RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8301
(157 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 74.8 bits (185), Expect = 7e-19
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64
+ RT Q+ ELE++F+ RY S ERE L K++ L+ QVK+WFQNRR K KR
Sbjct: 2 RKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 70.0 bits (172), Expect = 6e-17
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63
+ RT+ Q+ ELE++FQ Y S ERE L K++ LS QVK+WFQNRR K K
Sbjct: 3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 68.0 bits (167), Expect = 3e-16
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66
+ RT Q+ ELE++F+ Y S ERE L KE+ L+ QVKIWFQNRR K KR +
Sbjct: 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 51.7 bits (124), Expect = 5e-09
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 6 RAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65
++ + RT Q V LER+F+ Y S R L +N+ P V+IWFQN+R K+K+
Sbjct: 52 KSKRRRTTDEQLMV--LEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKK 109
Query: 66 Q--AMNQNSNGKNVFKIKHIFTRKTKPTSAQAT 96
+ + Q + K I + T S T
Sbjct: 110 RSGKVEQRPGEEEADLAK-IGSLSTGQISIIET 141
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 31.7 bits (73), Expect = 0.013
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 26 FQHIR--YLSPTEREMLGKEINLSPTQVKIWFQNRR 59
+H+ Y S E+ L ++ LS Q+ WF N R
Sbjct: 3 LEHLHNPYPSEEEKSELARQTGLSRKQIDNWFINAR 38
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 28.3 bits (64), Expect = 1.5
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 38 EMLGKEINLSPTQVKIW 54
M +++++SP + KI
Sbjct: 157 TMFNRKVDISPPKSKIL 173
>gnl|CDD|221353 pfam11977, RNase_Zc3h12a, Zc3h12a-like Ribonuclease NYN domain.
This domain is found in the Zc3h12a protein which has
shown to be a ribonuclease that controls the stability
of a set of inflammatory genes. It has been suggested
that this domain belongs to the PIN domain superfamily.
This domain has also been identified as part of the NYN
domain family.
Length = 155
Score = 27.3 bits (61), Expect = 2.5
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 115 AEEHNIFVPNFDQSDFLDNKWEDIDILDELHDQ 147
E +FVPN+ + D K D L+ L
Sbjct: 39 HEVITVFVPNW-RYKARDGKVTDQHELERLIRL 70
>gnl|CDD|223244 COG0166, Pgi, Glucose-6-phosphate isomerase [Carbohydrate transport
and metabolism].
Length = 446
Score = 27.7 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 56 QNRRYKQKRLQAMNQNSNGKNVFKIKHIFTRKTKPTS 92
Y LQ +N SNGK+V I T P S
Sbjct: 270 PYLEYFPAWLQQLNMESNGKSVKGIGPEVNFHTDPIS 306
>gnl|CDD|240383 PTZ00366, PTZ00366, Surface antigen (SAG) superfamily;
Provisional.
Length = 392
Score = 27.3 bits (61), Expect = 3.7
Identities = 13/43 (30%), Positives = 14/43 (32%), Gaps = 14/43 (32%)
Query: 85 TRKTKPTSAQATIGCPEAKKIGRKPETDFPAEEHNIF---VPN 124
T+ SA TI PET FP E VP
Sbjct: 298 TKDDDKNSATLTI-----------PETGFPESEQQFRLGCVPK 329
>gnl|CDD|226475 COG3966, DltD, Protein involved in D-alanine esterification of
lipoteichoic acid and wall teichoic acid (D-alanine
transfer protein) [Cell envelope biogenesis, outer
membrane].
Length = 415
Score = 26.3 bits (58), Expect = 8.2
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 45 NLSPTQVKIWFQN-------RRYKQKRLQAMNQNSNGKNVFK 79
N S TQ+ + + R+Y KRL + K + K
Sbjct: 145 NFSQTQIYQFLKEDMSTDPERQYAAKRLLQFKSDVTLKELLK 186
>gnl|CDD|235876 PRK06849, PRK06849, hypothetical protein; Provisional.
Length = 389
Score = 26.2 bits (58), Expect = 8.4
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 120 IFVPNFDQSDFLDNKWEDIDILDEL 144
+ +F+ L NKWE + L
Sbjct: 103 VLHFDFELLLLLHNKWEFAEQARSL 127
>gnl|CDD|203587 pfam07137, VDE, Violaxanthin de-epoxidase (VDE). This family
represents a conserved region approximately 150 residues
long within plant violaxanthin de-epoxidase (VDE). In
higher plants, violaxanthin de-epoxidase forms part of a
conserved system that dissipates excess energy as heat
in the light-harvesting complexes of photosystem II
(PSII), thus protecting them from photo-inhibitory
damage.
Length = 198
Score = 26.0 bits (57), Expect = 8.6
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 112 DFPAEEHNIFVPNFDQSDFLDNKW 135
+FP + ++ V NF+ +DF KW
Sbjct: 21 EFPVPDPSVLVQNFNMADF-SGKW 43
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,972,383
Number of extensions: 701021
Number of successful extensions: 595
Number of sequences better than 10.0: 1
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 17
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)