Query psy8308
Match_columns 311
No_of_seqs 123 out of 1198
Neff 9.5
Searched_HMMs 29240
Date Sat Aug 17 00:22:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 100.0 6.6E-39 2.3E-43 304.6 25.6 268 19-308 21-293 (539)
2 3r44_A Fatty acyl COA syntheta 100.0 9.2E-39 3.2E-43 302.2 23.8 263 19-308 12-279 (517)
3 3ivr_A Putative long-chain-fat 100.0 2.2E-38 7.4E-43 299.1 26.1 262 20-305 3-266 (509)
4 3g7s_A Long-chain-fatty-acid-- 100.0 1.8E-38 6.2E-43 302.3 22.5 267 19-309 15-290 (549)
5 3o83_A Peptide arylation enzym 100.0 5.2E-38 1.8E-42 298.8 23.7 265 19-307 26-301 (544)
6 1t5h_X 4-chlorobenzoyl COA lig 100.0 3.1E-37 1.1E-41 290.9 28.1 256 23-305 2-262 (504)
7 4gr5_A Non-ribosomal peptide s 100.0 2.1E-37 7E-42 296.2 25.7 249 22-306 74-322 (570)
8 4dg8_A PA1221; ANL superfamily 100.0 3.3E-37 1.1E-41 297.2 27.0 249 18-304 22-270 (620)
9 3ni2_A 4-coumarate:COA ligase; 100.0 5E-38 1.7E-42 298.4 20.8 267 20-308 19-292 (536)
10 3fce_A D-alanine--poly(phospho 100.0 1E-37 3.5E-42 294.7 22.7 254 24-308 2-256 (512)
11 3t5a_A Long-chain-fatty-acid-- 100.0 9E-38 3.1E-42 292.5 21.4 264 20-304 21-298 (480)
12 1v25_A Long-chain-fatty-acid-C 100.0 5.2E-37 1.8E-41 291.7 25.2 268 23-309 18-289 (541)
13 3kxw_A Saframycin MX1 syntheta 100.0 6.3E-37 2.2E-41 293.9 23.6 267 19-305 7-278 (590)
14 3rix_A Luciferase, luciferin 4 100.0 1.2E-36 4.1E-41 289.8 25.0 265 20-308 17-302 (550)
15 3etc_A AMP-binding protein; ad 100.0 2.5E-36 8.7E-41 289.1 27.1 263 24-304 57-333 (580)
16 3e7w_A D-alanine--poly(phospho 100.0 9.8E-37 3.4E-41 287.9 22.6 252 24-307 2-254 (511)
17 1ry2_A Acetyl-coenzyme A synth 100.0 5.3E-37 1.8E-41 298.0 21.1 268 24-306 83-375 (663)
18 3ipl_A 2-succinylbenzoate--COA 100.0 1.6E-36 5.3E-41 285.8 23.6 256 24-307 2-271 (501)
19 1amu_A GRSA, gramicidin synthe 100.0 3E-36 1E-40 287.7 25.8 250 22-303 38-289 (563)
20 1pg4_A Acetyl-COA synthetase; 100.0 2.3E-36 7.9E-41 293.1 25.3 269 24-306 77-369 (652)
21 3l8c_A D-alanine--poly(phospho 100.0 8.1E-36 2.8E-40 282.2 26.0 251 23-306 4-257 (521)
22 2d1s_A Luciferase, luciferin 4 100.0 8.4E-36 2.9E-40 283.8 26.2 262 23-306 25-302 (548)
23 3rg2_A Enterobactin synthase c 100.0 3.9E-36 1.3E-40 289.9 21.8 263 18-307 22-294 (617)
24 2v7b_A Benzoate-coenzyme A lig 100.0 3.4E-36 1.2E-40 285.4 20.4 256 23-306 24-293 (529)
25 4fuq_A Malonyl COA synthetase; 100.0 2E-36 6.8E-41 285.3 18.0 251 27-307 4-262 (503)
26 3tsy_A Fusion protein 4-coumar 100.0 1.3E-35 4.6E-40 299.9 24.3 268 22-309 60-340 (979)
27 3c5e_A Acyl-coenzyme A synthet 100.0 2E-35 6.9E-40 282.3 21.9 266 23-304 38-314 (570)
28 2vsq_A Surfactin synthetase su 100.0 1.3E-34 4.4E-39 299.9 26.1 249 23-304 464-714 (1304)
29 3ite_A SIDN siderophore synthe 100.0 1.6E-34 5.3E-39 275.9 23.9 264 18-303 15-288 (562)
30 3gqw_A Fatty acid AMP ligase; 100.0 2.3E-34 7.9E-39 275.2 25.0 256 22-304 20-287 (576)
31 3nyq_A Malonyl-COA ligase; A/B 100.0 7.5E-35 2.5E-39 274.6 17.6 240 22-305 21-261 (505)
32 4gs5_A Acyl-COA synthetase (AM 99.7 1.7E-17 5.8E-22 149.4 7.2 107 192-306 36-142 (358)
33 3qov_A Phenylacetate-coenzyme 99.6 1.8E-15 6E-20 139.7 12.1 115 191-310 83-201 (436)
34 2y27_A Phenylacetate-coenzyme 99.6 3.9E-15 1.3E-19 137.4 12.9 115 190-309 87-204 (437)
35 2y4o_A Phenylacetate-coenzyme 99.6 4.5E-15 1.5E-19 137.2 12.7 115 190-309 89-206 (443)
36 3hgu_A EHPF; phenazine, antibi 99.5 1.3E-14 4.6E-19 130.8 9.6 110 191-306 89-224 (369)
37 2y27_A Phenylacetate-coenzyme 86.5 7.5 0.00026 34.7 11.8 81 55-145 108-190 (437)
38 2y4o_A Phenylacetate-coenzyme 85.3 8.8 0.0003 34.3 11.6 81 55-145 110-192 (443)
39 3qov_A Phenylacetate-coenzyme 79.8 23 0.00079 31.4 12.1 81 55-145 104-186 (436)
40 3ipl_A 2-succinylbenzoate--COA 79.8 20 0.00069 32.5 11.9 97 36-145 161-259 (501)
41 1mdb_A 2,3-dihydroxybenzoate-A 69.2 64 0.0022 29.5 12.5 78 55-145 200-280 (539)
42 4b2g_A GH3-1 auxin conjugating 67.8 1.3 4.4E-05 41.9 0.5 30 191-220 97-127 (609)
43 3o83_A Peptide arylation enzym 67.3 57 0.002 29.8 11.8 97 36-145 189-289 (544)
44 3fce_A D-alanine--poly(phospho 61.3 33 0.0011 31.2 8.8 79 55-145 162-243 (512)
45 3e7w_A D-alanine--poly(phospho 61.2 39 0.0013 30.7 9.3 98 36-145 141-242 (511)
46 3ivr_A Putative long-chain-fat 58.8 82 0.0028 28.4 11.0 77 55-145 178-256 (509)
47 3r44_A Fatty acyl COA syntheta 57.3 96 0.0033 28.1 11.2 77 55-145 188-266 (517)
48 4epl_A Jasmonic acid-amido syn 56.0 4 0.00014 38.3 1.5 30 191-220 96-126 (581)
49 4eql_A 4-substituted benzoates 55.4 2.8 9.7E-05 39.4 0.4 30 191-220 91-121 (581)
50 3g7s_A Long-chain-fatty-acid-- 51.6 63 0.0022 29.6 9.0 78 55-145 198-276 (549)
51 3kxw_A Saframycin MX1 syntheta 51.4 52 0.0018 30.4 8.5 98 36-145 165-268 (590)
52 1v25_A Long-chain-fatty-acid-C 50.6 71 0.0024 29.2 9.2 60 85-145 215-275 (541)
53 3rg2_A Enterobactin synthase c 49.6 1.6E+02 0.0056 27.3 12.7 96 37-145 183-282 (617)
54 1t5h_X 4-chlorobenzoyl COA lig 48.0 68 0.0023 28.9 8.6 97 36-145 151-252 (504)
55 1amu_A GRSA, gramicidin synthe 46.7 70 0.0024 29.5 8.5 78 56-145 201-281 (563)
56 3rix_A Luciferase, luciferin 4 42.9 1E+02 0.0035 28.1 9.0 81 55-145 208-289 (550)
57 2d1s_A Luciferase, luciferin 4 42.1 1.1E+02 0.0037 28.0 9.0 97 38-145 192-291 (548)
58 3nyq_A Malonyl-COA ligase; A/B 41.3 1.6E+02 0.0055 26.5 10.0 96 36-145 153-251 (505)
59 2v7b_A Benzoate-coenzyme A lig 38.9 87 0.003 28.4 7.8 60 85-145 221-282 (529)
60 3hgu_A EHPF; phenazine, antibi 35.1 78 0.0027 27.1 6.5 79 56-145 110-213 (369)
61 4gs5_A Acyl-COA synthetase (AM 33.4 1E+02 0.0035 26.4 6.9 75 55-144 55-130 (358)
62 4h1h_A LMO1638 protein; MCCF-l 32.5 1.1E+02 0.0037 26.2 6.8 61 83-144 6-85 (327)
63 4dg8_A PA1221; ANL superfamily 32.2 1.4E+02 0.0048 27.9 8.1 60 85-145 200-261 (620)
64 2trc_P Phosducin, MEKA, PP33; 31.5 5.1 0.00017 32.3 -1.8 18 201-219 3-20 (217)
65 3t5a_A Long-chain-fatty-acid-- 28.5 1.2E+02 0.004 27.0 6.7 82 55-143 201-288 (480)
66 3gqw_A Fatty acid AMP ligase; 28.3 1.8E+02 0.0062 26.4 8.1 98 37-145 175-278 (576)
67 3c5e_A Acyl-coenzyme A synthet 27.5 3E+02 0.01 25.2 9.5 60 85-145 243-305 (570)
68 3l8c_A D-alanine--poly(phospho 27.0 3E+02 0.01 24.6 9.3 100 36-145 143-246 (521)
69 4fuq_A Malonyl COA synthetase; 25.9 2.3E+02 0.0079 25.3 8.3 94 36-144 153-249 (503)
70 3etc_A AMP-binding protein; ad 25.7 2.4E+02 0.0081 25.9 8.4 60 85-145 262-324 (580)
71 3tla_A MCCF; serine protease, 23.8 1.6E+02 0.0056 25.6 6.4 60 84-144 38-116 (371)
72 1pg4_A Acetyl-COA synthetase; 23.3 3.8E+02 0.013 25.0 9.4 60 85-145 294-358 (652)
73 3sr3_A Microcin immunity prote 22.6 2.2E+02 0.0075 24.4 6.9 60 84-144 8-86 (336)
74 3dzz_A Putative pyridoxal 5'-p 22.0 1.6E+02 0.0053 25.0 6.1 55 87-145 107-168 (391)
75 3acd_A Hypoxanthine-guanine ph 21.8 1.9E+02 0.0064 22.2 5.8 44 56-109 13-56 (181)
76 1eg5_A Aminotransferase; PLP-d 21.2 1.3E+02 0.0046 25.3 5.4 56 88-145 88-147 (384)
77 4e5s_A MCCFLIKE protein (BA_56 20.4 2.4E+02 0.0081 24.1 6.7 60 84-144 7-85 (331)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=6.6e-39 Score=304.65 Aligned_cols=268 Identities=18% Similarity=0.184 Sum_probs=192.6
Q ss_pred hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308 19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA 98 (311)
Q Consensus 19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~ 98 (311)
.++..++.++|.++++++||++|+.+.+. ++||+||+++++++|++|++. |+++||+ |+++++
T Consensus 21 ~~~~~tl~~~l~~~a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~ 83 (539)
T 1mdb_A 21 CWAGETFGDLLRDRAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKL--------GIQQKDR-VVVQLP 83 (539)
T ss_dssp SSCSCCHHHHHHHHHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHH--------TCCTTCE-EEECCC
T ss_pred cccCCCHHHHHHHHHHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcC
Confidence 34557899999999999999999987542 679999999999999999864 6778886 999999
Q ss_pred CChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhh----hhhhhcccccccchhhhhhhcccCC
Q psy8308 99 PSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC----ENLAYKGRTVLSLPQLRLLSASLSH 174 (311)
Q Consensus 99 n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
|+++|+++++||+++|+++||+||.++.+++.+++++++++++|++..... ............+..+.........
T Consensus 84 ~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (539)
T 1mdb_A 84 NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEF 163 (539)
T ss_dssp SSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTS
T ss_pred CcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccch
Confidence 999999999999999999999999999999999999999999999764211 0000000000000000000000000
Q ss_pred CCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHH
Q psy8308 175 NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIW 254 (311)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (311)
.................++|+++|+|||||||.||||++||+++...+......+.+.+.++.. ...++.|.++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l---~~~p~~h~~~~~~ 240 (539)
T 1mdb_A 164 LPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYL---AALPMAHNYPLSS 240 (539)
T ss_dssp EEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEE---ECSCTTSHHHHHS
T ss_pred hhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEE---EeecccccchhhH
Confidence 0000000000011234678999999999999999999999999988877666667777777643 3344444433221
Q ss_pred -HhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308 255 -GPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT 308 (311)
Q Consensus 255 -~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~ 308 (311)
..+..+..|+++++.+. +++..+++.|+++++|++.++|+++..|+++.+..
