56 3-45 (97)
104 3mzy_A RNA polymerase sigma-H 72.7 13 0.00045 24.8 6.6 47 14-66 110-156 (164)
105 3c57_A Two component transcrip 72.4 8.7 0.0003 24.3 5.2 44 13-62 27-70 (95)
106 2da1_A Alpha-fetoprotein enhan 71.6 0.26 8.9E-06 29.9 -2.3 39 105-148 6-44 (70)
107 2dmu_A Homeobox protein goosec 71.5 0.23 8E-06 30.2 -2.5 38 106-148 7-44 (70)
108 2da2_A Alpha-fetoprotein enhan 71.4 0.27 9.2E-06 29.9 -2.3 39 105-148 6-44 (70)
109 1jko_C HIN recombinase, DNA-in 70.8 1.4 4.7E-05 24.0 0.9 40 13-57 5-44 (52)
110 2da6_A Hepatocyte nuclear fact 70.7 0.45 1.5E-05 31.6 -1.4 38 106-148 6-43 (102)
111 1fse_A GERE; helix-turn-helix 70.6 11 0.00037 22.0 5.1 46 10-61 8-53 (74)
112 1xsv_A Hypothetical UPF0122 pr 70.3 14 0.00047 24.3 6.0 48 13-65 25-72 (113)
113 2p7v_B Sigma-70, RNA polymeras 70.2 8.3 0.00028 22.5 4.5 49 13-62 5-53 (68)
114 1yz8_P Pituitary homeobox 2; D 69.9 0.39 1.3E-05 29.0 -1.7 38 107-149 4-41 (68)
115 3nar_A ZHX1, zinc fingers and 69.6 0.17 6E-06 32.9 -3.6 42 102-148 21-62 (96)
116 1du6_A PBX1, homeobox protein 68.8 0.64 2.2E-05 27.6 -0.9 38 106-148 3-43 (64)
117 2e1o_A Homeobox protein PRH; D 68.5 0.34 1.2E-05 29.4 -2.2 38 106-148 7-44 (70)
118 1nk2_P Homeobox protein VND; h 66.8 0.48 1.6E-05 29.4 -1.8 39 105-148 8-46 (77)
119 1tty_A Sigma-A, RNA polymerase 66.7 13 0.00044 22.9 5.0 50 13-63 18-67 (87)
120 2dmq_A LIM/homeobox protein LH 66.3 0.42 1.4E-05 29.8 -2.2 38 106-148 7-44 (80)
121 1je8_A Nitrate/nitrite respons 66.1 15 0.00052 22.4 5.2 43 13-61 21-63 (82)
122 2dms_A Homeobox protein OTX2; 65.7 0.41 1.4E-05 29.9 -2.3 39 105-148 6-44 (80)
123 1bw5_A ISL-1HD, insulin gene e 65.0 0.26 9E-06 29.6 -3.3 37 107-148 4-40 (66)
124 3a01_A Homeodomain-containing 64.5 0.68 2.3E-05 29.9 -1.5 39 105-148 16-54 (93)
125 2l7z_A Homeobox protein HOX-A1 64.3 0.41 1.4E-05 29.4 -2.5 40 104-148 5-44 (73)
126 1or7_A Sigma-24, RNA polymeras 64.2 18 0.00063 25.0 6.1 46 15-65 142-187 (194)
127 1rp3_A RNA polymerase sigma fa 63.3 19 0.00064 25.8 6.1 47 14-65 188-234 (239)
128 2rn7_A IS629 ORFA; helix, all 63.2 22 0.00074 22.6 5.8 46 11-56 4-52 (108)
129 1zq3_P PRD-4, homeotic bicoid 63.1 0.58 2E-05 28.2 -1.9 36 108-148 4-39 (68)
130 1b8i_A Ultrabithorax, protein 61.8 0.41 1.4E-05 30.1 -2.9 39 105-148 19-57 (81)
131 1uhs_A HOP, homeodomain only p 61.2 0.5 1.7E-05 28.8 -2.5 36 108-148 3-39 (72)
132 2r5y_A Homeotic protein sex co 60.6 0.8 2.7E-05 29.1 -1.7 39 105-148 27-65 (88)
133 2dn0_A Zinc fingers and homeob 60.6 0.71 2.4E-05 28.5 -1.9 34 110-148 12-45 (76)
134 2h8r_A Hepatocyte nuclear fact 59.2 2.6 8.8E-05 31.8 0.7 41 103-148 139-179 (221)
135 1x3u_A Transcriptional regulat 59.0 12 0.00042 22.1 3.8 42 14-61 17-58 (79)
136 2e19_A Transcription factor 8; 58.4 0.87 3E-05 27.3 -1.7 31 113-148 10-40 (64)
137 1fjl_A Paired protein; DNA-bin 58.3 0.49 1.7E-05 29.6 -3.0 40 104-148 16-55 (81)
138 2da5_A Zinc fingers and homeob 57.7 0.6 2.1E-05 28.8 -2.6 35 109-148 10-44 (75)
139 2q24_A Putative TETR family tr 56.8 5.5 0.00019 27.6 2.1 40 19-60 21-60 (194)
140 2m0c_A Homeobox protein arista 56.5 0.76 2.6E-05 28.0 -2.3 38 106-148 9-46 (75)
141 1iuf_A Centromere ABP1 protein 56.4 22 0.00076 24.2 5.2 47 8-57 6-59 (144)
142 3ulq_B Transcriptional regulat 55.6 33 0.0011 21.4 5.5 43 11-59 27-69 (90)
143 1ic8_A Hepatocyte nuclear fact 55.5 3.1 0.00011 30.6 0.5 41 104-149 113-153 (194)
144 2jpc_A SSRB; DNA binding prote 54.7 14 0.00047 20.7 3.3 26 37-62 16-41 (61)
145 3bd1_A CRO protein; transcript 54.6 7.4 0.00025 23.3 2.2 23 37-59 14-36 (79)
146 2dmp_A Zinc fingers and homeob 54.0 1.3 4.3E-05 28.3 -1.6 34 110-148 17-50 (89)
147 1fi6_A EH domain protein REPS1 54.0 26 0.00088 21.5 4.8 44 13-56 2-50 (92)
148 2lv7_A Calcium-binding protein 53.9 34 0.0012 21.5 5.5 47 10-56 26-79 (100)
149 1u78_A TC3 transposase, transp 53.5 29 0.00098 22.7 5.3 40 12-56 5-44 (141)
150 3fmy_A HTH-type transcriptiona 53.3 17 0.00058 21.4 3.7 40 12-58 9-48 (73)
151 2rnj_A Response regulator prot 52.2 27 0.00091 21.5 4.6 43 13-61 29-71 (91)
152 2cuf_A FLJ21616 protein; homeo 52.2 0.93 3.2E-05 29.2 -2.5 39 106-149 7-45 (95)
153 2hin_A GP39, repressor protein 51.7 14 0.00048 22.5 3.1 23 37-59 13-35 (71)
154 1lfb_A Liver transcription fac 49.4 1.2 4.3E-05 29.1 -2.2 37 106-147 9-45 (99)
155 2x48_A CAG38821; archeal virus 49.3 28 0.00096 19.0 4.0 36 16-56 18-53 (55)
156 1c07_A Protein (epidermal grow 46.3 33 0.0011 21.2 4.4 43 14-56 4-51 (95)
157 1pdn_C Protein (PRD paired); p 45.5 55 0.0019 20.6 5.8 40 13-57 17-56 (128)
158 2pmy_A RAS and EF-hand domain- 45.4 23 0.00078 21.5 3.5 44 13-56 20-68 (91)
159 2q0o_A Probable transcriptiona 45.0 44 0.0015 24.3 5.5 45 11-61 173-217 (236)
160 2q1z_A RPOE, ECF SIGE; ECF sig 44.7 12 0.00039 25.9 2.1 27 38-64 155-181 (184)
161 1l3l_A Transcriptional activat 43.7 55 0.0019 23.7 5.9 45 11-61 171-215 (234)
162 3l1p_A POU domain, class 5, tr 43.5 9.1 0.00031 26.8 1.4 38 106-148 96-133 (155)
163 2xi8_A Putative transcription 43.2 7.8 0.00027 21.8 0.9 22 37-58 17-38 (66)
164 2r1j_L Repressor protein C2; p 41.2 9.1 0.00031 21.7 1.0 23 36-58 20-42 (68)
165 1j9i_A GPNU1 DBD;, terminase s 40.1 21 0.00071 20.9 2.5 20 37-56 5-24 (68)
166 2lfw_A PHYR sigma-like domain; 39.9 25 0.00086 23.9 3.3 47 13-64 93-139 (157)
167 3o9x_A Uncharacterized HTH-typ 39.8 31 0.0011 22.7 3.7 39 13-58 70-108 (133)
168 1rzs_A Antirepressor, regulato 39.7 15 0.00052 21.1 1.8 20 36-55 12-31 (61)
169 2hxi_A Putative transcriptiona 39.4 19 0.00064 26.4 2.7 50 10-60 25-75 (241)
170 2qwt_A Transcriptional regulat 39.1 13 0.00046 25.7 1.8 39 19-59 19-57 (196)
171 3i5g_B Myosin regulatory light 39.1 65 0.0022 21.6 5.3 40 10-49 6-50 (153)
172 1zug_A Phage 434 CRO protein; 38.8 9.7 0.00033 21.8 0.8 22 37-58 19-40 (71)
173 2hku_A A putative transcriptio 38.3 16 0.00053 25.6 2.0 40 19-60 26-65 (215)
174 3bs3_A Putative DNA-binding pr 38.3 11 0.00037 22.0 1.0 22 37-58 26-47 (76)
175 2fq4_A Transcriptional regulat 38.0 9.9 0.00034 26.3 0.9 43 19-62 18-60 (192)
176 3t72_q RNA polymerase sigma fa 37.6 78 0.0027 20.1 5.9 51 13-64 19-69 (99)
177 3omt_A Uncharacterized protein 37.1 11 0.00039 21.9 0.9 23 36-58 23-45 (73)
178 3c3w_A Two component transcrip 36.7 51 0.0017 23.4 4.7 44 12-61 148-191 (225)
179 3lph_A Protein REV; helix-loop 36.7 35 0.0012 20.8 3.1 35 20-68 19-53 (72)
180 1adr_A P22 C2 repressor; trans 36.6 12 0.0004 21.8 1.0 24 36-59 20-43 (76)
181 2g7g_A RHA04620, putative tran 36.0 12 0.00041 26.8 1.1 50 11-63 8-58 (213)
182 3kz3_A Repressor protein CI; f 34.8 13 0.00043 22.3 0.9 23 37-59 28-50 (80)
183 2b5a_A C.BCLI; helix-turn-heli 34.7 13 0.00044 21.7 0.9 23 36-58 25-47 (77)
184 3clo_A Transcriptional regulat 34.4 79 0.0027 23.3 5.5 46 12-63 196-241 (258)
185 2wiu_B HTH-type transcriptiona 34.2 20 0.0007 21.4 1.8 24 36-59 27-50 (88)
186 2v57_A TETR family transcripti 34.1 8.9 0.00031 26.2 0.1 39 19-60 20-58 (190)
187 3cwr_A Transcriptional regulat 34.1 8.9 0.0003 26.4 0.1 43 20-63 24-66 (208)
188 3dcf_A Transcriptional regulat 34.0 15 0.00053 25.4 1.4 41 19-60 37-77 (218)
189 2hxo_A Putative TETR-family tr 34.0 14 0.00049 27.0 1.3 54 7-61 9-63 (237)
190 2qko_A Possible transcriptiona 33.8 11 0.00037 26.5 0.5 45 19-64 34-78 (215)
191 3kz9_A SMCR; transcriptional r 33.5 25 0.00086 23.9 2.4 40 20-60 24-63 (206)
192 3qp6_A CVIR transcriptional re 33.4 1E+02 0.0035 23.0 6.1 45 11-61 195-239 (265)
193 2g7l_A TETR-family transcripti 32.8 16 0.00053 27.0 1.3 54 9-63 14-68 (243)
194 1r69_A Repressor protein CI; g 32.4 33 0.0011 19.2 2.5 21 37-57 17-37 (69)
195 2kpj_A SOS-response transcript 32.3 15 0.0005 22.7 0.9 24 36-59 24-47 (94)
196 2ict_A Antitoxin HIGA; helix-t 32.3 19 0.00067 22.1 1.5 24 36-59 23-46 (94)
197 2a6c_A Helix-turn-helix motif; 32.3 17 0.00057 22.0 1.2 24 36-59 33-56 (83)
198 2jml_A DNA binding domain/tran 32.2 29 0.00099 21.0 2.3 21 36-56 7-27 (81)
199 3b7h_A Prophage LP1 protein 11 31.9 15 0.00051 21.5 0.9 23 37-59 23-45 (78)
200 1e3o_C Octamer-binding transcr 31.7 2.1 7.2E-05 30.3 -3.6 39 105-148 100-138 (160)
201 2np5_A Transcriptional regulat 31.7 14 0.00048 25.8 0.8 41 19-60 15-55 (203)
202 2rek_A Putative TETR-family tr 31.3 13 0.00045 25.6 0.6 39 19-59 22-60 (199)
203 2k27_A Paired box protein PAX- 30.5 89 0.003 21.0 4.9 40 12-56 24-63 (159)
204 1a04_A Nitrate/nitrite respons 30.2 1E+02 0.0035 21.3 5.3 44 13-62 154-197 (215)
205 3lsg_A Two-component response 29.8 46 0.0016 20.7 3.1 25 34-58 19-43 (103)
206 2qtq_A Transcriptional regulat 29.7 36 0.0012 23.2 2.8 41 19-60 22-62 (213)
207 1y7y_A C.AHDI; helix-turn-heli 29.5 40 0.0014 19.1 2.6 23 36-58 28-50 (74)
208 3osg_A MYB21; transcription-DN 29.3 1.2E+02 0.0042 19.9 5.5 53 1-57 1-54 (126)
209 3g1o_A Transcriptional regulat 29.2 23 0.0008 25.6 1.7 41 19-60 49-89 (255)
210 2rae_A Transcriptional regulat 29.1 27 0.00094 23.9 2.0 39 19-58 23-61 (207)
211 2i10_A Putative TETR transcrip 29.0 45 0.0015 23.0 3.2 43 19-62 17-59 (202)
212 2k27_A Paired box protein PAX- 29.0 1.3E+02 0.0045 20.1 6.8 46 11-56 81-133 (159)
213 2zcx_A SCO7815, TETR-family tr 29.0 17 0.00058 26.2 0.9 41 19-60 29-69 (231)
214 2k9q_A Uncharacterized protein 28.7 41 0.0014 19.6 2.5 23 37-59 18-40 (77)
215 3szt_A QCSR, quorum-sensing co 28.1 1.2E+02 0.0042 22.0 5.6 45 11-61 173-217 (237)
216 2pij_A Prophage PFL 6 CRO; tra 27.9 28 0.00095 19.8 1.6 19 37-55 16-34 (67)
217 2opo_A Polcalcin CHE A 3; calc 27.8 90 0.0031 18.0 4.1 44 13-56 4-53 (86)
218 1pdn_C Protein (PRD paired); p 27.8 1.1E+02 0.0039 19.0 5.6 42 12-56 74-125 (128)
219 3qq6_A HTH-type transcriptiona 27.7 44 0.0015 19.7 2.6 22 36-57 25-46 (78)
220 3fiw_A Putative TETR-family tr 27.1 17 0.00057 26.0 0.6 55 8-63 19-74 (211)
221 2pjp_A Selenocysteine-specific 27.1 64 0.0022 21.0 3.5 21 36-56 22-42 (121)
222 3q0w_A HTH-type transcriptiona 27.1 21 0.0007 25.5 1.1 42 19-61 50-91 (236)
223 1irz_A ARR10-B; helix-turn-hel 27.0 1E+02 0.0035 18.2 6.5 58 7-64 3-62 (64)
224 2v79_A DNA replication protein 26.6 1.4E+02 0.0046 20.1 5.2 41 14-57 30-74 (135)
225 2ef8_A C.ECOT38IS, putative tr 26.4 48 0.0016 19.4 2.6 22 37-58 26-47 (84)
226 2joj_A Centrin protein; N-term 26.3 92 0.0031 17.4 3.9 43 14-56 1-50 (77)
227 3f1b_A TETR-like transcription 26.1 16 0.00054 25.0 0.3 42 19-61 20-61 (203)
228 1t33_A Putative transcriptiona 26.0 26 0.00088 24.4 1.4 41 19-61 18-58 (224)
229 1x57_A Endothelial differentia 25.9 28 0.00095 21.2 1.4 24 36-59 28-51 (91)
230 3f6w_A XRE-family like protein 25.6 49 0.0017 19.4 2.5 23 36-58 29-51 (83)
231 2ppx_A AGR_C_3184P, uncharacte 25.6 49 0.0017 20.5 2.6 22 37-58 46-67 (99)
232 3bni_A Putative TETR-family tr 25.5 16 0.00054 26.1 0.2 40 19-59 49-88 (229)
233 3k2z_A LEXA repressor; winged 25.3 89 0.003 22.0 4.3 40 14-55 3-45 (196)
234 2jt1_A PEFI protein; solution 25.2 49 0.0017 20.2 2.4 24 30-55 22-45 (77)
235 2ofy_A Putative XRE-family tra 24.6 1.1E+02 0.0038 17.9 4.8 24 36-59 29-52 (86)
236 3jsj_A Putative TETR-family tr 24.5 30 0.001 23.4 1.5 41 19-61 15-55 (190)
237 3i9v_2 NADH-quinone oxidoreduc 24.4 1E+02 0.0034 22.0 4.3 37 16-52 25-61 (181)
238 3vpr_A Transcriptional regulat 24.3 46 0.0016 22.5 2.5 43 19-62 9-51 (190)
239 3s8q_A R-M controller protein; 24.2 56 0.0019 19.1 2.6 23 36-58 26-48 (82)
240 1zs4_A Regulatory protein CII; 24.0 51 0.0018 20.7 2.4 21 37-57 27-47 (83)
241 2lhi_A Calmodulin, serine/thre 24.0 64 0.0022 22.2 3.2 39 11-49 2-45 (176)
242 1xwr_A Regulatory protein CII; 23.9 42 0.0014 21.6 2.0 21 36-56 25-45 (97)
243 3op9_A PLI0006 protein; struct 23.7 33 0.0011 21.8 1.5 23 36-58 24-46 (114)
244 1etf_B REV peptide; complex (R 23.6 64 0.0022 15.7 2.1 13 56-68 7-19 (26)
245 2cw1_A SN4M; lambda CRO fold, 23.4 32 0.0011 20.4 1.2 20 36-55 15-34 (65)
246 3f0c_A TETR-molecule A, transc 23.2 37 0.0013 23.4 1.8 41 19-60 17-57 (216)
247 2gqb_A Conserved hypothetical 23.0 1.6E+02 0.0053 20.1 4.7 28 31-58 80-112 (130)
248 3gzi_A Transcriptional regulat 22.5 56 0.0019 22.4 2.6 40 20-60 24-63 (218)
249 3dew_A Transcriptional regulat 22.3 27 0.00094 23.6 0.9 42 19-61 14-55 (206)
250 3qrx_A Centrin; calcium-bindin 22.3 1.7E+02 0.0057 19.0 5.3 48 8-55 16-70 (169)
251 2ktg_A Calmodulin, putative; e 22.2 1.2E+02 0.0041 17.3 4.9 46 11-56 5-57 (85)
252 1lmb_3 Protein (lambda repress 22.2 62 0.0021 19.4 2.5 23 36-58 32-54 (92)
253 2ewt_A BLDD, putative DNA-bind 22.1 63 0.0022 18.1 2.5 23 36-58 23-47 (71)
254 3mn2_A Probable ARAC family tr 21.9 1E+02 0.0035 19.2 3.7 24 35-58 19-42 (108)
255 3t76_A VANU, transcriptional r 21.9 65 0.0022 19.9 2.6 24 36-59 39-62 (88)
256 1eh2_A EPS15; calcium binding, 21.9 1.6E+02 0.0054 18.6 5.7 45 12-56 7-55 (106)
257 1dtl_A Cardiac troponin C; hel 21.9 1.6E+02 0.0056 18.8 5.6 46 11-56 9-62 (161)
258 1avs_A Troponin C; muscle cont 21.8 1.3E+02 0.0044 17.5 4.7 44 13-56 13-63 (90)
259 1j7q_A CAVP, calcium vector pr 21.8 1.3E+02 0.0043 17.4 5.9 46 11-56 5-60 (86)
260 2qib_A TETR-family transcripti 21.7 13 0.00043 26.7 -1.0 42 19-61 19-60 (231)
261 2jrt_A Uncharacterized protein 21.4 1.5E+02 0.005 18.8 4.3 41 11-56 30-71 (95)
262 3ppb_A Putative TETR family tr 21.3 47 0.0016 22.2 2.0 41 19-60 15-55 (195)
263 1r8d_A Transcription activator 21.1 66 0.0023 20.5 2.6 19 37-55 5-23 (109)
264 3eus_A DNA-binding protein; st 21.1 67 0.0023 19.3 2.5 23 36-58 29-51 (86)
265 2ao9_A Phage protein; structur 20.9 91 0.0031 21.8 3.4 46 12-57 22-71 (155)
266 1uxc_A FRUR (1-57), fructose r 20.9 54 0.0019 19.2 1.9 23 37-59 3-25 (65)
267 3bru_A Regulatory protein, TET 20.8 45 0.0015 23.0 1.9 41 19-60 36-76 (222)
268 3bqz_B HTH-type transcriptiona 20.7 47 0.0016 22.3 1.9 40 19-59 8-47 (194)
269 1l9z_H Sigma factor SIGA; heli 20.7 1.8E+02 0.0063 23.7 5.7 49 14-63 376-424 (438)
270 2vz4_A Tipal, HTH-type transcr 20.5 69 0.0024 20.4 2.6 20 37-56 4-23 (108)
271 1yio_A Response regulatory pro 20.4 1.6E+02 0.0054 20.1 4.7 42 14-61 143-184 (208)
272 2zcm_A Biofilm operon icaabcd 20.2 46 0.0016 22.5 1.8 42 19-61 13-54 (192)
273 2kgr_A Intersectin-1; structur 20.1 1.5E+02 0.0053 18.6 4.3 44 13-56 7-55 (111)
274 2l49_A C protein; P2 bacteriop 20.1 73 0.0025 19.3 2.6 24 36-59 19-42 (99)
275 3kkd_A Transcriptional regulat 20.1 26 0.00089 24.9 0.4 41 19-60 41-81 (237)
No 1
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.87 E-value=5e-22 Score=129.14 Aligned_cols=66 Identities=52% Similarity=0.776 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhh
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQAMN 69 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~~~ 69 (157)
