RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8304
(593 letters)
>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP
domain, ZP module, egg-sperm interaction, species-specif
recognition, speciation; HET: A2G FLC; 2.00A {Gallus
gallus} PDB: 3nk3_A*
Length = 297
Score = 82.3 bits (202), Expect = 2e-17
Identities = 36/266 (13%), Positives = 82/266 (30%), Gaps = 22/266 (8%)
Query: 167 VKCEKNSMKVFISFDKPFFGIVFSKG--HYSNVNCVHLPAGLGRTSANFEIGIHACGTSG 224
V+C++ + V + D G + + C H + F G+H CG+
Sbjct: 6 VQCQEAQLVVTVHRDLFGTGRLINAADLTLGPAACKHSSLNAAHNTVTFAAGLHECGSVV 65
Query: 225 NTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTFRPFPV 284
+ +I P V + Y + +
Sbjct: 66 QVT----------PDTLIYRTLINYDPSPASNPVIIRTNPAVIPIECHYPRREQVSSNAI 115
Query: 285 DMLDVVRADFAGDNVGCWMQIQVGKGPWASEV-SGLVKIGQTMTMVLAIK-DDDSKFDML 342
+++ W++E ++G + + + ++ +
Sbjct: 116 RPTWSPFNSALSAEERLVFSLRLMSDDWSTERPFTGFQLGDILNIQAEVSTENHVPLRLF 175
Query: 343 VRNCMAH---DGKRAP-IQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFP 398
V +C+A DG +P ++D GC+ ++ + VL + F+F
Sbjct: 176 VDSCVAALSPDGDSSPHYAIIDFNGCLVDGRVDDTSSAFITPRPREDVLRF-RIDVFRFA 234
Query: 399 --DSMEVHFQCTIQICRY-QCPDQCS 421
+ ++ C +++ Q PD +
Sbjct: 235 GDNRNLIYITCHLKVTPADQGPDPQN 260
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 1e-05
Identities = 96/636 (15%), Positives = 159/636 (25%), Gaps = 260/636 (40%)
Query: 6 IVSTQLQITTGSQFAEKTEVPN---------VSKVE-------------EQPKQAQNRE- 42
+++QLQ QF + P + E E K Q +
Sbjct: 28 FIASQLQ----EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 43 ------DAEST-----D--QVASETSSDQESQQSAPKH---GY------VDRPPPPPAPI 80
+ E+ D +A++ + ++ K Y RP
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD----- 138
Query: 81 VAPPRPHPNG--RHPSHGK----PQFNHKLGG-------------VYHGPPPPPPPL--- 118
+ + R G F GG +Y L
Sbjct: 139 ----KKSNSALFRAVGEGNAQLVAIF----GGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 119 ----------SAAKPPPVQPEAMDK----SGYGPPPPPPLLAPAPDPWPNAVADTPKIVS 164
+ V + ++ P L P
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP--------------- 235
Query: 165 LDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHACGTSG 224
IS P G++ HY V LG T + G +G
Sbjct: 236 -------------ISC--PLIGVI-QLAHYV-VTAK----LLGFTPGELR--SYLKGATG 272
Query: 225 NTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTF----- 279
+++ GL A A + + W+ ++ K++T
Sbjct: 273 HSQ-GLVTAVAIAETDS-----------------WE-------SFFVSVRKAITVLFFIG 307
Query: 280 ----RPFPVDMLD-VVRADFAGDNVG--CWM---------QIQ--VGK----GPWASEVS 317
+P L + D +N G M Q+Q V K P +V
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 318 -GLVKIGQTMTMVLA--IKDDDSKFDMLVRNCMAHDGK---RAPIQLVDQRG--CVTR-- 367
LV G +V++ + ++ +R A G R P +R R
Sbjct: 368 ISLV-NGAKN-LVVSGPPQSLYG-LNLTLRKAKAPSGLDQSRIPF---SERKLKFSNRFL 421
Query: 368 -------SKLMSRFTKIKNFGASASVLSYAHFQAFKFPDSMEVHFQCTIQICRYQCPDQC 420
S L+ AS + F I + Y
Sbjct: 422 PVASPFHSHLLV--------PASDLINKDLVKNNVSFNAK-----DIQIPV--Y-----D 461
Query: 421 SSDSGDLHPQHTQLLEAH-----------HSSSNVEATYGNNLPIDVFLHGGSGGQPRDE 469
+ D DL + E +++ +AT+ I F G GG
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH-----ILDF---GPGGASGLG 513
Query: 470 RRVRRHRRDTGEKEDIGVNKIIKVVSTGDLTFALDD 505
R++ TG ++V+ G L DD
Sbjct: 514 VLTHRNKDGTG----------VRVIVAGTLDINPDD 539
Score = 32.7 bits (74), Expect = 0.47
Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 45/137 (32%)
Query: 445 EATYG--------NNLPIDVFLH-GGSGGQPRDERRVRRHRRDTGEKEDIGVNKIIKVV- 494
+ TYG NN P+++ +H GG G+ R +T + KI K +
Sbjct: 1654 KDTYGFSILDIVINN-PVNLTIHFGGEKGK-RIRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 495 -STGDLTFALDDS--NSTS--QTMIFPTNMEDNSGMICMTTIGFSATLFVLL---GILVV 546
+ TF + ++T Q P +T + +A F L G++
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFTQ----P----------ALTLMEKAA--FEDLKSKGLIPA 1755
Query: 547 SCLV--------SACLC 555
+A L
Sbjct: 1756 DATFAGHSLGEYAA-LA 1771
Score = 32.3 bits (73), Expect = 0.50
Identities = 50/300 (16%), Positives = 86/300 (28%), Gaps = 118/300 (39%)
Query: 251 YD--PQVQEVWDQARKLRCTWHDQYEKSVTFRPFPVDMLDVVRADFAGDNVGCWMQIQVG 308
Y Q+VW++A D + K + +LD+V +N
Sbjct: 1636 YKTSKAAQDVWNRA--------DNHFKDT----YGFSILDIVI-----NN---------- 1668
Query: 309 KGPWASEVSGLVKIGQTMTMVLAIKDDDSKFDMLVRNCMAHDGKRAPIQLVDQRGCVTRS 368
P + + G+ I+++ S M+ + DGK ++ + + +
Sbjct: 1669 --PVNLTIHFGGEKGK------RIRENYSA--MIFETIV--DGKLKTEKIFKEINEHS-T 1715
Query: 369 KLMSRFTKIKNFGASASVL-------------SYAHFQAFK----FPDSMEV--H----- 404
F + +L A F+ K P H
Sbjct: 1716 SYT--------FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY 1767
Query: 405 -----------FQCTIQICRYQCPDQCSSDSGDLHPQHTQLLEAHHSSSNVEATYG---- 449
+ +++ Y+ G + A + YG
Sbjct: 1768 AALASLADVMSIESLVEVVFYR---------GMT------MQVAVPRDELGRSNYGMIAI 1812
Query: 450 NNLPIDVFLHGGSGGQPRDERRVRRHRRDTGEKEDIGVN-----KIIKVVSTGDLTFALD 504
N P V S Q + V R + TG +I VN + V + GDL ALD
Sbjct: 1813 N--PGRV---AASFSQEALQYVVERVGKRTGWLVEI-VNYNVENQQY-VAA-GDLR-ALD 1863
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 45.4 bits (107), Expect = 2e-05
Identities = 17/86 (19%), Positives = 19/86 (22%), Gaps = 3/86 (3%)
Query: 61 QQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSA 120
Q P+ A P P PPP
Sbjct: 140 QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPM 199
Query: 121 AKPPPVQPEAMDKSGYGPP---PPPP 143
P + P G PP PPPP
Sbjct: 200 GPPMGIPPGRGTPMGMPPPGMRPPPP 225
Score = 44.6 bits (105), Expect = 3e-05
Identities = 19/85 (22%), Positives = 22/85 (25%), Gaps = 10/85 (11%)
Query: 72 RPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAM 131
P A + P G PPPP A P + P
Sbjct: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGR--------GGPPPPMGRGAPPPGMMGPPPG 194
Query: 132 DKSGYGPPP--PPPLLAPAPDPWPN 154
+ GPP PP P P P
Sbjct: 195 MRPPMGPPMGIPPGRGTPMGMPPPG 219
Score = 44.3 bits (104), Expect = 4e-05
Identities = 16/82 (19%), Positives = 22/82 (26%), Gaps = 1/82 (1%)
Query: 73 PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMD 132
P P +A P G PQ + + + PP +
Sbjct: 119 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAA-AAAATASIAGAPTQYPPGRGGPPP 177
Query: 133 KSGYGPPPPPPLLAPAPDPWPN 154
G G PPP + P P
Sbjct: 178 PMGRGAPPPGMMGPPPGMRPPM 199
Score = 43.1 bits (101), Expect = 1e-04
Identities = 18/75 (24%), Positives = 21/75 (28%)
Query: 73 PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMD 132
A A P P G P G G PPP + PP+
Sbjct: 150 VAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGR 209
Query: 133 KSGYGPPPPPPLLAP 147
+ G PPP P
Sbjct: 210 GTPMGMPPPGMRPPP 224
Score = 41.6 bits (97), Expect = 3e-04
Identities = 16/108 (14%), Positives = 22/108 (20%)
Query: 48 DQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGV 107
+ + S T + + + P A R P G + GV
Sbjct: 75 ENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGV 134
Query: 108 YHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNA 155
P A P PP P P
Sbjct: 135 GGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRG 182
Score = 40.4 bits (94), Expect = 9e-04
Identities = 14/78 (17%), Positives = 18/78 (23%)
Query: 72 RPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAM 131
R P+ V P+ + Y PPP PP
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP 191
Query: 132 DKSGYGPPPPPPLLAPAP 149
P PP + P
Sbjct: 192 PPGMRPPMGPPMGIPPGR 209
Score = 36.9 bits (85), Expect = 0.011
Identities = 23/82 (28%), Positives = 23/82 (28%), Gaps = 16/82 (19%)
Query: 60 SQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLS 119