T Consensus 241 ~~~~~~l~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 293 (539)
T 1mdb_A 241 PGVLGVLYAGGRVVLSPS--PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR 293 (539)
T ss_dssp SHHHHHHHTTCEEEECSS--SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCEEEECCC--CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc
Confidence 22333345778887764 47999999999999999999999999999887644
No 2
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=9.2e-39 Score=302.18 Aligned_cols=263 Identities=22% Similarity=0.228 Sum_probs=190.6
Q ss_pred hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308 19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA 98 (311)
Q Consensus 19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~ 98 (311)
.....++.++|+++++++|+++|+++.+.+ +++||+||+++++++|++|++. |+++||+ |+++++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~------~~~Ty~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~ 76 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEPSTD------VRMTYAQMNALANRCADVLTAL--------GIAKGDR-VALLMP 76 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECC
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeCCcC------ceeeHHHHHHHHHHHHHHHHHc--------CCCCcCE-EEEEcC
Confidence 445679999999999999999999976432 2679999999999999999863 7788886 999999
Q ss_pred CChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcc--c---ccccchhhhhhhcccC
Q psy8308 99 PSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG--R---TVLSLPQLRLLSASLS 173 (311)
Q Consensus 99 n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~ 173 (311)
|+++|++++|||+++|+++||+||.++.+++.+++++++++++|++............ . .+..+...........
T Consensus 77 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (517)
T 3r44_A 77 NSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLR 156 (517)
T ss_dssp SSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhh
Confidence 9999999999999999999999999999999999999999999997654322111100 0 0000000000000000
Q ss_pred CCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHH
Q psy8308 174 HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEI 253 (311)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
.... ........++|+++|+|||||||.||||++||+++..........+.+.+.++... ..+++|..+..
T Consensus 157 ~~~~------~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~---~~p~~~~~~~~ 227 (517)
T 3r44_A 157 SAAA------DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLL---PLPMFHVAALT 227 (517)
T ss_dssp HCCC------CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEE---CSCTTSHHHHH
T ss_pred ccCc------CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEE---eCchHHHHHHH
Confidence 0000 01112346789999999999999999999999999988877777778888777533 23333333322
Q ss_pred HHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308 254 WGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT 308 (311)
Q Consensus 254 ~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~ 308 (311)
. .+.....|+++++.+. +++..+++.|+++++|++.++|+++..|+++.+..
T Consensus 228 ~-~~~~~~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 279 (517)
T 3r44_A 228 T-VIFSAMRGVTLISMPQ--FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA 279 (517)
T ss_dssp H-HHHHHHHTCEEEECSS--CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH
T ss_pred H-HHHHHhcCeEEEEeCC--CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc
Confidence 1 1222224777777664 58999999999999999999999999999876644
No 3
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.2e-38 Score=299.07 Aligned_cols=262 Identities=19% Similarity=0.208 Sum_probs=187.9
Q ss_pred hhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC
Q psy8308 20 YKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP 99 (311)
Q Consensus 20 ~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n 99 (311)
++..++.++|+++++++||++|+.+.+. ++||+||+++++++|++|++. |+++||+ |+++++|
T Consensus 3 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~~ 65 (509)
T 3ivr_A 3 LHDFTLADVYRRNAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRD--------GVHTGDR-VAILSQN 65 (509)
T ss_dssp TTCCCHHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCS
T ss_pred CCcCCHHHHHHHHHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCC
Confidence 3557899999999999999999997543 679999999999999999863 7788886 9999999
Q ss_pred ChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc-cCCCCCC
Q psy8308 100 SSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS-LSHNNIP 178 (311)
Q Consensus 100 ~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 178 (311)
+++|+++++|++++|+++||+||.++.+++.+++++++++++|++........... .....+......... .......
T Consensus 66 ~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 144 (509)
T 3ivr_A 66 CSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGSGPFAPFK 144 (509)
T ss_dssp CHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCCSSCEEGG
T ss_pred CHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCCcChhhHh
Confidence 99999999999999999999999999999999999999999999765432211111 000001111000000 0000000
Q ss_pred C-CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhh
Q psy8308 179 G-ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPL 257 (311)
Q Consensus 179 ~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
. ............++|+++|+|||||||.||||++||+++..........+.+.+.++.... .+++|..+......
T Consensus 145 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~---~p~~~~~g~~~~~~ 221 (509)
T 3ivr_A 145 DLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGM---LPLFHVTGLGLMLT 221 (509)
T ss_dssp GTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEEC---SCTTSHHHHHHHHH
T ss_pred hccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEe---CCCcchhHHHHHHH
Confidence 0 0000111223567899999999999999999999999999888777777888888875433 33333333222111
Q ss_pred HhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308 258 LSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL 305 (311)
Q Consensus 258 ~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~ 305 (311)
.....|..++.. .+++..+++.|+++++|++..+|+++..|+++.
T Consensus 222 ~~~~~g~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 266 (509)
T 3ivr_A 222 LQQAGGASVIAA---KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA 266 (509)
T ss_dssp HHHHTCEEEECS---SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC
T ss_pred HHHhCCcEEEec---ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc
Confidence 122234455554 358999999999999999999999999999865
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.8e-38 Score=302.25 Aligned_cols=267 Identities=20% Similarity=0.254 Sum_probs=194.6
Q ss_pred hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308 19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA 98 (311)
Q Consensus 19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~ 98 (311)
.++..++.++|.++++++||++|+++.+.......++++||+||+++++++|++|++. |+++||+ |+++++
T Consensus 15 ~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~ 85 (549)
T 3g7s_A 15 YYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRK--------GVRKGEH-VGVCIP 85 (549)
T ss_dssp CCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECC
T ss_pred CcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECC
Confidence 3456789999999999999999999876322112235789999999999999999863 7788896 999999
Q ss_pred CChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhccc----ccccch----hhhhhhc
Q psy8308 99 PSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGR----TVLSLP----QLRLLSA 170 (311)
Q Consensus 99 n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~ 170 (311)
|+++|+++++|++++|+++||+||.++.+++.+++++++++++|++............. .+.... .+.....
T Consensus 86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (549)
T 3g7s_A 86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMD 165 (549)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCcCHHHHHh
Confidence 99999999999999999999999999999999999999999999976543221111100 000000 0000000
Q ss_pred ccCCCCCCCCcccCCCCCCCC-CCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhh
Q psy8308 171 SLSHNNIPGESMLHSDNNNEQ-SNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDA 249 (311)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~-~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (311)
.. .. ........ ++|+++|+|||||||.||||++||+++..........+.+.+.++.. ...+++|.
T Consensus 166 ~~---~~------~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~---~~~p~~~~ 233 (549)
T 3g7s_A 166 SG---SE------DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIV---GCMPMFHS 233 (549)
T ss_dssp HS---CS------CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEE---CCSCTTSH
T ss_pred cC---cc------ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEE---EeCcHHHH
Confidence 00 00 00111122 38999999999999999999999999998877777777788777643 33444444
Q ss_pred HHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308 250 VSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG 309 (311)
Q Consensus 250 ~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~ 309 (311)
.+..+ .+.....|+.+++... +++..+++.|+++++|+++++|+++..|+++.+..+
T Consensus 234 ~~~~~-~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 290 (549)
T 3g7s_A 234 AEFGL-VNLMVTVGNEYVVMGM--FNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSN 290 (549)
T ss_dssp HHHHH-HTTHHHHCCEEEEESS--CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSC
T ss_pred HHHHH-HHHHHhcCceEEEcCC--CCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhc
Confidence 33222 2333334777777653 589999999999999999999999999999876543
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=5.2e-38 Score=298.77 Aligned_cols=265 Identities=21% Similarity=0.249 Sum_probs=190.8
Q ss_pred hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308 19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA 98 (311)
Q Consensus 19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~ 98 (311)
.|...++.++|.++++++||++|+++.+. ++||+||+++++++|++|++. |+++||+ |+++++
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~ 88 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEK--------GLGKGDT-ALVQLP 88 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEECCC
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHC--------CCCCCCE-EEEECC
Confidence 45667899999999999999999997643 679999999999999999864 7788886 999999
Q ss_pred CChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh----hhhhcccccccchhhhhhhcccC-
Q psy8308 99 PSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE----NLAYKGRTVLSLPQLRLLSASLS- 173 (311)
Q Consensus 99 n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~- 173 (311)
|+++|+++++||+++|+++||+++.++.+++.+++++++++++|++...... ..............+........
T Consensus 89 n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (544)
T 3o83_A 89 NVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATD 168 (544)
T ss_dssp SSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTS
T ss_pred CCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccc
Confidence 9999999999999999999999999999999999999999999997643210 00000000000000000000000
Q ss_pred -----CCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhh
Q psy8308 174 -----HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVD 248 (311)
Q Consensus 174 -----~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (311)
........ ........++|+++|+|||||||.||||++||+++...+......+.+.+.++... .+++.|
T Consensus 169 ~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~---~~p~~h 243 (544)
T 3o83_A 169 FGLLDWIETPAET--FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLC---ALPAPH 243 (544)
T ss_dssp EEHHHHHHSCCSS--CCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEE---CSCTTS
T ss_pred cchhhhhhccccc--ccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEE---ecCcce
Confidence 00000000 01112345789999999999999999999999999988877777778888776533 334334
Q ss_pred hHHHHH-HhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308 249 AVSEIW-GPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM 307 (311)
Q Consensus 249 ~~~~~~-~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~ 307 (311)
.+...+ ..+.....|+++++... +++..+++.|+++++|++.++|+++.+|+++.+.
T Consensus 244 ~~~~~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 301 (544)
T 3o83_A 244 NFMLSSPGALGVLHAGGCVVMAPN--PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ 301 (544)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSS--CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT
T ss_pred EeecchHHHHHHHHcCCEEEECCC--CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh
Confidence 333221 12223334778877764 4799999999999999999999999999987653
No 6
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=3.1e-37 Score=290.88 Aligned_cols=256 Identities=16% Similarity=0.218 Sum_probs=182.7
Q ss_pred hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308 23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG 102 (311)
Q Consensus 23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e 102 (311)
.++.++|+++++++||++|+.+...+ +++||+||+++++++|++|++. |+++||+ |+++++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~--------Gv~~gd~-V~i~~~~~~~ 66 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHAD--------GLRPQQR-VAVVAPNSAD 66 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTT------EEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCSCHH
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCC------ceeEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCHH
Confidence 46889999999999999999875321 2679999999999999999863 7788886 9999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEe--cCchhhhhhhhc-ccccccchhhhhhhcccCCCCCCC
Q psy8308 103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIA--ENEQACENLAYK-GRTVLSLPQLRLLSASLSHNNIPG 179 (311)
Q Consensus 103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
|+++++|++++|+++||+||.++.+++.+++++++++++++ +........... ...+..++.+. ... .....
T Consensus 67 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~ 141 (504)
T 1t5h_X 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLV---RDG--EPYSY 141 (504)
T ss_dssp HHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEEGGGTE---ETT--EECCC
T ss_pred HHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEEecchh---hcC--ccccc
Confidence 99999999999999999999999999999999999999999 544322110111 11111111100 000 00000
Q ss_pred CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCC--CCCCccceeecchhhhhhHHHHHHhh
Q psy8308 180 ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPY--SPSERVGAFKTALTFVDAVSEIWGPL 257 (311)
Q Consensus 180 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
.. ........++|+++|+|||||||.||||++||+++..........+.+ .+.++. +..+++.|..+..+..+
T Consensus 142 ~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~---l~~~p~~~~~g~~~~~~ 216 (504)
T 1t5h_X 142 GP--PIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV---LGLMPLYHVVGFFAVLV 216 (504)
T ss_dssp SC--CCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEE---EECSCTTSHHHHTTTHH
T ss_pred CC--ccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceE---EeecchhhcchHHHHHH
Confidence 00 001123457899999999999999999999999998877666555666 555543 33344444443322223
Q ss_pred HhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308 258 LSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL 305 (311)
Q Consensus 258 ~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~ 305 (311)
.....|+++++.+. ++|..+++.|+++++|+++++|+++..|+++.
T Consensus 217 ~~l~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 262 (504)
T 1t5h_X 217 AALALDGTYVVVEE--FRPVDALQLVQQEQVTSLFATPTHLDALAAAA 262 (504)
T ss_dssp HHHHTTCEEEECSS--CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHH
T ss_pred HHHHcCceEEeCCC--CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhh
Confidence 33345778887764 47999999999999999999999999999876
No 7
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.1e-37 Score=296.25 Aligned_cols=249 Identities=25% Similarity=0.324 Sum_probs=184.0
Q ss_pred hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308 22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS 101 (311)
Q Consensus 22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~ 101 (311)
..++.++|+++++++||++|+.+.+. ++||+||+++++++|++|++. |+++||+ |+++++|++
T Consensus 74 ~~~l~~~l~~~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~n~~ 136 (570)
T 4gr5_A 74 GACVHELFEAQAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGL--------GVAPGTL-VGVHLERGF 136 (570)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCSSH
T ss_pred cCCHHHHHHHHHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCCH
Confidence 45899999999999999999997543 679999999999999999863 7788886 999999999
Q ss_pred hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCc
Q psy8308 102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGES 181 (311)
Q Consensus 102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
+|+++++||+++|+++||+||.++.+++.+++++++++++|++........ . ...+....... ...
T Consensus 137 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~---~-----~~~~~~~~~~~--~~~---- 202 (570)
T 4gr5_A 137 DMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT---G-----TTTLYVEDEAA--SDA---- 202 (570)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC---S-----SEEEECCC------------
T ss_pred HHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc---C-----Ccceeeecccc--ccc----
Confidence 999999999999999999999999999999999999999999764321110 0 00000000000 000
Q ss_pred ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhc
Q psy8308 182 MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR 261 (311)
Q Consensus 182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
..........++|+++|+|||||||.||||++||+++...... .....+.+.++...+ .++.|......+ +....