+++.+|.||.|+..|+..||..|..++||+..++++||..+||++.+|+|||||||+|+|+.....
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 456788999999999999999999999999999999999999999999999999999999866543
No 2
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=3e-22 Score=131.11 Aligned_cols=64 Identities=33% Similarity=0.461 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~ 67 (157)
.++.||.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999553
No 3
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=7e-22 Score=129.24 Aligned_cols=64 Identities=22% Similarity=0.302 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhh
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQAM 68 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~~ 68 (157)
.+.||.||.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999997654
No 4
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.87 E-value=4e-22 Score=124.85 Aligned_cols=59 Identities=39% Similarity=0.621 Sum_probs=55.9
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 7 AGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 7 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.+|.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 57889999999999999999999999999999999999999999999999999999985
No 5
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.87 E-value=2.5e-22 Score=124.97 Aligned_cols=58 Identities=38% Similarity=0.631 Sum_probs=53.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 7 AGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 7 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
.||.||.|+..|+..||..|..++||+..++++||..+||++.+|++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999986
No 6
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.87 E-value=6.6e-22 Score=125.66 Aligned_cols=63 Identities=37% Similarity=0.538 Sum_probs=59.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhh
Q psy8301 7 AGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQAMN 69 (157)
Q Consensus 7 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~~~ 69 (157)
.||.||.|+..|+.+||..|..++||+..+++.||..+||++.+|++||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 578899999999999999999999999999999999999999999999999999999976543
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=5.5e-22 Score=129.84 Aligned_cols=66 Identities=30% Similarity=0.526 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhhc
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQAMNQ 70 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~~~~ 70 (157)
.+.+|.||.|+..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+......
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 456789999999999999999999999999999999999999999999999999999999776543
No 8
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.87 E-value=9.7e-22 Score=127.77 Aligned_cols=66 Identities=36% Similarity=0.554 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhh
Q psy8301 3 QSHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQAM 68 (157)
Q Consensus 3 ~~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~~ 68 (157)
..++.+|.|+.|+..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+....
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 345678899999999999999999999999999999999999999999999999999999997654
No 9
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.87 E-value=6e-22 Score=121.97 Aligned_cols=57 Identities=51% Similarity=0.724 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 8 GKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 8 rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
||.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999987
No 10
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.6e-22 Score=130.70 Aligned_cols=62 Identities=37% Similarity=0.592 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.++.+|.||.|+..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 45678899999999999999999999999999999999999999999999999999999983
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=7.7e-22 Score=125.97 Aligned_cols=61 Identities=33% Similarity=0.513 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.+.+|.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 4567899999999999999999999999999999999999999999999999999999984
No 12
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.86 E-value=9.3e-22 Score=129.02 Aligned_cols=64 Identities=33% Similarity=0.551 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~ 67 (157)
+++.+|.|+.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||||||+|+|+...
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4567889999999999999999999999999999999999999999999999999999999664
No 13
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.86 E-value=4e-22 Score=126.69 Aligned_cols=61 Identities=36% Similarity=0.581 Sum_probs=58.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q psy8301 7 AGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67 (157)
Q Consensus 7 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~ 67 (157)
+||.||.|+..|+..||..|..++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4688999999999999999999999999999999999999999999999999999999553
No 14
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.86 E-value=6.5e-22 Score=125.69 Aligned_cols=61 Identities=56% Similarity=0.814 Sum_probs=58.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q psy8301 7 AGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67 (157)
Q Consensus 7 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~ 67 (157)
+||.||.|+..|+..||..|..++||+..++.+||..+||++.+|++||+|||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5688999999999999999999999999999999999999999999999999999999553
No 15
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.86 E-value=7.5e-22 Score=122.40 Aligned_cols=58 Identities=38% Similarity=0.603 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 8 GKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 8 rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
||.||.|+..|+..||..|..++||+..++++||..+||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999984
No 16
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=4.2e-22 Score=127.23 Aligned_cols=61 Identities=33% Similarity=0.544 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.+.||.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 4678899999999999999999999999999999999999999999999999999999883
No 17
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.86 E-value=1.2e-21 Score=131.83 Aligned_cols=66 Identities=39% Similarity=0.608 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhh
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQAMN 69 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~~~ 69 (157)
+.+.||.||.|+..|+..||..|..++||+..++++||..+||++.+|+|||||||+|+|+.....
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 456788999999999999999999999999999999999999999999999999999999976543
No 18
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.86 E-value=3.3e-22 Score=124.79 Aligned_cols=59 Identities=46% Similarity=0.589 Sum_probs=52.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 6 RAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 6 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
+.+|.||.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 35788999999999999999999999999999999999999999999999999999987
No 19
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=6.8e-22 Score=129.22 Aligned_cols=62 Identities=23% Similarity=0.363 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
+++.+|.||.|+.+|+.+|+..|..++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 45678899999999999999999999999999999999999999999999999999999983
No 20
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=8.1e-22 Score=125.84 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.+.+|.||.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 4678899999999999999999999999999999999999999999999999999999984
No 21
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.86 E-value=6.2e-22 Score=123.09 Aligned_cols=60 Identities=27% Similarity=0.467 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~r 63 (157)
+++.+|.|+.|+..|+.+|+..|..++||+..++++||..+||++.+|++||+|||+++|
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 466788999999999999999999999999999999999999999999999999999975
No 22
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.86 E-value=6.1e-22 Score=125.05 Aligned_cols=60 Identities=27% Similarity=0.412 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 6 RAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 6 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
+.+|.||.|+..|+..||..|..++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 467899999999999999999999999999999999999999999999999999998873
No 23
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=2.3e-21 Score=123.78 Aligned_cols=62 Identities=44% Similarity=0.608 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~ 66 (157)
.+.++.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 35678899999999999999999999999999999999999999999999999999999853
No 24
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.86 E-value=3e-21 Score=124.26 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q psy8301 7 AGKMRTNGIQSQVFELERKFQH-IRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67 (157)
Q Consensus 7 ~rr~Rt~~t~~q~~~Le~~F~~-~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~ 67 (157)
.++.||.|+..|+.+||..|.. ++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 4577999999999999999995 999999999999999999999999999999999999764
No 25
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=9.6e-22 Score=125.49 Aligned_cols=61 Identities=28% Similarity=0.353 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.+.+|.||.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 4678899999999999999999999999999999999999999999999999999999883
No 26
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=3e-22 Score=132.17 Aligned_cols=63 Identities=41% Similarity=0.538 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~ 66 (157)
+.+.+|.||.|+..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999999999998843
No 27
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.85 E-value=5.6e-22 Score=125.98 Aligned_cols=62 Identities=32% Similarity=0.503 Sum_probs=58.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q psy8301 6 RAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67 (157)
Q Consensus 6 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~ 67 (157)
+.+|.||.|+..|+..||..|..++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 36788999999999999999999999999999999999999999999999999999999654
No 28
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=128.55 Aligned_cols=62 Identities=23% Similarity=0.280 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhc----CCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHI----RYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~----~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.++.+|.||.|+.+|+.+||.+|..+ +||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 35678899999999999999999999 999999999999999999999999999999999984
No 29
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=126.75 Aligned_cols=65 Identities=32% Similarity=0.483 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q psy8301 3 QSHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67 (157)
Q Consensus 3 ~~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~ 67 (157)
...+++|.||.|+..|+.+|+..|..++||+..++++||..+||++.+|++||+|||+|+|+...
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 34567888999999999999999999999999999999999999999999999999999998443
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.85 E-value=2.2e-21 Score=124.88 Aligned_cols=61 Identities=36% Similarity=0.579 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.+.+|.|+.|+..|+..||..|..++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999984
No 31
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.9e-22 Score=125.94 Aligned_cols=60 Identities=43% Similarity=0.603 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
.+.+|.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKK 64 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcc
Confidence 467889999999999999999999999999999999999999999999999999999887
No 32
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.85 E-value=4.4e-21 Score=123.09 Aligned_cols=60 Identities=23% Similarity=0.320 Sum_probs=56.8
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q psy8301 8 GKMRTNGIQSQVFELERKFQH-IRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67 (157)
Q Consensus 8 rr~Rt~~t~~q~~~Le~~F~~-~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~ 67 (157)
.+.|+.|+..|+.+||..|.. ++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 467899999999999999996 999999999999999999999999999999999999664
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=118.86 Aligned_cols=57 Identities=56% Similarity=0.841 Sum_probs=54.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q psy8301 7 AGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63 (157)
Q Consensus 7 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~r 63 (157)
++|.|+.|+..|+..|+..|..++||+..++++||..+||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999975
No 34
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.84 E-value=2.2e-21 Score=120.24 Aligned_cols=58 Identities=31% Similarity=0.488 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q psy8301 10 MRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67 (157)
Q Consensus 10 ~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~ 67 (157)
.|+.||..|+..||..|..++||+..++++||..+||++.+|++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 4799999999999999999999999999999999999999999999999999998653
No 35
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-21 Score=121.87 Aligned_cols=60 Identities=37% Similarity=0.448 Sum_probs=57.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy8301 7 AGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66 (157)
Q Consensus 7 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~ 66 (157)
.||.|+.|+..|+.+||..|..++||+..+++.||..+||++.+|++||+|||+|+|+..