S AP R PPP P P G P P GPP PP
Sbjct: 160 SIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPM----------GPPMGIPPGR 209
Query: 120 AAKPPPVQPEAMDKSGYGPPPP 141
P G PPPP
Sbjct: 210 GTPMGMPPP------GMRPPPP 225
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 46.4 bits (109), Expect = 2e-05
Identities = 13/96 (13%), Positives = 23/96 (23%)
Query: 62 QSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAA 121
Q+ ++G P PA + P P G + + P
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70
Query: 122 KPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVA 157
+ +M+ P A P +
Sbjct: 71 QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMG 106
Score = 44.4 bits (104), Expect = 9e-05
Identities = 15/101 (14%), Positives = 23/101 (22%), Gaps = 4/101 (3%)
Query: 60 SQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPP----PP 115
S P + P + + + + L V P P
Sbjct: 41 SYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQ 100
Query: 116 PPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAV 156
P+ P Q + M YG P P +
Sbjct: 101 VPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPI 141
Score = 44.0 bits (103), Expect = 1e-04
Identities = 11/109 (10%), Positives = 22/109 (20%), Gaps = 2/109 (1%)
Query: 54 TSSDQESQQSAPKH--GYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGP 111
+ Q Q + P P P A ++ + + Q
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70
Query: 112 PPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
++ + + P P+ P P
Sbjct: 71 QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAP 119
Score = 43.7 bits (102), Expect = 2e-04
Identities = 13/107 (12%), Positives = 24/107 (22%)
Query: 58 QESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPP 117
Q+ + +G + PP P + + + H + H P
Sbjct: 33 QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92
Query: 118 LSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVS 164
+A P V + P P +
Sbjct: 93 PNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLY 139
Score = 42.1 bits (98), Expect = 6e-04
Identities = 15/109 (13%), Positives = 23/109 (21%), Gaps = 6/109 (5%)
Query: 49 QVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVY 108
Q + Q+ Q P + P P+ P L
Sbjct: 15 QYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQ-LHQQI 73
Query: 109 HGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVA 157
+ P V P + Y P P + +A
Sbjct: 74 DQATTSMNDMHLHNVPLVDP-----NAYMQPQVPVQMGTPLQQQQQPMA 117
Score = 39.8 bits (92), Expect = 0.002
Identities = 13/120 (10%), Positives = 23/120 (19%)
Query: 34 QPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHP 93
P Q + A + + PA +
Sbjct: 21 TPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80
Query: 94 SHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWP 153
+ + + P P + QP A G + P +P
Sbjct: 81 NDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYP 140
Score = 39.4 bits (91), Expect = 0.004
Identities = 13/98 (13%), Positives = 20/98 (20%), Gaps = 7/98 (7%)
Query: 63 SAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAK 122
K Y P P P+ P + G+ +G PP +
Sbjct: 3 HHKKRVY----PQAQLQYGQNATPLQQ---PAQFMPPQDPAAAGMSYGQMGMPPQGAVPS 55
Query: 123 PPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
Q + + N P
Sbjct: 56 MGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDP 93
Score = 37.1 bits (85), Expect = 0.020
Identities = 20/118 (16%), Positives = 28/118 (23%), Gaps = 4/118 (3%)
Query: 49 QVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVY 108
+ + + QQ + H + P + V
Sbjct: 46 GMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHN-VPLVDPNAYMQPQVPVQ 104
Query: 109 HGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPP---PPPLLAPAPDPWPNAVADTPKIV 163
G P A P QP A P P LL P P + P +V
Sbjct: 105 MGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLV 162
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 44.4 bits (104), Expect = 9e-05
Identities = 21/106 (19%), Positives = 27/106 (25%), Gaps = 11/106 (10%)
Query: 63 SAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSA-A 121
S+ H + P + P + P PPPPP A
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVT---SAASDFLAALHPPVTVPDPAPPPPPAPAAG 59
Query: 122 KPPPVQPEAMDK-------SGYGPPPPPPLLAPAPDPWPNAVADTP 160
PP +G G P + P P A A P
Sbjct: 60 NPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAP 105
Score = 38.6 bits (89), Expect = 0.005
Identities = 16/127 (12%), Positives = 28/127 (22%), Gaps = 1/127 (0%)
Query: 46 STDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLG 105
S+ V + S PP + P P P +
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70
Query: 106 GVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPP-LLAPAPDPWPNAVADTPKIVS 164
P P ++ P PP P P D ++
Sbjct: 71 LQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEE 130
Query: 165 LDVKCEK 171
+ + ++
Sbjct: 131 VSRRIKR 137
Score = 34.7 bits (79), Expect = 0.073
Identities = 18/118 (15%), Positives = 29/118 (24%), Gaps = 4/118 (3%)
Query: 38 AQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGK 97
+ + + + +A PP PP P P +P
Sbjct: 6 HHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTV 65
Query: 98 PQFN----HKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDP 151
+ G G P + + P + A G P P P+P
Sbjct: 66 TGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEP 123
Score = 32.0 bits (72), Expect = 0.56
Identities = 11/59 (18%), Positives = 15/59 (25%), Gaps = 3/59 (5%)
Query: 104 LGGVYHGPPPP---PPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADT 159
+G +H P S P + PP + P P A A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAG 59
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 41.8 bits (98), Expect = 5e-04
Identities = 27/118 (22%), Positives = 35/118 (29%), Gaps = 17/118 (14%)
Query: 41 REDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQF 100
+D E+ D +ET A + A + +P G
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMA--MMQKMQQQQAAYPPQG---- 392
Query: 101 NHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPP--PPLLAPAPDPWPNAV 156
+ PPP P P P+ GY PPP PP AP P P V
Sbjct: 393 --------YAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAP-PQGV 441
Score = 39.1 bits (91), Expect = 0.004
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 11/117 (9%)
Query: 20 AEKTEVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAP 79
++TE ++ E ++ + + Q+ + Q+ QQ PP
Sbjct: 341 DKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQA--------AYPPQG 392
Query: 80 IVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGY 136
PP+ +P +P G P + G Y PP PP A PP P+ +D Y
Sbjct: 393 YAPPPQGYPPQGYPPQGYPPQGYPPQG-YPPPPQGAPPQGA--PPAAPPQGVDNQAY 446
Score = 36.4 bits (84), Expect = 0.026
Identities = 18/110 (16%), Positives = 24/110 (21%), Gaps = 11/110 (10%)
Query: 35 PKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPS 94
+ ED + + S + + P P
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397
Query: 95 HGKPQFNHKLGGVYHGPPPPPPPLSAAKPP--PVQPEAMDKSGYGPPPPP 142
G P G PP P P P P+ G P PP
Sbjct: 398 QGYPP---------QGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPP 438
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 40.6 bits (94), Expect = 9e-04
Identities = 15/90 (16%), Positives = 21/90 (23%), Gaps = 3/90 (3%)
Query: 64 APKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKP 123
AP + R AP+ A + + P P PPP +
Sbjct: 16 APTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQA 75