T Consensus 203 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~-~p~~~~~~~~~~---~~~l~ 277 (570)
T 4gr5_A 203 PAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQC-SPVSWDAFGLEL---FGALL 277 (570)
T ss_dssp -CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEEC-SCTTSSTHHHHH---HHHHT
T ss_pred cccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEe-cCccHHHHHHHH---HHHHh
Confidence 0011112346789999999999999999999999998755432 223345666654332 233332222222 33344
Q ss_pred CCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308 262 CGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK 306 (311)
Q Consensus 262 ~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~ 306 (311)
.|+++++.....+++..+++.|+++++|++.++|+++..|+++.+
T Consensus 278 ~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 322 (570)
T 4gr5_A 278 FGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP 322 (570)
T ss_dssp TTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG
T ss_pred cCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch
Confidence 577777766556789999999999999999999999999987643
No 8
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=3.3e-37 Score=297.15 Aligned_cols=249 Identities=22% Similarity=0.297 Sum_probs=187.9
Q ss_pred hhhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEe
Q psy8308 18 KIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSL 97 (311)
Q Consensus 18 ~~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~ 97 (311)
..+...++.++|.++++++||++|+.+.+. ++||+||+++++++|++|++. |+++||+ |++++
T Consensus 22 ~~~~~~tl~~~~~~~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~--------Gv~~g~~-V~i~~ 84 (620)
T 4dg8_A 22 DLYAHPTVVARFSEMAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEH--------YPQPGVC-LGVYG 84 (620)
T ss_dssp SGGGSCCHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHH--------CCSSCCE-EEEES
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEe
Confidence 345667999999999999999999997653 679999999999999999865 6778886 99999
Q ss_pred CCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCC
Q psy8308 98 APSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177 (311)
Q Consensus 98 ~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
+|+++|++++||++++|+++||+||.++.+++.+++++++++++++......... ...... . ... . ..
T Consensus 85 ~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~-----~~~~~~-~---~~~-~--~~ 152 (620)
T 4dg8_A 85 EYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN-----GLPCVP-V---RHL-P--AA 152 (620)
T ss_dssp SSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT-----TSCEEE-G---GGC-C--CC
T ss_pred CCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc-----CCceee-e---ccC-C--cC
Confidence 9999999999999999999999999999999999999999999996543221100 000000 0 000 0 00
Q ss_pred CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhh
Q psy8308 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPL 257 (311)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
.. ........++|+++|+|||||||.||||+++|+++.+.+.. ...+.+.+.++... ..++.|..+...++.++
T Consensus 153 ~~----~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~-~~p~~~~~~~~~~~~~l 226 (620)
T 4dg8_A 153 PA----SVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLV-NSPLSFDAATLEIWGAL 226 (620)
T ss_dssp CC----CSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEE-CSCTTSTHHHHHHHHHH
T ss_pred Cc----cccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEE-ECccCHHHHHHHHHHHH
Confidence 00 01112245789999999999999999999999998765433 33456677776543 34444544444444444
Q ss_pred HhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308 258 LSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF 304 (311)
Q Consensus 258 ~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~ 304 (311)
..|+++++.+...++|..+++.|+++++|++.++|+++..|++.
T Consensus 227 ---~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~ 270 (620)
T 4dg8_A 227 ---LNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDL 270 (620)
T ss_dssp ---TTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH
T ss_pred ---hcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc
Confidence 44777777654456899999999999999999999999998864
No 9
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=5e-38 Score=298.39 Aligned_cols=267 Identities=20% Similarity=0.266 Sum_probs=188.8
Q ss_pred hhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC
Q psy8308 20 YKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP 99 (311)
Q Consensus 20 ~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n 99 (311)
....++.++|.++++++||++|+++...+ +++||+||+++++++|++|++. |+++||+ |+++++|
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~~ 83 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKI--------GIQQGDV-IMLFLPS 83 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCS
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCC
Confidence 33468999999999999999999975432 2679999999999999999864 7788886 9999999
Q ss_pred ChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc---ccccccchhhhhhhcccCCCC
Q psy8308 100 SSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK---GRTVLSLPQLRLLSASLSHNN 176 (311)
Q Consensus 100 ~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+++|+++++||+++|+++||+||.++.+++.+++++++++++|++........... ...+..++... ........
T Consensus 84 ~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 161 (536)
T 3ni2_A 84 SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAP--DGCLHFSE 161 (536)
T ss_dssp SHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCC--TTCEETHH
T ss_pred cHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCC--CCccCHHH
Confidence 99999999999999999999999999999999999999999999765332211110 11111010000 00000000
Q ss_pred CCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHh----hcCCCCCCccceeecchhhhhhHHH
Q psy8308 177 IPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA----TFPYSPSERVGAFKTALTFVDAVSE 252 (311)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (311)
...............++|+++|+|||||||.||||++||+++...+..... .+.+.+.++.. ..++++|..+.
T Consensus 162 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l---~~~p~~h~~~~ 238 (536)
T 3ni2_A 162 LTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVIL---CVLPMFHIYAL 238 (536)
T ss_dssp HHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEE---ECSCTTSHHHH
T ss_pred HhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEE---EecChHHHHHH
Confidence 000000011122346789999999999999999999999999877654432 23455666543 33444444433
Q ss_pred HHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308 253 IWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT 308 (311)
Q Consensus 253 ~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~ 308 (311)
....+.....|+++++.+. +++..+++.|+++++|++.++|+++..|+++.+..
T Consensus 239 ~~~~~~~l~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 292 (536)
T 3ni2_A 239 NSIMLCGLRVGAPILIMPK--FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLD 292 (536)
T ss_dssp HHTHHHHHHHTCCEEECSS--CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGG
T ss_pred HHHHHHHHhcCCEEEEcCC--CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccc
Confidence 2222333334777777664 47999999999999999999999999998865543
No 10
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1e-37 Score=294.67 Aligned_cols=254 Identities=25% Similarity=0.379 Sum_probs=184.7
Q ss_pred hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308 24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL 103 (311)
Q Consensus 24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~ 103 (311)
++.++|+++++++||++|+.+.+. ++||+||+++++++|++|.+. |+++||+ |+++++|+++|
T Consensus 2 ~l~~~l~~~a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~--------g~~~gd~-V~i~~~n~~e~ 64 (512)
T 3fce_A 2 KLLEQIEKWAAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSE--------YPDDRSP-IMVYGHMQPEM 64 (512)
T ss_dssp CHHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHH--------STTCCCC-EEEEESSCHHH
T ss_pred cHHHHHHHHHHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEEeCCCHHH
Confidence 578999999999999999997653 679999999999999999865 6677886 89999999999
Q ss_pred HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCccc
Q psy8308 104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESML 183 (311)
Q Consensus 104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (311)
++++|||+++|+++||+||.++.+++.++++++++++++++........ .......+.+........ ....
T Consensus 65 ~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~----- 135 (512)
T 3fce_A 65 IINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL---PVRIVSEDNLKDIFFTHK-GNTP----- 135 (512)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCC---SSEEEETHHHHHHHHHTT-TCCC-----
T ss_pred HHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccccc---ccceechhhhhhhccccc-ccCC-----
Confidence 9999999999999999999999999999999999999998644321110 111111111111100000 0000
Q ss_pred CCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCC
Q psy8308 184 HSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCG 263 (311)
Q Consensus 184 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (311)
.......++|+++|+|||||||.||||++||+++..........+.+.+.++.... .++.+..+...++. ....|
T Consensus 136 -~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~-~p~~~~~~~~~~~~---~l~~G 210 (512)
T 3fce_A 136 -NPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQ-APFSFDLSVMDIYP---SLVTG 210 (512)
T ss_dssp -CGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEEC-SCTTSGGGHHHHHH---HHHTT
T ss_pred -CccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEe-CCccHhHHHHHHHH---HHhCC
Confidence 01112457899999999999999999999999999888777777788887765433 23333333333333 33346
Q ss_pred cEEEeCCC-CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308 264 GVLIIPRD-VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT 308 (311)
Q Consensus 264 ~~~v~~~~-~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~ 308 (311)
+++++... ..++|..+++.|+++++|++..+|+++.+|+.+.+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 256 (512)
T 3fce_A 211 GTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFS 256 (512)
T ss_dssp CEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCS
T ss_pred CEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcccc
Confidence 77776543 2257999999999999999999999999988765543
No 11
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=9e-38 Score=292.52 Aligned_cols=264 Identities=17% Similarity=0.229 Sum_probs=179.7
Q ss_pred hhhhhHHHHHHHHHhhCCCceEEEecccC-ccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308 20 YKEKQLHRIFEKNAALSPDNTALIFEEQD-KDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA 98 (311)
Q Consensus 20 ~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~-~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~ 98 (311)
.+..++.++|+++++++||++|+++.+.. .....++++||+||.++++++|++|++ .| .+||+ |+++++
T Consensus 21 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~--------~g-~~gd~-V~i~~~ 90 (480)
T 3t5a_A 21 MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR--------CG-STGDR-VVISAP 90 (480)
T ss_dssp ---CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT--------SS-CTTCE-EEEECC
T ss_pred CCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh--------cC-CCCCE-EEEEcC
Confidence 34568999999999999999999976521 111122478999999999999999974 25 47886 899999
Q ss_pred CChhHHHHHHHHHHhCCeEEeCCC---CCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccc--hhhhhhhcccC
Q psy8308 99 PSSGLIQVLLAVWKAGAAYLPLDV---TAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSL--PQLRLLSASLS 173 (311)
Q Consensus 99 n~~e~~~~~la~~~~G~v~vp~~~---~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 173 (311)
|+++|++++||++++|+++||+|+ .++.+++.+++++++++++|++............ ..... ..+..... ..
T Consensus 91 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~ 168 (480)
T 3t5a_A 91 QGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVA-RRPGESPPSIIEVDL-LD 168 (480)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-------CCEEEEGGG-SC
T ss_pred CcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHh-ccccccccceeEecc-cc
Confidence 999999999999999999999999 7889999999999999999997654332211111 00000 00000000 00
Q ss_pred CCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCC------CCccceeecchhhh
Q psy8308 174 HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSP------SERVGAFKTALTFV 247 (311)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 247 (311)
... ..........++++++|+|||||||.||||++||+++..++......+.+.+ .++. +..++++
T Consensus 169 ~~~-----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~---l~~~pl~ 240 (480)
T 3t5a_A 169 LDA-----PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSAL---VSWLPFY 240 (480)
T ss_dssp TTC-----C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEE---EECCCTT
T ss_pred ccc-----ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeE---EEeCCCc
Confidence 000 0011122346789999999999999999999999999887776666565555 4543 3345555
Q ss_pred hhHHHHHHhhHhhcCCcEEEeCCCCC--CChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308 248 DAVSEIWGPLLSARCGGVLIIPRDVT--RNPDQLIGTLEKYKVERLVLVPSLLRSMLMF 304 (311)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~v~~~~~~--~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~ 304 (311)
|..+..+..+..+..|+++++..... ++|..+++.|+++++| +..+|+++..|+..
T Consensus 241 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~ 298 (480)
T 3t5a_A 241 HDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAAR 298 (480)
T ss_dssp STTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHH
T ss_pred CccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHh
Confidence 55443333333344477777765321 3799999999999999 88999999888875
No 12
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=5.2e-37 Score=291.71 Aligned_cols=268 Identities=18% Similarity=0.206 Sum_probs=186.0
Q ss_pred hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308 23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG 102 (311)
Q Consensus 23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e 102 (311)
.++.++|.++++++||++|+.+...+. .+++||+||+++++++|++|++. |+++||+ |+++++|+++
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~----~~~~Ty~el~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~n~~e 84 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRLHTGE----VHRTTYAEVYQRARRLMGGLRAL--------GVGVGDR-VATLGFNHFR 84 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEECTTSC----EEEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCSSHH
T ss_pred CCHHHHHHHHHHhCCCceEEEEecCCC----CceecHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCcHH
Confidence 479999999999999999998532211 13689999999999999999863 7788886 9999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcc
Q psy8308 103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM 182 (311)
Q Consensus 103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (311)
|+++++||+++|+++||+||.++.+++.+++++++++++|++........... .....+..+.................
T Consensus 85 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (541)
T 1v25_A 85 HLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAPEGYLAYEEA 163 (541)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCCTTCEEHHHH
T ss_pred HHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCCcccccHHHH
Confidence 99999999999999999999999999999999999999999765432111110 00000100000000000000000000
Q ss_pred --cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHH--HhhcCCCCCCccceeecchhhhhhHHHHHHhhH
Q psy8308 183 --LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQ--WATFPYSPSERVGAFKTALTFVDAVSEIWGPLL 258 (311)
Q Consensus 183 --~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
.........++++++|+|||||||.||||++||+++....... ...+.+.+.++... ..+++|..+.. ..+.
T Consensus 164 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~---~~p~~h~~~~~-~~~~ 239 (541)
T 1v25_A 164 LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLP---VVPMFHVNAWC-LPYA 239 (541)
T ss_dssp CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEE---CSCTTSHHHHT-HHHH
T ss_pred hhccCCcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEE---eccchhhhHHH-HHHH
Confidence 0000122457899999999999999999999999987665442 23345666666433 33334333321 1222
Q ss_pred hhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308 259 SARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG 309 (311)
Q Consensus 259 ~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~ 309 (311)
....|++++++.. .++|..+++.|+++++|+++++|+++..|+++.+..+
T Consensus 240 ~l~~G~~~v~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 289 (541)
T 1v25_A 240 ATLVGAKQVLPGP-RLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG 289 (541)
T ss_dssp HHHHTCEEEECTT-CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT
T ss_pred HHhcCceEEeeCC-CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC
Confidence 2334777777653 2589999999999999999999999999998876543
No 13
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=6.3e-37 Score=293.92 Aligned_cols=267 Identities=22% Similarity=0.227 Sum_probs=191.5
Q ss_pred hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308 19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA 98 (311)
Q Consensus 19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~ 98 (311)
..+..++.++|+++|+++||++|+.+.+.+. .+++||+||.++++++|++|++. |+++||+ |+++++
T Consensus 7 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~----~~~~Ty~eL~~~~~~lA~~L~~~--------gv~~gd~-V~i~~~ 73 (590)
T 3kxw_A 7 YLQCQSLVDVVRLRALHSPNKKSCTFLNKEL----EETMTYEQLDQHAKAIAATLQAE--------GAKPGDR-VLLLFA 73 (590)
T ss_dssp HHTCSSHHHHHHHHHHHCTTSEEEEEEETTE----EEEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECC
T ss_pred hcCcccHHHHHHHHHHhCCCCeEEEEEcCCe----eEEEcHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcC
Confidence 4556799999999999999999998754211 13689999999999999999864 7788886 999999
Q ss_pred CChhHHHHHHHHHHhCCeEEeCCCCC---cHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCC
Q psy8308 99 PSSGLIQVLLAVWKAGAAYLPLDVTA---PEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHN 175 (311)
Q Consensus 99 n~~e~~~~~la~~~~G~v~vp~~~~~---~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
|+++|++++|||+++|+++||+||.+ ..+++.++++++++++++++....................+......
