Query psy8304
Match_columns 593
No_of_seqs 221 out of 616
Neff 5.8
Searched_HMMs 29240
Date Sat Aug 17 00:18:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nk4_A ZONA pellucida 3; ferti 99.9 1.3E-26 4.6E-31 239.3 24.3 239 164-421 3-260 (297)
2 3qw9_A Transforming growth fac 99.6 3.6E-15 1.2E-19 143.3 15.2 113 298-415 4-127 (176)
3 2l2t_A Receptor tyrosine-prote 86.3 0.68 2.3E-05 34.3 3.7 27 538-564 16-42 (44)
4 2ks1_B Epidermal growth factor 78.0 0.7 2.4E-05 34.3 1.1 18 546-563 25-42 (44)
5 2jwa_A Receptor tyrosine-prote 77.3 2 6.8E-05 31.8 3.3 18 546-563 25-42 (44)
6 2k9y_A Ephrin type-A receptor 72.1 2.9 9.8E-05 29.9 3.1 25 535-559 16-40 (41)
7 2v8f_C MDIA1, profilin IIA; al 65.1 4.4 0.00015 26.2 2.4 8 110-117 12-19 (26)
8 3j1r_A Archaeal adhesion filam 50.4 16 0.00053 23.9 3.1 20 537-556 6-25 (26)
9 4gyx_A Type III collagen fragm 47.4 24 0.00083 23.3 3.7 13 70-82 3-15 (31)
10 1zza_A Stannin, AG8_1; helix, 46.4 24 0.00083 28.8 4.4 35 531-565 12-47 (90)
11 2pbd_V VAsp, vasodilator-stimu 42.8 9.3 0.00032 28.0 1.4 10 110-119 1-10 (43)
12 2k1k_A Ephrin type-A receptor 39.4 31 0.0011 24.5 3.7 8 532-539 11-18 (38)
13 1iij_A ERBB-2 receptor protein 38.1 11 0.00037 26.5 1.1 27 531-559 8-34 (35)
14 3j0c_B E2 envelope glycoprotei 30.6 23 0.00079 37.5 2.5 27 535-561 369-395 (423)
15 2yew_C E2 envelope glycoprotei 30.1 24 0.00082 37.4 2.5 30 534-563 366-395 (421)
16 3j0f_I E2 envelope glycoprotei 27.2 30 0.001 36.7 2.7 29 535-563 369-397 (423)
17 2llm_A Amyloid beta A4 protein 28.2 18 0.00062 26.5 0.0 29 530-559 15-43 (43)
18 2l34_A TYRO protein tyrosine k 22.2 75 0.0026 21.9 3.1 8 527-534 1-8 (33)
19 1pi7_A VPU protein, U ORF prot 21.9 52 0.0018 23.2 2.2 25 536-560 7-31 (36)
20 2l6w_A Beta-type platelet-deri 26.0 21 0.00072 25.6 0.0 8 552-559 26-33 (39)
No 1
>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_A*
Probab=99.95 E-value=1.3e-26 Score=239.28 Aligned_cols=239 Identities=13% Similarity=0.296 Sum_probs=161.2
Q ss_pred ceeEEecCCeEEEEEEeCCCccc--eeeecCCCCCCCceeccCCCCceEEEEEEeeccCCCCCccCCCccccccCCCCce
Q psy8304 164 SLDVKCEKNSMKVFISFDKPFFG--IVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHACGTSGNTENGLYGYGADAGSGT 241 (593)
Q Consensus 164 ~v~V~C~~d~M~V~V~~~~pF~G--~Iyskg~~~dp~C~~v~~g~g~t~~~F~I~l~~CGt~~~~~~~~~~y~~~n~~g~ 241 (593)
.+.|+|..+.|+|.|..+..-.| .-....++.++.|+.+..+.+.+++.|.+++++|||+++.+ ++.+
T Consensus 3 ~V~V~C~~~~m~V~V~k~~l~~~~~i~~~~L~L~d~~C~~~~~~~~~~~~~f~~~l~~CGT~~~~~----------~~~i 72 (297)
T 3nk4_A 3 PVAVQCQEAQLVVTVHRDLFGTGRLINAADLTLGPAACKHSSLNAAHNTVTFAAGLHECGSVVQVT----------PDTL 72 (297)
T ss_dssp SEEEEECSSEEEEEEESCCSCSSCCCCGGGEEETTTTBCCSEEETTTTEEEEEEETTCTTCEEEEC----------SSEE
T ss_pred cEEEEeCCCEEEEEEEHHHhCCCCccccceeEECCCCCCCeeeCCCCcEEEEEecCCCCCceeEec----------CCEE
Confidence 57899999999999998532222 22234456688999975332357999999999999998643 3578
Q ss_pred EEEEEEEEeeCC----cceeeecceEEEEeeecCCccceeeeccccccccceeeeecc-CCCceEEEEEEeCCCCCcccc
Q psy8304 242 YFENIIVIQYDP----QVQEVWDQARKLRCTWHDQYEKSVTFRPFPVDMLDVVRADFA-GDNVGCWMQIQVGKGPWASEV 316 (593)
Q Consensus 242 ~ysNtVVVQ~hp----~I~T~~D~~~~V~C~y~~~~eksVt~~p~~V~m~~v~~~~fs-g~~p~~~M~I~~g~GP~~~~V 316 (593)
.|+|+|+....+ .|++.....++|+|.|.+... |+...+....... ..+.. .+.....|+|++++ |..+.