Query: 124 PPVQPEAMDKSGYGPPPPPPLLAPAPDPWP 153
P P+ P P
Sbjct: 76 PKQPPKPKKPK---PQEKKKKQPAKTKPGK 102
Score = 31.3 bits (70), Expect = 0.82
Identities = 13/82 (15%), Positives = 19/82 (23%), Gaps = 10/82 (12%)
Query: 60 SQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLS 119
+ SA G RP P + + P KP+ +
Sbjct: 47 TAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPK----------PQEKKKKQPA 96
Query: 120 AAKPPPVQPEAMDKSGYGPPPP 141
KP Q A+
Sbjct: 97 KTKPGKRQRMALKLEADRLFDV 118
Score = 27.9 bits (61), Expect = 9.6
Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 10/115 (8%)
Query: 34 QPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHP 93
+Q ++ + + ++ ++ + P + P P P + P
Sbjct: 36 NGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQP 95
Query: 94 SHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPA 148
+ KP L A + V+ E D G+ ++ P
Sbjct: 96 AKTKPG----------KRQRMALKLEADRLFDVKNEDGDVIGHALAMEGKVMKPL 140
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 40.1 bits (93), Expect = 0.001
Identities = 26/149 (17%), Positives = 37/149 (24%), Gaps = 17/149 (11%)
Query: 16 GSQFAEKTEVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPP 75
S + +V +V E P AQ + + Q P V P P
Sbjct: 10 SSGLVPRGSHMSVHQVIELPAPAQ------PISVTMVTPADLEPPQAVQPPPEPVVEPEP 63
Query: 76 PPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSG 135
P PI PP+ P KP+ P P P +P +
Sbjct: 64 EPEPIPEPPKEAPVVIEKPKPKPK-----------PKPKPVKKVQEQPKRDVKPVESRPA 112
Query: 136 YGPPPPPPLLAPAPDPWPNAVADTPKIVS 164
P + + S
Sbjct: 113 SPFENTAPARLTSSTATAATSKPVTSVAS 141
Score = 31.6 bits (71), Expect = 0.50
Identities = 13/124 (10%), Positives = 24/124 (19%), Gaps = 14/124 (11%)
Query: 20 AEKTEVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAP 79
A+ V E + + + + ++ + PK V + P
Sbjct: 43 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 102
Query: 80 IVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPP 139
V P P + P + A
Sbjct: 103 DVKPVESRPASPFEN--------------TAPARLTSSTATAATSKPVTSVASGPRALSR 148
Query: 140 PPPP 143
P
Sbjct: 149 NQPQ 152
Score = 31.6 bits (71), Expect = 0.54
Identities = 21/127 (16%), Positives = 35/127 (27%), Gaps = 1/127 (0%)
Query: 20 AEKTEVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAP 79
A+ V V+ + +P QA + E + E E + AP +P P P P
Sbjct: 32 AQPISVTMVTPADLEPPQAV-QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP 90
Query: 80 IVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPP 139
R + + +A P + ++
Sbjct: 91 KPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQ 150
Query: 140 PPPPLLA 146
P P A
Sbjct: 151 PQYPARA 157
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 38.5 bits (89), Expect = 0.004
Identities = 16/93 (17%), Positives = 20/93 (21%), Gaps = 9/93 (9%)
Query: 61 QQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFN--HKLGGVYHGPPPPPPPL 118
Q+ + P P PP P R PS + L
Sbjct: 6 TQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKK 65
Query: 119 SAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDP 151
PPP + P P P
Sbjct: 66 PKKTPPPKPKK-------TQKPKKPTQKKKSKP 91
Score = 33.5 bits (76), Expect = 0.17
Identities = 12/74 (16%), Positives = 15/74 (20%), Gaps = 5/74 (6%)
Query: 72 RPPPPPAPIVAPPRPHPNGRHP-----SHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPV 126
+ P APPR + G K P P K
Sbjct: 20 QRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKTQK 79
Query: 127 QPEAMDKSGYGPPP 140
+ K P
Sbjct: 80 PKKPTQKKKSKPGK 93
Score = 28.1 bits (62), Expect = 7.7
Identities = 13/81 (16%), Positives = 15/81 (18%), Gaps = 13/81 (16%)
Query: 75 PPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKS 134
P RP P R+ PP PP A+
Sbjct: 5 PTQTFYGRRWRPAPVQRYIP-------------QPQPPAPPRRRRGPSQLQQLVAALGAL 51
Query: 135 GYGPPPPPPLLAPAPDPWPNA 155
P P P
Sbjct: 52 ALQPKQKQKRAQKKPKKTPPP 72
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 37.4 bits (85), Expect = 0.007
Identities = 15/88 (17%), Positives = 27/88 (30%)
Query: 73 PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMD 132
PP PP P P + + S + F ++ P ++ P +
Sbjct: 39 PPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPG 98
Query: 133 KSGYGPPPPPPLLAPAPDPWPNAVADTP 160
++ L A + +P V T
Sbjct: 99 ETAASEAASSSLPAVVVETFPATVNGTV 126
Score = 36.2 bits (82), Expect = 0.019
Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 11/93 (11%)
Query: 72 RPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAM 131
R P P + PS + GPP PPPP Q + +
Sbjct: 11 RVNHEPEPAGGATPGATLPKSPSQLR-----------KGPPVPPPPKHTPSKEVKQEQIL 59
Query: 132 DKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVS 164
P + P+ + VA + +
Sbjct: 60 SLFEDTFVPEISVTTPSQPAEASEVAGGTQPAA 92
Score = 33.5 bits (75), Expect = 0.11
Identities = 14/111 (12%), Positives = 26/111 (23%)
Query: 50 VASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYH 109
A+ + A P P+ + P P +H + + L
Sbjct: 5 AATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFED 64
Query: 110 GPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
P + ++P A P A + + A
Sbjct: 65 TFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVV 115
Score = 30.4 bits (67), Expect = 1.1
Identities = 13/143 (9%), Positives = 27/143 (18%), Gaps = 11/143 (7%)
Query: 23 TEVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVA 82
+ PK T S + Q+ + P +
Sbjct: 17 EPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL--FEDTFVPEISVTT 74
Query: 83 PPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPP 142
P +P +P G P ++ P + ++
Sbjct: 75 PSQPAEASEVAGGTQPAA---------GAQEPGETAASEAASSSLPAVVVETFPATVNGT 125
Query: 143 PLLAPAPDPWPNAVADTPKIVSL 165
K+ +
Sbjct: 126 VEGGSGAGRLDLPPGFMFKVQAQ 148
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 37.9 bits (87), Expect = 0.007
Identities = 21/161 (13%), Positives = 37/161 (22%), Gaps = 4/161 (2%)
Query: 1 MKTYKIVSTQLQITTGSQFAEKTEVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQES 60
++ YK QL+ ++ + ++ E Q+ +
Sbjct: 178 LEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMST--ITGPVPREFKSQLQEAPLEWKAL 235
Query: 61 QQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSA 120
+ ++ S KP +G V G P
Sbjct: 236 LEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPG-TSSIGNVNPGSYGPGSS-GT 293
Query: 121 AKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPK 161
P +P + G P P P A T
Sbjct: 294 WNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWN 334
Score = 37.9 bits (87), Expect = 0.007
Identities = 15/127 (11%), Positives = 27/127 (21%)
Query: 27 NVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRP 86
++ + Q KQ + + + + AP+
Sbjct: 177 DLEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALL 236
Query: 87 HPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLA 146
+ G P S KP ++ YGP
Sbjct: 237 EMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNP 296
Query: 147 PAPDPWP 153
P+P
Sbjct: 297 GRPEPGS 303
Score = 36.8 bits (84), Expect = 0.017
Identities = 16/154 (10%), Positives = 34/154 (22%), Gaps = 3/154 (1%)
Query: 8 STQLQITTGSQFAEKTEVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKH 67
+ + ++ ++ ++ V + P + + + +SQ
Sbjct: 171 ALEHKVDLEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPL 230
Query: 68 GYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQ 127
+ +V G + G P + P
Sbjct: 231 EWKALLEMQQTKMVLET---FGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYG 287
Query: 128 PEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPK 161
P + G P P P A T