T Consensus 74 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 149 (590)
T 3kxw_A 74 PGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALE---- 149 (590)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGG----
T ss_pred CchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeech----
Confidence 99999999999999999999999988 56899999999999999996543321111100000000000000000
Q ss_pred CCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHH
Q psy8308 176 NIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWG 255 (311)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (311)
................++|+++|+|||||||.||||++||+++...+......+.+.+.++... ..+++|..+....
T Consensus 150 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~---~~p~~h~~g~~~~ 226 (590)
T 3kxw_A 150 SIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFS---WLPPHHDMGLIGC 226 (590)
T ss_dssp GCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEE---CSCTTSHHHHHTT
T ss_pred hccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEE---ecCCCcchhhHHH
Confidence 0000000011122346789999999999999999999999999988887777788888776533 3444444332221
Q ss_pred hhHhhcCCcEEEeCCCCCC--ChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308 256 PLLSARCGGVLIIPRDVTR--NPDQLIGTLEKYKVERLVLVPSLLRSMLMFL 305 (311)
Q Consensus 256 ~~~~~~~g~~~v~~~~~~~--~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~ 305 (311)
.+.....|+++++...+.+ +|..+++.|+++++|++..+|+++..|++..
T Consensus 227 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 278 (590)
T 3kxw_A 227 ILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRI 278 (590)
T ss_dssp THHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHC
T ss_pred HHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHh
Confidence 2222334777777654322 7999999999999999999999999998864
No 14
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.2e-36 Score=289.77 Aligned_cols=265 Identities=18% Similarity=0.247 Sum_probs=181.9
Q ss_pred hhhhhHHHHHHHHHhhCCCceEEE---ecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEE
Q psy8308 20 YKEKQLHRIFEKNAALSPDNTALI---FEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS 96 (311)
Q Consensus 20 ~~~~~l~~~~~~~a~~~pd~~Ai~---~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~ 96 (311)
.+..++.+++.+.++++|+++|++ +...+ +++||+||+++++++|++|++. |+++||+ |+++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~--------Gv~~gd~-V~i~ 81 (550)
T 3rix_A 17 LEDGTAGEQLHKAMKRYALVPGTIAFTDAHIE------VNITYAEYFEMSVRLAEAMKRY--------GLNTNHR-IVVC 81 (550)
T ss_dssp CCCSCHHHHHHHHHHHHHTSTTCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHH--------TCCTTCE-EEEE
T ss_pred cccCCHHHHHHHHHHhCCCCceEEEeeecCCC------cEeEHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEE
Confidence 345689999999999999999865 22211 2689999999999999999865 6788886 9999
Q ss_pred eCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhh-------
Q psy8308 97 LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLS------- 169 (311)
Q Consensus 97 ~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 169 (311)
++|+++|+++++||+++|+++||+||.++.+++.+++++++++++|++............ ....+..+....
T Consensus 82 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 160 (550)
T 3rix_A 82 SENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTDYQG 160 (550)
T ss_dssp CSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSCBTT
T ss_pred cCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCccccC
Confidence 999999999999999999999999999999999999999999999997654322111100 000000000000
Q ss_pred --------cccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhh---cCCCCCCccc
Q psy8308 170 --------ASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWAT---FPYSPSERVG 238 (311)
Q Consensus 170 --------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~~ 238 (311)
.......... ..........++|+++|+|||||||.||||++||+++...+...... ..+.+.++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l 238 (550)
T 3rix_A 161 FQSMYTFVTSHLPPGFNE--YDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAIL 238 (550)
T ss_dssp BCBHHHHHHHHCCTTCCT--TTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEE
T ss_pred cccHHHHhhccccccccc--cccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEE
Confidence 0000000000 00001111235789999999999999999999999998776554433 3455566543
Q ss_pred eeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308 239 AFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT 308 (311)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~ 308 (311)
...+++|..+. +..+.....|+++++... +++..+++.|+++++|+++++|+++..|+++....
T Consensus 239 ---~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 302 (550)
T 3rix_A 239 ---SVVPFHHGFGM-FTTLGYLICGFRVVLMYR--FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID 302 (550)
T ss_dssp ---ECSCTTSHHHH-HHHHHHHHHTCEEEECSS--CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGG
T ss_pred ---EechHHHHHHH-HHHHHHHHcCCEEEEeCC--CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcccc
Confidence 33444443332 222333445778887764 57999999999999999999999999999876543
No 15
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.5e-36 Score=289.10 Aligned_cols=263 Identities=16% Similarity=0.193 Sum_probs=181.5
Q ss_pred hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308 24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL 103 (311)
Q Consensus 24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~ 103 (311)
...++|+++|+++||++|+++.+.... .+++||+||.++++++|++|++. |+++||+ |+++++|+++|
T Consensus 57 ~~~~~l~~~a~~~pd~~Al~~~~~~g~---~~~~Ty~eL~~~~~~~A~~L~~~--------Gv~~Gd~-V~l~~~~~~e~ 124 (580)
T 3etc_A 57 FAYDVVDVYARDSPEKLAMIWCDDYGN---EKIFTFKDLKYYSDKAANFFVKH--------GIGKGDY-VMLTLKSRYDF 124 (580)
T ss_dssp HHHHTHHHHHHHCTTCEEEEEEESSSC---EEEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECTTCTHH
T ss_pred HHHHHHHHHHhhCCCCEEEEEEcCCCC---EeEEeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCHHH
Confidence 345999999999999999997543221 23789999999999999999863 7888996 99999999999
Q ss_pred HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhh-hhhhhc----c---cccccchh-----hhhhhc
Q psy8308 104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC-ENLAYK----G---RTVLSLPQ-----LRLLSA 170 (311)
Q Consensus 104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~-~~~~~~----~---~~~~~~~~-----~~~~~~ 170 (311)
++++|||+++|+++||++|.++.+++.+++++++++++|++.+... ...... . .....+.. ......
T Consensus 125 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (580)
T 3etc_A 125 WYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRK 204 (580)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHH
T ss_pred HHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHH
Confidence 9999999999999999999999999999999999999999765321 111000 0 00000000 000000
Q ss_pred ccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhH
Q psy8308 171 SLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAV 250 (311)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (311)
...... ..... ........++|+++|+|||||||.||||+++|+++...+........+.+.++.... .+..+....
T Consensus 205 ~~~~~~-~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 281 (580)
T 3etc_A 205 ELEESS-PIFER-PTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTV-ADSGWGKCV 281 (580)
T ss_dssp HHHHSC-SCCCC-CCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEEC-CCTTSTHHH
T ss_pred HHhhCC-ccccc-CccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEe-CChHHHHHH
Confidence 000000 00000 000013467899999999999999999999999887766554444566666654332 222222111
Q ss_pred -HHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308 251 -SEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF 304 (311)
Q Consensus 251 -~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~ 304 (311)
..++.++. .|+++++.....+++..+++.|+++++|+++++|+++++|++.
T Consensus 282 ~~~~~~~l~---~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 333 (580)
T 3etc_A 282 WGKLYGQWI---AGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE 333 (580)
T ss_dssp HHTTHHHHH---TTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS
T ss_pred HHHHHHHHh---CCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc
Confidence 12233333 3667766532346899999999999999999999999988864
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=9.8e-37 Score=287.90 Aligned_cols=252 Identities=23% Similarity=0.315 Sum_probs=185.8
Q ss_pred hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308 24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL 103 (311)
Q Consensus 24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~ 103 (311)
++.++|+++|+++||++|+.+.+. ++||+||+++++++|++|++. .+..+||+ |+++++|+++|
T Consensus 2 ~l~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~-------~~~~~g~~-V~i~~~n~~~~ 65 (511)
T 3e7w_A 2 KLLHAIQTHAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKR-------ISGEKKSP-ILVYGHMEPHM 65 (511)
T ss_dssp CHHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTT-------SCSSSCCC-EEEEESSCHHH
T ss_pred cHHHHHHHHHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHh-------cCCCCCCe-EEEEecCCHHH
Confidence 578999999999999999997543 679999999999999999743 14456675 89999999999
Q ss_pred HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCccc
Q psy8308 104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESML 183 (311)
Q Consensus 104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (311)
++++||++++|+++||+|+.++.+++.+++++++++++|++.......... .........+. .. ....
T Consensus 66 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~-~~~~~~~~~~~---~~---~~~~----- 133 (511)
T 3e7w_A 66 IVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQ-QIQTVSAEELL---EN---EGGS----- 133 (511)
T ss_dssp HHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCC-SSCEEEHHHHH---TS---CSCC-----
T ss_pred HHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccc-ccceecHhhhh---cc---ccCC-----
Confidence 999999999999999999999999999999999999999865432111100 00111111111 00 0000
Q ss_pred CCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCC
Q psy8308 184 HSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCG 263 (311)
Q Consensus 184 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (311)
........++|+++|+|||||||.||||++||+++..........+.+.+.++...+ .++.+..+...++ .....|
T Consensus 134 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~-~p~~~~~~~~~~~---~~l~~G 209 (511)
T 3e7w_A 134 VSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQ-APFSFDLSVMDLY---PCLQSG 209 (511)
T ss_dssp CCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEEC-SCTTSTHHHHHHH---HHHHTT
T ss_pred ccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEe-CCccHHHHHHHHH---HHHhcC
Confidence 001112457899999999999999999999999999888777777778777765332 2333333332233 333447
Q ss_pred cEEEeCCCC-CCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308 264 GVLIIPRDV-TRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM 307 (311)
Q Consensus 264 ~~~v~~~~~-~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~ 307 (311)
+++++.... .++|..+++.|+++++|++..+|+++.+|+++.+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 254 (511)
T 3e7w_A 210 GTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF 254 (511)
T ss_dssp CEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC
T ss_pred CEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc
Confidence 777765431 25799999999999999999999999999876543
No 17
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=5.3e-37 Score=297.99 Aligned_cols=268 Identities=21% Similarity=0.220 Sum_probs=184.3
Q ss_pred hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHH-hhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308 24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLL-HFLHTKAVPNENQDGDHIVAVSLAPSSG 102 (311)
Q Consensus 24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~-~~~~~~~~~~g~~~gd~~Vai~~~n~~e 102 (311)
++.++++++++++||++|+++.+... ...+++||+||.++++++|++|+ + .|+++||+ |+|+++|++|
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~--~~~~~~TY~eL~~~v~~lA~~L~~~--------~Gv~~Gd~-V~i~~~~~~e 151 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEP--GQGYSITYKELLEEVCQVAQVLTYS--------MGVRKGDT-VAVYMPMVPE 151 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSST--TCCEEEEHHHHHHHHHHHHHHHHHT--------SCCCTTCE-EEECCCSSHH
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCC--CceEEEEHHHHHHHHHHHHHHHHHh--------cCCCCCCE-EEEEcCCCHH
Confidence 67899999999999999999753211 11237899999999999999997 5 37888996 9999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh--------hhhhcccccccchhhhhhhcccC-
Q psy8308 103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE--------NLAYKGRTVLSLPQLRLLSASLS- 173 (311)
Q Consensus 103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~- 173 (311)
+++++|||+++|++++|+++.++.+++.+++++++++++|+++..... ...........+..+..+.....
T Consensus 152 ~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 231 (663)
T 1ry2_A 152 AIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP 231 (663)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCS
T ss_pred HHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 999999999999999999999999999999999999999997653210 00000000000000000000000
Q ss_pred CCCC-CC----------CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHH-HHhhcCCCCCCccceee
Q psy8308 174 HNNI-PG----------ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAW-QWATFPYSPSERVGAFK 241 (311)
Q Consensus 174 ~~~~-~~----------~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~-~~~~~~~~~~~~~~~~~ 241 (311)
.... .. ...........+++|+++|+|||||||.||||++||++++..... ....+.+.+.+++...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~- 310 (663)
T 1ry2_A 232 SVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA- 310 (663)
T ss_dssp SCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEEC-
T ss_pred ccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEc-
Confidence 0000 00 000001112245789999999999999999999999998765533 3345677777765433
Q ss_pred cchhhhhhH-HHHHHhhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308 242 TALTFVDAV-SEIWGPLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK 306 (311)
Q Consensus 242 ~~~~~~~~~-~~~~~~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~ 306 (311)
.++.+..+. ..++.++.. |+++++... ..+++..+++.|++++||+++++|++++.|+++.+
T Consensus 311 ~~~~~~~g~~~~~~~~L~~---G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~ 375 (663)
T 1ry2_A 311 GDIGWITGHTYVVYGPLLY---GCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD 375 (663)
T ss_dssp SCTTSHHHHHHTTHHHHHH---TSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT
T ss_pred CCcHHhhhhHHHHHHHHHh---CCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc
Confidence 233333222 222344443 666666542 23589999999999999999999999999887543
No 18
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.6e-36 Score=285.81 Aligned_cols=256 Identities=16% Similarity=0.170 Sum_probs=183.5
Q ss_pred hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308 24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL 103 (311)
Q Consensus 24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~ 103 (311)
+|.++|+++++++||++|+.+.+. ++||+||+++++++|++|++. +||+ |+++++|+++|
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~-----------~gd~-V~i~~~n~~e~ 61 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY-----------QQSR-VGLYIDNSIQS 61 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT-----------CCSE-EEEECCSSHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc-----------CCCE-EEEEcCCCHHH
Confidence 466789999999999999997542 679999999999999999731 5675 99999999999
Q ss_pred HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhh---hhc------ccCC
Q psy8308 104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRL---LSA------SLSH 174 (311)
Q Consensus 104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~ 174 (311)
+++++||+++|+++||+|+.++++++.+++++++++++|++............ ...+..... ... ....