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 368899999999999999999999999999999999999999999999999999999843
No 36
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.84 E-value=9.8e-22 Score=128.70 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQH----IRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~----~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
+++||.||.|+.+|+..||..|+. ++||+..++++||..+||++.+|+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 467889999999999999999999 999999999999999999999999999999999764
No 37
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.84 E-value=3.1e-21 Score=126.59 Aligned_cols=61 Identities=34% Similarity=0.543 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.+.+|.||.|+..|+..||..|..++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 3567889999999999999999999999999999999999999999999999999999984
No 38
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.84 E-value=4.9e-21 Score=117.19 Aligned_cols=54 Identities=48% Similarity=0.743 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 12 TNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 12 t~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
|.|+..|+..||..|..++||+..++++||..+||++.+|++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 689999999999999999999999999999999999999999999999999984
No 39
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.84 E-value=4e-21 Score=127.88 Aligned_cols=61 Identities=38% Similarity=0.610 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.+.+|.||.|+..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 3567899999999999999999999999999999999999999999999999999999984
No 40
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=7.5e-21 Score=122.78 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=55.4
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q psy8301 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67 (157)
Q Consensus 9 r~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~ 67 (157)
..|+.||.+|+.+|++.|..++||+..++++||..+||++.+|+|||||||+|+|+...
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999998543
No 41
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=9.1e-21 Score=128.32 Aligned_cols=62 Identities=44% Similarity=0.655 Sum_probs=56.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q psy8301 6 RAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67 (157)
Q Consensus 6 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~ 67 (157)
+.++.||.|+..|+..||..|..++||+..++++||..+||++.+|+|||||||+|+|+...
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 45788999999999999999999999999999999999999999999999999999999664
No 42
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=2.4e-20 Score=125.79 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC---------------CChhHHHHHHHHHHHHHHHHHhh
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEIN---------------LSPTQVKIWFQNRRYKQKRLQAM 68 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~---------------l~~~~VqvWFqNrR~k~rr~~~~ 68 (157)
++.||.|+.|+..|+.+||..|..++||+..++++||..+| |++.+|++||||||+|+|+....
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 56788999999999999999999999999999999999999 99999999999999999997764
No 43
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.83 E-value=1.4e-21 Score=127.88 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQH-----IRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
..++||.||.|+.+|+..|| .|.. ++||+..++++||..+||++.+|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34678899999999999999 7999 999999999999999999999999999999999764
No 44
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=120.58 Aligned_cols=61 Identities=23% Similarity=0.370 Sum_probs=57.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy8301 6 RAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66 (157)
Q Consensus 6 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~ 66 (157)
..++.|+.|+..|+..||..|..++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 3567899999999999999999999999999999999999999999999999999999843
No 45
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=120.77 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy8301 8 GKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66 (157)
Q Consensus 8 rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~ 66 (157)
.+.|+.||..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 45677899999999999999999999999999999999999999999999999999944
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=5.6e-20 Score=118.17 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQH---IRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.+.++.|+.|+..|+.+|+.+|.. ++||+..++++||..+||++.+|++||+|||+|+++.
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 457788999999999999999987 9999999999999999999999999999999999984
No 47
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=3.5e-20 Score=116.00 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQH-IRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~-~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
.+++||.||.|+.+|+.+|+..|+. ++||+...|+.||..+||++++|+|||||||.-
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 4568899999999999999999999 999999999999999999999999999999975
No 48
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=122.55 Aligned_cols=60 Identities=28% Similarity=0.471 Sum_probs=56.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy8301 7 AGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66 (157)
Q Consensus 7 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~ 66 (157)
..+.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 456799999999999999999999999999999999999999999999999999998843
No 49
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.82 E-value=5.7e-20 Score=118.15 Aligned_cols=60 Identities=28% Similarity=0.347 Sum_probs=56.7
Q ss_pred CCCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy8301 7 AGKMRTNGIQSQVFELERKF---QHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66 (157)
Q Consensus 7 ~rr~Rt~~t~~q~~~Le~~F---~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~ 66 (157)
.||.|+.|+..|+.+|+.+| ..++||+..+++.||..+||++.+|++||+|||+|+|+..
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccc
Confidence 36789999999999999999 9999999999999999999999999999999999999843
No 50
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=4.2e-20 Score=122.97 Aligned_cols=54 Identities=17% Similarity=0.310 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~ 66 (157)
.||..|+.+||..|..++||+..+|++||..+||++.+|+|||||||+|||+.+
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 899999999999999999999999999999999999999999999999999844
No 51
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.81 E-value=3.4e-20 Score=125.29 Aligned_cols=61 Identities=26% Similarity=0.378 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
...+|.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 4567889999999999999999999999999999999999999999999999999999984
No 52
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=123.47 Aligned_cols=66 Identities=26% Similarity=0.279 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHh---------------------CCChhHHHHHHHHHHHHH
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEI---------------------NLSPTQVKIWFQNRRYKQ 62 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l---------------------~l~~~~VqvWFqNrR~k~ 62 (157)
.++.||.|+.|++.|+.+||..|..++||+..+|++||..+ +|++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHhhh
Q psy8301 63 KRLQAMN 69 (157)
Q Consensus 63 rr~~~~~ 69 (157)
++.....
T Consensus 83 kr~~~~~ 89 (102)
T 2da6_A 83 AFRQKLA 89 (102)
T ss_dssp HHHHHHH
T ss_pred HHhhHhh
Confidence 9876543
No 53
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.81 E-value=1.7e-20 Score=117.65 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=56.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 6 RAGKMRTNGIQSQVFELERKF---QHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 6 ~~rr~Rt~~t~~q~~~Le~~F---~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
..++.|+.|+..|+.+|+.+| ..++||+..++++||..+||++.+|++||+|+|+|+|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 467889999999999999999 99999999999999999999999999999999999875
No 54
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.81 E-value=8.9e-20 Score=112.94 Aligned_cols=55 Identities=35% Similarity=0.362 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 10 MRTNGIQSQVFELERKFQH---IRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 10 ~Rt~~t~~q~~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
+|+.|+..|+.+|+.+|.. ++||+..++++||..+||++.+|++||+|||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3689999999999999999 999999999999999999999999999999999986
No 55
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.80 E-value=8.1e-20 Score=121.28 Aligned_cols=59 Identities=32% Similarity=0.313 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQH---IRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~r 63 (157)
.++++.|+.|+..|+.+|+.+|.. ++||+..++++||..+||++.+|++||+|||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 456677999999999999999999 99999999999999999999999999999999987
No 56
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.80 E-value=1.3e-19 Score=120.16 Aligned_cols=60 Identities=27% Similarity=0.337 Sum_probs=56.3
Q ss_pred CCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q psy8301 8 GKMRTNGIQSQVFELERKF---QHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67 (157)
Q Consensus 8 rr~Rt~~t~~q~~~Le~~F---~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~ 67 (157)
||.|+.|+..|+.+|+.+| ..++||+..++++||..+||++.+|++||+|||+|+|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 6789999999999999999 89999999999999999999999999999999999998543
No 57
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=3.3e-20 Score=119.08 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=55.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHh-hhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 6 RAGKMRTNGIQSQVFELERKF-QHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 6 ~~rr~Rt~~t~~q~~~Le~~F-~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
...+.|++++..|+..||..| ..++||+..++++||..+||++.+|+|||||||+|+|+
T Consensus 7 ~g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 7 GGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 455677889999999999999 99999999999999999999999999999999999986
No 58
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-19 Score=117.17 Aligned_cols=63 Identities=27% Similarity=0.250 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQH---IRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~ 67 (157)
.++++.|+.|+..|+.+|+.+|.. ++||+..++++||..+||++.+|++||+|+|+|+++...
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 456788999999999999999987 599999999999999999999999999999999988554
No 59
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=112.06 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy8301 14 GIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66 (157)
Q Consensus 14 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~ 66 (157)
-+.+|+..||..|..++||+..++++||..+||++.+|++||||||+|||+..
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 37899999999999999999999999999999999999999999999999853
No 60
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.79 E-value=1.1e-19 Score=131.41 Aligned_cols=61 Identities=34% Similarity=0.446 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
.+++||.||.|+..|+..||..|..++||+..++++||..+||++.+|+|||||||+|+|+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 144 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhc
Confidence 3567888999999999999999999999999999999999999999999999999999987
No 61
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.79 E-value=1.2e-19 Score=133.70 Aligned_cols=63 Identities=32% Similarity=0.364 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~ 66 (157)
.+++||.||.|+..|+..||..|..++||+..+|++||..+||++.+|+|||||||+|+|+..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 356788999999999999999999999999999999999999999999999999999999843
No 62
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=130.52 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
+.++||.|+.|+..|+..||..|..++||+..++++||..+||++.+|+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3567889999999999999999999999999999999999999999999999999999986
No 63
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.78 E-value=1.7e-19 Score=132.41 Aligned_cols=60 Identities=27% Similarity=0.483 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
.++||.||.|+..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+||
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 158 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhc
Confidence 467889999999999999999999999999999999999999999999999999999987
No 64
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.78 E-value=2.7e-19 Score=117.78 Aligned_cols=58 Identities=31% Similarity=0.310 Sum_probs=53.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 8 GKMRTNGIQSQVFELERKFQH---IRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 8 rr~Rt~~t~~q~~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
++.|++|+..|+.+|+.+|.. ++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 355677999999999999999 9999999999999999999999999999999999884
No 65
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.2e-19 Score=118.91 Aligned_cols=57 Identities=26% Similarity=0.382 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q psy8301 11 RTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~ 67 (157)
+..||..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+.+.
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 344999999999999999999999999999999999999999999999999988443
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=115.35 Aligned_cols=55 Identities=60% Similarity=0.916 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy8301 12 TNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66 (157)
Q Consensus 12 t~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~ 66 (157)
...+..|+..||..|..++||+..+|.+||..+||++++|+|||||||+|+|+..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 4689999999999999999999999999999999999999999999999998843
No 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.78 E-value=1.7e-19 Score=122.33 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHH------------------hC---CChhHHHHHHHHHHHHH
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKE------------------IN---LSPTQVKIWFQNRRYKQ 62 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~------------------l~---l~~~~VqvWFqNrR~k~ 62 (157)
+++.||.|+.|+..|+.+||..|..++||+..+|++||.. +| |++.+|++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4677889999999999999999999999999999999999 88 99999999999999987
Q ss_pred HH
Q psy8301 63 KR 64 (157)
Q Consensus 63 rr 64 (157)
++
T Consensus 86 k~ 87 (99)
T 1lfb_A 86 AF 87 (99)
T ss_dssp SC
T ss_pred HH
Confidence 65
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.76 E-value=5.9e-19 Score=128.85 Aligned_cols=61 Identities=26% Similarity=0.361 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.++||.||.|+..|+..||..|..++||+..++++||..+||++.+|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3567889999999999999999999999999999999999999999999999999999973
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.1e-19 Score=110.10 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 10 MRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 10 ~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
.+...+..|+..||..|..++||+..++++||..+||++++|+|||||||+|.++
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 3456789999999999999999999999999999999999999999999998554
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=8e-19 Score=109.74 Aligned_cols=50 Identities=22% Similarity=0.352 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHh-hhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 15 IQSQVFELERKF-QHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 15 t~~q~~~Le~~F-~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
...|+..||+.| ..++||+..+|.+||..+||++++|+|||||||+|+|+
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred CchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 356899999999 67999999999999999999999999999999999876
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.73 E-value=2e-18 Score=127.02 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.+.||.||.|+..|+..|+..|..++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccccc
Confidence 3568899999999999999999999999999999999999999999999999999998873
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=4.6e-17 Score=102.91 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHhh---hcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 12 TNGIQSQVFELERKFQ---HIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 12 t~~t~~q~~~Le~~F~---~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
..|+.+|+.+|+.+|. .++||+..++++||..+||++.+|++||+|+|+|+++.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~ 59 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQP 59 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHH
Confidence 3699999999999999 99999999999999999999999999999999999873
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.64 E-value=6.1e-17 Score=121.91 Aligned_cols=60 Identities=25% Similarity=0.298 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC---------------------CChhHHHHHHHHHHHHHH
Q psy8301 5 HRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEIN---------------------LSPTQVKIWFQNRRYKQK 63 (157)
Q Consensus 5 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~---------------------l~~~~VqvWFqNrR~k~r 63 (157)
++.||.|+.|+..|+.+|+..|..++||+..+|++||..++ |++.+|++||||||++++
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 56789999999999999999999999999999999999999 999999999999999865
Q ss_pred H
Q psy8301 64 R 64 (157)
Q Consensus 64 r 64 (157)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 3
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.60 E-value=9.5e-16 Score=116.85 Aligned_cols=58 Identities=26% Similarity=0.319 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC---------------------CChhHHHHHHHHHHHH
Q psy8301 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEIN---------------------LSPTQVKIWFQNRRYK 61 (157)
Q Consensus 4 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~---------------------l~~~~VqvWFqNrR~k 61 (157)
+++.||.|+.|++.|+.+|+.+|..++||+..+|++||..+| |++.+|++||+|||++
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 467889999999999999999999999999999999999988 8999999999999975
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=94.44 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 16 QSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 16 ~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
.+|+..|+.+|..+++|+..++..||..+||+.++|+|||+|||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=96.31 Aligned_cols=58 Identities=24% Similarity=0.202 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhh
Q psy8301 12 TNGIQSQVFELERKFQH---IRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQAMN 69 (157)
Q Consensus 12 t~~t~~q~~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~~~ 69 (157)
..|+.++..+|+.+|.. ++||+..++++||..+||++.||++||+|+|.|+++.....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 46899999999999987 99999999999999999999999999999999998866544
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.43 E-value=4.6e-14 Score=115.54 Aligned_cols=55 Identities=27% Similarity=0.462 Sum_probs=51.9
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q psy8301 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63 (157)
Q Consensus 9 r~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~r 63 (157)
+.|+.++..|+..|++.|..++||+..+|++||..+||+++||++||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4467899999999999999999999999999999999999999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.68 E-value=3.8e-10 Score=62.45 Aligned_cols=21 Identities=52% Similarity=0.795 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q psy8301 49 TQVKIWFQNRRYKQKRLQAMN 69 (157)
Q Consensus 49 ~~VqvWFqNrR~k~rr~~~~~ 69 (157)
+||+|||||||+|||+.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 479999999999999977653
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.72 E-value=0.018 Score=35.73 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHH
Q psy8301 15 IQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 15 t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFq 56 (157)
++.-.+.|+.+|...+.........|..+.+|+..+|+.||-
T Consensus 14 ~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 14 PPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 334467899999999999999999999999999999999995
No 80
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=93.20 E-value=0.0015 Score=43.16 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=40.5
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCccccCC
Q psy8301 43 EINLSPTQVKIWFQNRRYKQKRLQAMNQNSNGKNVFKIKHIFTRKTKPTSAQATIGCPEAKKIGRKPETDFPAEEHNIFV 122 (157)
Q Consensus 43 ~l~l~~~~VqvWFqNrR~k~rr~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~p~~~~~~~~~~~~~~~~q~~~~~ 122 (157)
.++.+..+|..||++.|..-+... . ..+ .........+.|+..|...|.
T Consensus 2 ~~~~~~~~~~~W~~~~r~~~~~~~------------------------~------~~~-~~~~~rr~Rt~ft~~Ql~~Le 50 (97)
T 1b72_A 2 EPNTPTARTFDWMKVKRNPPKTAK------------------------V------SEP-GLGSPSGLRTNFTTRQLTELE 50 (97)
T ss_dssp ------CCCCGGGGC---------------------------------------------------CCCCCCHHHHHHHH
T ss_pred CCCCCCcccccccccccCCCCCCC------------------------C------CCC-CCCCCCCCCcCcCHHHHHHHH
Confidence 356777888899999887633210 0 000 112344556889999999999
Q ss_pred CCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 123 PNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 123 ~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
..|..+.| |+...+++|+..+
T Consensus 51 ~~F~~~~y-----p~~~~r~~LA~~l 71 (97)
T 1b72_A 51 KEFHFNKY-----LSRARRVEIAATL 71 (97)
T ss_dssp HHHTTCSS-----CCHHHHHHHHHHH
T ss_pred HHHhccCC-----CCHHHHHHHHHHh
Confidence 99999999 9999999999875
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=90.14 E-value=1.3 Score=27.79 Aligned_cols=46 Identities=7% Similarity=0.206 Sum_probs=33.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHH
Q psy8301 7 AGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQN 57 (157)
Q Consensus 7 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqN 57 (157)
+++.+..|+.++.......+.. .. ...++|..+|++...|..|...
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 4456778999886554455543 22 3568899999999999999853
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=86.86 E-value=2.4 Score=28.24 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 10 MRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 10 ~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
.|..+|.++...+-..+..+.... ..++|..+|++...|..|..++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 567899999877766665554443 3468999999999999999876654
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=86.57 E-value=1.1 Score=26.00 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHH
Q psy8301 11 RTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQN 57 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqN 57 (157)
|..|+.+........+.. .........++|..+|++...|..|.+.