Sbjct: 288 PGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWN 321
Score = 36.4 bits (83), Expect = 0.022
Identities = 17/137 (12%), Positives = 27/137 (19%), Gaps = 3/137 (2%)
Query: 26 PNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPR 85
P + + Q ++A A Q A P P
Sbjct: 216 PVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGT 275
Query: 86 PHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMD--KSGYGPPPPPP 143
+P P + P + +P P + + G
Sbjct: 276 SSIGNVNPGSYGPG-SSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWN 334
Query: 144 LLAPAPDPWPNAVADTP 160
P P P
Sbjct: 335 PGRPEPGSAGTWNPGRP 351
Score = 32.9 bits (74), Expect = 0.28
Identities = 21/146 (14%), Positives = 31/146 (21%), Gaps = 10/146 (6%)
Query: 19 FAEKTEVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPA 78
E + V + A+ ++ T S G
Sbjct: 235 LLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTW 294
Query: 79 PIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPE----AMDKS 134
P +P +P G P P P SA P +PE
Sbjct: 295 NPGRPEPGSAGTWNPGRPEP------GSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNP 348
Query: 135 GYGPPPPPPLLAPAPDPWPNAVADTP 160
G P + D+
Sbjct: 349 GRPEPGSAGTWNTGSSGSSSFRPDSS 374
Score = 32.1 bits (72), Expect = 0.44
Identities = 19/146 (13%), Positives = 28/146 (19%), Gaps = 8/146 (5%)
Query: 12 QITTGSQFAEKTEVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVD 71
Q + V + A T + + S +
Sbjct: 240 QTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRP 299
Query: 72 RPPPPPAPIVAPPRP----HPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQ 127
P P P N P G G G P +P P
Sbjct: 300 EPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTW-NPGRPEPGSAGTWNP---GRPEPGS 355
Query: 128 PEAMDKSGYGPPPPPPLLAPAPDPWP 153
+ G P + + P
Sbjct: 356 AGTWNTGSSGSSSFRPDSSGHGNIRP 381
Score = 32.1 bits (72), Expect = 0.54
Identities = 14/84 (16%), Positives = 21/84 (25%), Gaps = 9/84 (10%)
Query: 60 SQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLS 119
+ + RP P A P RP P P G G
Sbjct: 312 PEPGSAGTWNPGRPEPGSAGTWNPGRPEPGS--AGTWNP------GRPEPGSAGTWNT-G 362
Query: 120 AAKPPPVQPEAMDKSGYGPPPPPP 143
++ +P++ P P
Sbjct: 363 SSGSSSFRPDSSGHGNIRPSSPDW 386
Score = 32.1 bits (72), Expect = 0.55
Identities = 17/144 (11%), Positives = 31/144 (21%), Gaps = 4/144 (2%)
Query: 21 EKTEVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPI 80
+ E P K + +Q + + D A S Q + +
Sbjct: 224 QLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNP 283
Query: 81 VAPPRPHPNGRHPSHGKPQF--NHKLGGVYHGPPPPPPPLSAA--KPPPVQPEAMDKSGY 136
+ +P +P G G P P +
Sbjct: 284 GSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSA 343
Query: 137 GPPPPPPLLAPAPDPWPNAVADTP 160
G P + W + +
Sbjct: 344 GTWNPGRPEPGSAGTWNTGSSGSS 367
Score = 29.8 bits (66), Expect = 2.9
Identities = 22/103 (21%), Positives = 30/103 (29%), Gaps = 6/103 (5%)
Query: 60 SQQSAPKHGYVDRPPPPPAPIVAPPRPHP-NGRHPSHGKPQFNHKLGGVYHGPPPPPPPL 118
+ RP P A P RP P + + G+P+ G P P P
Sbjct: 286 YGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPE----PGSAGTWNPGRPEPG 341
Query: 119 SAAKPPPVQPEAMDKSGYGPPPP-PPLLAPAPDPWPNAVADTP 160
SA P +PE + P N +P
Sbjct: 342 SAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSP 384
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 37.7 bits (87), Expect = 0.008
Identities = 22/128 (17%), Positives = 33/128 (25%), Gaps = 11/128 (8%)
Query: 45 ESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPP--RPHPNGRHPSHGKPQFNH 102
E+ QV SD + + P + P P P +
Sbjct: 5 EAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHG 64
Query: 103 KLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKI 162
L G P + + P P GY +PA P +
Sbjct: 65 SLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPAS---------IPHL 115
Query: 163 VSLDVKCE 170
+ +KCE
Sbjct: 116 ILELLKCE 123
Score = 30.0 bits (67), Expect = 2.4
Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 8/95 (8%)
Query: 72 RPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGP------PPPPPPLSAAKPPP 125
P + + L P P P+S PP
Sbjct: 4 LEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPH 63
Query: 126 VQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
+ YG P + + PDP+ ++
Sbjct: 64 GSLQG--YQTYGHFPSRAIKSEYPDPYTSSPESIM 96
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 37.1 bits (85), Expect = 0.008
Identities = 15/100 (15%), Positives = 20/100 (20%), Gaps = 1/100 (1%)
Query: 61 QQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSA 120
P G PP +PH G + GG + P
Sbjct: 16 GSRYPGQGSPGGNRYPPQGGGGWGQPHGGG-WGQPHGGGWGQPHGGGWGQPHGGGWGQPH 74
Query: 121 AKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
Q + P + A AV
Sbjct: 75 GGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGL 114
Score = 33.7 bits (76), Expect = 0.11
Identities = 13/72 (18%), Positives = 14/72 (19%)
Query: 72 RPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAM 131
RP P R G + P G HG P P
Sbjct: 5 RPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 64
Query: 132 DKSGYGPPPPPP 143
G P
Sbjct: 65 PHGGGWGQPHGG 76
Score = 32.9 bits (74), Expect = 0.23
Identities = 17/101 (16%), Positives = 21/101 (20%), Gaps = 7/101 (6%)
Query: 61 QQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSA 120
+ PK G P P + G Q + G HG P
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61
Query: 121 AKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPK 161
P G+G P PK
Sbjct: 62 WGQPHGG-------GWGQPHGGGGWGQGGTHGQWNKPSKPK 95
Score = 31.4 bits (70), Expect = 0.67
Identities = 13/94 (13%), Positives = 17/94 (18%), Gaps = 8/94 (8%)
Query: 55 SSDQESQQSAPKHGYVDRPPPPPAPIVAP-----PRPHPNGRHPSHGKPQFNHKLGGVYH 109
++ G PP P +PH G HG GG
Sbjct: 13 NTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 72
Query: 110 GPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPP 143
+P K
Sbjct: 73 PHGGGGWGQGGTHGQWNKP---SKPKTNMKHVAG 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 37.9 bits (88), Expect = 0.009
Identities = 14/93 (15%), Positives = 20/93 (21%), Gaps = 7/93 (7%)
Query: 72 RPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPV----Q 127
P P + I +P R + L G H + A P+
Sbjct: 337 VPRPGLSTIFSPSRSTFGVDLLVAHTDVY---LDGQVHAEKLTANEIVTALSVPLVDPTD 393
Query: 128 PEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
A P L A+
Sbjct: 394 VAASVLQATVLSQPVQTLDSLRAARHGALDADG 426
Score = 31.7 bits (72), Expect = 0.69
Identities = 12/103 (11%), Positives = 19/103 (18%), Gaps = 17/103 (16%)
Query: 73 PPPPPAPIVAPP---------RPHPNGRHPSHGKPQFNHKLGGV------YHGPPPPPPP 117
P P P P R + + + +L GV P P
Sbjct: 285 PEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAE--EMSAQLTGVLREVVAQDTGVPRPGL 342
Query: 118 LSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
+ P + + V
Sbjct: 343 STIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALS 385
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 37.0 bits (85), Expect = 0.010
Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 12/84 (14%)
Query: 60 SQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLS 119
++Q + R + + P G PQ GG G P P
Sbjct: 148 NKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQ-----GGRGRGRFPGAVPGG 202
Query: 120 AAKPPPVQPEAMDKSGYGPPPPPP 143
P P P GPPPP P
Sbjct: 203 DRFPGPAGP-------GGPPPPFP 219
Score = 33.2 bits (75), Expect = 0.17
Identities = 17/85 (20%), Positives = 20/85 (23%), Gaps = 11/85 (12%)
Query: 44 AESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHK 103