T Consensus 73 iY~N~l~~~~~~~~~~~ItR~~~~~l~~~C~Y~~~~~--vs~~~~~p~~~~~-~~~~~~~g~~~~~m~l~~d~--~~~~~ 147 (297)
T 3nk4_A 73 IYRTLINYDPSPASNPVIIRTNPAVIPIECHYPRREQ--VSSNAIRPTWSPF-NSALSAEERLVFSLRLMSDD--WSTER 147 (297)
T ss_dssp EEEEEEEECCCCCSSTTEESSCCEEEEEEEEEEC------------CCBCTT-C------CCCCEEEEEECTT--SSSBC
T ss_pred EEEEEEEEeccCCCCCceEecccEEEEEEEEEcCCCc--cccccCcCccccc-ccccccccceEEEEEeccCC--Ccccc
Confidence 899999876432 245555667899999998643 3321111000000 01111 13457899999864 32221
Q ss_pred -cceeecCCEEEEEEEEecC-CCcceEEEeEEEEecCCC----CcEEeeccCCccccccccc---ceeeeccCCCcccee
Q psy8304 317 -SGLVKIGQTMTMVLAIKDD-DSKFDMLVRNCMAHDGKR----APIQLVDQRGCVTRSKLMS---RFTKIKNFGASASVL 387 (593)
Q Consensus 317 -s~~V~IGd~L~l~v~i~~~-~~~~~l~V~sC~Atdg~g----~~~~LIDenGCp~D~~L~~---~f~~~~d~g~s~sll 387 (593)
...+.+||+||+++++... +..+.++|++|||+++.+ ..|.||+.+||++|.++.. .|.... +. +..
T Consensus 148 ~~~~~~l~~~lyvev~v~~~~~~~l~l~l~~C~ATps~~~~~~~~y~lI~~~GC~~d~~~~~~~s~~~~~~--~~--~~~ 223 (297)
T 3nk4_A 148 PFTGFQLGDILNIQAEVSTENHVPLRLFVDSCVAALSPDGDSSPHYAIIDFNGCLVDGRVDDTSSAFITPR--PR--EDV 223 (297)
T ss_dssp CSCCBCTTCEEEEEEEECCTTBCCEEEEEEEEEEESSSCTTSSSEEEEEBTTTEEGGGGSTTCCCEECSSC--SS--TTE
T ss_pred cCCcccCCCEEEEEEEEecCCCCCEEEEEeeEEEeCCCCccCCceEEEEccCCCCcCCccccceeEEecCC--CC--Cce
Confidence 2357899999999999764 478999999999999753 4789996699999988752 232111 21 224
Q ss_pred EEEEEEeeEeCC--CCeEEEEEEEEEccCCC-CCcCC
Q psy8304 388 SYAHFQAFKFPD--SMEVHFQCTIQICRYQC-PDQCS 421 (593)
Q Consensus 388 a~a~f~AFKFpd--s~~Vyf~C~V~vC~~~C-P~~C~ 421 (593)
++|.|+||||.+ ...|||||.|++|.... ...|.