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 457888887666544443 3321112668999999999999999753
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=86.16 E-value=3.8 Score=25.69 Aligned_cols=48 Identities=6% Similarity=0.009 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy8301 14 GIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66 (157)
Q Consensus 14 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~ 66 (157)
++..+..+|.-.|-.. ..-.++|..+|++...|+.+...-|.+.|+.-
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 5677777777654332 25778999999999999999987777766644
No 85
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=85.40 E-value=0.15 Score=31.83 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=35.4
Q ss_pred CCCCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 103 KKIGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 103 ~~~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
........+.|+..|..+|...|..++| |+...+++|+.++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~y-----p~~~~r~~La~~l 54 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSN-----PTRKMLDHIAHEV 54 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSS-----CCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHH
Confidence 3445667788999999999999999999 9999999999875
No 86
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=84.96 E-value=0.16 Score=32.14 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCcCccccCCCCCCC-----CcCCCCCCCCchhHHHhhhcc
Q psy8301 104 KIGRKPETDFPAEEHNIFVPNFDQ-----SDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 104 ~~~~~~~~~~~~~q~~~~~~~f~~-----~~~s~s~~p~~~~~~~l~~~~ 148 (157)
.......+.|+..|...|. .|.. ++| |+...+++|+...
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~y-----p~~~~r~~La~~l 58 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQK-----HDDVAVEQFCAET 58 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCS-----STTHHHHHHHHHS
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCC-----CCHHHHHHHHHHh
Confidence 3455677899999999999 8999 999 9999999999875
No 87
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.00 E-value=0.13 Score=32.26 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 104 KIGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 104 ~~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
.......+.|+..|...|...|..++| |+...+++|+..+
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~y-----p~~~~r~~LA~~l 54 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKY-----LSTPDRIDLAESL 54 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHh
Confidence 445667788999999999999999999 9999999999875
No 88
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=82.55 E-value=0.098 Score=32.42 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=36.1
Q ss_pred CCCCCCCCCCCcCccccCCCCCCC-CcCCCCCCCCchhHHHhhhcc
Q psy8301 104 KIGRKPETDFPAEEHNIFVPNFDQ-SDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 104 ~~~~~~~~~~~~~q~~~~~~~f~~-~~~s~s~~p~~~~~~~l~~~~ 148 (157)
+....+.+.++..|+.++..+|+. +.+ |+..++++|+.+.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~y-----Pd~~~r~~La~~t 45 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLY-----PDQEAIHTLSAQL 45 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSC-----CCHHHHHHHHHHS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHh
Confidence 456677899999999999999999 999 9999999999875
No 89
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=82.47 E-value=0.22 Score=31.39 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=36.2
Q ss_pred CCCCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhccC
Q psy8301 103 KKIGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQYV 149 (157)
Q Consensus 103 ~~~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~~ 149 (157)
........+.|+..|...|...|..+.| |+...+++|+..+.
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~y-----p~~~~r~~La~~l~ 60 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKY-----LSLQQMQELSNILN 60 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSS-----CCHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHcC
Confidence 3445667788999999999999999999 99999999998763
No 90
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=79.71 E-value=5 Score=21.12 Aligned_cols=39 Identities=8% Similarity=0.078 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFq 56 (157)
.++..+...+...+... + ...++|..+|++...|..|.+
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHh
Confidence 46777765554555432 2 366889999999999999985
No 91
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=79.54 E-value=6.7 Score=22.70 Aligned_cols=47 Identities=6% Similarity=-0.219 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
.+++.+..+|.-.|-.. ..-.++|..+|++...|..+...-+.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47788888888765433 246789999999999999998765555544
No 92
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=79.33 E-value=0.46 Score=29.26 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=35.0
Q ss_pred CCCCCCCCCCCCCcCccccCCCCC-CCCcCCCCCCCCchhHHHhhhcc
Q psy8301 102 AKKIGRKPETDFPAEEHNIFVPNF-DQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 102 ~~~~~~~~~~~~~~~q~~~~~~~f-~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
+...|......+...|...+...| ..+.| |+...+++|+.++
T Consensus 4 ~~~~g~k~r~r~~~~ql~~LE~~F~~~~~y-----p~~~~r~~LA~~l 46 (72)
T 2cqx_A 4 GSSGGIKDSPVNKVEPNDTLEKVFVSVTKY-----PDEKRLKGLSKQL 46 (72)
T ss_dssp CCCCCCCCCCCSCSCSTTHHHHHHHHTCSS-----CCHHHHHHHHHHT
T ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhcCCC-----cCHHHHHHHHHHh
Confidence 444566666677888999999999 99999 9999999999876
No 93
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.00 E-value=0.23 Score=30.27 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=34.6
Q ss_pred CCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 105 IGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 105 ~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
......+.++..|..+|...|..++| |+..++++|+..+
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~y-----p~~~~r~~La~~l 44 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKTQY-----LALPERAELAASL 44 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTCSS-----CCHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCCCC-----CCHHHHHHHHHHh
Confidence 34566788999999999999999999 9999999999876
No 94
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=77.07 E-value=0.28 Score=30.93 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=34.4
Q ss_pred CCCCCCCCCCcCccccCCCCCCC----CcCCCCCCCCchhHHHhhhcc
Q psy8301 105 IGRKPETDFPAEEHNIFVPNFDQ----SDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 105 ~~~~~~~~~~~~q~~~~~~~f~~----~~~s~s~~p~~~~~~~l~~~~ 148 (157)
......+.|+..|...|...|.. ++| |+...+++|+...
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~y-----p~~~~r~~La~~l 58 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQR-----QDDEVIQRFCQET 58 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCT-----TTHHHHHHHHHHS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCC-----cCHHHHHHHHHHh
Confidence 45567789999999999999998 999 9999999999875
No 95
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=76.04 E-value=9.5 Score=22.59 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~r 63 (157)
.+++.+..+|...|-.... ....-.++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788888999888741100 1124578999999999999998876555544
No 96
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=75.64 E-value=9.6 Score=25.15 Aligned_cols=48 Identities=10% Similarity=-0.046 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.+++.+..++.-.|... ..-.++|..+|++...|+.|...-|.+.++.
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 46788888887765443 2467899999999999999998777776653
No 97
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=75.05 E-value=0.15 Score=32.05 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=31.0
Q ss_pred CCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 109 PETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 109 ~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
....++..|..+|...|..++| |+.+++++|+...
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~Y-----Ps~~er~~LA~~t 40 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQW-----ARREDYQKLEQIT 40 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHH
Confidence 3456889999999999999999 9999999999764
No 98
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=74.97 E-value=12 Score=24.08 Aligned_cols=45 Identities=11% Similarity=-0.071 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 11 RTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
...+++.+..+|.-.++-- .-.++|..+|+++..|+.+..+=+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4569999999997765322 34889999999999999988754444
No 99
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=74.83 E-value=0.24 Score=29.87 Aligned_cols=37 Identities=27% Similarity=0.552 Sum_probs=32.5
Q ss_pred CCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 107 RKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 107 ~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
....+.++..|...|...|..++| |+...+++|+.+.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~y-----p~~~~r~~La~~l 38 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCY-----PGIDILEDLAQKL 38 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSS-----CCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHH
Confidence 345678888999999999999999 9999999999876
No 100
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=74.32 E-value=0.39 Score=30.00 Aligned_cols=39 Identities=18% Similarity=0.401 Sum_probs=34.6
Q ss_pred CCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 105 IGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 105 ~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
......+.|+..|...|...|..++| |+...+++|+..+
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~y-----p~~~~r~~LA~~l 44 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTHY-----PDVFARERLAAKI 44 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCSS-----CCHHHHHHHHHHT
T ss_pred CCCCCCCccCHHHHHHHHHHHhccCC-----CCHHHHHHHHHHh
Confidence 35566788999999999999999999 9999999999876
No 101
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=73.59 E-value=0.29 Score=30.37 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=34.8
Q ss_pred CCCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 104 KIGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 104 ~~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
.......+.++..|...|...|..+.| |+...+++|+.++
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~y-----p~~~~r~~LA~~l 50 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMY-----LTRDRRYEVARLL 50 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCC-----CCHHHHHHHHHHH
Confidence 345566788999999999999999999 9999999999875
No 102
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=73.34 E-value=0.22 Score=30.30 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=34.5
Q ss_pred CCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 105 IGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 105 ~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
......+.|+..|..+|...|..++| |+...+++|+..+
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~y-----p~~~~r~~LA~~l 44 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAANKF-----ITKDKRRKISAAT 44 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHH
Confidence 35566788999999999999999999 9999999999876
No 103
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=73.05 E-value=10 Score=23.74 Aligned_cols=42 Identities=5% Similarity=0.151 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHhhhc-CCCCHHHHHHHHHHhCCChhHHHHHHH
Q psy8301 11 RTNGIQSQVFELERKFQHI-RYLSPTEREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F~~~-~~p~~~~r~~La~~l~l~~~~VqvWFq 56 (157)
|..|+.++....-..+... . ....++|..+|++...|..|.+
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHH
Confidence 3568888865444444322 2 2367889999999999999985
No 104
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=72.69 E-value=13 Score=24.83 Aligned_cols=47 Identities=9% Similarity=-0.096 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q psy8301 14 GIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66 (157)
Q Consensus 14 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~ 66 (157)
+++.+..+|. .|- ....-.++|..+|++...|+.+...=|.+.|+.-
T Consensus 110 L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 110 FSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp SCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4556666666 322 2235788999999999999999987666666543
No 105
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=72.37 E-value=8.7 Score=24.28 Aligned_cols=44 Identities=11% Similarity=0.022 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQ 62 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~ 62 (157)
.++..+..+|.-.++-- ...++|..+|+++..|+.+..+=+.|.
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 47888988888763322 357899999999999999887544443
No 106
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=71.55 E-value=0.26 Score=29.92 Aligned_cols=39 Identities=18% Similarity=0.402 Sum_probs=34.3
Q ss_pred CCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 105 IGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 105 ~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
......+.|+..|..+|...|..++| |+..++++|+..+
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~y-----p~~~~r~~LA~~l 44 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDINNS-----PSEEQIKEMADKS 44 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHCSS-----CCTTHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHh
Confidence 34566788999999999999999999 9999999999875
No 107
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.51 E-value=0.23 Score=30.17 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=34.0
Q ss_pred CCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 106 GRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 106 ~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
.....+.|+..|...|...|..++| |+..++++|+..+
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~~y-----p~~~~r~~LA~~l 44 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQETKY-----PDVGTREQLARKV 44 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCC-----CCHHHHHHHHHHH
Confidence 4566788999999999999999999 9999999999875
No 108
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=71.42 E-value=0.27 Score=29.86 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=34.4
Q ss_pred CCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 105 IGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 105 ~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
......+.++..|..+|...|..++| |+..++++|+..+
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~y-----p~~~~r~~LA~~l 44 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDANAY-----PKDDEFEQLSNLL 44 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHh
Confidence 34566788999999999999999999 9999999999876
No 109
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=70.82 E-value=1.4 Score=24.00 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQN 57 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqN 57 (157)
.++.++...+...+... ....++|..+|++...|..|+..
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHH
Confidence 35566655555555432 24568899999999999999853
No 110
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.70 E-value=0.45 Score=31.62 Aligned_cols=38 Identities=8% Similarity=0.194 Sum_probs=34.4
Q ss_pred CCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 106 GRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 106 ~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
.+...+.++..|..+|...|..+.| |+...+++|+..+
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~~~y-----Ps~~~Re~LA~~l 43 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDRQKN-----PSKEEREALVEEC 43 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTTCSS-----CCHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcCCCC-----CCHHHHHHHHHHH
Confidence 4566788899999999999999999 9999999999987
No 111
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=70.57 E-value=11 Score=22.02 Aligned_cols=46 Identities=15% Similarity=0.055 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 10 MRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 10 ~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
.-..+++.+..+|.-.++ .+ .-.++|..+|++...|..+..+=+.|
T Consensus 8 ~~~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 8 SKPLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345689999999987432 22 45789999999999999988754444
No 112
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=70.28 E-value=14 Score=24.27 Aligned_cols=48 Identities=13% Similarity=-0.097 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
.+++.+..+|.-.|-.. ..-.++|..+|++...|+.+...-|.+.+..
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 36677777777664333 2567899999999999999998777776653
No 113
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=70.25 E-value=8.3 Score=22.52 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQ 62 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~ 62 (157)
.+++.+..+|.-.|..+.+-+ ..-.++|..+|++...|+.+...-+.|.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKL 53 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 478888889888873211111 3467899999999999999876444443
No 114
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=69.91 E-value=0.39 Score=28.98 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=33.1
Q ss_pred CCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhccC
Q psy8301 107 RKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQYV 149 (157)
Q Consensus 107 ~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~~ 149 (157)
....+.++..|...|...|..++| |+...+++|+..+.
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~~~y-----p~~~~r~~La~~l~ 41 (68)
T 1yz8_P 4 RRQRTHFTSQQLQQLEATFQRNRY-----PDMSTREEIAVWTN 41 (68)
T ss_dssp SCSCCCCCHHHHHHHHHHHTTCSS-----CCTTTTTHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHccCC-----CCHHHHHHHHHHHC
Confidence 455678899999999999999999 99999999998763
No 115
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=69.58 E-value=0.17 Score=32.91 Aligned_cols=42 Identities=12% Similarity=0.144 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 102 AKKIGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 102 ~~~~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
....+....+.++..|...|...|..+.| |+...+++|+.++
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~y-----p~~~~r~~LA~~l 62 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVRTQW-----PSPEEYDKLAKES 62 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHh
Confidence 34445567788999999999999999999 9999999999875
No 116
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=68.82 E-value=0.64 Score=27.58 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=32.7
Q ss_pred CCCCCCCCCcCccccCCCCC---CCCcCCCCCCCCchhHHHhhhcc
Q psy8301 106 GRKPETDFPAEEHNIFVPNF---DQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 106 ~~~~~~~~~~~q~~~~~~~f---~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
+....+.++..|..+|...| ..++| |+.+++++|+.+.
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~y-----p~~~~r~~La~~~ 43 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPY-----PSEEAKEELAKKC 43 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCC-----CCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCC-----CCHHHHHHHHHHH
Confidence 44556778889999999999 89999 9999999999875
No 117
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=68.46 E-value=0.34 Score=29.43 Aligned_cols=38 Identities=11% Similarity=0.200 Sum_probs=33.5
Q ss_pred CCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 106 GRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 106 ~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
.....+.++..|..+|...|..++| |+..++++|+.++
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~~~y-----p~~~~r~~La~~l 44 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFETQKY-----LSPPERKRLAKML 44 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHH
Confidence 4455678999999999999999999 9999999999876
No 118
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=66.82 E-value=0.48 Score=29.36 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=34.3
Q ss_pred CCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 105 IGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 105 ~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
......+.++..|...|...|..+.| |+...+++|+..+
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~~~y-----p~~~~r~~La~~l 46 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQQRY-----LSAPEREHLASLI 46 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSC-----CCHHHHHHHHHHT
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcCC-----CCHHHHHHHHHHh
Confidence 34566788999999999999999999 9999999999876
No 119
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=66.68 E-value=13 Score=22.93 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~r 63 (157)
.+++.+..+|...|-...- ....-.++|..+|++...|+.+...-+.+.|
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4678888888877641100 1135678899999999999998865444443
No 120
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.25 E-value=0.42 Score=29.78 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=34.2
Q ss_pred CCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 106 GRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 106 ~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
.....+.|+..|...|...|..++| |+..++++|+.++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~y-----p~~~~r~~La~~l 44 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAINHN-----PDAKDLKQLAQKT 44 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHh
Confidence 4566788999999999999999999 9999999999876
No 121
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=66.07 E-value=15 Score=22.40 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
.++..+..+|.-.++- ..-.++|..+|+++..|+.+..+=+.|
T Consensus 21 ~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5788888888874322 356789999999999999988755444
No 122
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=65.69 E-value=0.41 Score=29.87 Aligned_cols=39 Identities=21% Similarity=0.396 Sum_probs=34.4
Q ss_pred CCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 105 IGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 105 ~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
......+.|+..|..+|...|..++| |+...+++|+..+
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~y-----p~~~~r~~La~~l 44 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAKTRY-----PDIFMREEVALKI 44 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCC-----CCHHHHHHHHHHH
Confidence 34566788999999999999999999 9999999999876
No 123
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=65.02 E-value=0.26 Score=29.57 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=32.6
Q ss_pred CCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 107 RKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 107 ~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
....+.++..|...|...|..++| |+..++++|+.+.
