RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8304
(593 letters)
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS),
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 111
Score = 30.0 bits (67), Expect = 0.24
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 461 GSGGQPRDERRVRRHRRDTGEKEDIGVNKIIKVVS 495
G R + V RDT E+ + V+++ +
Sbjct: 72 SKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLR 106
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 30.1 bits (68), Expect = 0.25
Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 19/68 (27%)
Query: 110 GPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPP---------LLAPAPDP--WPNAVAD 158
G P AA P P P P + + W ++ D
Sbjct: 21 GGAQAPATTGAAGTAPTAP--------QPTAAPSIDVAPILDKAVKAKGEKLEWRTSIVD 72
Query: 159 TPKIVSLD 166
K + +D
Sbjct: 73 LMKALDID 80
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 29.8 bits (67), Expect = 0.40
Identities = 9/38 (23%), Positives = 11/38 (28%)
Query: 111 PPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPA 148
P P P+ P P PPP + P
Sbjct: 95 PSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPT 132
Score = 27.9 bits (62), Expect = 1.8
Identities = 12/45 (26%), Positives = 12/45 (26%), Gaps = 9/45 (20%)
Query: 111 PPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNA 155
P P P P P PPP P P P P
Sbjct: 98 PAAPVPTPICPTTTPPPP---------PPPSPEAHVPPPYVEPTT 133
Score = 27.9 bits (62), Expect = 2.0
Identities = 11/35 (31%), Positives = 12/35 (34%)
Query: 111 PPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLL 145
P P P + PPP PEA Y P
Sbjct: 103 PTPICPTTTPPPPPPPSPEAHVPPPYVEPTTTQCF 137
Score = 27.1 bits (60), Expect = 3.1
Identities = 15/59 (25%), Positives = 15/59 (25%), Gaps = 23/59 (38%)
Query: 71 DRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPE 129
P P P P PPPPPPP A PP E
Sbjct: 95 PSAPAAPVPTPICP-TTT----------------------PPPPPPPSPEAHVPPPYVE 130
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 126
Score = 27.0 bits (59), Expect = 2.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 454 IDVFLHGGSGGQPRDERRVRRHRRDTGEKEDIGVNKIIKVVS 495
V L G + + +++ RRDT EK + ++++VV
Sbjct: 64 KGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVE 105
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 27.1 bits (60), Expect = 2.9
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 110 GPPPPPPPLSAAKPPPVQPEAMDK 133
P P P S P + + K
Sbjct: 8 APAEPAAPKSGEAETPPKHPGVLK 31
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, C-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 127
Score = 27.3 bits (60), Expect = 3.0
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 463 GGQPRDERRVRRHRRDTGEKEDIGVNKIIKVVS 495
+ ++ RDT KE + ++K+ +
Sbjct: 76 TETTLENGLIQLRSRDTTMKEMMHISKLRDFLV 108
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 26.5 bits (58), Expect = 4.3
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 131 MDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVSLDVKCEKNSMKVFIS 179
M ++G PP P PA A PKI+ + VK K + +
Sbjct: 1 MAENGESSGPPRPSRGPAAAQGSAAAPAEPKIIKVTVKTPKEKEEFAVP 49
>d1vnsa_ a.111.1.3 (A:) Chloroperoxidase {Curvularia inaequalis
[TaxId: 38902]}
Length = 574
Score = 27.5 bits (60), Expect = 5.8
Identities = 18/110 (16%), Positives = 26/110 (23%), Gaps = 26/110 (23%)
Query: 48 DQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGV 107
+ VA + + A + GY P P HP P
Sbjct: 160 EDVADVFFALLNDPRGASQEGY---HPTPGRYKFDDEPTHPVVLIPV------------- 203
Query: 108 YHGPPPPPPPLSAAKPPPVQPE-------AMDKSGYGPPPPPPLLAPAPD 150
P P P +S + PP L + A +
Sbjct: 204 ---DPNNPNGPKMPFRQYHAPFYGKTTKRFATQSEHFLADPPGLRSNADE 250
>d1vz6a_ d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithine
acetyltransferase) {Streptomyces clavuligerus [TaxId:
1901]}
Length = 383
Score = 27.0 bits (59), Expect = 6.8
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 191 KGHYSNVNCVHLPAGLGRTSANFEIGIHACGTSG 224
+ + VN + + N+ A G
Sbjct: 274 RVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCS 307
>d1wsaa_ c.88.1.1 (A:) Asparaginase type II {Wolinella succinogenes
[TaxId: 844]}
Length = 328
Score = 27.0 bits (59), Expect = 7.1
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 82 APPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPP 141
RPH K + ++ +Y P ++AA + G G P P
Sbjct: 194 QSVRPHTLASEFDISKIEELPRVDILYAHPDDTDVLVNAALQAGAKGIIHAGMGNGNPFP 253
>d1t6ja_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Fungi
(Rhodosporidium toruloides) [TaxId: 5286]}
Length = 678
Score = 26.9 bits (59), Expect = 9.5
Identities = 11/48 (22%), Positives = 16/48 (33%)
Query: 430 QHTQLLEAHHSSSNVEATYGNNLPIDVFLHGGSGGQPRDERRVRRHRR 477
LL ++ VEA G+ FLH + P R+
Sbjct: 249 HMLSLLSQSLTAMTVEAMVGHAGSFHPFLHDVTRPHPTQIEVAGNIRK 296
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.409
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,217,611
Number of extensions: 108050
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 18
Length of query: 593
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 503
Effective length of database: 1,171,896
Effective search space: 589463688
Effective search space used: 589463688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.5 bits)