E S + +Q PP + P GR P
Sbjct: 147 VNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFP---------- 196
Query: 104 LGGVYHGPPPPPPPLSAAKPPPVQP 128
G V G P P PPP
Sbjct: 197 -GAVPGGDRFPGPAGPGGPPPPFPA 220
Score = 32.8 bits (74), Expect = 0.24
Identities = 13/79 (16%), Positives = 17/79 (21%), Gaps = 1/79 (1%)
Query: 82 APPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPP 141
+ S Q G GPP + + + G P
Sbjct: 147 VNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFP 206
Query: 142 PPLLAPAPDPWPNAVADTP 160
P P P P T
Sbjct: 207 GPAGPGGPPP-PFPAGQTH 224
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 35.8 bits (83), Expect = 0.040
Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 5/91 (5%)
Query: 43 DAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNH 102
A E ++E + RPPP P +P P P+ R +
Sbjct: 3 PDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFV 62
Query: 103 KLGGVYHGPPPPPPPLSAAKPPPVQPEAMDK 133
PPLS P V+ ++
Sbjct: 63 DTAVEG-----TLPPLSLLDPAEVKQKSYSP 88
Score = 30.4 bits (69), Expect = 2.1
Identities = 19/94 (20%), Positives = 23/94 (24%), Gaps = 16/94 (17%)
Query: 57 DQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPP 116
D+ Q A + RP P P P P
Sbjct: 4 DRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPP----------------SPKAPE 47
Query: 117 PLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPD 150
P P +D + G PP LL PA
Sbjct: 48 PSKRVLKEKQAPLFVDTAVEGTLPPLSLLDPAEV 81
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 34.3 bits (78), Expect = 0.11
Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 10/84 (11%)
Query: 73 PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGP-PPPPPPLSAAKPP-PVQPEA 130
P +A P HP+ P G P G H P P++ PP V
Sbjct: 25 TSPTGRGSMAAPSLHPSL-GPGIGSP-------GQLHSPISTLSSPINGMGPPFSVISSP 76
Query: 131 MDKSGYGPPPPPPLLAPAPDPWPN 154
M P P L P +
Sbjct: 77 MGPHSMSVPTTPTLGFSTGSPQLS 100
Score = 31.2 bits (70), Expect = 0.95
Identities = 16/105 (15%), Positives = 27/105 (25%), Gaps = 7/105 (6%)
Query: 52 SETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGP 111
S Q + ++ PP + I +P PH + LG P
Sbjct: 45 GIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPT-------LGFSTGSP 97
Query: 112 PPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAV 156
P + ++P P P + A+
Sbjct: 98 QLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAI 142
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 34.2 bits (78), Expect = 0.12
Identities = 20/116 (17%), Positives = 29/116 (25%), Gaps = 22/116 (18%)
Query: 73 PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMD 132
P P P VA NG + P PP +A P +
Sbjct: 5 PTSPGTPGVAAATQAANGGPAT-----------------PAPPALGAAPTGDPKPKKNKK 47
Query: 133 KSGYGPPPPPPLLAPAPDPWPNAVADTPKIVSLDVK-----CEKNSMKVFISFDKP 183
PP P A I + + C + + F++P
Sbjct: 48 PKNPTPPRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQP 103
Score = 29.2 bits (65), Expect = 4.4
Identities = 14/87 (16%), Positives = 21/87 (24%)
Query: 63 SAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAK 122
++P V A P P G P+ +K P P + A
Sbjct: 6 TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65
Query: 123 PPPVQPEAMDKSGYGPPPPPPLLAPAP 149
E + + P P
Sbjct: 66 GHATLREHLRDIKAENTDANFYVCPPP 92
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 33.7 bits (76), Expect = 0.15
Identities = 11/39 (28%), Positives = 12/39 (30%)
Query: 111 PPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAP 149
PPPP A P A S P P +P
Sbjct: 33 PPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGS 71
Score = 33.3 bits (75), Expect = 0.21
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 108 YHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDP 151
PPPPPP ++ P A + P AP+P
Sbjct: 28 RPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGS 71
Score = 30.6 bits (68), Expect = 1.7
Identities = 18/60 (30%), Positives = 21/60 (35%)
Query: 109 HGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVSLDVK 168
P PPPPP SAA P A + P AP P + +S VK
Sbjct: 27 QRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVK 86
Score = 30.2 bits (67), Expect = 1.9
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 9/71 (12%)
Query: 54 TSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPP 113
+ S+ + + RP PPP P A G + + P
Sbjct: 10 SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERA---------STAAP 60
Query: 114 PPPPLSAAKPP 124
P + +
Sbjct: 61 VASPAAPSPGS 71
Score = 29.4 bits (65), Expect = 3.7
Identities = 12/85 (14%), Positives = 15/85 (17%), Gaps = 5/85 (5%)
Query: 64 APKHGYVDRPPPPPAPIVAPPRPHP-----NGRHPSHGKPQFNHKLGGVYHGPPPPPPPL 118
PPPPP+ P + G G
Sbjct: 23 MTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLS 82
Query: 119 SAAKPPPVQPEAMDKSGYGPPPPPP 143
+A K A G
Sbjct: 83 NAVKQTTAAAAATFSEQVGGGSGGA 107
Score = 29.0 bits (64), Expect = 5.0
Identities = 7/45 (15%), Positives = 10/45 (22%)
Query: 111 PPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNA 155
P L +PPP P A + +
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVAS 63
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 33.7 bits (76), Expect = 0.16
Identities = 10/80 (12%), Positives = 15/80 (18%), Gaps = 3/80 (3%)
Query: 70 VDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPE 129
+R P P S+ +G P P +
Sbjct: 239 DERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVG---SVPFSAPTERTRRSETESVNP 295
Query: 130 AMDKSGYGPPPPPPLLAPAP 149
+ L AP
Sbjct: 296 VSTPASVEYHAGMKSLNKAP 315
Score = 31.4 bits (70), Expect = 0.76
Identities = 11/83 (13%), Positives = 17/83 (20%), Gaps = 3/83 (3%)
Query: 61 QQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSA 120
++S + +RP N P
Sbjct: 240 ERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERT---RRSETESVNPV 296
Query: 121 AKPPPVQPEAMDKSGYGPPPPPP 143
+ P V+ A KS P
Sbjct: 297 STPASVEYHAGMKSLNKAPYSSN 319
Score = 31.1 bits (69), Expect = 1.1
Identities = 8/87 (9%), Positives = 15/87 (17%)
Query: 39 QNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKP 98
+++ S K + + + P P R
Sbjct: 232 DLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETE 291
Query: 99 QFNHKLGGVYHGPPPPPPPLSAAKPPP 125
N L+ A
Sbjct: 292 SVNPVSTPASVEYHAGMKSLNKAPYSS 318
Score = 29.1 bits (64), Expect = 4.2
Identities = 13/83 (15%), Positives = 18/83 (21%), Gaps = 5/83 (6%)
Query: 69 YVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPP--V 126
Y+D A I P + P+ F P P + V
Sbjct: 237 YLDERSYQRAVITNRPGSVSPIKSPT---SNFTTNTTQSVGSVPFSAPTERTRRSETESV 293
Query: 127 QPEAMDKSGYGPPPPPPLLAPAP 149
P + S L
Sbjct: 294 NPVSTPASVEYHAGMKSLNKAPY 316
Score = 28.4 bits (62), Expect = 6.9
Identities = 6/71 (8%), Positives = 16/71 (22%)
Query: 29 SKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHP 88
++E+ Q + + +S+ + + P +P
Sbjct: 236 FYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNP 295
Query: 89 NGRHPSHGKPQ 99
S
Sbjct: 296 VSTPASVEYHA 306
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 33.6 bits (77), Expect = 0.19
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 93 PSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPD-P 151
S + G P PP + P + +M + Y P +
Sbjct: 3 TSESPDAYTESFGAHTIVKPAGPPRVGQPSWNPQRASSMPVNRYRPFAEEVEPIRLRNRT 62
Query: 152 WPNAVADT-PKIVSLD 166
WP+ V D P ++D
Sbjct: 63 WPDRVIDRAPLWCAVD 78
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 32.9 bits (74), Expect = 0.25
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 11/78 (14%)
Query: 72 RPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAM 131