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~~~y-----p~~~~r~~La~~l 40 (66)
T 1bw5_A 4 TRVRTVLNEKQLHTLRTCYAANPR-----PDALMKEQLVEMT 40 (66)
T ss_dssp SCCCCCCSHHHHHHHHHHHHHCSC-----CCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCC-----cCHHHHHHHHHHH
Confidence 455678899999999999999999 9999999999875
No 124
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=64.52 E-value=0.68 Score=29.86 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=34.5
Q ss_pred CCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 105 IGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 105 ~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
......+.|+..|...|...|..++| |+...+++|+...
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~y-----p~~~~r~~LA~~l 54 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKY-----LASAERAALARGL 54 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSC-----CCHHHHHHHHHTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHh
Confidence 35566788999999999999999999 9999999999875
No 125
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=64.34 E-value=0.41 Score=29.42 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 104 KIGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 104 ~~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
..+....+.++..|...|...|..++| |+...+++|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~y-----p~~~~r~~LA~~l 44 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKF-----ITKDKRRRISATT 44 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSC-----CCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCC-----cCHHHHHHHHHHH
Confidence 345667788999999999999999999 9999999999875
No 126
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=64.22 E-value=18 Score=25.01 Aligned_cols=46 Identities=7% Similarity=-0.070 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 15 IQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 15 t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
++.+..+|.-.|-.. ..-.++|..+|++...|+.+...-|.+.|+.
T Consensus 142 ~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 142 PEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp CHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 444444554433222 3467899999999999999998767666653
No 127
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=63.26 E-value=19 Score=25.77 Aligned_cols=47 Identities=9% Similarity=0.023 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q psy8301 14 GIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65 (157)
Q Consensus 14 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~ 65 (157)
+++.+..+|.-.|-.. ....++|..+|++...|+.+...=|.+.|+.
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 5666667776665332 3567899999999999999998777766653
No 128
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=63.22 E-value=22 Score=22.62 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHh-hhc-CCCC-HHHHHHHHHHhCCChhHHHHHHH
Q psy8301 11 RTNGIQSQVFELERKF-QHI-RYLS-PTEREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F-~~~-~~p~-~~~r~~La~~l~l~~~~VqvWFq 56 (157)
+..|+.++....-..+ ... .|.+ .....++|..+|++...|..|.+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 3468888865443333 322 1222 14577899999999999999975
No 129
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=63.13 E-value=0.58 Score=28.23 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=31.9
Q ss_pred CCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 108 KPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 108 ~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
...+.++..|...|...|..++| |+...+++|+..+
T Consensus 4 r~Rt~ft~~Q~~~Le~~F~~~~y-----p~~~~r~~La~~l 39 (68)
T 1zq3_P 4 RTRTTFTSSQIAELEQHFLQGRY-----LTAPRLADLSAKL 39 (68)
T ss_dssp CCSCCCCHHHHHHHHHHHTTCSS-----CCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHhcCCC-----cCHHHHHHHHHHh
Confidence 45577889999999999999999 9999999999875
No 130
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=61.81 E-value=0.41 Score=30.06 Aligned_cols=39 Identities=8% Similarity=0.102 Sum_probs=31.7
Q ss_pred CCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 105 IGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 105 ~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
......+.++..|...|...|..+.| |+...+++|+..+
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~y-----p~~~~r~~LA~~l 57 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHY-----LTRRRRIEMAHAL 57 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHH
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHh
Confidence 34566788999999999999999999 9999999999875
No 131
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=61.22 E-value=0.5 Score=28.83 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=31.3
Q ss_pred CCCCCCCcCccccCCCCCCC-CcCCCCCCCCchhHHHhhhcc
Q psy8301 108 KPETDFPAEEHNIFVPNFDQ-SDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 108 ~~~~~~~~~q~~~~~~~f~~-~~~s~s~~p~~~~~~~l~~~~ 148 (157)
...+.++..|...|...|.. ++| |+...+++|+.++
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~y-----p~~~~r~~LA~~l 39 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKH-----PDPTTLCLIAAEA 39 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSS-----CCHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHH
Confidence 45577888899999999996 999 9999999999875
No 132
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=60.62 E-value=0.8 Score=29.09 Aligned_cols=39 Identities=8% Similarity=0.047 Sum_probs=32.6
Q ss_pred CCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 105 IGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 105 ~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
......+.|+..|...|...|..+.| |+...+++|+..+
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~y-----p~~~~r~~La~~l 65 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNRY-----LTRRRRIEIAHAL 65 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSS-----CCHHHHHHHHHHT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccCC-----CCHHHHHHHHHHh
Confidence 35567788999999999999999999 9999999999876
No 133
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.61 E-value=0.71 Score=28.48 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=31.1
Q ss_pred CCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 110 ETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 110 ~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
.+.++..|...|...|..++| |+...+++|+.+.
T Consensus 12 R~~ft~~Ql~~Le~~F~~~~y-----p~~~~r~~La~~~ 45 (76)
T 2dn0_A 12 KNKKSHEQLSALKGSFCRNQF-----PGQSEVEHLTKVT 45 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHSSS-----CCSHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHhcCCC-----cCHHHHHHHHHHh
Confidence 577899999999999999999 9999999999875
No 134
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=59.22 E-value=2.6 Score=31.77 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=34.7
Q ss_pred CCCCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 103 KKIGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 103 ~~~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
....+...+.|+..|..++...|..++| |+...+++|+..+
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~Y-----P~~~~ReeLA~~~ 179 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKN-----PSKEEREALVEEC 179 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHH
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHH
Confidence 4456677788999999999999999999 9999999999865
No 135
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=59.02 E-value=12 Score=22.14 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 14 GIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 14 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
+++.+..+|.-.+. . ....++|..+|+++..|+.+..+=+.|
T Consensus 17 L~~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVLSAVVA--G----LPNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHHHHHTT--T----CCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 56777777766432 2 245689999999999999888755444
No 136
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.40 E-value=0.87 Score=27.29 Aligned_cols=31 Identities=6% Similarity=0.051 Sum_probs=26.9
Q ss_pred CCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 113 FPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 113 ~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
+...|...|...|..+.| |+...+++|+.++
T Consensus 10 p~~~Ql~~Le~~F~~~~y-----p~~~~r~~LA~~l 40 (64)
T 2e19_A 10 PLKNLLSLLKAYYALNAQ-----PSAEELSKIADSV 40 (64)
T ss_dssp CCHHHHHHHHHHHTTCSS-----CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCC-----cCHHHHHHHHHHh
Confidence 345688899999999999 9999999999875
No 137
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=58.26 E-value=0.49 Score=29.58 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=34.7
Q ss_pred CCCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 104 KIGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 104 ~~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
.......+.|+..|..+|...|..++| |+...+++|+.++
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~y-----p~~~~r~~LA~~l 55 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQY-----PDIYTREELAQRT 55 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHH
Confidence 345567788999999999999999999 9999999999875
No 138
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.67 E-value=0.6 Score=28.79 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=30.8
Q ss_pred CCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 109 PETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 109 ~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
....++..|...|...|..++| |+...+++|+...
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~~y-----p~~~~r~~LA~~l 44 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQNPL-----PLDEELDRLRSET 44 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCC-----CCHHHHHHHHHHh
Confidence 3456888899999999999999 9999999999875
No 139
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=56.83 E-value=5.5 Score=27.57 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
+..-...|....| . .....||+..|++...|-..|.|+-.
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHH
Confidence 4555666889998 6 78999999999999999999988743
No 140
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=56.47 E-value=0.76 Score=28.05 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=33.2
Q ss_pred CCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 106 GRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 106 ~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
.....+.++..|...|...|..++| |+..++++|+..+
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~~~y-----p~~~~r~~La~~l 46 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQKTHY-----PDVYAREQLAMRT 46 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHh
Confidence 3455678899999999999999999 9999999999875
No 141
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=56.35 E-value=22 Score=24.18 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=35.9
Q ss_pred CCCCCCCCHHHHHHHHHHh-hhcCCCCHHHHHHHHH----Hh--CCChhHHHHHHHH
Q psy8301 8 GKMRTNGIQSQVFELERKF-QHIRYLSPTEREMLGK----EI--NLSPTQVKIWFQN 57 (157)
Q Consensus 8 rr~Rt~~t~~q~~~Le~~F-~~~~~p~~~~r~~La~----~l--~l~~~~VqvWFqN 57 (157)
++.|..+|-+|...+-..+ +.++-.... +||. .. +++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5678999999998888888 566555433 4455 66 7888999999976
No 142
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=55.56 E-value=33 Score=21.37 Aligned_cols=43 Identities=7% Similarity=0.035 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHH
Q psy8301 11 RTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR 59 (157)
-..++..+..+|.-.++- ....++|..+|+++..|+....+=+
T Consensus 27 ~~~Lt~rE~~Vl~l~~~G------~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEKG------FTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp --CCCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456899999999877622 2567899999999999998776533
No 143
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=55.47 E-value=3.1 Score=30.63 Aligned_cols=41 Identities=12% Similarity=0.260 Sum_probs=33.7
Q ss_pred CCCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhccC
Q psy8301 104 KIGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQYV 149 (157)
Q Consensus 104 ~~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~~ 149 (157)
...+...+.++..|..++...|..++| |+...+++|+..+-
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~y-----p~~~~Re~la~~~~ 153 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKN-----PSKEERETLVEECN 153 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCC-----CCTTTTHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHhC
Confidence 345667788999999999999999999 99999999998763
No 144
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=54.74 E-value=14 Score=20.74 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=20.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQNRRYKQ 62 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFqNrR~k~ 62 (157)
-.++|..+|+++..|+.+..+=+.|.
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKL 41 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 46889999999999999887655443
No 145
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=54.59 E-value=7.4 Score=23.34 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFqNrR 59 (157)
..+||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999997654
No 146
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.05 E-value=1.3 Score=28.32 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=29.6
Q ss_pred CCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 110 ETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 110 ~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
...++..|..+|...|..++| |+..++++|+.+.
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~y-----p~~~~r~~La~~~ 50 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSF-----PTQAELDRLRVET 50 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHccCCC-----CCHHHHHHHHHHh
Confidence 344788899999999999999 9999999998875
No 147
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=53.99 E-value=26 Score=21.50 Aligned_cols=44 Identities=7% Similarity=0.046 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCChhHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQH-----IRYLSPTEREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~~VqvWFq 56 (157)
.++.++...++..|.. +.+.+..+-..+...+|+++..+..+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678889999999853 4577888888888888999888877764
No 148
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=53.90 E-value=34 Score=21.52 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHhh-----hcCCCCHHHHHHHHHHhC--CChhHHHHHHH
Q psy8301 10 MRTNGIQSQVFELERKFQ-----HIRYLSPTEREMLGKEIN--LSPTQVKIWFQ 56 (157)
Q Consensus 10 ~Rt~~t~~q~~~Le~~F~-----~~~~p~~~~r~~La~~l~--l~~~~VqvWFq 56 (157)
....++.++...|+.+|. .+.+.+..+...+...+| +++..|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 345689999999999984 456899999888888877 67778888885
No 149
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=53.46 E-value=29 Score=22.70 Aligned_cols=40 Identities=8% Similarity=0.089 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHH
Q psy8301 12 TNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 12 t~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFq 56 (157)
..++.++...+...+... + ...++|..+|++...|..|++
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~ 44 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLK 44 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 457788776666666433 2 356789999999999999996
No 150
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=53.29 E-value=17 Score=21.45 Aligned_cols=40 Identities=3% Similarity=0.010 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHH
Q psy8301 12 TNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 12 t~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNr 58 (157)
..++...+..+...... ...+||..+|++...|..|=..+
T Consensus 9 ~~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~ 48 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGN 48 (73)
T ss_dssp CCCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCC
Confidence 46888888888766443 46789999999999999997653
No 151
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=52.24 E-value=27 Score=21.53 Aligned_cols=43 Identities=14% Similarity=0.039 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
.+++.+..+|.-.++ .+ .-.++|..+|+++..|+.+..+-+.|
T Consensus 29 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 478888888877433 22 34678999999999999988755544
No 152
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=52.21 E-value=0.93 Score=29.22 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=34.3
Q ss_pred CCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhccC
Q psy8301 106 GRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQYV 149 (157)
Q Consensus 106 ~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~~ 149 (157)
.....+.|+..|..+|...|..++| |+...+++|+..+-
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~~~y-----P~~~~r~~lA~~l~ 45 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNENQY-----PDEAKREEIANACN 45 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHC
Confidence 4556688899999999999999999 99999999998774
No 153
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=51.70 E-value=14 Score=22.46 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFqNrR 59 (157)
..+||+.+|++...|.-|..++.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~ 35 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGE 35 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHhCCC
Confidence 78899999999999999997543
No 154
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=49.41 E-value=1.2 Score=29.13 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhc
Q psy8301 106 GRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQ 147 (157)
Q Consensus 106 ~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~ 147 (157)
.+...+.|+..|..+|...|..++| |+...+++|+..
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~~~y-----P~~~~R~eLA~~ 45 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYERQKN-----PSKEERETLVEE 45 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTTCSS-----CCHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHhcCCC-----CCHHHHHHHHHH
Confidence 4456678899999999999999999 999999999988
No 155
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=49.28 E-value=28 Score=19.00 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHH
Q psy8301 16 QSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 16 ~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFq 56 (157)
..+...+...+... + ...++|..+|++...|..|..
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 55555555554332 2 466889999999999999874
No 156
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=46.32 E-value=33 Score=21.17 Aligned_cols=43 Identities=12% Similarity=0.038 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHhh-----hcCCCCHHHHHHHHHHhCCChhHHHHHHH
Q psy8301 14 GIQSQVFELERKFQ-----HIRYLSPTEREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 14 ~t~~q~~~Le~~F~-----~~~~p~~~~r~~La~~l~l~~~~VqvWFq 56 (157)
++.++...|+..|. .+.+.+..+-..+...+|+++..+..+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57788888888884 34578888888888888999988887774
No 157
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=45.52 E-value=55 Score=20.62 Aligned_cols=40 Identities=5% Similarity=0.002 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQN 57 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqN 57 (157)
.++.++...+...+.. .+ ...++|..+|++...|..|++.
T Consensus 17 ~~s~~~r~~i~~~~~~-g~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GI----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 5777776665555543 22 2457899999999999999964
No 158
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=45.40 E-value=23 Score=21.49 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHhh-----hcCCCCHHHHHHHHHHhCCChhHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQ-----HIRYLSPTEREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~-----~~~~p~~~~r~~La~~l~l~~~~VqvWFq 56 (157)
.++..+...|+..|. .+.+.+..+...+...+|++...|..+|.
