RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8301
(157 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 68.7 bits (168), Expect = 7e-17
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66
K R + Q ELE++F YL+ R + + +NL+ QVKIWFQNRR K K++
Sbjct: 15 KKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 67.9 bits (166), Expect = 9e-17
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 11 RTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64
R + Q ELE++F RYL+ R + ++L+ Q+KIWFQNRR K K+
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 54
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 67.9 bits (166), Expect = 1e-16
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQAM 68
+ RT+ Q Q+ LE++F+ Y RE L +I+L ++++WF NRR K +R + +
Sbjct: 3 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 62
Query: 69 NQN 71
Sbjct: 63 RNQ 65
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 64.5 bits (157), Expect = 2e-15
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64
K R + Q+ ELER++ ++++ +R + +LS Q+ IWFQNRR K+K+
Sbjct: 3 KKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 63.4 bits (154), Expect = 4e-15
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66
K RT + LER F S E + +E+NL V++WF NRR ++KR++
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 58
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 62.9 bits (153), Expect = 7e-15
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 11 RTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64
+ Q ELE+KF+ +YLSP ER+ L K + LS QVK WFQNRR K +R
Sbjct: 4 QVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 62.2 bits (151), Expect = 1e-14
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYK 61
+ RT Q+ L+R+F RYL+ R+ L E+ L+ Q+KIWFQN R K
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 62.6 bits (152), Expect = 1e-14
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQAM 68
++RT + Q+ L + +E L + LSP +++WFQN+R K K+ M
Sbjct: 5 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIM 64
Query: 69 NQ 70
+
Sbjct: 65 MK 66
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 60.3 bits (146), Expect = 8e-14
Identities = 30/57 (52%), Positives = 37/57 (64%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65
K RT +Q+ LERKF+ +YLS ER ++L+ TQVKIWFQNRR K KRL
Sbjct: 2 KPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 59.5 bits (144), Expect = 2e-13
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64
+ RT + Q+ LE++F Y+S R L ++NL + +K+WFQNRR K KR
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 60.4 bits (146), Expect = 2e-13
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63
+RTN Q+ ELE++F +YLS R + + L+ TQVKIWFQNRR KQK
Sbjct: 24 LGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQK 83
Query: 64 RLQ 66
+ +
Sbjct: 84 KRE 86
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 59.2 bits (143), Expect = 3e-13
Identities = 34/58 (58%), Positives = 41/58 (70%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66
K R Q+QV+ELER+F+ +YLS ERE L I+L+PTQVKIWFQN RYK KR
Sbjct: 4 KRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 58.3 bits (141), Expect = 3e-13
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 11 RTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRR 59
R Q L F+ + S + + +++ L + V +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 58.8 bits (142), Expect = 4e-13
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64
+ RT SQ+ ELER F+ +Y RE L + NL+ ++++WFQNRR + ++
Sbjct: 4 RSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 59
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 58.2 bits (141), Expect = 4e-13
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 18 QVFELERKFQHI-RYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64
LE+ F I ++ E L K+++ ++ WF+ RR ++K
Sbjct: 4 PNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 57.6 bits (139), Expect = 1e-12
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQAM 68
+ RT SQ+ ELE+ F RYL+ L ++ L QVKIWF+NRR + K
Sbjct: 3 RTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 62
Query: 69 NQNS 72
+++
Sbjct: 63 HKDQ 66
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 57.8 bits (139), Expect = 1e-12
Identities = 34/58 (58%), Positives = 40/58 (68%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66
K R ++Q +ELER+F+ RYLS ERE L I L+PTQVKIWFQN RYK KR Q
Sbjct: 11 KRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 57.1 bits (138), Expect = 1e-12
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 16 QSQVFELERKF---QHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65
+ V LE F YL E L K +LS Q+K W NRR K+K +
Sbjct: 7 KENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 56.9 bits (137), Expect = 2e-12
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66
+ RT+ Q+ +LE FQ RY + RE + NL+ +V++WF+NRR K ++ +
Sbjct: 3 RQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 60
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 56.4 bits (136), Expect = 2e-12
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 11 RTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63
+++ LE+ F+ + L+ E+E + K+ ++P QV++WF N+R + K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 55.4 bits (133), Expect = 8e-12
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 9 KMRTNGIQSQVFELERKFQH-IRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQA 67