A + P + P+ P P + A P +P A
Sbjct: 311 TAVTQEALPGSAPASEAAPAAATEAAPE-----------APAQEVPAAEAVPAAAEPGAA 359
Query: 132 DKSGYGPPPPPPLLAPAP 149
+ +G P P +APAP
Sbjct: 360 EAAGSVEPAPVEEVAPAP 377
>3qw9_A Transforming growth factor beta receptor type 3; cytokine receptor,
immunoglobulin domain, ZONA pellucida, TG ligand
CO-receptor; HET: NAG BMA FUC MAN; 2.00A {Rattus
norvegicus}
Length = 176
Score = 32.1 bits (72), Expect = 0.25
Identities = 10/108 (9%), Positives = 32/108 (29%), Gaps = 5/108 (4%)
Query: 320 VKIGQTMTMVLAIKDDDSKFDMLVRNCMA---HDGKRAPIQLVDQRGCVTRSKLMSRFTK 376
V + + + +++ D ++ C + R + + C + +K
Sbjct: 27 VAENEHVYVEVSVTKADQDLGFAIQTCFLSPYSNPDRMSDYTIIENICPKDDSVKFYSSK 86
Query: 377 IKNFGASASVLSYAHFQ--AFKFPDSMEVHFQCTIQICRYQCPDQCSS 422
+F + + F ++ + C + +C +
Sbjct: 87 RVHFPIPHAEVDKKRFSFLFKSVFNTSLLFLHCELTLCSRKKGSLKLP 134
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 33.2 bits (76), Expect = 0.26
Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 11/104 (10%)
Query: 73 PPPPPAPIVA----------PPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAK 122
P+VA R S G + +L + P P
Sbjct: 131 TYSLTGPLVAATLGIPWIEQSIRLASPELIKSAGVGELAPELAELGLTDFPDPLLSIDVC 190
Query: 123 PPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKI-VSL 165
PP ++ + + P W P++ ++
Sbjct: 191 PPSMEAQPKPGTTKMRYVPYNGRNDQVPSWVFEERKQPRLCLTF 234
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR
{Artemisia vulgaris}
Length = 108
Score = 30.9 bits (69), Expect = 0.36
Identities = 12/47 (25%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 105 GGVYHGPPPPPPPLSAAKPPPVQPEAMD--KSGYGPPPPPPLLAPAP 149
G P PPP + P P + G PP P P
Sbjct: 59 GATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSPPPP 105
Score = 30.2 bits (67), Expect = 0.59
Identities = 18/70 (25%), Positives = 19/70 (27%), Gaps = 30/70 (42%)
Query: 73 PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMD 132
PPPA +P P G PPPP PP
Sbjct: 67 AAPPPAAGGSPSPPADGG----------------------SPPPPADGGSPPV------- 97
Query: 133 KSGYGPPPPP 142
G PPPP
Sbjct: 98 -DGGSPPPPS 106
Score = 28.2 bits (62), Expect = 3.0
Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 95 HGKPQFNHKLGGVYHGPPPPP---PPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDP 151
H + + PP P A PPP + G PPPP +P
Sbjct: 38 HKREAGKESCFCYFDCSKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPV 97
Score = 27.5 bits (60), Expect = 5.0
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 8/40 (20%)
Query: 112 PPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDP 151
PPP + PP + G PPPP P
Sbjct: 67 AAPPPAAGGSPSPP--------ADGGSPPPPADGGSPPVD 98
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 32.6 bits (74), Expect = 0.42
Identities = 15/50 (30%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 111 PPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
P P P S+A P A P P APA V D P
Sbjct: 99 PEPTPAAASSADAAPAAAPAAPA----APAAAPAPAPASAGPAAPVQDAP 144
Score = 30.7 bits (69), Expect = 1.6
Identities = 11/58 (18%), Positives = 15/58 (25%), Gaps = 7/58 (12%)
Query: 111 PPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVSLDVK 168
P +A P P P AP D A +V+ +K
Sbjct: 110 DAAPAAAPAAPAAPAAAPAP-------APASAGPAAPVQDAPVTATDVIRALVAQKLK 160
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 32.4 bits (72), Expect = 0.43
Identities = 21/150 (14%), Positives = 35/150 (23%), Gaps = 8/150 (5%)
Query: 34 QPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHP 93
+ + R + ++ G R PP AP RP R
Sbjct: 12 RRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLR 71
Query: 94 SHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWP 153
V P P + A P + + + PP
Sbjct: 72 LSVDE--------VSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISEL 123
Query: 154 NAVADTPKIVSLDVKCEKNSMKVFISFDKP 183
+ + + V+ K S + P
Sbjct: 124 ASCLQRARELGARVRALKASAQDAGESCTP 153
Score = 30.1 bits (66), Expect = 2.3
Identities = 20/105 (19%), Positives = 28/105 (26%), Gaps = 5/105 (4%)
Query: 69 YVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQP 128
+ R P PP APP+ R PS +P G P +A +P
Sbjct: 10 FARRRPGPPRI--APPKLAC--RTPSPARPA-LRAPASATSGSRKRARPPAAPGRDQARP 64
Query: 129 EAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVSLDVKCEKNS 173
A + P P + KI +
Sbjct: 65 PARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPP 109
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 31.4 bits (70), Expect = 0.58
Identities = 10/63 (15%), Positives = 19/63 (30%)
Query: 71 DRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEA 130
+ P +P P N + +GP ++ A +PE+
Sbjct: 42 EGFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPES 101
Query: 131 MDK 133
+ K
Sbjct: 102 IRK 104
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding
protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A
1jh4_A
Length = 144
Score = 30.6 bits (68), Expect = 0.61
Identities = 7/55 (12%), Positives = 13/55 (23%)
Query: 73 PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQ 127
P A R P ++ + + H P + +P
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTAS 56
Score = 28.3 bits (62), Expect = 4.8
Identities = 13/72 (18%), Positives = 18/72 (25%), Gaps = 10/72 (13%)
Query: 78 APIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYG 137
P+ + P R K Y P A+P +
Sbjct: 1 GPLGSAAAATPAVRTVPQYK----------YAAGVRNPQQHLNAQPQVTMQQPAVHVQGQ 50
Query: 138 PPPPPPLLAPAP 149
P +LA AP
Sbjct: 51 EPLTASMLASAP 62
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer,
oxidoreductase, calcium- binding, methanol utilization,
PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP:
b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Length = 599
Score = 31.8 bits (72), Expect = 0.61
Identities = 9/89 (10%), Positives = 16/89 (17%), Gaps = 1/89 (1%)
Query: 69 YVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQP 128
+ P G H ++ K + G P
Sbjct: 370 RDPEYGTRMDHLAKDICPSAMGYHNQGH-DSYDPKRELFFMGINHICMDWEPFMLPYKAG 428
Query: 129 EAMDKSGYGPPPPPPLLAPAPDPWPNAVA 157
+ + P P + A
Sbjct: 429 QFFVGATLNMYPGPKGDRQNYEGLGQIKA 457
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 31.8 bits (70), Expect = 0.79
Identities = 16/104 (15%), Positives = 21/104 (20%), Gaps = 5/104 (4%)
Query: 49 QVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVY 108
+ + A V P N K+ V
Sbjct: 387 GAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYS----LNGKIRAVN 442
Query: 109 HGPPPPPPPLSAAKP-PPVQPEAMDKSGYGPPPPPPLLAPAPDP 151
P KP P +P + P P P P P
Sbjct: 443 VPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTP 486
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 31.9 bits (72), Expect = 0.80
Identities = 11/53 (20%), Positives = 14/53 (26%)
Query: 108 YHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
A + P A P P+ A AP +AD P
Sbjct: 92 PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144
Score = 30.7 bits (69), Expect = 1.7
Identities = 10/59 (16%), Positives = 14/59 (23%)
Query: 111 PPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVSLDVKC 169
P P P A + P A D A +V+ +K
Sbjct: 103 PAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLLLHVLVAHKLKK 161
Score = 28.4 bits (63), Expect = 8.5
Identities = 13/58 (22%), Positives = 15/58 (25%), Gaps = 8/58 (13%)
Query: 111 PPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVSLDVK 168
P P P + P P APAP A +I VK
Sbjct: 97 LAAKEEPAKEEAPAPTPAAS--------APAPAAAAPAPVAAAAPAAAAAEIADEPVK 146