T Consensus 62 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (501)
T 3ipl_A 62 IILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLLDNTMGIQY 139 (501)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC----------------------
T ss_pred HHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccccccccccc
Confidence 99999999999999999999999999999999999999997654321110000 000000000 000 0000
Q ss_pred ----CCC-CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhh
Q psy8308 175 ----NNI-PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDA 249 (311)
Q Consensus 175 ----~~~-~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (311)
... .............+++|+++|+|||||||.||||++||+++..........+.+.+.++.... .++.+..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~-~p~~~~~g 218 (501)
T 3ipl_A 140 DTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSV-LPIYHISG 218 (501)
T ss_dssp ----------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEEC-SCTTSHHH
T ss_pred ccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEe-CcHHHHHH
Confidence 000 000000001123467899999999999999999999999999887777777788877765433 23333333
Q ss_pred HHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308 250 VSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM 307 (311)
Q Consensus 250 ~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~ 307 (311)
+..++.+ ...|+++++... ++++.+++.|+++++|++.++|+++..|+++...
T Consensus 219 ~~~~~~~---l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 271 (501)
T 3ipl_A 219 LSVLLRA---VIEGFTVRIVDK--FNAEQILTMIKNERITHISLVPQTLNWLMQQGLH 271 (501)
T ss_dssp HHHHHHH---HHHTCEEEECSS--CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC
T ss_pred HHHHHHH---HHcCceEEeCCC--CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC
Confidence 3333333 334777877764 5899999999999999999999999999987653
No 19
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=3e-36 Score=287.71 Aligned_cols=250 Identities=26% Similarity=0.394 Sum_probs=180.1
Q ss_pred hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308 22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS 101 (311)
Q Consensus 22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~ 101 (311)
..++.++|.++++++||++|+.+.+. ++||+||.++++++|++|++. |+++||+ |+++++|++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~n~~ 100 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEK--------GIGKDTL-VGIMMEKSI 100 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCSSH
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCCH
Confidence 45899999999999999999987542 679999999999999999863 6788886 999999999
Q ss_pred hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc-ccccccchhhhhhhcccCCCCCCCC
Q psy8308 102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK-GRTVLSLPQLRLLSASLSHNNIPGE 180 (311)
Q Consensus 102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
+|+++++|++++|+++||+||.++.+++.+++++++++++|++........... ...+..+ .. ......
T Consensus 101 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~ 170 (563)
T 1amu_A 101 DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIF------EE----DTIKIR 170 (563)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEEC------CC----STTTTS
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeee------cc----hhhccc
Confidence 999999999999999999999999999999999999999999764322111000 0000000 00 000000
Q ss_pred cccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhh
Q psy8308 181 SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSA 260 (311)
Q Consensus 181 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
. .........++|+++|+|||||||.||||++||+++..........+.+.+.++...+ .++.|..+... .+..+
T Consensus 171 ~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~-~p~~~~~~~~~---~~~~l 245 (563)
T 1amu_A 171 E-GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQF-ASISFDASVWE---MFMAL 245 (563)
T ss_dssp C-CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEEC-SCTTSTHHHHH---HHHHH
T ss_pred c-CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEe-CCccHHHHHHH---HHHHH
Confidence 0 0011122457899999999999999999999999998777666666777777765433 33333333222 33344
Q ss_pred cCCcEEEeCCCC-CCChhHHHHHHhhcCceEEEeChHHHHHHHH
Q psy8308 261 RCGGVLIIPRDV-TRNPDQLIGTLEKYKVERLVLVPSLLRSMLM 303 (311)
Q Consensus 261 ~~g~~~v~~~~~-~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~ 303 (311)
..|+++++.... .+++..+++.|+++++|++.++|+++..|..
T Consensus 246 ~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 289 (563)
T 1amu_A 246 LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP 289 (563)
T ss_dssp TTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT
T ss_pred HCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh
Confidence 457777776532 2579999999999999999999999877643
No 20
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.3e-36 Score=293.11 Aligned_cols=269 Identities=21% Similarity=0.242 Sum_probs=184.8
Q ss_pred hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308 24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL 103 (311)
Q Consensus 24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~ 103 (311)
++.++|+++++++||++|+++.+.+.. ..+++||+||.++++++|++|++. |+++||+ |+|+++|++++
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~--------Gv~~Gd~-V~i~~~~~~e~ 145 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTS--QSKHISYRELHRDVCRFANTLLDL--------GIKKGDV-VAIYMPMVPEA 145 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTT--CEEEEEHHHHHHHHHHHHHHHHHH--------TCCTTCE-EEEECCSSHHH
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCC--ceeEEeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCCHHH
Confidence 578899999999999999997532111 123789999999999999999865 6788896 99999999999
Q ss_pred HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh--------hhhhc--ccccccchhhhhhhcccC
Q psy8308 104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE--------NLAYK--GRTVLSLPQLRLLSASLS 173 (311)
Q Consensus 104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~ 173 (311)
++++|||+++|+++||+++.++++++.+++++++++++|+++..... ..... ......+..+..+.....
T Consensus 146 vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 225 (652)
T 1pg4_A 146 AVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225 (652)
T ss_dssp HHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCC
T ss_pred HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999999997653210 00000 000000000000000000
Q ss_pred CCCC-C----------CCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHH-HHhhcCCCCCCccceee
Q psy8308 174 HNNI-P----------GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAW-QWATFPYSPSERVGAFK 241 (311)
Q Consensus 174 ~~~~-~----------~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~-~~~~~~~~~~~~~~~~~ 241 (311)
.... . .............++|+++|+|||||||.||||++||++++..... ....+.+.+.+++..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~- 304 (652)
T 1pg4_A 226 DIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT- 304 (652)
T ss_dssp CCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC-
T ss_pred cccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEc-
Confidence 0000 0 0000001112235789999999999999999999999998765533 3345677777765432
Q ss_pred cchhhhhhHHHHHHhhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308 242 TALTFVDAVSEIWGPLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK 306 (311)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~ 306 (311)
.++.|. .+..+..+..+..|+++++... ..++|..+++.|++++||+++++|++++.|+++.+
T Consensus 305 ~~~~~~--~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 369 (652)
T 1pg4_A 305 ADVGWV--TGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD 369 (652)
T ss_dssp SCTTSH--HHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGG
T ss_pred cCCeee--echHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCc
Confidence 233333 2222222233334777777543 23589999999999999999999999999998654
No 21
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=8.1e-36 Score=282.24 Aligned_cols=251 Identities=24% Similarity=0.325 Sum_probs=180.3
Q ss_pred hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308 23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG 102 (311)
Q Consensus 23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e 102 (311)
.++.++|+++++++||++|+.+.+. ++||+||+++++++|++|++. |+++||+ |+++++|+++
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~--------g~~~gd~-V~i~~~n~~~ 66 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSL--------ALLAKSP-VLVFGAQTYD 66 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHT--------CCCTTCC-EEEEECSSHH
T ss_pred HHHHHHHHHHHHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCCHH
Confidence 4688999999999999999987653 579999999999999999864 7788897 8999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcc
Q psy8308 103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM 182 (311)
Q Consensus 103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (311)
|+++++||+++|+++||+|+.++++++.+++++++++++|++.+..... .......+..+...... ..+.
T Consensus 67 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~--- 136 (521)
T 3l8c_A 67 MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI---EGISLVSLSEIESAKLA----EMPY--- 136 (521)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC---TTSEEEEHHHHHHHHHH----TCCC---
T ss_pred HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc---ccCcccchhhhhhcccc----cCCc---
Confidence 9999999999999999999999999999999999999999976532111 01111111111110000 0000
Q ss_pred cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhh--cCCCCCCccceeecchhhhhhHHHHHHhhHhh
Q psy8308 183 LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWAT--FPYSPSERVGAFKTALTFVDAVSEIWGPLLSA 260 (311)
Q Consensus 183 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
.......++|+++|+|||||||.||||++||+++.......... +...+.++... ..++.+..+...++..+
T Consensus 137 --~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~l--- 210 (521)
T 3l8c_A 137 --ERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLA-QPPYSFDLSVMYWAPTL--- 210 (521)
T ss_dssp --CCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEEC-CSCTTSGGGHHHHHHHH---
T ss_pred --ccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEe-cCCccHHHHHHHHHHHH---
Confidence 11122457899999999999999999999999998766555443 44555554322 22333333322223233
Q ss_pred cCCcEEEeCCC-CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308 261 RCGGVLIIPRD-VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK 306 (311)
Q Consensus 261 ~~g~~~v~~~~-~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~ 306 (311)
..|+++++.+. ...++..+++.|+++++|++..+|+++..++...+
T Consensus 211 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 257 (521)
T 3l8c_A 211 ALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD 257 (521)
T ss_dssp HTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT
T ss_pred hcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc
Confidence 34666666543 23479999999999999999999999998887654
No 22
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=8.4e-36 Score=283.80 Aligned_cols=262 Identities=19% Similarity=0.258 Sum_probs=183.3
Q ss_pred hhHHH-HHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308 23 KQLHR-IFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS 101 (311)
Q Consensus 23 ~~l~~-~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~ 101 (311)
.++.+ ++.+.++++ |++|+++...+ +++||+||.++++++|++|++. |+++||+ |+++++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~n~~ 88 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNY--------GLVVDGR-IALCSENCE 88 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHH--------TCCTTCE-EEEECSSCT
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCch
Confidence 57888 888888888 99999874221 2679999999999999999864 6778886 999999999
Q ss_pred hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc-----ccccccchhh------hhhhc
Q psy8308 102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK-----GRTVLSLPQL------RLLSA 170 (311)
Q Consensus 102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~------~~~~~ 170 (311)
+|+++++||+++|+++||+||.++.+++.+++++++++++|++........... ...+..++.. .....
T Consensus 89 e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (548)
T 2d1s_A 89 EFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDT 168 (548)
T ss_dssp TTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHH
T ss_pred hHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHH
Confidence 999999999999999999999999999999999999999999765432211100 0111101000 00000
Q ss_pred ccCCCCCCCCcccCCCCCCC-CCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhh---cCCCCCCccceeecchhh
Q psy8308 171 SLSHNNIPGESMLHSDNNNE-QSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWAT---FPYSPSERVGAFKTALTF 246 (311)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~-~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 246 (311)
.................... .++|+++|+|||||||.||||++||+++.......... +.+.+.++.. ...++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l---~~~p~ 245 (548)
T 2d1s_A 169 FIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVL---TVVPF 245 (548)
T ss_dssp HHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEE---ECSCT
T ss_pred HHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEE---EeccH
Confidence 00000000000000000001 23899999999999999999999999998776655444 4556666543 33444
Q ss_pred hhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308 247 VDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK 306 (311)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~ 306 (311)
+|..+.....+... .|+++++... ++++.+++.|+++++|+++++|+++..|+++.+
T Consensus 246 ~h~~g~~~~~~~~l-~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 302 (548)
T 2d1s_A 246 HHGFGMFTTLGYLI-CGFRVVMLTK--FDEETFLKTLQDYKCTSVILVPTLFAILNKSEL 302 (548)
T ss_dssp TSHHHHHHHHHHHH-TTCEEEECCC--CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHh-cCcEEEEcCC--CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc
Confidence 44444322222223 5778887764 589999999999999999999999999988654
No 23
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.9e-36 Score=289.90 Aligned_cols=263 Identities=21% Similarity=0.262 Sum_probs=189.7
Q ss_pred hhhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEe
Q psy8308 18 KIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSL 97 (311)
Q Consensus 18 ~~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~ 97 (311)
..|++.++.++|+++++ ||++|+++.+. ++||+||+++++++|+.|++. |+++||+ |++++
T Consensus 22 ~~~~~~~l~~~~~~~a~--pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~--------Gv~~gd~-V~l~~ 82 (617)
T 3rg2_A 22 GYWQDLPLTDILTRHAA--SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQ--------GIKPGET-ALVQL 82 (617)
T ss_dssp TSCCCCCTTHHHHTTTT--CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEEC
T ss_pred CCCCcCCHHHHHHHhhC--CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEC
Confidence 46677899999999988 99999997653 679999999999999999863 7788886 99999
Q ss_pred CCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhh----hhhcccccccchhhhhhhcccC
Q psy8308 98 APSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACEN----LAYKGRTVLSLPQLRLLSASLS 173 (311)
Q Consensus 98 ~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
+|+++|++++|||+++|+++||++|.++.+++.++++++++++++++....... ......................