T Consensus 224 ~rF~~~~F~F~~~~~~~vylhC~v~vC~~~~~~~~C~ 260 (297)
T 3nk4_A 224 LRFRIDVFRFAGDNRNLIYITCHLKVTPADQGPDPQN 260 (297)
T ss_dssp EEEEEECCEETTCSSCEEEEEEEEEEEETTCCCBTTB
T ss_pred EEEEEEeEeccCCCCCeEEEEEEEEEECCCCCCCccc
Confidence 689999999997 68999999999998742 23453
No 2
>3qw9_A Transforming growth factor beta receptor type 3; cytokine receptor, immunoglobulin domain, ZONA pellucida, TG ligand CO-receptor; HET: NAG BMA FUC MAN; 2.00A {Rattus norvegicus}
Probab=99.63 E-value=3.6e-15 Score=143.32 Aligned_cols=113 Identities=10% Similarity=0.173 Sum_probs=85.2
Q ss_pred CceEEEEEEeCCCCCcccc--cceeecCCEEEEEEEEecCCCcceEEEeEEEEecCCC----CcEEeeccCCcccccccc
Q psy8304 298 NVGCWMQIQVGKGPWASEV--SGLVKIGQTMTMVLAIKDDDSKFDMLVRNCMAHDGKR----APIQLVDQRGCVTRSKLM 371 (593)
Q Consensus 298 ~p~~~M~I~~g~GP~~~~V--s~~V~IGd~L~l~v~i~~~~~~~~l~V~sC~Atdg~g----~~~~LIDenGCp~D~~L~ 371 (593)
++...|+||.+.. |..++ ...+.+||+||+++++...+..+.+++++|||+++.+ ..|.||+ |||+.|.++.
T Consensus 4 ~f~~~M~ly~d~~-f~~p~~~~~~v~l~~~lyvev~l~~~d~~l~l~ld~CwATps~d~~~~~~y~lI~-nGC~~D~t~~ 81 (176)
T 3qw9_A 4 NATFNMELYNTDL-FLVPSPGVFSVAENEHVYVEVSVTKADQDLGFAIQTCFLSPYSNPDRMSDYTIIE-NICPKDDSVK 81 (176)
T ss_dssp CEEEEEEEESSTT-CCSBCCSSEEECTTCEEEEEEEEEESCTTEEEEEEEEEEESCSCTTSCCSCEEEE-TTEECSTTCE
T ss_pred eEEEEEEeecCcc-cCcCccCCceEecCCEEEEEEEeccCCCceEEEEeeEEeecCCCccCCccEEEEE-CCccCCCCEE
Confidence 3567899998752 33332 2368999999999999887889999999999999853 4799996 9999998763
Q ss_pred c-ceee---eccCCCccceeEEEEEEeeEeC-CCCeEEEEEEEEEccCC
Q psy8304 372 S-RFTK---IKNFGASASVLSYAHFQAFKFP-DSMEVHFQCTIQICRYQ 415 (593)
Q Consensus 372 ~-~f~~---~~d~g~s~slla~a~f~AFKFp-ds~~Vyf~C~V~vC~~~ 415 (593)
- .... ...+| .+-.++|.| +|||. +.+.|||||.|.+|...
T Consensus 82 ~~~~~~v~~~~~ng--~s~~~RFsf-~F~Fv~~~~~VYLHC~v~vC~~~ 127 (176)
T 3qw9_A 82 FYSSKRVHFPIPHA--EVDKKRFSF-LFKSVFNTSLLFLHCELTLCSRK 127 (176)
T ss_dssp EEEEEEEEETTTTE--EEEEEEEEE-ECCCCSSCSEEEEEEEEEEEESS
T ss_pred EEeccccccccCCC--CcceEEEEE-EEEecCCCCeEEEEEeeEEECCC
Confidence 1 1111 00112 223568999 99998 47899999999999875
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=86.26 E-value=0.68 Score=34.31 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhheeecccccC
Q psy8304 538 FVLLGILVVSCLVSACLCIRLRPFSNK 564 (593)
Q Consensus 538 v~ll~~llvs~~va~~L~~r~r~~~~~ 564 (593)
|+-.+++++.++.+.|+|+|+|+...+
T Consensus 16 VVgGv~~v~ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 16 VIGGLFILVIVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred ehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 333333334455666777777776543
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=77.96 E-value=0.7 Score=34.26 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=10.6
Q ss_pred HHHHHHHhhheeeccccc
Q psy8304 546 VSCLVSACLCIRLRPFSN 563 (593)
Q Consensus 546 vs~~va~~L~~r~r~~~~ 563 (593)
+.++++.|+|+|+|+...
T Consensus 25 ~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 25 LVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp HHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHHhhhhHhhc
Confidence 344456666677766643
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=77.28 E-value=2 Score=31.83 Aligned_cols=18 Identities=22% Similarity=-0.005 Sum_probs=10.4
Q ss_pred HHHHHHHhhheeeccccc
Q psy8304 546 VSCLVSACLCIRLRPFSN 563 (593)
Q Consensus 546 vs~~va~~L~~r~r~~~~ 563 (593)
+.+.++.++|+|+|+...