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate
metabolism, kinase, membrane, nucleotide-binding,
nucleus; 2.60A {Saccharomyces cerevisiae} SCOP:
b.1.18.21 d.353.1.1
Length = 252
Score = 31.2 bits (69), Expect = 0.90
Identities = 13/121 (10%), Positives = 23/121 (19%), Gaps = 3/121 (2%)
Query: 26 PNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIV--AP 83
++ + R +A + D + + D P PP P
Sbjct: 91 NPTNEKIRSKEADSMRPPTSDRSSIALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIP 150
Query: 84 PRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPP-PVQPEAMDKSGYGPPPPP 142
+ + PP P D+
Sbjct: 151 AVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGAL 210
Query: 143 P 143
P
Sbjct: 211 P 211
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 30.6 bits (70), Expect = 1.2
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 73 PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAM 131
P PP P +P S F Y GP PP S A P + + +
Sbjct: 2 PQLPP-----APDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRL 55
Score = 28.3 bits (64), Expect = 6.9
Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 111 PPPP---PPPLSAAKPPPVQPE--AMDKSGYGPPPPPPLLAPAPDPWPNAV 156
PP P P + P V PE A G PP A AP + +
Sbjct: 5 PPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRL 55
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 29.9 bits (67), Expect = 1.3
Identities = 9/53 (16%), Positives = 12/53 (22%)
Query: 108 YHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
+H P + A YG P PAP +
Sbjct: 9 HHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61
Score = 29.9 bits (67), Expect = 1.4
Identities = 12/96 (12%), Positives = 15/96 (15%), Gaps = 23/96 (23%)
Query: 55 SSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPP 114
SS S+ P A P
Sbjct: 3 SSQHHHHHSSG--LVPRGSHMPQGGGYAEPAGRD---------------------YDYGQ 39
Query: 115 PPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPD 150
+P P + GYG L
Sbjct: 40 SGAPDYGQPAPGGYSGYGQGGYGSAGTSVTLQLDDG 75
Score = 29.1 bits (65), Expect = 2.2
Identities = 6/48 (12%), Positives = 9/48 (18%)
Query: 110 GPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVA 157
P + YG P P + +A
Sbjct: 19 SHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGT 66
Score = 27.5 bits (61), Expect = 8.2
Identities = 9/73 (12%), Positives = 16/73 (21%)
Query: 94 SHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWP 153
+ +H G V G P A + P P +
Sbjct: 2 GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61
Query: 154 NAVADTPKIVSLD 166
+ + + D
Sbjct: 62 GSAGTSVTLQLDD 74
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 30.7 bits (68), Expect = 1.5
Identities = 6/47 (12%), Positives = 11/47 (23%)
Query: 83 PPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPE 129
NG + + + PPP + P +
Sbjct: 3 AKAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQ 49
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 2.0
Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 37/125 (29%)
Query: 24 EVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAP 83
VP + + + ++ E +E V+ ET+ + + + A +
Sbjct: 733 FVPELKEFTAKLRKELV-ETSEVRKAVSIETALEHKVVNG-------NSADAAYAQVEIQ 784
Query: 84 PRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAM---DK------- 133
PR N +L P P + P + E + ++
Sbjct: 785 PRA--------------NIQL-----DFPELKPYKQVKQIAPAELEGLLDLERVIVVTGF 825
Query: 134 SGYGP 138
+ GP
Sbjct: 826 AEVGP 830
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 204
Score = 29.6 bits (65), Expect = 2.1
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 4 YKIVSTQLQITTGSQFAEKTEVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQS 63
YK + L + V+ + ++ R D + ++ ++
Sbjct: 106 YKEIRDALGSRKQAVSHAPVRAGCVNFDYSRTRRCVGRRDLRPANTTSTWEPPVSSDDEA 165
Query: 64 APKHGYVDRPPPPPAPIVAPPR-PHPNGRHPSHGKPQFN 101
+ + + PP A APPR P H + + N
Sbjct: 166 SSQSKPLATQPPVLALSNAPPRRVSPTRGRRRHTRLRRN 204
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A,
chloroplastic; photosynthesis, electron transfer,
membrane proteins, large complexes; HET: CL1 PQN BCR LMU
LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E*
2wsf_E* 2o01_E* 3lw5_E*
Length = 143
Score = 29.2 bits (64), Expect = 2.2
Identities = 14/48 (29%), Positives = 18/48 (37%)
Query: 97 KPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPL 144
P N V P P S++K P A D + P PPP+
Sbjct: 32 LPMRNAGSRLVVRAAEDPAPASSSSKDSPAAAAAPDGATATKPKPPPI 79
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 29.9 bits (66), Expect = 2.3
Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 7/72 (9%)
Query: 63 SAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAK 122
SA ++ PP + R P R + PPP P S++
Sbjct: 6 SAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTS-------STSRAPPPTNPDASSSS 58
Query: 123 PPPVQPEAMDKS 134
P K
Sbjct: 59 SSFAVPTIHFKE 70
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 2.4
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 254 QVQEVWDQARKLRCTWHDQYEKSV 277
QE ++A+K W+ + + V
Sbjct: 108 MEQEWREKAKKDLEEWNQRQSEQV 131
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 27.5 bits (61), Expect = 2.7
Identities = 7/31 (22%), Positives = 8/31 (25%)
Query: 112 PPPPPPLSAAKPPPVQPEAMDKSGYGPPPPP 142
Q + Y PPPPP
Sbjct: 47 DSGTGKELVLALYDYQESGDNAPSYSPPPPP 77
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex,
transferase,transcription; HET: BAX; 2.20A {Homo
sapiens}
Length = 405
Score = 29.8 bits (67), Expect = 2.8
Identities = 13/76 (17%), Positives = 20/76 (26%), Gaps = 10/76 (13%)
Query: 62 QSAPKHGYVDRPPPP------PAPIVAPPRPHPNGRHPSHGKPQFNHKLG----GVYHGP 111
+ A + Y P P I P R P + N +
Sbjct: 329 EQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLTEEEPDDKGDKKNQQQQQGNNHTNGTG 388
Query: 112 PPPPPPLSAAKPPPVQ 127
P S + PP++
Sbjct: 389 HPGNQDSSHTQGPPLK 404
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation,
repressor, transcript repressor; 3.10A {Saccharomyces
cerevisiae} SCOP: h.1.23.1
Length = 166
Score = 28.9 bits (63), Expect = 3.0
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 27 NVSKVEEQP-KQAQNREDAESTDQVASETSSDQESQQSA-PKHGYVDRPPPP 76
V VE++ KQ + D+ +T+ + S SQ + Y
Sbjct: 7 RVPIVEDRRVKQLDDITDSNTTEILTSVDVLGTHSQTGTQQSNMYTSTQKTE 58
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 29.5 bits (66), Expect = 3.2
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 12/67 (17%)
Query: 63 SAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSA-- 120
+GY D+P P+++P RP G + G P L
Sbjct: 167 HLYDYGYTDQPWLAADPVLSPLRPTDLGTVQT-GAWILP--------DQRPLSAELEGFL 217
Query: 121 -AKPPPV 126
A PPV
Sbjct: 218 RAGSPPV 224
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence,
DNA damage, genotoxin, cytotoxins, cell cycle,
apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP:
b.42.2.1 PDB: 2f2f_A
Length = 206
Score = 28.7 bits (63), Expect = 4.5
Identities = 10/55 (18%), Positives = 14/55 (25%)
Query: 89 NGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPP 143
N R + +P+ L P P PL + P P
Sbjct: 2 NQRMNDYSQPESQSDLAPKSSTIQPQPQPLLSKTPSMSLNLLSSSGPNRQVLPSE 56
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane
protein; HET: BOG; 1.15A {Komagataella pastoris} PDB:
2w1p_A*
Length = 279
Score = 28.9 bits (65), Expect = 4.6
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 124 PPVQPEAMDKSGYGPPPPPPLLAPAPDP 151
P ++ +A D P P + A P
Sbjct: 2 PDIENQAADGQAEIKPEDAPYITNAYKP 29
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein;
HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP:
a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Length = 509
Score = 29.1 bits (66), Expect = 4.8
Identities = 7/43 (16%), Positives = 8/43 (18%)
Query: 111 PPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWP 153
P P P V D + A W
Sbjct: 172 PESPLLPPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWS 214
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 29.0 bits (65), Expect = 4.9
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 12/63 (19%)
Query: 67 HGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLS---AAKP 123
GY D P P++AP +P + P P L+ A P
Sbjct: 188 FGYTDHPWVAADPVLAPLQPTDLDAV---------QTGAWILPDERPLSPELAAFLDAGP 238
Query: 124 PPV 126
PPV
Sbjct: 239 PPV 241
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein;
HTLV-II matrix protein, retroviral matrix protein; NMR
{Human t-lymphotropic virus 2} SCOP: a.61.1.2
Length = 137
Score = 27.9 bits (61), Expect = 4.9
Identities = 12/45 (26%), Positives = 12/45 (26%), Gaps = 9/45 (20%)
Query: 111 PPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNA 155
P P P P P PPP P P P P
Sbjct: 98 PAAPVPTPICPTTTPPPP---------PPPSPEAHVPPPYVEPTT 133
Score = 27.5 bits (60), Expect = 7.4
Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 21/59 (35%)
Query: 73 PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPP-VQPEA 130
P P AP+ P P PPPPPP A PPP V+P
Sbjct: 95 PSAPAAPVPTPICPTTTP--------------------PPPPPPSPEAHVPPPYVEPTT 133
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 29.2 bits (64), Expect = 5.4
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 110 GPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVSLD 166
P + P Q +D PPP L P P P + +V +
Sbjct: 4 AYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPP---PLVIPPERMLVPSE 57
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 28.6 bits (64), Expect = 6.0
Identities = 14/89 (15%), Positives = 22/89 (24%), Gaps = 1/89 (1%)
Query: 63 SAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAK 122
A ++ P P P +G P F+ ++ P P +
Sbjct: 180 RARQNFLGLLPDQPEEHREDPLAEWLTWTLEKYGGPAFDEEVVVGQWTIDPAPAAIRLDT 239
Query: 123 PPPVQPEAMDKSGYGPPPPPPLLAPAPDP 151
GP P L P+
Sbjct: 240 GLKTVGMRYVDYN-GPSVVPEWLHDEPER 267
>2wgk_A 3,6-diketocamphane 1,6 monooxygenase; camphor pathway,
oxidoreductase; 2.00A {Pseudomonas putida}
Length = 378
Score = 28.8 bits (64), Expect = 6.0
Identities = 6/76 (7%), Positives = 11/76 (14%), Gaps = 13/76 (17%)
Query: 75 PPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKS 134
P + P G P ++ +
Sbjct: 167 DAGYPEELEGEEGDEQHKLADFSPW----------GGKAPEIAVTGFSYNSPSMRLAGER 216
Query: 135 GYGP---PPPPPLLAP 147
+ P L
Sbjct: 217 NFKPVSIFSGLDALKR 232
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 28.2 bits (62), Expect = 6.2
Identities = 11/85 (12%), Positives = 16/85 (18%)
Query: 73 PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMD 132
P P P NG + + P S ++
Sbjct: 103 IPSQEHLNGPLPVPFTNGEIQKENSREALAEAALESPRPALVRSASSDTSEELNSQDSPP 162
Query: 133 KSGYGPPPPPPLLAPAPDPWPNAVA 157
K P P D +
Sbjct: 163 KQDSTAPSSTSSSDPILDFNISLAM 187
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein
transport; 1.95A {Saccharomyces cerevisiae}
Length = 392
Score = 28.6 bits (63), Expect = 6.2
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 10/62 (16%)
Query: 107 VYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADT-PKIVSL 165
+YH P + ++ K P +L P N I+ L
Sbjct: 324 IYHESVPAVVQV-----DSIKALDAIK----SPTWEKILEPYMQDVANKYDSLYRGIIPL 374
Query: 166 DV 167
DV
Sbjct: 375 DV 376
>3f1r_A FGF-20, fibroblast growth factor 20; beta-trefoil fold,
polymorphism, secreted, hormone; 2.50A {Homo sapiens}
Length = 211
Score = 28.3 bits (62), Expect = 6.7
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 412 CRYQCPDQCSSDSGDLHPQHT-----QLLEAHHSSSNVEATYGNNLPIDVFLHGGSGGQP 466
Y + G Q E +++ + + F+ G P
Sbjct: 116 GLYLGMNDKGELYGSEKLTSECIFREQFEENWYNTYSSNIYKHGDTGRRYFVALNKDGTP 175
Query: 467 RDERRVRRHRRDT 479
RD R +RH++ T
Sbjct: 176 RDGARSKRHQKFT 188
>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa
1090} SCOP: b.52.1.4 PDB: 2g6g_A
Length = 422
Score = 28.4 bits (62), Expect = 7.2
Identities = 7/39 (17%), Positives = 9/39 (23%)
Query: 111 PPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAP 149
P P S P D +G + P
Sbjct: 8 QTFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAVYTVVP 46
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine
oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN;
2.45A {Emericella nidulans}
Length = 797
Score = 28.8 bits (63), Expect = 7.5
Identities = 15/78 (19%), Positives = 19/78 (24%), Gaps = 15/78 (19%)
Query: 75 PPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKS 134
P R GR K Q +G P + P Q
Sbjct: 6 TKLDPSRDLVRQKSRGR-----KNQMRSLVGRSNQHITHQSRPYTNEYASPCQ------- 53
Query: 135 GYGPPPPPPLLAPAPDPW 152
PP + AP + W
Sbjct: 54 ---ITPPQEIKAPKENVW 68
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET:
TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A*
2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Length = 543
Score = 28.4 bits (64), Expect = 7.9
Identities = 6/61 (9%), Positives = 12/61 (19%), Gaps = 2/61 (3%)
Query: 98 PQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVA 157
+F + P K P P+ + P +
Sbjct: 183 QKFLGIVEQ--LKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGP 240
Query: 158 D 158
+
Sbjct: 241 N 241
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA
repair, DNA-binding; HET: DNA DOC DCP; 1.92A
{Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A*
3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Length = 786
Score = 28.2 bits (63), Expect = 9.4
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 145 LAPAPDPWPNAVADTPKIVSLDVKCEKNSMKVFISFDKPFFGIVF 189
L P PD P K VS+D++ ++ I + IV+
Sbjct: 143 LKPHPDYRPP-----LKWVSIDIETTRHGELYCIGLEGCGQRIVY 182
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 28.0 bits (63), Expect = 9.6
Identities = 5/50 (10%), Positives = 8/50 (16%), Gaps = 6/50 (12%)
Query: 111 PPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
+ + + P A A V P
Sbjct: 90 EQEEAKKEEKTETVSKEEKV------DAVAPNAPAAEAEAGPNRRVIAMP 133
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 28.2 bits (63), Expect = 9.7
Identities = 7/54 (12%), Positives = 11/54 (20%)
Query: 108 YHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPK 161
P PL + +++ P P P P
Sbjct: 6 EKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPD 59
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S
ribosomal protein L3; mitochondrial ribosome, large
ribosomal subunit, ribosomal R ribosome; 12.10A {Bos
taurus} PDB: 3iy9_D
Length = 175
Score = 27.2 bits (61), Expect = 9.7
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 91 RHPSHGKPQFNHKLGGVYHGPPPP 114
RH S P + GGV HGP P
Sbjct: 41 RHGSIRSPLWRG--GGVAHGPRGP 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.409
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,065,444
Number of extensions: 558184
Number of successful extensions: 3277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2494
Number of HSP's successfully gapped: 198
Length of query: 593
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 494
Effective length of database: 3,937,614
Effective search space: 1945181316
Effective search space used: 1945181316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.0 bits)