T Consensus 83 ~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (617)
T 3rg2_A 83 GNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE 162 (617)
T ss_dssp CSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST
T ss_pred CCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc
Confidence 999999999999999999999999999999999999999999999976432100 0000000000000000000000
Q ss_pred C--CCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHH
Q psy8308 174 H--NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVS 251 (311)
Q Consensus 174 ~--~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
. .................++++++|+|||||||.||||+++|+++...+......+.+.+.++...+ .++.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~---~p~~~~~~ 239 (617)
T 3rg2_A 163 HNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCA---IPAAHNYA 239 (617)
T ss_dssp TBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEEC---SCTTSHHH
T ss_pred cchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEe---ccchhhhh
Confidence 0 000000000011123457899999999999999999999999999888777777788887775433 33333322
Q ss_pred ----HHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308 252 ----EIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM 307 (311)
Q Consensus 252 ----~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~ 307 (311)
.++.++. .|+++++..+ +++..+++.|+++++|++.++|+++..|+++...
T Consensus 240 ~~~~~~~~~l~---~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 294 (617)
T 3rg2_A 240 MSSPGSLGVFL---AGGTVVLAAD--PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIE 294 (617)
T ss_dssp HHSSHHHHHHH---HTCEEEECSS--CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHH---cCCEEEEeCC--CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhc
Confidence 2343444 3677777654 4799999999999999999999999999987654
No 24
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=3.4e-36 Score=285.36 Aligned_cols=256 Identities=18% Similarity=0.196 Sum_probs=176.4
Q ss_pred hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308 23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG 102 (311)
Q Consensus 23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e 102 (311)
.++.++++++++ +||++|+.+.+. ++||+||+++++++|++|++. |+++||+ |+++++|+++
T Consensus 24 ~~~~~~l~~~~~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~n~~~ 85 (529)
T 2v7b_A 24 NFAAYLFRLNET-RAGKTAYIDDTG--------STTYGELEERARRFASALRTL--------GVHPEER-ILLVMLDTVA 85 (529)
T ss_dssp CHHHHHHHHTGG-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCSSTH
T ss_pred eHHHHHHHhhhc-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCcHH
Confidence 358899999999 999999987532 679999999999999999853 7788886 9999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcc------cccccchhhh-------hhh
Q psy8308 103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG------RTVLSLPQLR-------LLS 169 (311)
Q Consensus 103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~------~~~~~~~~~~-------~~~ 169 (311)
|++++|||+++|+++||+|+.++.+++.+++++++++++|++............ ..+...+... ...
T Consensus 86 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (529)
T 2v7b_A 86 LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFE 165 (529)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHH
T ss_pred HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchh
Confidence 999999999999999999999999999999999999999997654321111100 1110000000 000
Q ss_pred cccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhH-HHHHHHHHhhcCCCCCCccceeecchhhhh
Q psy8308 170 ASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVI-LNRLAWQWATFPYSPSERVGAFKTALTFVD 248 (311)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (311)
....... .........++|+++|+|||||||.||||++||+++ ..........+.+.+.++.. ...++.|
T Consensus 166 ~~~~~~~------~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~---~~~p~~~ 236 (529)
T 2v7b_A 166 ELIDAAA------PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVF---SAAKLFF 236 (529)
T ss_dssp HHHHTSC------CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEE---ESSCTTS
T ss_pred hhhccCC------CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEE---EeecHHH
Confidence 0000000 001112346789999999999999999999999998 44433333334566666543 3344444
Q ss_pred hHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308 249 AVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK 306 (311)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~ 306 (311)
..+.....+.....|+++++... .+++..+++.|+++++|++..+|+++..|++..+
T Consensus 237 ~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 293 (529)
T 2v7b_A 237 AYGLGNGLTFPLSVGATAILMAE-RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN 293 (529)
T ss_dssp HHHHHHHTHHHHHHTCEEECCCS-CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc
Confidence 44332222333334777776532 3589999999999999999999999999987543
No 25
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=2e-36 Score=285.25 Aligned_cols=251 Identities=22% Similarity=0.305 Sum_probs=178.5
Q ss_pred HHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHH
Q psy8308 27 RIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQV 106 (311)
Q Consensus 27 ~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~ 106 (311)
++|.+.++++|+++|+.....+. +++||+||+++++++|++|++. |+++||+ |+++++|+++|+++
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~-----~~~Ty~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~~~~~~~~~ 69 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAG-----DKISYAELVARAGRVANVLVAR--------GLQVGDR-VAAQTEKSVEALVL 69 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTC-----CEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCSCHHHHHH
T ss_pred hHHHHHHHhCCCCceEEEecCCC-----cEEEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCHHHHHH
Confidence 46788999999999987532221 2679999999999999999863 7788886 99999999999999
Q ss_pred HHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc---ccccccchhh--hhhhcccCCCCCCCCc
Q psy8308 107 LLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK---GRTVLSLPQL--RLLSASLSHNNIPGES 181 (311)
Q Consensus 107 ~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~ 181 (311)
++||+++|+++||+||.++.+++.+++++++++++|++........... ...+..+... ......... . .
T Consensus 70 ~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-- 144 (503)
T 4fuq_A 70 YLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAG-A--S-- 144 (503)
T ss_dssp HHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHT-S--C--
T ss_pred HHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhc-C--C--
Confidence 9999999999999999999999999999999999999765322111100 0001000000 000000000 0 0
Q ss_pred ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHH---HHHhhH
Q psy8308 182 MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSE---IWGPLL 258 (311)
Q Consensus 182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 258 (311)
.........++|+++|+|||||||.||||++||+++..........+.+.+.++.... ++++|..+. .+..++
T Consensus 145 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~---~p~~~~~g~~~~~~~~l~ 220 (503)
T 4fuq_A 145 -EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHA---LPIYHTHGLFVASNVTLF 220 (503)
T ss_dssp -SCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEEC---SCSSSHCCCCCCHHHHHH
T ss_pred -CCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEe---CChHHHHHHHHHHHHHHH
Confidence 0011123457899999999999999999999999999888777777788887765332 333333221 222333
Q ss_pred hhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308 259 SARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM 307 (311)
Q Consensus 259 ~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~ 307 (311)
.|+.+++.+. ++|+.+++.|+ ++|+++.+|+++..|+++.+.
T Consensus 221 ---~g~~~~~~~~--~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~ 262 (503)
T 4fuq_A 221 ---ARGSMIFLPK--FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRL 262 (503)
T ss_dssp ---TTCEEEECSS--CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTC
T ss_pred ---hCCEEEEcCC--CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCc
Confidence 3666666653 58999999998 899999999999999987654
No 26
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.3e-35 Score=299.88 Aligned_cols=268 Identities=18% Similarity=0.225 Sum_probs=189.9
Q ss_pred hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308 22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS 101 (311)
Q Consensus 22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~ 101 (311)
..++.++|.++++++||++|+++...+ +++||+||+++++++|++|++. |+++||+ |+++++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~------~~~TY~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~ns~ 124 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTG------HVYTYSDVHVISRQIAANFHKL--------GVNQNDV-VMLLLPNCP 124 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECSSCH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCC------cEEEHHHHHHHHHHHHHHHHHc--------CCCCcCE-EEEEeCCCH
Confidence 468999999999999999999975422 2679999999999999999864 7788886 999999999
Q ss_pred hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc---ccccccchhhhhh---hcccCCC
Q psy8308 102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK---GRTVLSLPQLRLL---SASLSHN 175 (311)
Q Consensus 102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~ 175 (311)
+|++++|||+++|+++||+||.++++++.+++++++++++|++........... ...+..++..... .......
T Consensus 125 e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (979)
T 3tsy_A 125 EFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFT 204 (979)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEGG
T ss_pred HHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccHH
Confidence 999999999999999999999999999999999999999999765432211110 0001000000000 0000000
Q ss_pred CC---CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHh----hcCCCCCCccceeecchhhhh
Q psy8308 176 NI---PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA----TFPYSPSERVGAFKTALTFVD 248 (311)
Q Consensus 176 ~~---~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 248 (311)
.. ..............++|+++|+|||||||.||||++||+++...+..... .+.+.+.++.. ..++++|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l---~~~p~~h 281 (979)
T 3tsy_A 205 ELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVIL---CVLPMFH 281 (979)
T ss_dssp GTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEE---ECSCSSS
T ss_pred HHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEE---EECchHH
Confidence 00 00000011122356899999999999999999999999999877655433 23455566543 3344444
Q ss_pred hHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308 249 AVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG 309 (311)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~ 309 (311)
..+.....+.....|+++++.+. +++..+++.|+++++|++.++|+++..|+++.+...
T Consensus 282 ~~~~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 340 (979)
T 3tsy_A 282 IYALNSIMLCGLRVGAAILIMPK--FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEK 340 (979)
T ss_dssp HHHHHHTHHHHHHHTCEEEECSS--CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGT
T ss_pred HHHHHHHHHHHHhcCcEEEEeCC--CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccC
Confidence 43332222333344777777764 479999999999999999999999999998776543
No 27
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2e-35 Score=282.34 Aligned_cols=266 Identities=18% Similarity=0.152 Sum_probs=179.6
Q ss_pred hhHHHHHHHHHhh-----CCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEe
Q psy8308 23 KQLHRIFEKNAAL-----SPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSL 97 (311)
Q Consensus 23 ~~l~~~~~~~a~~-----~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~ 97 (311)
..+.++++++++. +||++|+.+.+.... .+++||+||+++++++|++|++. .|+++||+ |++++
T Consensus 38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~---~~~~Ty~el~~~~~~lA~~L~~~-------~Gv~~gd~-V~i~~ 106 (570)
T 3c5e_A 38 NFASDVLDHWADMEKAGKRPPSPALWWVNGKGK---ELMWNFRELSENSQQAANVLSGA-------CGLQRGDR-VAVVL 106 (570)
T ss_dssp CHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSC---EEEEEHHHHHHHHHHHHHHHHTT-------TCCCTTCE-EEEEC
T ss_pred cHHHHHHHHHHhhccccCCCCceEEEEEcCCCc---eeEEeHHHHHHHHHHHHHHHHHc-------cCCCCCCE-EEEEc
Confidence 3567899999998 999999987432110 13689999999999999999742 16788886 99999
Q ss_pred CCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCC--
Q psy8308 98 APSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHN-- 175 (311)
Q Consensus 98 ~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 175 (311)
+|+++|++++|||+++|+++||+||.++.+++.+++++++++++|++........... .....+..+..........
T Consensus 107 ~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 185 (570)
T 3c5e_A 107 PRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLLVSEKSCDGWL 185 (570)
T ss_dssp CSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEEESSSCCTTSE
T ss_pred CCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEEecccCccccc
Confidence 9999999999999999999999999999999999999999999999765432211100 0000000000000000000
Q ss_pred ---CCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHH-HHHHHHhhcCCCCCCccceeecchhhhhhHH
Q psy8308 176 ---NIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILN-RLAWQWATFPYSPSERVGAFKTALTFVDAVS 251 (311)
Q Consensus 176 ---~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
................++|+++|+|||||||.||||++||+.+.. ..... ..+.+.+.++... ..++.|..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~---~~p~~~~~~ 261 (570)
T 3c5e_A 186 NFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWT---ISDTGWILN 261 (570)
T ss_dssp EHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEE---CCCTTSHHH
T ss_pred cHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEE---cCchHHHHH
Confidence 000000000011224578999999999999999999999994332 33233 4456666666433 233333333
Q ss_pred HHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308 252 EIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF 304 (311)
Q Consensus 252 ~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~ 304 (311)
.....+.....|+++++.....++|..+++.|+++++|+++.+|+++.+|+++
T Consensus 262 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 314 (570)
T 3c5e_A 262 ILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ 314 (570)
T ss_dssp HHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS
T ss_pred HHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc
Confidence 22222222334666666543346899999999999999999999999999875
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.3e-34 Score=299.86 Aligned_cols=249 Identities=24% Similarity=0.337 Sum_probs=185.3
Q ss_pred hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308 23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG 102 (311)
Q Consensus 23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e 102 (311)
.++.++|.++++++||++|+.+.+. ++||+||+++++++|+.|++. |+++||+ |+|+++|+++
T Consensus 464 ~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~--------Gv~~g~~-V~i~~~~s~~ 526 (1304)
T 2vsq_A 464 KPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKH--------GAGKGSV-VALYTKRSLE 526 (1304)
T ss_dssp CCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEECCCSSHH
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhc--------CcCCcCE-EEEEeCCCHH
Confidence 5799999999999999999997543 679999999999999999863 7778885 9999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc-ccccccchhhhhhhcccCCCCCCCCc
Q psy8308 103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK-GRTVLSLPQLRLLSASLSHNNIPGES 181 (311)
Q Consensus 103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
+++++||++|+|+++||++|.++.+++.++++++++++++++........... ......++.... .. ..
T Consensus 527 ~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~---- 596 (1304)
T 2vsq_A 527 LVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTR----FE--EQ---- 596 (1304)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCGGG----GG--SC----
T ss_pred HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccccc----cc--cc----
Confidence 99999999999999999999999999999999999999999765322110000 000000000000 00 00
Q ss_pred ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhc
Q psy8308 182 MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR 261 (311)
Q Consensus 182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
.........++++++|+|||||||.||||+++|+++.+. ......+.+.+.++... ..+..|..+...++.++.
T Consensus 597 -~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~-~~~~~fd~~~~~~~~~l~--- 670 (1304)
T 2vsq_A 597 -ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLS-VSNYAFDAFTFDFYASML--- 670 (1304)
T ss_dssp -SSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEE-CSCTTSTHHHHHHHHHHT---
T ss_pred -cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEE-ECCccHHHHHHHHHHHHH---
Confidence 001112346789999999999999999999999998754 33334456666776543 344555544444454444
Q ss_pred CCcEEEeCC-CCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308 262 CGGVLIIPR-DVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF 304 (311)
Q Consensus 262 ~g~~~v~~~-~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~ 304 (311)
.|+++++.. ....+|..+++.|++++||++.++|+++..|++.