T Consensus 20 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 467788888888884 34578888888888889999988888885
No 159
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=45.00 E-value=44 Score=24.32 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 11 RTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
...+|+.+.++|.-.++- ..-+++|..+|+++..|+....+=+.|
T Consensus 173 ~~~Lt~~e~~vl~~~~~g------~s~~eIa~~l~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKG------KTASVTANLTGINARTVQHYLDKARAK 217 (236)
T ss_dssp GGSCCHHHHHHHHHHHTT------CCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 346899999999775432 245788999999999999988765554
No 160
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=44.72 E-value=12 Score=25.92 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=21.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 38 EMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 38 ~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
.++|..+|+++..|+.+...-|.+.|+
T Consensus 155 ~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 155 RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 457888899999999999876666654
No 161
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=43.68 E-value=55 Score=23.73 Aligned_cols=45 Identities=7% Similarity=-0.087 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 11 RTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
...+++.+.++|.-..+- ..-.++|..+|+++..|+...+|=+.|
T Consensus 171 ~~~Lt~~e~~vl~~~~~g------~s~~eIa~~l~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVG------KTMEEIADVEGVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCCHHHHHHHHHHTTT------CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 356999999998765322 256788999999999999988765544
No 162
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=43.52 E-value=9.1 Score=26.79 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=33.9
Q ss_pred CCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 106 GRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 106 ~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
.....+.++..|...+...|..++| |+...+++|+.++
T Consensus 96 ~rr~Rt~ft~~Q~~~Le~~F~~~~y-----ps~~~r~~LA~~l 133 (155)
T 3l1p_A 96 RKRKRTSIENRVRWSLETMFLKSPK-----PSLQQITHIANQL 133 (155)
T ss_dssp SCCCCCCCCHHHHHHHHTTTTTCSC-----CCHHHHHHHHHHT
T ss_pred CCCCCcccCHHHHHHHHHHHccCCC-----CCHHHHHHHHHHc
Confidence 4456788999999999999999999 9999999999876
No 163
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=43.23 E-value=7.8 Score=21.82 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFqNr 58 (157)
..+||..+|++...|..|..++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5789999999999999998654
No 164
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=41.23 E-value=9.1 Score=21.68 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNr 58 (157)
...+||..+|++...|..|...+
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~ 42 (68)
T 2r1j_L 20 RQAALGKMVGVSNVAISQWERSE 42 (68)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTS
T ss_pred CHHHHHHHHCCCHHHHHHHHcCC
Confidence 36789999999999999998654
No 165
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=40.06 E-value=21 Score=20.88 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=17.7
Q ss_pred HHHHHHHhCCChhHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFq 56 (157)
..++|..||++...|..|-.
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 56789999999999999975
No 166
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=39.91 E-value=25 Score=23.88 Aligned_cols=47 Identities=9% Similarity=-0.048 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
.+++.+..+|.-. |-....-.++|..+|+++..|+.+...-|.+.|+
T Consensus 93 ~Lp~~~r~vl~L~-----~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 93 RMTPLSRQALLLT-----AMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TSCTTHHHHHTTT-----SSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHH-----HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3566666666433 3333457889999999999999999755555444
No 167
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=39.79 E-value=31 Score=22.69 Aligned_cols=39 Identities=3% Similarity=0.011 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNr 58 (157)
.++...+..|...... ...+||..+|++...|..|-..+
T Consensus 70 ~~~~~~l~~~R~~~gl-------sq~~la~~~g~s~~~i~~~E~g~ 108 (133)
T 3o9x_A 70 TVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGN 108 (133)
T ss_dssp TCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHHTS
T ss_pred CCCHHHHHHHHHHcCC-------CHHHHHHHHCCCHHHHHHHHCCC
Confidence 3556666666554332 35678999999999999998764
No 168
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=39.71 E-value=15 Score=21.10 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCChhHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWF 55 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWF 55 (157)
...+||+.+|++...|..|.
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 35789999999999999997
No 169
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=39.43 E-value=19 Score=26.44 Aligned_cols=50 Identities=10% Similarity=-0.021 Sum_probs=35.6
Q ss_pred CCCCCCHHH-HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 10 MRTNGIQSQ-VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 10 ~Rt~~t~~q-~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
.|...+.++ +..-.+.|....|-. .....||+.+|++...|-.+|.|+-.
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTE 75 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHH
Confidence 345566665 445556677777655 45778899999999999999998753
No 170
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=39.15 E-value=13 Score=25.70 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=32.0
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR 59 (157)
+..-...|....| . .....||+..|++...|-.+|.|+-
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQ 57 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 3344555888888 6 6899999999999999999998874
No 171
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=39.12 E-value=65 Score=21.59 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHhh-----hcCCCCHHHHHHHHHHhCCChh
Q psy8301 10 MRTNGIQSQVFELERKFQ-----HIRYLSPTEREMLGKEINLSPT 49 (157)
Q Consensus 10 ~Rt~~t~~q~~~Le~~F~-----~~~~p~~~~r~~La~~l~l~~~ 49 (157)
.|..+|.+|+..|+.+|. .+.+.+..+-..+...+|....
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 456799999999999985 3568888888888888886554
No 172
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=38.81 E-value=9.7 Score=21.82 Aligned_cols=22 Identities=5% Similarity=0.102 Sum_probs=18.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFqNr 58 (157)
..+||..+|++...|..|..++
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~ 40 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGV 40 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 5789999999999999998643
No 173
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=38.34 E-value=16 Score=25.62 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=31.9
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
+......|.... .......||+..|++...|-.+|.|+-.
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~ 65 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKER 65 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 444455577777 6677899999999999999999998754
No 174
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=38.30 E-value=11 Score=21.96 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFqNr 58 (157)
..+||..+|++...|..|..++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~ 47 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNK 47 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5789999999999999998754
No 175
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=37.99 E-value=9.9 Score=26.27 Aligned_cols=43 Identities=7% Similarity=0.155 Sum_probs=33.1
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQ 62 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~ 62 (157)
+......|....|-. .....+|+..|++...|-.+|.|+-.=.
T Consensus 18 l~aA~~lf~e~G~~~-~t~~~IA~~agvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 18 LSASYELLLESGFKA-VTVDKIAERAKVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHcCCCHHHHHHHCCCHHHHH
Confidence 344445588888766 4588899999999999999999865544
No 176
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=37.64 E-value=78 Score=20.14 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
.+++.+..++.-.|-.+.+ ....-+++|..+|++...|+..-..-+.+.|.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3667777777777643211 12357889999999999999988765555554
No 177
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=37.09 E-value=11 Score=21.93 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNr 58 (157)
...+||..+|++...|..|..++
T Consensus 23 sq~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 23 TNLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCC
Confidence 35689999999999999998754
No 178
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=36.72 E-value=51 Score=23.38 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 12 TNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 12 t~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
..+|..+.++|+-..+. ...+++|..++++++.|++...+=|.|
T Consensus 148 ~~LT~rE~~vL~~l~~g------~s~~eIa~~l~is~~TV~~hi~~l~~K 191 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAK 191 (225)
T ss_dssp TTSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45888888888765443 246889999999999999988765544
No 179
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=36.70 E-value=35 Score=20.84 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=21.8
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhh
Q psy8301 20 FELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQAM 68 (157)
Q Consensus 20 ~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr~~~~ 68 (157)
.+.+-.|+.|+||+..--.. | =.|||-+||..+.+
T Consensus 19 RiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 19 RLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHH
Confidence 34455589999998541111 1 25889999876544
No 180
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=36.63 E-value=12 Score=21.77 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNrR 59 (157)
...+||..+|++...|..|...++
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 20 RQAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 367899999999999999987543
No 181
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=36.04 E-value=12 Score=26.80 Aligned_cols=50 Identities=6% Similarity=-0.083 Sum_probs=35.2
Q ss_pred CCCCCHHH-HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q psy8301 11 RTNGIQSQ-VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63 (157)
Q Consensus 11 Rt~~t~~q-~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~r 63 (157)
|...+.++ +..-...|.... ......||+.+|++...+-..|.|+-.=..
T Consensus 8 ~~~~~r~~Il~aA~~l~~~~G---~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 58 (213)
T 2g7g_A 8 VARLDRERIAEAALELVDRDG---DFRMPDLARHLNVQVSSIYHHAKGRAAVVE 58 (213)
T ss_dssp ---CCHHHHHHHHHHHHHHHS---SCCHHHHHHHTTSCHHHHHTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcC---CCCHHHHHHHhCCCHhHHHHHcCCHHHHHH
Confidence 34455554 445555677766 567888999999999999999998765543
No 182
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=34.77 E-value=13 Score=22.25 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFqNrR 59 (157)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 56899999999999999987654
No 183
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=34.69 E-value=13 Score=21.67 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNr 58 (157)
...+||..+|++...|..|...+
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~ 47 (77)
T 2b5a_A 25 SQEELADLAGLHRTYISEVERGD 47 (77)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTC
T ss_pred CHHHHHHHHCCCHHHHHHHHCCC
Confidence 36789999999999999998653
No 184
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.39 E-value=79 Score=23.31 Aligned_cols=46 Identities=13% Similarity=-0.085 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q psy8301 12 TNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63 (157)
Q Consensus 12 t~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~r 63 (157)
..+++.+..+|.-.++. ..-+++|..+|+++..|++...+-|.|.+
T Consensus 196 ~~L~~~erevl~L~~~G------~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCIRKG------LSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 35788888888775422 25678999999999999998876555543
No 185
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=34.22 E-value=20 Score=21.43 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNrR 59 (157)
...+||..+|++...|..|..+++
T Consensus 27 sq~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 27 TQSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHCGG
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 357899999999999999997643
No 186
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=34.14 E-value=8.9 Score=26.17 Aligned_cols=39 Identities=5% Similarity=0.035 Sum_probs=30.3
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
+..-...|... .......||+..|++...|-.+|.|+-.
T Consensus 20 l~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 58 (190)
T 2v57_A 20 LDAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTD 58 (190)
T ss_dssp HHHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 33344446665 6678899999999999999999998743
No 187
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=34.07 E-value=8.9 Score=26.38 Aligned_cols=43 Identities=9% Similarity=-0.042 Sum_probs=31.8
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q psy8301 20 FELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63 (157)
Q Consensus 20 ~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~r 63 (157)
..-...|....|-. .....+|+..|++...+-..|.++-.=..
T Consensus 24 ~aa~~lf~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~ 66 (208)
T 3cwr_A 24 GAAQRLLSSGGAAA-MTMEGVASEAGIAKKTLYRFASGRADLIG 66 (208)
T ss_dssp HHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHcCHHh-ccHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 33444577777654 45778899999999999999998654433
No 188
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=34.03 E-value=15 Score=25.36 Aligned_cols=41 Identities=12% Similarity=0.288 Sum_probs=32.2
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
+......|....|-. .....||+..|++...+-.+|.++-.
T Consensus 37 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 37 IKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 445555688887765 45788899999999999999998753
No 189
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=34.02 E-value=14 Score=26.97 Aligned_cols=54 Identities=6% Similarity=-0.011 Sum_probs=36.0
Q ss_pred CCCCCCCCCHHH-HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 7 AGKMRTNGIQSQ-VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 7 ~rr~Rt~~t~~q-~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
+++.+...+.++ +..-...|....|-. .....||+.+|++...+-..|.|+-.=
T Consensus 9 ~r~~~~~~~r~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~L 63 (237)
T 2hxo_A 9 PERRQEPLSRERIVGAAVELLDTVGERG-LTFRALAERLATGPGAIYWHITGKAEL 63 (237)
T ss_dssp -------CCHHHHHHHHHHHHHHTTTTT-CCHHHHHHHHTSCGGGGGGTCCCHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHHCCChHHHHHhcCCHHHH
Confidence 344455666665 455566688877665 457788999999999999999987543
No 190
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=33.78 E-value=11 Score=26.49 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
+....+.|....|-. .....||+..|++...+-.+|.++-.=..-
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~ 78 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDDLFDQ 78 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHHHHHH
Confidence 445555688887755 557889999999999999999987655443
No 191
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=33.48 E-value=25 Score=23.89 Aligned_cols=40 Identities=13% Similarity=-0.014 Sum_probs=31.1
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 20 FELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 20 ~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
......|....|-. .....||...|++...|-..|.|+-.
T Consensus 24 ~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 63 (206)
T 3kz9_A 24 EIALEVFARRGIGR-GGHADIAEIAQVSVATVFNYFPTRED 63 (206)
T ss_dssp HHHHHHHHHSCCSS-CCHHHHHHHHTSCHHHHHHHCCSHHH
T ss_pred HHHHHHHHhcCccc-ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 34444588887765 45778899999999999999998743
No 192
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=33.35 E-value=1e+02 Score=22.97 Aligned_cols=45 Identities=16% Similarity=-0.010 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 11 RTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
...+|+.+.++|.-..+- ..-.++|..+|++++.|+....|=+.|
T Consensus 195 ~~~Lt~re~~vl~~~~~G------~s~~eIA~~l~is~~TV~~~~~~~~~k 239 (265)
T 3qp6_A 195 NMPLSQREYDIFHWMSRG------KTNWEIATILNISERTVKFHVANVIRK 239 (265)
T ss_dssp CCCCCHHHHHHHHHHHTT------CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 357999999999877432 256789999999999999988765555
No 193
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.80 E-value=16 Score=26.97 Aligned_cols=54 Identities=9% Similarity=0.047 Sum_probs=38.6
Q ss_pred CCCCCCCHHH-HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q psy8301 9 KMRTNGIQSQ-VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63 (157)
Q Consensus 9 r~Rt~~t~~q-~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~r 63 (157)
..|...+.++ +..-.+.|....|-. .....||+.+|++...+-..|.|+-.=..
T Consensus 14 ~~r~~~tr~~Il~AA~~l~~e~G~~~-~S~~~IA~~aGvs~~tlY~hF~sK~~Ll~ 68 (243)
T 2g7l_A 14 PAKPALSRRWIVDTAVALMRAEGLEK-VTMRRLAQELDTGPASLYVYVANTAELHA 68 (243)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHCSSS-CCHHHHHHHTTSCHHHHTTTCCSHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHhcCchh-cCHHHHHHHHCCChhHHHHHcCCHHHHHH
Confidence 3345566665 455566688888755 45778899999999999999998755443
No 194
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=32.45 E-value=33 Score=19.20 Aligned_cols=21 Identities=5% Similarity=0.150 Sum_probs=18.4
Q ss_pred HHHHHHHhCCChhHHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQN 57 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFqN 57 (157)
..+||..+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 578999999999999999864
No 195
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=32.32 E-value=15 Score=22.74 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNrR 59 (157)
...+||..+|++...|..|..+++
T Consensus 24 sq~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 24 TQLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHhCCC
Confidence 367899999999999999997643
No 196
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=32.31 E-value=19 Score=22.06 Aligned_cols=24 Identities=4% Similarity=0.274 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNrR 59 (157)
...+||..+|++...|..|..+++
T Consensus 23 tq~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 23 SLREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHTSS
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 357899999999999999997653
No 197
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=32.29 E-value=17 Score=21.98 Aligned_cols=24 Identities=4% Similarity=0.065 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNrR 59 (157)
...+||..+|++...|..|..+++
T Consensus 33 sq~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 33 TQFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCG
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 367899999999999999997654
No 198
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=32.20 E-value=29 Score=21.03 Aligned_cols=21 Identities=5% Similarity=0.316 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCChhHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFq 56 (157)
...++|+.+|++...|+-|-+
T Consensus 7 ~i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAWER 27 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHH
Confidence 356889999999999999953
No 199
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=31.94 E-value=15 Score=21.46 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFqNrR 59 (157)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999987654
No 200
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=31.72 E-value=2.1 Score=30.30 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=32.5
Q ss_pred CCCCCCCCCCcCccccCCCCCCCCcCCCCCCCCchhHHHhhhcc
Q psy8301 105 IGRKPETDFPAEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQY 148 (157)
Q Consensus 105 ~~~~~~~~~~~~q~~~~~~~f~~~~~s~s~~p~~~~~~~l~~~~ 148 (157)
..+...+.|+..|...+...|..++| |+...+++|+.+.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~y-----p~~~~r~~LA~~l 138 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQK-----PTSEDITLIAEQL 138 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSS-----CCHHHHHHHHHHH
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCC-----CCHHHHHHHHHHH
Confidence 45667788999999999999999999 9999999999875
No 201
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=31.69 E-value=14 Score=25.75 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=32.5
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
++.-...|....|-. .....+|+..|++...|-..|.|+-.
T Consensus 15 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~gtlY~~F~sKe~ 55 (203)
T 2np5_A 15 AAALFDVAAESGLEG-ASVREVAKRAGVSIGAVQHHFSTKDE 55 (203)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 455556688887765 45788899999999999999998753
No 202
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=31.28 E-value=13 Score=25.58 Aligned_cols=39 Identities=8% Similarity=0.119 Sum_probs=32.4
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR 59 (157)
+......|....| . .....||+..|++...+-..|.|+-
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~ 60 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRW 60 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHH
Confidence 4445556888899 6 6899999999999999999998874
No 203
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=30.52 E-value=89 Score=21.02 Aligned_cols=40 Identities=5% Similarity=-0.129 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHH
Q psy8301 12 TNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 12 t~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFq 56 (157)
..++.++...+...+... + ...++|..+|++...|..|++
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 467888766665666533 2 355789999999999999995
No 204
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=30.18 E-value=1e+02 Score=21.29 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQ 62 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~ 62 (157)
.+|..+.++|+-..+.. ..+++|..++++++.|.+...|=|.|.