T Consensus 25 vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 25 VVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHhheehhhhhc
Confidence 334555566667666654
No 6
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=72.13 E-value=2.9 Score=29.90 Aligned_cols=25 Identities=12% Similarity=-0.047 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeec
Q psy8304 535 ATLFVLLGILVVSCLVSACLCIRLR 559 (593)
Q Consensus 535 ~~~v~ll~~llvs~~va~~L~~r~r 559 (593)
++.++..+++++++++.+|++.|+|
T Consensus 16 ~~~vv~Gv~ll~~iv~~~~~~~rRr 40 (41)
T 2k9y_A 16 IGGVAVGVVLLLVLAGVGFFIHRRR 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred EeehhHHHHHHHHHHHHheeEeeec
Confidence 3334444444433555555555543
No 7
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=65.05 E-value=4.4 Score=26.24 Aligned_cols=8 Identities=63% Similarity=1.393 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q psy8304 110 GPPPPPPP 117 (593)
Q Consensus 110 ~p~~~~~~ 117 (593)
|.|||||+
T Consensus 12 giPpPppl 19 (26)
T 2v8f_C 12 SIPPPPPL 19 (26)
T ss_pred CCCCCCCC
Confidence 33333333
No 8
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=50.42 E-value=16 Score=23.90 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhhhe
Q psy8304 537 LFVLLGILVVSCLVSACLCI 556 (593)
Q Consensus 537 ~v~ll~~llvs~~va~~L~~ 556 (593)
.++||.++.+++.|..|||+
T Consensus 6 A~~lLIviav~aaVllylW~ 25 (26)
T 3j1r_A 6 ATLLLILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455555566666666653
No 9
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=47.44 E-value=24 Score=23.30 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCC
Q psy8304 70 VDRPPPPPAPIVA 82 (593)
Q Consensus 70 ~~~~~~~~~p~~~ 82 (593)
++||+||+.|-+-
T Consensus 3 pgppgprgqpgvm 15 (31)
T 4gyx_A 3 PGPPGPRGQPGVM 15 (31)
T ss_dssp CCCCCCCCCCCCC
T ss_pred CCCCCCCCCCccc
Confidence 3455566666543
No 10
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=46.41 E-value=24 Score=28.76 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHhhheeecccccCC
Q psy8304 531 IGFSATLFVLLGILVVSCL-VSACLCIRLRPFSNKT 565 (593)
Q Consensus 531 ~~f~~~~v~ll~~llvs~~-va~~L~~r~r~~~~~~ 565 (593)
.+.+..+|||+.+.++.++ ..+|.|.|+|++..+.
T Consensus 12 tgvvtv~viliavaalg~li~gcwcylrlqri~qse 47 (90)
T 1zza_A 12 TGVVTVIVILIAIAALGALILGCWCYLRLQRISQSE 47 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSSCSSCSSC
T ss_pred cceEEehhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444445555555444444 4567778999987653
No 11
>2pbd_V VAsp, vasodilator-stimulated phosphoprotein; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens}
Probab=42.78 E-value=9.3 Score=28.01 Aligned_cols=10 Identities=60% Similarity=1.378 Sum_probs=5.6
Q ss_pred CCCCCCCCCC
Q psy8304 110 GPPPPPPPLS 119 (593)
Q Consensus 110 ~p~~~~~~~~ 119 (593)
|||||||+|.
T Consensus 1 ~PPP~PPlP~ 10 (43)
T 2pbd_V 1 GPPPAPPLPA 10 (43)
T ss_dssp CCCCCCCCCC
T ss_pred CcCCcCCCCC
Confidence 4666665554
No 12
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=39.45 E-value=31 Score=24.48 Aligned_cols=8 Identities=13% Similarity=0.189 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy8304 532 GFSATLFV 539 (593)
Q Consensus 532 ~f~~~~v~ 539 (593)
+..+++|+
T Consensus 11 GaIAGiVv 18 (38)
T 2k1k_A 11 GEIVAVIF 18 (38)
T ss_dssp HHHHHHHH
T ss_pred Cceeeeeh
Confidence 33344433
No 13
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=38.09 E-value=11 Score=26.54 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhheeec
Q psy8304 531 IGFSATLFVLLGILVVSCLVSACLCIRLR 559 (593)
Q Consensus 531 ~~f~~~~v~ll~~llvs~~va~~L~~r~r 559 (593)
++.+++++-+ +++++ +.....+|+|+|
T Consensus 8 ~sIaagVvgl-ll~vi-i~l~~~~~iRRr 34 (35)
T 1iij_A 8 TFIIATVVGV-LLFLI-LVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHH-HHHHH-HTTTTTHHHHHC
T ss_pred cEeHHHHHHH-HHHHH-HHHHhheEEeec
Confidence 3445555553 22222 334444555555
No 14
>3j0c_B E2 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=30.57 E-value=23 Score=37.49 Aligned_cols=27 Identities=30% Similarity=0.177 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeeccc
Q psy8304 535 ATLFVLLGILVVSCLVSACLCIRLRPF 561 (593)
Q Consensus 535 ~~~v~ll~~llvs~~va~~L~~r~r~~ 561 (593)
++++++.+++++++.+++|||.+.|+.
