Query psy8304
Match_columns 593
No_of_seqs 221 out of 616
Neff 5.8
Searched_HMMs 13730
Date Sat Aug 17 00:18:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8304.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8304hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rutx3 g.39.1.3 (X:83-113) LI 18.2 8.4 0.00062 24.8 -0.8 19 250-268 13-31 (31)
2 d1uk5a_ a.7.7.1 (A:) BAG-famil 13.5 36 0.0026 27.8 1.8 27 107-133 5-31 (111)
3 d1iq6a_ d.38.1.4 (A:) (R)-spec 12.9 1.2E+02 0.0086 23.9 5.1 35 319-353 85-119 (132)
4 d2iuba2 f.17.3.1 (A:286-349) M 9.4 66 0.0048 22.9 1.9 8 550-557 55-62 (64)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 7.5 1.3E+02 0.0097 19.3 2.5 26 526-554 10-35 (37)
6 d1z6ba1 d.38.1.6 (A:84-229) (3 7.3 1.6E+02 0.012 23.9 3.8 33 318-350 98-130 (146)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 7.2 58 0.0042 25.1 0.7 9 553-561 38-46 (91)
8 d1jvra_ a.61.1.2 (A:) HTLV-II 6.9 2.3E+02 0.017 23.2 4.5 8 19-26 53-60 (137)
9 d2bi0a1 d.38.1.4 (A:8-185) Hyp 6.9 2.7E+02 0.02 23.2 5.3 35 318-352 94-136 (178)
10 d1oqek_ g.24.1.2 (K:) Tumor ne 6.7 29 0.0021 21.6 -1.1 13 338-350 9-21 (31)
No 1
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.17 E-value=8.4 Score=24.77 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=15.2
Q ss_pred eeCCcceeeecceEEEEee
Q psy8304 250 QYDPQVQEVWDQARKLRCT 268 (593)
Q Consensus 250 Q~hp~I~T~~D~~~~V~C~ 268 (593)
..+..|++..|..|++.|+
T Consensus 13 ~~~e~VmRA~~~VyHl~CF 31 (31)
T d1rutx3 13 PASELVMRAQGNVYHLKCF 31 (31)
T ss_dssp CTTSEEEEETTEEECGGGC
T ss_pred ChhHhheecccceeeeccC
Confidence 4456678889999999996
No 2
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.48 E-value=36 Score=27.76 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccc
Q psy8304 107 VYHGPPPPPPPLSAAKPPPVQPEAMDK 133 (593)
Q Consensus 107 ~~~~p~~~~~~~~~~~~~~~~~~~~~~ 133 (593)
...+|+.++||+++...-|++++++.+
T Consensus 5 s~~~p~~~~~p~~~~~~~p~~~P~~~k 31 (111)
T d1uk5a_ 5 SSGAPAEPAAPKSGEAETPPKHPGVLK 31 (111)
T ss_dssp CCCCCCCCCCCCCCSSSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCcCcCCCCCCccHHH
Confidence 445566666666655555566665544
No 3
>d1iq6a_ d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Aeromonas caviae [TaxId: 648]}
Probab=12.86 E-value=1.2e+02 Score=23.95 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=24.5
Q ss_pred eeecCCEEEEEEEEecCCCcceEEEeEEEEecCCC
Q psy8304 319 LVKIGQTMTMVLAIKDDDSKFDMLVRNCMAHDGKR 353 (593)
Q Consensus 319 ~V~IGd~L~l~v~i~~~~~~~~l~V~sC~Atdg~g 353 (593)
.|..||.|++..+|.+....-++..-++++++..|
T Consensus 85 Pv~~GDtl~~~~~v~~~~~~~~~v~~~~~~~nq~g 119 (132)
T d1iq6a_ 85 PVFVGDEVTAEVEVTALREDKPIATLTTRIFTQGG 119 (132)
T ss_dssp CCBTTCEEEEEEEEEEECSSSSEEEEEEEEECTTS
T ss_pred cCCCcCEEEEEEEEEEEEcCCCEEEEEEEEEECCC
Confidence 46899999999998764444455566666666544
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=9.38 E-value=66 Score=22.94 Aligned_cols=8 Identities=0% Similarity=0.069 Sum_probs=3.0
Q ss_pred HHHhhhee
Q psy8304 550 VSACLCIR 557 (593)
Q Consensus 550 va~~L~~r 557 (593)
+..+++.|
T Consensus 55 ~~~~~f~r 62 (64)
T d2iuba2 55 IMVVYFKK 62 (64)
T ss_dssp HHHTTTTS
T ss_pred HHHHHHhc
Confidence 33344433
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.45 E-value=1.3e+02 Score=19.34 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=12.7
Q ss_pred eeechhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8304 526 ICMTTIGFSATLFVLLGILVVSCLVSACL 554 (593)
Q Consensus 526 iC~S~~~f~~~~v~ll~~llvs~~va~~L 554 (593)
+=+.-.+.++++. +|++++++++.+.