T Consensus 154 ~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~Kl 197 (215)
T 1a04_A 154 QLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKKM 197 (215)
T ss_dssp GSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 48888888887665431 478899999999999999887766653
No 205
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=29.84 E-value=46 Score=20.66 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHH
Q psy8301 34 PTEREMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 34 ~~~r~~La~~l~l~~~~VqvWFqNr 58 (157)
.....+||..+|++++.++..|+..
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3467889999999999998888654
No 206
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=29.65 E-value=36 Score=23.25 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=32.6
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
+......|....|-.. ....||+..|++...+-..|.++-.
T Consensus 22 l~aa~~lf~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~ 62 (213)
T 2qtq_A 22 LQTASNIMREGDVVDI-SLSELSLRSGLNSALVKYYFGNKAG 62 (213)
T ss_dssp HHHHHHHHHHHTSSCC-CHHHHHHHHCCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHcCcccc-cHHHHHHHhCCChhhHhHhcCCHHH
Confidence 4555566888887664 4778899999999999999998743
No 207
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=29.48 E-value=40 Score=19.12 Aligned_cols=23 Identities=17% Similarity=-0.000 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNr 58 (157)
...+||..+|++...|..|..++
T Consensus 28 s~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 28 SQETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCC
Confidence 36789999999999999998653
No 208
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=29.26 E-value=1.2e+02 Score=19.87 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=35.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHh-CCChhHHHHHHHH
Q psy8301 1 MFQSHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEI-NLSPTQVKIWFQN 57 (157)
Q Consensus 1 ~~~~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l-~l~~~~VqvWFqN 57 (157)
|++..++...|..+|++.-..|......... + =..+|..+ |=+..+++.-+.|
T Consensus 1 m~q~~~~~~kk~~WT~eED~~L~~~v~~~G~-~---W~~Ia~~~~~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 1 MVQVNLKAAKKQKFTPEEDEMLKRAVAQHGS-D---WKMIAATFPNRNARQCRDRWKN 54 (126)
T ss_dssp -CCBC-CBCSSCCCCHHHHHHHHHHHHHHTT-C---HHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhCC-C---HHHHHHHcCCCCHHHHHHHHhh
Confidence 6677777788899999999999888776543 3 34456666 6666676654443
No 209
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=29.16 E-value=23 Score=25.57 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=31.1
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
++...+.|....|-. .....||+..|++...|-..|.++-.
T Consensus 49 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~ 89 (255)
T 3g1o_A 49 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEA 89 (255)
T ss_dssp HHHHHHHHTTSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCcc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 444455577776654 45778899999999999999998743
No 210
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=29.10 E-value=27 Score=23.94 Aligned_cols=39 Identities=8% Similarity=0.085 Sum_probs=31.1
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNr 58 (157)
+......|....|-. .....||+..|++...+-..|.|+
T Consensus 23 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK 61 (207)
T 2rae_A 23 STVGIELFTEQGFDA-TSVDEVAEASGIARRTLFRYFPSK 61 (207)
T ss_dssp HHHHHHHHHHHCTTT-SCHHHHHHHTTSCHHHHHHHCSST
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcchHhhhCCCH
Confidence 445555688888755 457889999999999999999876
No 211
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.05 E-value=45 Score=23.05 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=33.9
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQ 62 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~ 62 (157)
+..-...|....|-. .....+|+..|++...|-..|.|+-.=.
T Consensus 17 l~aA~~lF~~~Gy~~-ts~~~IA~~aGvsk~tlY~~F~sKe~L~ 59 (202)
T 2i10_A 17 LQTAMELFWRQGYEG-TSITDLTKALGINPPSLYAAFGSKRDLF 59 (202)
T ss_dssp HHHHHHHHHHHTTTT-CCHHHHHHHHTCCHHHHHHHHCSHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCChHHHHHHhCCHHHHH
Confidence 455556688888766 4588899999999999999998875443
No 212
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=29.00 E-value=1.3e+02 Score=20.11 Aligned_cols=46 Identities=11% Similarity=-0.093 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHH-HHHH------hCCChhHHHHHHH
Q psy8301 11 RTNGIQSQVFELERKFQHIRYLSPTEREM-LGKE------INLSPTQVKIWFQ 56 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~-La~~------l~l~~~~VqvWFq 56 (157)
+..++.++...+......++..+..+... |... ..++...|..|..
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 45678878888888777666555444333 2221 2478888988885
No 213
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=29.00 E-value=17 Score=26.19 Aligned_cols=41 Identities=5% Similarity=0.015 Sum_probs=32.1
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
+......|....|-. .....||+..|++...|-..|.|+-.
T Consensus 29 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe~ 69 (231)
T 2zcx_A 29 LDAARELGTERGIRE-ITLTDIAATVGMHKSALLRYFETREQ 69 (231)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHH
Confidence 344455588888765 45788899999999999999998743
No 214
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=28.74 E-value=41 Score=19.61 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFqNrR 59 (157)
..+||..+|++...|..|-.+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57799999999999999987643
No 215
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=28.11 E-value=1.2e+02 Score=21.96 Aligned_cols=45 Identities=13% Similarity=0.042 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 11 RTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
...+|+.+.++|.-..+- ..-+++|..+|++++.|+.-..|=+.|
T Consensus 173 ~~~Lt~re~~vl~~~~~G------~s~~eIa~~l~is~~tV~~~~~~~~~k 217 (237)
T 3szt_A 173 NVRLTARETEMLKWTAVG------KTYGEIGLILSIDQRTVKFHIVNAMRK 217 (237)
T ss_dssp GCCCCHHHHHHHHHHHTT------CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC------CCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 356888888888765322 246788999999999999877654443
No 216
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=27.90 E-value=28 Score=19.76 Aligned_cols=19 Identities=5% Similarity=0.221 Sum_probs=17.2
Q ss_pred HHHHHHHhCCChhHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWF 55 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWF 55 (157)
..++|..+|++...|..|.
T Consensus 16 ~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMV 34 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 5678999999999999998
No 217
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=27.80 E-value=90 Score=18.02 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhC-CChhHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQH-----IRYLSPTEREMLGKEIN-LSPTQVKIWFQ 56 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~-l~~~~VqvWFq 56 (157)
.+++.+...|+..|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4688888899998843 44677777777766666 66777777774
No 218
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=27.79 E-value=1.1e+02 Score=19.00 Aligned_cols=42 Identities=7% Similarity=-0.001 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHh---CC-------ChhHHHHHHH
Q psy8301 12 TNGIQSQVFELERKFQHIRYLSPTEREMLGKEI---NL-------SPTQVKIWFQ 56 (157)
Q Consensus 12 t~~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l---~l-------~~~~VqvWFq 56 (157)
..++.++...+......++..+..+ |+..+ |+ +...|..|.+
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~---i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWE---IREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHH---HHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHH---HHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 4677777778877776666555443 34444 74 7788888875
No 219
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=27.66 E-value=44 Score=19.73 Aligned_cols=22 Identities=9% Similarity=0.071 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQN 57 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqN 57 (157)
...+||..+|++...|..|-.+
T Consensus 25 tq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 25 SLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 3578999999999999999876
No 220
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=27.15 E-value=17 Score=26.04 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=37.5
Q ss_pred CCCCCCCCHHH-HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q psy8301 8 GKMRTNGIQSQ-VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63 (157)
Q Consensus 8 rr~Rt~~t~~q-~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~r 63 (157)
++.|...+.+. +......|....|-. .....||...|++...|-..|.|+-.=..
T Consensus 19 ~~~r~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~~K~~L~~ 74 (211)
T 3fiw_A 19 FQGMTKMNRETVITEALDLLDEVGLDG-VSTRRLAKRLGVEQPSLYWYFRTKRDLLT 74 (211)
T ss_dssp -----CCCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHTTCSSHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 34455666665 555666688777654 45788899999999999999988755433
No 221
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=27.13 E-value=64 Score=21.04 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCChhHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFq 56 (157)
...+||..+|+++..++-|++
T Consensus 22 ~~~~la~~~~~~~~~~~~~l~ 42 (121)
T 2pjp_A 22 WVRDLAKETGTDEQAMRLTLR 42 (121)
T ss_dssp EHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 455899999999999999985
No 222
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=27.11 E-value=21 Score=25.52 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
+....+.|....|-. .....||+..|++...|-..|.|+-.=
T Consensus 50 l~aA~~lf~e~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L 91 (236)
T 3q0w_A 50 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEAV 91 (236)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCcHHHHHHHCCCHHHH
Confidence 334444577777654 457788999999999999999987543
No 223
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=26.96 E-value=1e+02 Score=18.24 Aligned_cols=58 Identities=17% Similarity=0.048 Sum_probs=38.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcC--CCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy8301 7 AGKMRTNGIQSQVFELERKFQHIR--YLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64 (157)
Q Consensus 7 ~rr~Rt~~t~~q~~~Le~~F~~~~--~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~rr 64 (157)
.++.|-+.|++.-...-.+...-. .-.+..+.++...-||+..+|..=.|..|.+.+|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 456788888876554444433322 1224455556666689999999999988887665
No 224
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=26.64 E-value=1.4e+02 Score=20.09 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHhCCChhHHHHHHHH
Q psy8301 14 GIQSQVFELERKFQH----IRYLSPTEREMLGKEINLSPTQVKIWFQN 57 (157)
Q Consensus 14 ~t~~q~~~Le~~F~~----~~~p~~~~r~~La~~l~l~~~~VqvWFqN 57 (157)
+|..++..|-..+.. +.+|+. +.||..+|++...|....++
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~---~~LA~~~~~s~~~v~~~L~~ 74 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTP---NQLQEGMSISVEECTNRLRM 74 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCH---HHHHTTSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCH---HHHHHHHCcCHHHHHHHHHH
Confidence 566666666555442 456664 57999999999999998875
No 225
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=26.41 E-value=48 Score=19.37 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFqNr 58 (157)
..+||..+|++...|..|-.++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFE 47 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 5789999999999999998654
No 226
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=26.30 E-value=92 Score=17.42 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCC--ChhHHHHHHH
Q psy8301 14 GIQSQVFELERKFQH-----IRYLSPTEREMLGKEINL--SPTQVKIWFQ 56 (157)
Q Consensus 14 ~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~l--~~~~VqvWFq 56 (157)
++..+...|+..|.. +.+.+..+...+...+|. +...|..+|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 467788888888843 446777777777777764 5556666664
No 227
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=26.10 E-value=16 Score=24.97 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=32.2
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
+......|....|-. ....+||+..|++...+-..|.|+-.=
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 61 (203)
T 3f1b_A 20 LDAAVDVFSDRGFHE-TSMDAIAAKAEISKPMLYLYYGSKDEL 61 (203)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHhCCchHHHHHHhCCHHHH
Confidence 344445588887755 457888999999999999999987543
No 228
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=26.02 E-value=26 Score=24.43 Aligned_cols=41 Identities=5% Similarity=0.057 Sum_probs=32.5
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
+......|....|- .....+|+..|++...|-.+|.|+-.=
T Consensus 18 l~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~L 58 (224)
T 1t33_A 18 IAAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKEDL 58 (224)
T ss_dssp HHHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHHH
Confidence 33444558887777 678899999999999999999987543
No 229
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=25.92 E-value=28 Score=21.15 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNrR 59 (157)
...+||..+|++...|..|..+++
T Consensus 28 sq~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 28 TQKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 357899999999999999997654
No 230
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=25.65 E-value=49 Score=19.41 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNr 58 (157)
...+||..+|++...|..|-.++
T Consensus 29 tq~elA~~~gis~~~is~~e~g~ 51 (83)
T 3f6w_A 29 TQKELAARLGRPQSFVSKTENAE 51 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHCCC
Confidence 35689999999999999998654
No 231
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=25.60 E-value=49 Score=20.50 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=18.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFqNr 58 (157)
..+||..+|++...|..|-.++
T Consensus 46 q~elA~~lgvs~~~is~~E~G~ 67 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGR 67 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCcCHHHHHHHHcCC
Confidence 5679999999999999997643
No 232
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=25.51 E-value=16 Score=26.10 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=30.9
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR 59 (157)
+.+..+.|....|-. ....+||+..|++...|-.+|.|+-
T Consensus 49 l~aA~~l~~~~G~~~-~tv~~IA~~AGvs~~t~Y~~F~sKe 88 (229)
T 3bni_A 49 LDACADLLDEVGYDA-LSTRAVALRADVPIGSVYRFFGNKR 88 (229)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcChhh-ccHHHHHHHHCCCchhHHHHcCCHH
Confidence 334444588877765 4577889999999999999999874
No 233
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=25.33 E-value=89 Score=22.03 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCChhHHHHHH
Q psy8301 14 GIQSQVFELERKF---QHIRYLSPTEREMLGKEINLSPTQVKIWF 55 (157)
Q Consensus 14 ~t~~q~~~Le~~F---~~~~~p~~~~r~~La~~l~l~~~~VqvWF 55 (157)
+|..|..+|+-.. ....||- ...+||+.+|++...|.-+.
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~--s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPP--SVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHTSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHcCCCcHHHHHHH
Confidence 6788888887663 4455652 46789999999977655444
No 234
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=25.17 E-value=49 Score=20.23 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHhCCChhHHHHHH
Q psy8301 30 RYLSPTEREMLGKEINLSPTQVKIWF 55 (157)
Q Consensus 30 ~~p~~~~r~~La~~l~l~~~~VqvWF 55 (157)
.|| ....+||..+|++...|+--.
T Consensus 22 g~~--psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 22 GAP--VKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp TSC--EEHHHHHHHHTCCHHHHHHHH
T ss_pred CCC--cCHHHHHHHHCCCHHHHHHHH
Confidence 455 457789999999987776554
No 235
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=24.63 E-value=1.1e+02 Score=17.87 Aligned_cols=24 Identities=8% Similarity=-0.000 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNrR 59 (157)
...+||..+|++...|..|-.+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 456899999999999999987654
No 236
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=24.50 E-value=30 Score=23.38 Aligned_cols=41 Identities=12% Similarity=-0.061 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
+..-...|....|- .....+|+..|++...|-..|.|+-.=
T Consensus 15 l~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L 55 (190)
T 3jsj_A 15 LEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDEL 55 (190)
T ss_dssp HHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 45556668888877 678899999999999999999987543
No 237
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=24.44 E-value=1e+02 Score=22.03 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHH
Q psy8301 16 QSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVK 52 (157)
Q Consensus 16 ~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vq 52 (157)
..-+..|...=+...|.+......+|..|+|+..+|.
T Consensus 25 ~~li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 25 AAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp GGHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHH
Confidence 3456667666566689999999999999999998764
No 238
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=24.32 E-value=46 Score=22.52 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=33.6
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQ 62 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~ 62 (157)
+......|....|-.. ...+||+..|++...+-.+|.++-.=.
T Consensus 9 l~aA~~lf~~~G~~~~-s~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 9 LEEAAKLFTEKGYEAT-SVQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 4455566888887663 478889999999999999999886543
No 239
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=24.19 E-value=56 Score=19.13 Aligned_cols=23 Identities=26% Similarity=0.148 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNr 58 (157)
...+||..+|++...|..|-.++
T Consensus 26 sq~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 26 TQEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTC
T ss_pred CHHHHHHHhCcCHHHHHHHHCCC
Confidence 45789999999999999998654
No 240
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=24.05 E-value=51 Score=20.69 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=17.3
Q ss_pred HHHHHHHhCCChhHHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQN 57 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFqN 57 (157)
...+|+.+|+++.+|--|=.+
T Consensus 27 Q~~vAe~~GvdeStISR~k~~ 47 (83)
T 1zs4_A 27 TEKTAEAVGVDKSQISRWKRD 47 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHhCCCHHHHhhhhhh
Confidence 466899999999999987543
No 241
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=24.04 E-value=64 Score=22.16 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHhh-----hcCCCCHHHHHHHHHHhCCChh
Q psy8301 11 RTNGIQSQVFELERKFQ-----HIRYLSPTEREMLGKEINLSPT 49 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F~-----~~~~p~~~~r~~La~~l~l~~~ 49 (157)
++.+|.+|+..|+.+|. .+.+.+..+-..+...+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 46799999999999984 3457888888888888876543
No 242
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=23.90 E-value=42 Score=21.64 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCChhHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFq 56 (157)
....+|..+|+++.+|-.|=.