T Consensus 369 ~~l~~~a~~i~i~~~~s~~l~~~aR~~ 395 (423)
T 3j0c_B 369 LGLSICAAIATVSVAASTWLFCRSRVA 395 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666677778999999999888864
No 15
>2yew_C E2 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=30.11 E-value=24 Score=37.38 Aligned_cols=30 Identities=27% Similarity=0.177 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeeccccc
Q psy8304 534 SATLFVLLGILVVSCLVSACLCIRLRPFSN 563 (593)
Q Consensus 534 ~~~~v~ll~~llvs~~va~~L~~r~r~~~~ 563 (593)
+++++.++++++++++.++|||.|.|+.-+
T Consensus 366 i~~l~~~a~~~~i~~~~s~~~~c~aR~~CL 395 (421)
T 2yew_C 366 ITVLASLGLLIVISSGFSCFLCSVARTKCL 395 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 456677778888899999999999887543
No 16
>3j0f_I E2 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1z8y_J
Probab=27.24 E-value=30 Score=36.70 Aligned_cols=29 Identities=7% Similarity=-0.027 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeeccccc
Q psy8304 535 ATLFVLLGILVVSCLVSACLCIRLRPFSN 563 (593)
Q Consensus 535 ~~~v~ll~~llvs~~va~~L~~r~r~~~~ 563 (593)
++++++.+++++++.+++|||.+.|+.=+
T Consensus 369 ~~l~~~a~~~~i~~~~s~~~~~~aR~~CL 397 (423)
T 3j0f_I 369 LAVASATVAMMIGVTVAVLCACKARRECL 397 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 55555667778899999999998886543
No 17
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=28.16 E-value=18 Score=26.50 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhheeec
Q psy8304 530 TIGFSATLFVLLGILVVSCLVSACLCIRLR 559 (593)
Q Consensus 530 ~~~f~~~~v~ll~~llvs~~va~~L~~r~r 559 (593)
..+..++|.+..+.+. +++|..+++.|+|
T Consensus 15 srga~iGL~v~gVai~-~vIVvsl~mlRrr 43 (43)
T 2llm_A 15 NKGAIIGLMVGGVVIA-TVIVITLVMLKKK 43 (43)
Confidence 3555666666544443 4555555555554
No 18
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=22.19 E-value=75 Score=21.88 Aligned_cols=8 Identities=25% Similarity=0.127 Sum_probs=3.3
Q ss_pred eechhHHH
Q psy8304 527 CMTTIGFS 534 (593)
Q Consensus 527 C~S~~~f~ 534 (593)
|+....-+
T Consensus 1 C~~L~~ga 8 (33)
T 2l34_A 1 CSTVSPGV 8 (33)
T ss_dssp CCCCCTHH
T ss_pred CcccCcce
Confidence 44444443
No 19
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=21.86 E-value=52 Score=23.23 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhhheeecc
Q psy8304 536 TLFVLLGILVVSCLVSACLCIRLRP 560 (593)
Q Consensus 536 ~~v~ll~~llvs~~va~~L~~r~r~ 560 (593)
+++.+...+++++++..+.++..|+
T Consensus 7 ~ivalivalIiaIVVWtiv~ieYrk 31 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIVIIEGRG 31 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566677777766654443
No 20
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=26.02 E-value=21 Score=25.63 Aligned_cols=8 Identities=13% Similarity=0.090 Sum_probs=3.0
Q ss_pred Hhhheeec
Q psy8304 552 ACLCIRLR 559 (593)
Q Consensus 552 ~~L~~r~r 559 (593)
++|.+.++
T Consensus 26 IiLi~~w~ 33 (39)
T 2l6w_A 26 IILIMLWQ 33 (39)
Confidence 33333333
Done!