+ + QV LE F ++ PT ++ E L+ Q + WF+ R + +R +
Sbjct: 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62
Query: 68 MNQNS 72
+
Sbjct: 63 LPSEC 67
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 55.0 bits (132), Expect = 1e-11
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64
+ RT+ + LE F S + + ++ L V++WF NRR K KR
Sbjct: 10 RKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKR 65
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 54.6 bits (131), Expect = 1e-11
Identities = 14/55 (25%), Positives = 31/55 (56%)
Query: 11 RTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65
RT+ + LE+ F + + + ++ +++N+ +++WF NRR K+KR+
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 56
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 54.3 bits (130), Expect = 3e-11
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 15/71 (21%)
Query: 9 KMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEIN---------------LSPTQVKI 53
R + + +E F +Y +RE + N ++ +V
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61
Query: 54 WFQNRRYKQKR 64
WF NRR + KR
Sbjct: 62 WFANRRKEIKR 72
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 53.6 bits (129), Expect = 3e-11
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 22 LERKFQHI-RYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63
LE+ F + +Y + L K+++ S +++ WF++RR + K
Sbjct: 16 LEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 53.9 bits (129), Expect = 4e-11
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 3 QSHRAGKMRTNGIQSQVFE--LERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRY 60
+ + + + Q + ER I+ E E + +KIW N +
Sbjct: 15 GTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKN 74
Query: 61 KQKR 64
Sbjct: 75 SGPS 78
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 53.0 bits (127), Expect = 7e-11
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 9 KMRTNGIQSQVFELERKFQHI---RYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRL 65
+ R N + L F Y S +E L K+ ++ +QV WF N+R + K+
Sbjct: 3 RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62
Query: 66 QAMNQNSNG 74
Q
Sbjct: 63 IGKFQEEAN 71
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 52.4 bits (126), Expect = 1e-10
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 9 KMRTNGIQSQVFELERKF---QHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64
R + + Y + E++ + + NL+ QV WF N R + +
Sbjct: 4 NKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 52.0 bits (124), Expect = 2e-10
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 9 KMRTNGIQSQVFELERKFQHI-RYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKR 64
+ RT + L+ + Y L +++L + +FQN+RY K
Sbjct: 9 RSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 49.4 bits (117), Expect = 2e-09
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 21/77 (27%)
Query: 11 RTNGIQSQVFELERKFQHIRYLSPTEREMLGKEIN---------------------LSPT 49
R + L + ++ + S ERE L +E N ++
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 50 QVKIWFQNRRYKQKRLQ 66
+V WF NRR ++
Sbjct: 61 RVYNWFANRRKEEAFRH 77
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 48.2 bits (114), Expect = 6e-09
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 4 SHRAGKMRTNGIQSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQK 63
S +GK +T + Q+ L+ F ++ + + L + L ++ WF + RY K
Sbjct: 3 SGSSGKRKT---KEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALK 59
Query: 64 R--LQAMNQNSNG 74
L+ N++G
Sbjct: 60 HGQLKWFRDNASG 72
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 47.8 bits (113), Expect = 6e-09
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 16 QSQVFELERKFQHIRYLSPTEREMLGKEINLSPTQVKIWFQNRRYKQKRLQ 66
Q+ L+ F + L+ E L + L+ ++ WF ++ + +
Sbjct: 13 AEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 63
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 26.7 bits (58), Expect = 1.6
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 15 IQSQVFELERKFQHIRYLSPTER----------EMLGKEINLSPTQVKIWFQNRRYKQKR 64
I ++ + KF+ + L + +LG +I+ + + RY +K+
Sbjct: 25 INKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQ 84
Query: 65 L 65
+
Sbjct: 85 I 85
>d1pm1x_ b.60.1.1 (X:) Nitrophorin 2 (prolixin-s) {Rhodnius prolixus
[TaxId: 13249]}
Length = 180
Score = 25.6 bits (55), Expect = 2.4
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 122 VPNFDQSDFLDNKWEDIDILDELHDQYVPNCT 153
D++ + KW LD+ C+
Sbjct: 10 KQGLDKAKYFSGKWYVTHFLDKDPQVTDQYCS 41
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
{Human (Homo sapiens), AGX1 [TaxId: 9606]}
Length = 501
Score = 24.6 bits (53), Expect = 8.0
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 26 FQHIRYLSPTEREMLGKEI-NLSPTQVKIWFQNRRYKQKRLQAMNQNSNGKNVF 78
+ L ++ L E+ ++ ++ + QK ++ NQ+S+ KNV
Sbjct: 19 LRFWNELEEAQQVELYAELQAMNFEELN------FFFQKAIEGFNQSSHQKNVD 66
>d1kzqa2 b.6.2.1 (A:132-255) Major surface antigen p30, SAG1
{Toxoplasma gondii [TaxId: 5811]}
Length = 124
Score = 23.7 bits (51), Expect = 8.2
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 109 PETDFPAEEHNIFV 122
+ FPAE ++ +
Sbjct: 91 KKEAFPAESKSVII 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 599,731
Number of extensions: 26660
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 42
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.8 bits)