T Consensus 25 gq~~vA~~iGV~~StISR~k~ 45 (97)
T 1xwr_A 25 GTEKTAEAVGVDKSQISRWKR 45 (97)
T ss_dssp CHHHHHHHHTCCTTTHHHHHH
T ss_pred hHHHHHHHhCCCHHHHHHHHh
Confidence 456789999999999999744
No 243
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=23.68 E-value=33 Score=21.81 Aligned_cols=23 Identities=9% Similarity=0.293 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNr 58 (157)
...+||..+|++...|..|-.++
T Consensus 24 sq~~lA~~~gis~~~i~~~e~g~ 46 (114)
T 3op9_A 24 KNHQIAELLNVQTRTVAYYMSGE 46 (114)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCC
Confidence 46789999999999999999765
No 244
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=23.62 E-value=64 Score=15.70 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhh
Q psy8301 56 QNRRYKQKRLQAM 68 (157)
Q Consensus 56 qNrR~k~rr~~~~ 68 (157)
.|||-+|+.....
T Consensus 7 RnRRRRWR~Rq~q 19 (26)
T 1etf_B 7 RNRRRRWRERQRA 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 5888888876544
No 245
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=23.44 E-value=32 Score=20.37 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCChhHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWF 55 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWF 55 (157)
...++|+.+|++...|..|-
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 46788999999999999997
No 246
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=23.23 E-value=37 Score=23.35 Aligned_cols=41 Identities=7% Similarity=0.319 Sum_probs=32.5
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
+......|....|-.. ....+|+..|++...+-..|.|+-.
T Consensus 17 l~aA~~lf~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~ 57 (216)
T 3f0c_A 17 INAAQKRFAHYGLCKT-TMNEIASDVGMGKASLYYYFPDKET 57 (216)
T ss_dssp HHHHHHHHHHHCSSSC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 4555566888887654 4778899999999999999998743
No 247
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=22.99 E-value=1.6e+02 Score=20.05 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHhCCCh-----hHHHHHHHHH
Q psy8301 31 YLSPTEREMLGKEINLSP-----TQVKIWFQNR 58 (157)
Q Consensus 31 ~p~~~~r~~La~~l~l~~-----~~VqvWFqNr 58 (157)
-.+...|.+||.+||++. ...-+|.+..
T Consensus 80 DsSl~~RkeLA~eL~~~~~~~dSA~mNiwLHk~ 112 (130)
T 2gqb_A 80 DSSLSARKELAKELGYSGDMNDSASMNIWLHKQ 112 (130)
T ss_dssp CCSHHHHHHHHHHHTCCCSSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Confidence 378899999999999773 3667799743
No 248
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=22.45 E-value=56 Score=22.43 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=31.3
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 20 FELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 20 ~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
......|....|-.. ....+|+..|++...|-..|.|+-.
T Consensus 24 ~aA~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~ 63 (218)
T 3gzi_A 24 LAARNLFIERPYAQV-SIREIASLAGTDPGLIRYYFGSKEK 63 (218)
T ss_dssp HHHHHHHHTSCCSCC-CHHHHHHHHTSCTHHHHHHHSSHHH
T ss_pred HHHHHHHHHCCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 344445888887664 5778899999999999999998743
No 249
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=22.35 E-value=27 Score=23.63 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=32.5
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
+......|....|-. .....+|+..|++...+-.+|.|+-.=
T Consensus 14 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L 55 (206)
T 3dew_A 14 MEVATELFAQKGFYG-VSIRELAQAAGASISMISYHFGGKEGL 55 (206)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHSCHHHHH
T ss_pred HHHHHHHHhcCCccc-CcHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 445555677777654 457889999999999999999987544
No 250
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=22.25 E-value=1.7e+02 Score=18.99 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=31.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCC--ChhHHHHHH
Q psy8301 8 GKMRTNGIQSQVFELERKFQH-----IRYLSPTEREMLGKEINL--SPTQVKIWF 55 (157)
Q Consensus 8 rr~Rt~~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~l--~~~~VqvWF 55 (157)
.+.+..++..++..|+..|.. +.+.+..+-..+...+|+ +...+...|
T Consensus 16 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 70 (169)
T 3qrx_A 16 KKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMI 70 (169)
T ss_dssp ----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455788999999999999853 346777777776666664 445555554
No 251
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=22.24 E-value=1.2e+02 Score=17.32 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhC--CChhHHHHHHH
Q psy8301 11 RTNGIQSQVFELERKFQH-----IRYLSPTEREMLGKEIN--LSPTQVKIWFQ 56 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~--l~~~~VqvWFq 56 (157)
...++..+...|+..|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 346889999999999853 34677777777777776 56667777774
No 252
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=22.18 E-value=62 Score=19.38 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNr 58 (157)
...+||..+|++...|..|..++
T Consensus 32 sq~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 32 SQESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCC
Confidence 35789999999999999998754
No 253
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=22.10 E-value=63 Score=18.11 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=19.0
Q ss_pred HHHHHHHHhC--CChhHHHHHHHHH
Q psy8301 36 EREMLGKEIN--LSPTQVKIWFQNR 58 (157)
Q Consensus 36 ~r~~La~~l~--l~~~~VqvWFqNr 58 (157)
...+||..+| ++...|..|-..+
T Consensus 23 sq~~lA~~~g~~is~~~i~~~e~g~ 47 (71)
T 2ewt_A 23 SLHGVEEKSQGRWKAVVVGSYERGD 47 (71)
T ss_dssp CHHHHHHHTTTSSCHHHHHHHHHTC
T ss_pred CHHHHHHHHCCcCCHHHHHHHHCCC
Confidence 3577999999 9999999998653
No 254
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=21.94 E-value=1e+02 Score=19.15 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHH
Q psy8301 35 TEREMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 35 ~~r~~La~~l~l~~~~VqvWFqNr 58 (157)
....+||..+|++...+...|+..
T Consensus 19 ~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 19 ITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Confidence 457889999999999888888754
No 255
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=21.88 E-value=65 Score=19.91 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNrR 59 (157)
...+||..+|++...|..|..+++
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 467899999999999999987643
No 256
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=21.88 E-value=1.6e+02 Score=18.61 Aligned_cols=45 Identities=9% Similarity=-0.017 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHhCCChhHHHHHHH
Q psy8301 12 TNGIQSQVFELERKFQH----IRYLSPTEREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 12 t~~t~~q~~~Le~~F~~----~~~p~~~~r~~La~~l~l~~~~VqvWFq 56 (157)
-.++.++...++..|.. +.+.+..+-..+-..+|+++..+...+.
T Consensus 7 w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~~ 55 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWE 55 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35788889999999853 4578888888888888999888777664
No 257
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=21.87 E-value=1.6e+02 Score=18.78 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHhhh------cCCCCHHHHHHHHHHhC--CChhHHHHHHH
Q psy8301 11 RTNGIQSQVFELERKFQH------IRYLSPTEREMLGKEIN--LSPTQVKIWFQ 56 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F~~------~~~p~~~~r~~La~~l~--l~~~~VqvWFq 56 (157)
-..++..++..|+..|.. +.+.+..+-..+...+| ++...+..+|.
T Consensus 9 ~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 9 VEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356899999999999843 55788888888777777 56667777774
No 258
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=21.84 E-value=1.3e+02 Score=17.54 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhC--CChhHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQH-----IRYLSPTEREMLGKEIN--LSPTQVKIWFQ 56 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~--l~~~~VqvWFq 56 (157)
.++..+...|...|.. +.+.+..+...+...+| +++..|..+|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4788889999998843 44778888887777777 55667777774
No 259
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=21.76 E-value=1.3e+02 Score=17.37 Aligned_cols=46 Identities=4% Similarity=-0.096 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHhh-----hcCCCCHHHHHHHHHHhC--CChhH---HHHHHH
Q psy8301 11 RTNGIQSQVFELERKFQ-----HIRYLSPTEREMLGKEIN--LSPTQ---VKIWFQ 56 (157)
Q Consensus 11 Rt~~t~~q~~~Le~~F~-----~~~~p~~~~r~~La~~l~--l~~~~---VqvWFq 56 (157)
...++..+...|+..|. .+.+.+..+...+...+| +++.. |..+|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 5 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34578889999999884 345888888888888887 45556 666663
No 260
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=21.71 E-value=13 Score=26.66 Aligned_cols=42 Identities=10% Similarity=-0.006 Sum_probs=32.2
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
+......|....|-. .....||+..|++...+-.+|.|+-.=
T Consensus 19 l~AA~~l~~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~L 60 (231)
T 2qib_A 19 IGVALDLFSRRSPDE-VSIDEIASAAGISRPLVYHYFPGKLSL 60 (231)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCchh-cCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 444555588877644 557889999999999999999987543
No 261
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=21.44 E-value=1.5e+02 Score=18.78 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=28.2
Q ss_pred CCCCCHHH-HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHH
Q psy8301 11 RTNGIQSQ-VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 11 Rt~~t~~q-~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFq 56 (157)
+..++.+. +.++.....-. ....++|...+++..+|..|-.
T Consensus 30 ~rrWs~~~Kl~VV~~~~~g~-----~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIHGL-----ITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTTS-----SCHHHHHHHTTCCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHcCC-----CCHHHHHHHhCCCHHHHHHHHH
Confidence 34577776 44554444322 3467889999999999999975
No 262
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=21.29 E-value=47 Score=22.19 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=32.8
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
+......|....|-. .....||+..|++...+-..|.|+-.
T Consensus 15 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 55 (195)
T 3ppb_A 15 LETALQLFVSQGFHG-TSTATIAREAGVATGTLFHHFPSKEQ 55 (195)
T ss_dssp HHHHHHHHHHTCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 555566688887765 45788899999999999999998754
No 263
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=21.13 E-value=66 Score=20.53 Aligned_cols=19 Identities=5% Similarity=-0.022 Sum_probs=16.9
Q ss_pred HHHHHHHhCCChhHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWF 55 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWF 55 (157)
..++|+.+|++.+.++-|=
T Consensus 5 i~e~A~~~gvs~~tLR~ye 23 (109)
T 1r8d_A 5 VKQVAEISGVSIRTLHHYD 23 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 5678999999999999995
No 264
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=21.10 E-value=67 Score=19.26 Aligned_cols=23 Identities=9% Similarity=0.026 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNR 58 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNr 58 (157)
...+||..+|++...|..|-.++
T Consensus 29 tq~elA~~~gis~~~is~~E~G~ 51 (86)
T 3eus_A 29 TQADLAERLDKPQSFVAKVETRE 51 (86)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTS
T ss_pred CHHHHHHHhCcCHHHHHHHHCCC
Confidence 35689999999999999998654
No 265
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=20.89 E-value=91 Score=21.84 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHhhhcCCCC----HHHHHHHHHHhCCChhHHHHHHHH
Q psy8301 12 TNGIQSQVFELERKFQHIRYLS----PTEREMLGKEINLSPTQVKIWFQN 57 (157)
Q Consensus 12 t~~t~~q~~~Le~~F~~~~~p~----~~~r~~La~~l~l~~~~VqvWFqN 57 (157)
..|+.++.......-...-.|. .....++|+.+|++...+..|-..
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 4478887665432211110111 235788999999999999999874
No 266
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=20.89 E-value=54 Score=19.15 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFqNrR 59 (157)
..+||+.+|++...|..++.++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999997764
No 267
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=20.82 E-value=45 Score=23.00 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=31.8
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
+......|....|-. .....||+..|++...+-.+|.|+-.
T Consensus 36 l~aA~~l~~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sK~~ 76 (222)
T 3bru_A 36 IRAGLEHLTEKGYSS-VGVDEILKAARVPKGSFYHYFRNKAD 76 (222)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCCc-CcHHHHHHHhCCCcchhhhhCCCHHH
Confidence 444455588877655 45788899999999999999998744
No 268
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=20.75 E-value=47 Score=22.30 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=31.7
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR 59 (157)
+.+....|....|-. .....+|+..|++...+-..|.|+-
T Consensus 8 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 47 (194)
T 3bqz_B 8 LGVAKELFIKNGYNA-TTTGEIVKLSESSKGNLYYHFKTKE 47 (194)
T ss_dssp HHHHHHHHHHHTTTT-CCHHHHHHHTTCCHHHHHHHTSSHH
T ss_pred HHHHHHHHHHcCCcc-CCHHHHHHHhCCCchhHHHhCCCHH
Confidence 455566677777665 4578889999999999999999874
No 269
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=20.73 E-value=1.8e+02 Score=23.72 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q psy8301 14 GIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63 (157)
Q Consensus 14 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~r 63 (157)
++..+..+|.-.|..... ....-+++|..+|++...|+.+...-+.|.|
T Consensus 376 L~ereR~VI~LRygL~~~-e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 376 LSEREAMVLKLRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred CCHHHHHHHHHHHhccCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 455566666665542111 2346788999999999999999876666666
No 270
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=20.46 E-value=69 Score=20.43 Aligned_cols=20 Identities=0% Similarity=-0.079 Sum_probs=17.3
Q ss_pred HHHHHHHhCCChhHHHHHHH
Q psy8301 37 REMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 37 r~~La~~l~l~~~~VqvWFq 56 (157)
..++|+.+|++.+.++-|=+
T Consensus 4 i~e~A~~~gvs~~tLR~ye~ 23 (108)
T 2vz4_A 4 VGQVAGFAGVTVRTLHHYDD 23 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 56789999999999999953
No 271
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=20.36 E-value=1.6e+02 Score=20.07 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 14 GIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 14 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
+|..+.++|+-..+. + ...++|..++++++.|++...+=|.|
T Consensus 143 Lt~rE~~vl~~l~~g--~----s~~~Ia~~l~is~~TV~~~~~~i~~K 184 (208)
T 1yio_A 143 LTGREQQVLQLTIRG--L----MNKQIAGELGIAEVTVKVHRHNIMQK 184 (208)
T ss_dssp SCHHHHHHHHHHTTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHcC--C----cHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 666677777655332 2 35678999999999999877665554
No 272
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=20.20 E-value=46 Score=22.50 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=33.0
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 61 (157)
+....+.|....|-. .....+|+..|++...|-.+|.++-.=
T Consensus 13 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L 54 (192)
T 2zcm_A 13 IDNAITLFSEKGYDG-TTLDDISKSVNIKKASLYYHYDNKEEI 54 (192)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTCCHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCChHHHHHHCCCHHHH
Confidence 445556688888765 457888999999999999999987543
No 273
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=20.14 E-value=1.5e+02 Score=18.61 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCChhHHHHHHH
Q psy8301 13 NGIQSQVFELERKFQH-----IRYLSPTEREMLGKEINLSPTQVKIWFQ 56 (157)
Q Consensus 13 ~~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~~VqvWFq 56 (157)
.++..+...|...|.. +.+.+..+...+....+++...|..+|.
T Consensus 7 ~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~ 55 (111)
T 2kgr_A 7 AVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWN 55 (111)
T ss_dssp SSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5788888899998853 4467777777766667788888877764
No 274
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=20.09 E-value=73 Score=19.33 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q psy8301 36 EREMLGKEINLSPTQVKIWFQNRR 59 (157)
Q Consensus 36 ~r~~La~~l~l~~~~VqvWFqNrR 59 (157)
...+||..+|++...|..|..+++
T Consensus 19 tq~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 19 SRQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp CHHHHHHHHCCCHHHHHHHTTTSS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 357899999999999999987654
No 275
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=20.05 E-value=26 Score=24.87 Aligned_cols=41 Identities=7% Similarity=0.050 Sum_probs=26.7
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhHHHHHHHHHHH
Q psy8301 19 VFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60 (157)
Q Consensus 19 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 60 (157)
+..-...|....|-. .....+|+..|++...|-..|.|+-.
T Consensus 41 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~~tlY~~F~sKe~ 81 (237)
T 3kkd_A 41 LDAAMRLIVRDGVRA-VRHRAVAAEAQVPLSATTYYFKDIDD 81 (237)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCTTTC-----CHHH
T ss_pred HHHHHHHHHhcChhh-cCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 344445588887754 45788899999999999999998743
Done!