T Consensus 10 veLNrtsLy~GlL---lifvl~vLFssYf 35 (37)
T d2axtl1 10 VELNRTSLYLGLL---LILVLALLFSSYF 35 (37)
T ss_dssp BCCCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cccchhhHHHHHH---HHHHHHHHHHHHh
Confidence 3344566666543 3344455555443
No 6
>d1z6ba1 d.38.1.6 (A:84-229) (3R)-hydroxymyristoyl ACP dehydrase FabZ {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=7.34 E-value=1.6e+02 Score=23.89 Aligned_cols=33 Identities=18% Similarity=0.071 Sum_probs=24.7
Q ss_pred ceeecCCEEEEEEEEecCCCcceEEEeEEEEec
Q psy8304 318 GLVKIGQTMTMVLAIKDDDSKFDMLVRNCMAHD 350 (593)
Q Consensus 318 ~~V~IGd~L~l~v~i~~~~~~~~l~V~sC~Atd 350 (593)
+.|..||.|.+++++..-...+++.--+|.|.-
T Consensus 98 ~~v~PGd~l~i~~~i~~~~~~~~i~~~~~~a~v 130 (146)
T d1z6ba1 98 KPVLPGDTLTMQANLISFKSSLGIAKLSGVGYV 130 (146)
T ss_dssp SCCCTTCEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred ceEecCCEEEEEEEEEEEecCccEEEEEEEEEE
Confidence 367889999999998754455667667777763
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=7.15 E-value=58 Score=25.09 Aligned_cols=9 Identities=11% Similarity=0.135 Sum_probs=3.7
Q ss_pred hhheeeccc
Q psy8304 553 CLCIRLRPF 561 (593)
Q Consensus 553 ~L~~r~r~~ 561 (593)
+..+|.|++
T Consensus 38 ~~~~ryR~~ 46 (91)
T d1fftb2 38 GFAWKYRAS 46 (91)
T ss_dssp TTTTTTTTS
T ss_pred hhheeeecc
Confidence 333444443
No 8
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=6.95 E-value=2.3e+02 Score=23.24 Aligned_cols=8 Identities=38% Similarity=0.206 Sum_probs=4.1
Q ss_pred cccccccc
Q psy8304 19 FAEKTEVP 26 (593)
Q Consensus 19 ~~~~~~~~ 26 (593)
||-+|+||
T Consensus 53 lalkTpvw 60 (137)
T d1jvra_ 53 LALKTPIW 60 (137)
T ss_dssp HHHTCTTS
T ss_pred HHHhCccc
Confidence 44455555
No 9
>d2bi0a1 d.38.1.4 (A:8-185) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.88 E-value=2.7e+02 Score=23.19 Aligned_cols=35 Identities=9% Similarity=0.018 Sum_probs=22.8
Q ss_pred ceeecCCEEEEEEEEecC--------CCcceEEEeEEEEecCC
Q psy8304 318 GLVKIGQTMTMVLAIKDD--------DSKFDMLVRNCMAHDGK 352 (593)
Q Consensus 318 ~~V~IGd~L~l~v~i~~~--------~~~~~l~V~sC~Atdg~ 352 (593)
..|.+||+|+.+++|.+. ...++|.--.+.+++..
T Consensus 94 ~PV~~GDTl~~~~eV~~~r~~~srp~~~~~GiV~~~~~~~NQ~ 136 (178)
T d2bi0a1 94 RFPAVGDTLYTRTEVVGLRANSPKPGRAPTGLAGLRMTTIDRT 136 (178)
T ss_dssp SCCBTTCEEEEEEEEEEEEECCCCTTSCCEEEEEEEEEEECTT
T ss_pred eeccCCCEEEEEEEEEEEEecCCCCCCCcceEEEEEEEEEcCC
Confidence 357999999999998642 12345555556665543
No 10
>d1oqek_ g.24.1.2 (K:) Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.75 E-value=29 Score=21.59 Aligned_cols=13 Identities=54% Similarity=1.007 Sum_probs=10.1
Q ss_pred cceEEEeEEEEec
Q psy8304 338 KFDMLVRNCMAHD 350 (593)
Q Consensus 338 ~~~l~V~sC~Atd 350 (593)
-|+++|++|+|--
T Consensus 9 cfd~lvr~cvac~ 21 (31)
T d1oqek_ 9 CFDLLVRHCVACG 21 (31)
T ss_dssp EEETTTTEEEEGG
T ss_pred HhcHHHHHhhhhh
Confidence 4788899999853
Done!