T Consensus 671 ~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~ 714 (1304)
T 2vsq_A 671 NAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA 714 (1304)
T ss_dssp TTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH
T ss_pred cCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhh
Confidence 466666654 3346899999999999999999999999998764
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.6e-34 Score=275.86 Aligned_cols=264 Identities=23% Similarity=0.258 Sum_probs=174.1
Q ss_pred hhhhhhhHHHHHHHHHhhCCCceEEEecccC--ccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEE
Q psy8308 18 KIYKEKQLHRIFEKNAALSPDNTALIFEEQD--KDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAV 95 (311)
Q Consensus 18 ~~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~--~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai 95 (311)
..++..++.++|+++|+++||++|+++.+.. ......+++||+||+++++++|++|.+. |+ +||+ |++
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~--------g~-~gd~-V~i 84 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHA--------SL-HGRA-IAV 84 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHT--------TC-SSCE-EEE
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhc--------CC-CCCE-EEE
Confidence 3455678999999999999999999875421 0001124789999999999999999753 44 6786 999
Q ss_pred EeCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCC
Q psy8308 96 SLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHN 175 (311)
Q Consensus 96 ~~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+++|+++|++++|||+++|+++||+||.++.+++.+++++++++++|+++........................ .....
T Consensus 85 ~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 163 (562)
T 3ite_A 85 SLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIE-NLSTQ 163 (562)
T ss_dssp ECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHH-HHHHS
T ss_pred EeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhh-hcccc
Confidence 99999999999999999999999999999999999999999999999975432211000000011000000000 00000
Q ss_pred CCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhh--------cCCCCCCccceeecchhhh
Q psy8308 176 NIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWAT--------FPYSPSERVGAFKTALTFV 247 (311)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 247 (311)
.. ........++++++|+|||||||.||||++||+++.......... ..+...++... ..+..+.
T Consensus 164 ~~------~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 236 (562)
T 3ite_A 164 DT------SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC-LASRAFD 236 (562)
T ss_dssp CC------SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEEC-CSCTTST
T ss_pred cc------cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEE-ecCchhh
Confidence 00 001112346789999999999999999999999998765443221 23444444322 2233333
Q ss_pred hhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHH
Q psy8308 248 DAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLM 303 (311)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~ 303 (311)
.+...++..+. .|+.+++...+ ..+..+++.|+++++|++.++|+++..+..
T Consensus 237 ~~~~~~~~~l~---~g~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~ 288 (562)
T 3ite_A 237 VHIGEMFLAWR---FGLCAVTGERL-SMLDDLPRTFRELGVTHAGIVPSLLDQTGL 288 (562)
T ss_dssp HHHHHHHHHHH---TTCEEEECCHH-HHHHSHHHHHHHTTCCEEEECHHHHHHHTC
T ss_pred hhHHHHHHHHh---cccEEEecchh-hCHHHHHHHHHHcCCCEEEcCHHHHhhccc
Confidence 33333333333 46677776533 135778999999999999999999876643
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.3e-34 Score=275.21 Aligned_cols=256 Identities=21% Similarity=0.183 Sum_probs=183.3
Q ss_pred hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308 22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS 101 (311)
Q Consensus 22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~ 101 (311)
..++.++++++++++|+.+++.+.... .+++||+||+++++++|++|++. |+++||+ |+++++|++
T Consensus 20 ~~tl~~~l~~~a~~~p~~~~~~~~~~~-----~~~~Ty~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~~~~ 85 (576)
T 3gqw_A 20 FPTLVDALDYAALSSAGMNFYDRRCQL-----EDQLEYQTLKARAEAGAKRLLSL--------NLKKGDR-VALIAETSS 85 (576)
T ss_dssp CSSHHHHHHHHTTSSCEEEEECTTSCE-----EEEEEHHHHHHHHHHHHHHHHHT--------CCCTTCE-EEEECCSSH
T ss_pred CCcHHHHHHHHhhCCCCeEEeCCCCCc-----eeEEcHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCcH
Confidence 458999999999999998887543221 13789999999999999999863 7788886 999999999
Q ss_pred hHHHHHHHHHHhCCeEEeCCCCCc-------HHHHHHHHHHcCCcEEEecCchhhhhhhhcc--cccccchhhhhhhccc
Q psy8308 102 GLIQVLLAVWKAGAAYLPLDVTAP-------EQRVKHILNEARPLLVIAENEQACENLAYKG--RTVLSLPQLRLLSASL 172 (311)
Q Consensus 102 e~~~~~la~~~~G~v~vp~~~~~~-------~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 172 (311)
+|+++++||+++|+++||+++.++ .+++.++++++++++++++............ .......... .. ..
T Consensus 86 ~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 163 (576)
T 3gqw_A 86 EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAW-FK-AL 163 (576)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEHHH-HH-TS
T ss_pred HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecchhh-hh-cc
Confidence 999999999999999999999999 8999999999999999997654322111110 0000000000 00 00
Q ss_pred CCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhh-cCCCCCCccceeecchhhhhhHH
Q psy8308 173 SHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWAT-FPYSPSERVGAFKTALTFVDAVS 251 (311)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
. .. ........++|+++|+|||||||.||||++||+++..++...... +.+.+.++... ..++.|..+
T Consensus 164 ~--~~------~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~---~~p~~h~~g 232 (576)
T 3gqw_A 164 P--EA------DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVS---WLPFYHDMG 232 (576)
T ss_dssp C--CC------CCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEE---CCCTTSHHH
T ss_pred c--cc------ccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEE---cCCcccccc
Confidence 0 00 011122357899999999999999999999999998776655443 66777777533 344444433
Q ss_pred HHHHhhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308 252 EIWGPLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF 304 (311)
Q Consensus 252 ~~~~~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~ 304 (311)
.....+.....|..+++... +.++|..+++.|+++++|+++++|+++..|.+.
T Consensus 233 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 287 (576)
T 3gqw_A 233 LVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRR 287 (576)
T ss_dssp HHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHS
T ss_pred HHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHH
Confidence 32222222334556665442 124799999999999999999999999877654
No 31
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=7.5e-35 Score=274.64 Aligned_cols=240 Identities=23% Similarity=0.312 Sum_probs=174.5
Q ss_pred hhhHHHHHHHHHhhCCC-ceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCC
Q psy8308 22 EKQLHRIFEKNAALSPD-NTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS 100 (311)
Q Consensus 22 ~~~l~~~~~~~a~~~pd-~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~ 100 (311)
..++.+++.++++++|+ ++|+.+.+. ++||+||+++++++|++|. .||+ |+++++|+
T Consensus 21 ~~tl~~~l~~~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~-------------~~~~-V~i~~~~~ 78 (505)
T 3nyq_A 21 MSSLFPALSPAPTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG-------------GAGR-VAVWATPA 78 (505)
T ss_dssp ---CCTTTSSCCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC----------------C-EEEECCSS
T ss_pred cchhHHHHHHHHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc-------------CCCE-EEEEcCCC
Confidence 45677788888888887 999998653 6799999999999998763 2565 99999999
Q ss_pred hhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCC
Q psy8308 101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGE 180 (311)
Q Consensus 101 ~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
++|+++++|++++|+++||+||.++.+++.+++++++++++|++........ ...++.+. . . .... .
T Consensus 79 ~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~------~~~~~~~~-~--~--~~~~-~- 145 (505)
T 3nyq_A 79 METGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPA------LGALERVD-V--D--VRAR-G- 145 (505)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGG------GTTSEEEE-C--C--TTCC-C-
T ss_pred HHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchh------hccccccc-c--c--cccc-c-
Confidence 9999999999999999999999999999999999999999999754211100 00010000 0 0 0000 0
Q ss_pred cccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhh
Q psy8308 181 SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSA 260 (311)
Q Consensus 181 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
.......+++|+++|+|||||||.||||++||+++..........+.+.+.++... .++++|..+..+..+...
T Consensus 146 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~---~~p~~~~~g~~~~~~~~l 219 (505)
T 3nyq_A 146 ---AVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQ---GLPLFHVHGLVLGILGPL 219 (505)
T ss_dssp ---CCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEE---CCCTTSHHHHTTTTHHHH
T ss_pred ---CCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEE---eccHHHHHHHHHHHHHHH
Confidence 01112346789999999999999999999999999988877777778887776433 233333333222222233
Q ss_pred cCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308 261 RCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL 305 (311)
Q Consensus 261 ~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~ 305 (311)
..|+++++... +++..+++.+ ++++|+++.+|+++..|++..
T Consensus 220 ~~G~~~~~~~~--~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~ 261 (505)
T 3nyq_A 220 RRGGSVRHLGR--FSTEGAAREL-NDGATMLFGVPTMYHRIAETL 261 (505)
T ss_dssp HHTCEEEECSS--CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHG
T ss_pred hcCCEEEECCC--CChHHHHHHH-hhCCeEEEehHHHHHHHHHhh
Confidence 34777777654 5799999999 899999999999999998854
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.69 E-value=1.7e-17 Score=149.37 Aligned_cols=107 Identities=19% Similarity=0.244 Sum_probs=79.0
Q ss_pred CCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCC
Q psy8308 192 SNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRD 271 (311)
Q Consensus 192 ~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 271 (311)
.+|+++|+|||||||.||||++||+++.+++......+.+.+.++.... .++.|..++..++..+. .|+.+++...
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~-~pl~h~~gl~~~~~~l~---~g~~~~~~~~ 111 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVC-LNVGYIAGLMMLVRGME---LDWELTVTEP 111 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEEC-SCTTSHHHHHHHHHHHH---HTCEEEEECC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEE-CChHHHHHHHHHHHHHH---hCcEEEecCc
Confidence 4689999999999999999999999999888877778888888875433 23333333333333333 3556665542
Q ss_pred CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308 272 VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK 306 (311)
Q Consensus 272 ~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~ 306 (311)
. ...++.|+++++|++.++|+++.+|+++..
T Consensus 112 ~----~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~ 142 (358)
T 4gs5_A 112 T----ANPLAGLDHADFDFVAMVPMQLQSILENSA 142 (358)
T ss_dssp C----SCTTTTCSSCCCSEEEECHHHHHHHHHCTT
T ss_pred c----ccHHHHHHHhCCeEEEcChHHHHHhhcccc
Confidence 1 234678999999999999999999998654
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.62 E-value=1.8e-15 Score=139.67 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=82.8
Q ss_pred CC-CCeEEEEEccCCCCCCcceEecchhHHHHHHHH---HhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEE
Q psy8308 191 QS-NDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQ---WATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVL 266 (311)
Q Consensus 191 ~~-~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 266 (311)
.+ +++++++|||||||.||||++||+++....... .....+.+.++.....+...+.......+..+ ..|+++
T Consensus 83 ~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l---~~G~~~ 159 (436)
T 3qov_A 83 DMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAE---RLGCLT 159 (436)
T ss_dssp CHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHH---HHTCEE
T ss_pred CCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHH---HcCCEE
Confidence 35 789999999999999999999999987655433 23446777776544322222222222223333 347777
Q ss_pred EeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhCC
Q psy8308 267 IIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGT 310 (311)
Q Consensus 267 v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~~ 310 (311)
++... .+++.+++.|+++++|+++++|+++..|+++.+..+.
T Consensus 160 ~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 201 (436)
T 3qov_A 160 VPAAA--GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGI 201 (436)
T ss_dssp ECCCS--CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTC
T ss_pred EeCCC--CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCC
Confidence 77653 3799999999999999999999999999998776553
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.61 E-value=3.9e-15 Score=137.38 Aligned_cols=115 Identities=16% Similarity=0.190 Sum_probs=82.1
Q ss_pred CCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHH---HhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEE
Q psy8308 190 EQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQ---WATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVL 266 (311)
Q Consensus 190 ~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 266 (311)
..++++++++|||||||.||||++||+++....... ...+.+.+.++.....+...+.......+.+ ...|+++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~G~~~ 163 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGA---ERAGLTV 163 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHH---HHTTCEE
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHH---HHcCCEE
Confidence 346789999999999999999999999987654322 2345667777654332221222222222333 3357777
Q ss_pred EeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308 267 IIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG 309 (311)
Q Consensus 267 v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~ 309 (311)
++... ++++.+++.|+++++|+++.+|+++..|+++.+..+
T Consensus 164 ~~~~~--~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~ 204 (437)
T 2y27_A 164 IPFGG--GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQG 204 (437)
T ss_dssp ECCCS--CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT
T ss_pred EeCCC--CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC
Confidence 76654 379999999999999999999999999998876544
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.60 E-value=4.5e-15 Score=137.18 Aligned_cols=115 Identities=13% Similarity=0.150 Sum_probs=82.3
Q ss_pred CCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHH---HhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEE
Q psy8308 190 EQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQ---WATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVL 266 (311)
Q Consensus 190 ~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 266 (311)
..++++++++|||||||.||||++||+++....... ...+++.+.++.....+...+.......+..+. .|+++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~---~G~~~ 165 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAER---LGCMV 165 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHH---HTCEE
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHH---cCCEE
Confidence 356889999999999999999999999987654332 224567777765433222122222222333333 47777
Q ss_pred EeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308 267 IIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG 309 (311)
Q Consensus 267 v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~ 309 (311)
++... ++++.+++.|+++++|++..+|+++..|+++.+..+
T Consensus 166 ~~~~~--~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~ 206 (443)
T 2y4o_A 166 VPMSG--GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQG 206 (443)
T ss_dssp ECCCS--CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT
T ss_pred EECCC--CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcC
Confidence 77654 379999999999999999999999999998876544
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.54 E-value=1.3e-14 Score=130.84 Aligned_cols=110 Identities=25% Similarity=0.282 Sum_probs=73.4
Q ss_pred CCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHH---hhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEE
Q psy8308 191 QSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQW---ATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLI 267 (311)
Q Consensus 191 ~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v 267 (311)
.++++++|+|||||||.||||+++|+++.....+.. ....+.+.++.....+...+..+....+.. ...|+ .+
T Consensus 89 ~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~---~~~G~-~v 164 (369)
T 3hgu_A 89 PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERA---LRLGG-MF 164 (369)
T ss_dssp CTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHH---HHTTS-CE
T ss_pred CccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHH---HHcCC-EE
Confidence 578899999999999999999999999987765432 334556666653332221332222222222 33466 44
Q ss_pred eCCCCCCChh-----------------------HHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308 268 IPRDVTRNPD-----------------------QLIGTLEKYKVERLVLVPSLLRSMLMFLK 306 (311)
Q Consensus 268 ~~~~~~~~p~-----------------------~~~~~i~~~~vt~~~~vP~~~~~ll~~~~ 306 (311)
++.. ++|. .+++.|+++++|++..+|+++..|+++.+
T Consensus 165 ~~~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~ 224 (369)
T 3hgu_A 165 FSID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE 224 (369)
T ss_dssp ECCC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH
T ss_pred ECcc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh
Confidence 4443 3677 88889999999999999999999987643
No 37
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=86.52 E-value=7.5 Score=34.70 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=58.8
Q ss_pred CcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC--ChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHH
Q psy8308 55 TNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP--SSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHI 132 (311)
Q Consensus 55 ~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n--~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~ 132 (311)
..+|.+.+...+..++..+... +..++|+ +...++- ....+...++++..|+.+++... .+++++...
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~--------~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~ 177 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAA--------GARRGDK-VHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQL 177 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHH
Confidence 3568888887777666655432 4566775 6666664 33445557888899999997765 488999999
Q ss_pred HHHcCCcEEEecC
Q psy8308 133 LNEARPLLVIAEN 145 (311)
Q Consensus 133 l~~s~~~~vi~~~ 145 (311)
++..++.+++...
T Consensus 178 i~~~~~t~l~~~P 190 (437)
T 2y27_A 178 IQDFRPDIIMVTP 190 (437)
T ss_dssp HHHHCCSEEEECH
T ss_pred HHHhCCCEEEECH
Confidence 9999999988743
No 38
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=85.35 E-value=8.8 Score=34.29 Aligned_cols=81 Identities=12% Similarity=0.243 Sum_probs=59.1
Q ss_pred CcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC--ChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHH
Q psy8308 55 TNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP--SSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHI 132 (311)
Q Consensus 55 ~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n--~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~ 132 (311)
..+|.+.+...+..++..+... +..++|+ +...++- ....+...++++..|+.+++.... .++++...
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~--------~~~~~d~-~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~ 179 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAA--------GGRPGDT-LHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQL 179 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHH
Confidence 3568888887777776655432 4566775 6666664 334455678888999999987664 88999999
Q ss_pred HHHcCCcEEEecC
Q psy8308 133 LNEARPLLVIAEN 145 (311)
Q Consensus 133 l~~s~~~~vi~~~ 145 (311)
++..++.+++...
T Consensus 180 i~~~~~t~l~~~P 192 (443)
T 2y4o_A 180 IRDFEPKIILVTP 192 (443)
T ss_dssp HHHHCCSEEEECH
T ss_pred HHHhCCcEEEECH
Confidence 9999999988743
No 39
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=79.78 E-value=23 Score=31.41 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=59.6
Q ss_pred CcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC--ChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHH
Q psy8308 55 TNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP--SSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHI 132 (311)
Q Consensus 55 ~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n--~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~ 132 (311)
..+|.+.+...+..++..+... +..++|+ +...++- ....+..+++.+..|+.+++..+ ..++++...
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~--------~~~~~d~-~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~ 173 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMV--------GIRKTDV-FQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKF 173 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--------TCCTTSE-EEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHH
Confidence 3578999988887777766532 4566775 6666653 34455567888999999998765 478899999
Q ss_pred HHHcCCcEEEecC
Q psy8308 133 LNEARPLLVIAEN 145 (311)
Q Consensus 133 l~~s~~~~vi~~~ 145 (311)
++..++.+++...
T Consensus 174 i~~~~~t~~~~~P 186 (436)
T 3qov_A 174 ISDFKTTALHAIP 186 (436)
T ss_dssp HHHHTCCEEECCH
T ss_pred HHHHCCCEEEECH
Confidence 9999999988743
No 40
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=79.78 E-value=20 Score=32.47 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=63.0
Q ss_pred CCCceEEE-ecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh-HHHHHHHHHHh
Q psy8308 36 SPDNTALI-FEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG-LIQVLLAVWKA 113 (311)
Q Consensus 36 ~pd~~Ai~-~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e-~~~~~la~~~~ 113 (311)
.|+.+|++ +-.++.+.-....+|.+.+...+..+...+ +..++|+ +...+|-... -+..+++.+..
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----------~~~~~d~-~l~~~p~~~~~g~~~~~~~l~~ 228 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----------GFDRDTN-WLSVLPIYHISGLSVLLRAVIE 228 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----------CCCTTCE-EEECSCTTSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----------CCCccCE-EEEeCcHHHHHHHHHHHHHHHc
Confidence 46777754 332221111123578888887776665544 4455675 5555555433 23346778889
Q ss_pred CCeEEeCCCCCcHHHHHHHHHHcCCcEEEecC
Q psy8308 114 GAAYLPLDVTAPEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 114 G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~ 145 (311)
|+.++... .++++++...++..++.+++...
T Consensus 229 G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P 259 (501)
T 3ipl_A 229 GFTVRIVD-KFNAEQILTMIKNERITHISLVP 259 (501)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHSCCCEEEECH
T ss_pred CceEEeCC-CCCHHHHHHHHHHcCCcEEEchH
Confidence 99888765 57899999999999999888744
No 41
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=69.15 E-value=64 Score=29.49 Aligned_cols=78 Identities=8% Similarity=-0.017 Sum_probs=55.4
Q ss_pred CcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHH--H-HHHHHHHhCCeEEeCCCCCcHHHHHH
Q psy8308 55 TNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLI--Q-VLLAVWKAGAAYLPLDVTAPEQRVKH 131 (311)
Q Consensus 55 ~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~--~-~~la~~~~G~v~vp~~~~~~~~el~~ 131 (311)
..+|.+.+...+......+ +..++|+ +...+|-+..+- . .+++.+..|+.++... .+.++++..
T Consensus 200 V~~th~~~~~~~~~~~~~~-----------~~~~~d~-~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~ 266 (539)
T 1mdb_A 200 IPRTHDDYIYSLKRSVEVC-----------WLDHSTV-YLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFP 266 (539)
T ss_dssp EEEEHHHHHHHHHHHHHHH-----------TCCTTCE-EEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHH
T ss_pred EEEehHHHHHHHHHHHHhh-----------CCCCCCE-EEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHH
Confidence 3678888877776665544 3445664 666666554432 2 4688888999888654 578999999
Q ss_pred HHHHcCCcEEEecC
Q psy8308 132 ILNEARPLLVIAEN 145 (311)
Q Consensus 132 ~l~~s~~~~vi~~~ 145 (311)
.++..++.+++...
T Consensus 267 ~i~~~~~t~~~~~P 280 (539)
T 1mdb_A 267 LIEREKVTITALVP 280 (539)
T ss_dssp HHHHHTCSEEEECH
T ss_pred HHHHcCCeEEEccH
Confidence 99999999888744
No 42
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=67.75 E-value=1.3 Score=41.87 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=25.4
Q ss_pred CCCCeEEEEEccCCC-CCCcceEecchhHHH
Q psy8308 191 QSNDIAIVLYTSGST-GIPKGVRLPHEVILN 220 (311)
Q Consensus 191 ~~~~~a~i~~TSGTT-G~PKgV~~th~~~~~ 220 (311)
.++.+.++.-||||| |.||-+..|...+-.
T Consensus 97 ~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 97 SAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred CCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 356788999999999 889999999986644
No 43
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=67.30 E-value=57 Score=29.84 Aligned_cols=97 Identities=11% Similarity=0.091 Sum_probs=63.1
Q ss_pred CCCceEEE-ecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHH---HHHHHH
Q psy8308 36 SPDNTALI-FEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQ---VLLAVW 111 (311)
Q Consensus 36 ~pd~~Ai~-~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~---~~la~~ 111 (311)
.|+.+|++ +-.++.+.-....+|.+.+...+..++..+ +..++|+ +...+|-+..+-. .+++.+
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----------~~~~~d~-~l~~~p~~h~~~~~~~~~~~~l 256 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----------GLNSNTR-LLCALPAPHNFMLSSPGALGVL 256 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----------TCCTTCE-EEECSCTTSHHHHHSSHHHHHH
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----------CCCCCCe-EEEecCcceEeecchHHHHHHH
Confidence 35666654 322221111123678988887777666544 4455675 6677776655433 367888
Q ss_pred HhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecC
Q psy8308 112 KAGAAYLPLDVTAPEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 112 ~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~ 145 (311)
..|+.++... ...+.++...++..++.+++...
T Consensus 257 ~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P 289 (544)
T 3o83_A 257 HAGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVP 289 (544)
T ss_dssp HTTCEEEECS-SCCHHHHHHHHHHHTCCEEEECH
T ss_pred HcCCEEEECC-CCCHHHHHHHHHHHCCCEEEech
Confidence 8899888654 46889999999999999888743
No 44
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=61.26 E-value=33 Score=31.15 Aligned_cols=79 Identities=14% Similarity=0.075 Sum_probs=55.7
Q ss_pred CcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh-HHHHHHHHHHhCCeEEeCCCC--CcHHHHHH
Q psy8308 55 TNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG-LIQVLLAVWKAGAAYLPLDVT--APEQRVKH 131 (311)
Q Consensus 55 ~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e-~~~~~la~~~~G~v~vp~~~~--~~~~el~~ 131 (311)
..+|.+.+...+......+ +..++|+ +...+|-+.. .+..+++.+..|+.++...+. ..++++..
T Consensus 162 v~~th~~l~~~~~~~~~~~-----------~~~~~d~-~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~ 229 (512)
T 3fce_A 162 VQITYNCLVSFTKWAVEDF-----------NLQTGQV-FLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFA 229 (512)
T ss_dssp EEEEHHHHHHHHHHHHHHT-----------TCCSSCE-EEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHH
T ss_pred EEEehHHHHHHHHHHHHhc-----------CCCCCCE-EEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHH
Confidence 3578888887666655443 4455675 6666665433 234567888899988877653 57889999
Q ss_pred HHHHcCCcEEEecC
Q psy8308 132 ILNEARPLLVIAEN 145 (311)
Q Consensus 132 ~l~~s~~~~vi~~~ 145 (311)
.++..++.+++...
T Consensus 230 ~i~~~~~t~~~~~P 243 (512)
T 3fce_A 230 SLEQSDIQVWTSTP 243 (512)
T ss_dssp HHHHHCCCEEEECH
T ss_pred HHHHcCCcEEEecH
Confidence 99999999888743
No 45
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=61.24 E-value=39 Score=30.66 Aligned_cols=98 Identities=10% Similarity=0.043 Sum_probs=62.3
Q ss_pred CCCceEEE-ecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH-HHHHHHHHHh
Q psy8308 36 SPDNTALI-FEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL-IQVLLAVWKA 113 (311)
Q Consensus 36 ~pd~~Ai~-~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~-~~~~la~~~~ 113 (311)
.++.+|++ +-.++.+.-....+|.+.+...+..++..+ +..++|+ +...+|-+..+ +..+++++..
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----------~~~~~d~-~l~~~p~~~~~~~~~~~~~l~~ 208 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----------PVSGGKI-FLNQAPFSFDLSVMDLYPCLQS 208 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----------TTTTTCE-EEECSCTTSTHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----------CCCccce-EEEeCCccHHHHHHHHHHHHhc
Confidence 35566644 322221111123678888887776665543 3445664 66666655433 3446788889
Q ss_pred CCeEEeCCCC--CcHHHHHHHHHHcCCcEEEecC
Q psy8308 114 GAAYLPLDVT--APEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 114 G~v~vp~~~~--~~~~el~~~l~~s~~~~vi~~~ 145 (311)
|+.++..... ..++.+...++..++.+++...
T Consensus 209 G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P 242 (511)
T 3e7w_A 209 GGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTP 242 (511)
T ss_dssp TCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECH
T ss_pred CCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecH
Confidence 9988876543 5788899999999999888643
No 46
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=58.82 E-value=82 Score=28.41 Aligned_cols=77 Identities=10% Similarity=-0.035 Sum_probs=50.7
Q ss_pred CcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH--HHHHHHHHHhCCeEEeCCCCCcHHHHHHH
Q psy8308 55 TNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL--IQVLLAVWKAGAAYLPLDVTAPEQRVKHI 132 (311)
Q Consensus 55 ~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~--~~~~la~~~~G~v~vp~~~~~~~~el~~~ 132 (311)
..+|.+.+...+..+...+ +..++|+ +...+|-...+ ...+.+.+..|+.+++. .+.++++...
T Consensus 178 V~~sh~~l~~~~~~~~~~~-----------~~~~~d~-~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~--~~~~~~~~~~ 243 (509)
T 3ivr_A 178 ALISQGNLLIAQSSLVDAW-----------RLTEADV-NLGMLPLFHVTGLGLMLTLQQAGGASVIAA--KFDPAQAARD 243 (509)
T ss_dssp EEEEHHHHHHHHHHHHHHT-----------TCCTTCE-EEECSCTTSHHHHHHHHHHHHHTCEEEECS--SCCHHHHHHH
T ss_pred EEEehHHHHHHHHHHHHhh-----------CCCCCcE-EEEeCCCcchhHHHHHHHHHHhCCcEEEec--ccCHHHHHHH
Confidence 3678888887776666544 4455675 56666654432 22334455555555544 7899999999
Q ss_pred HHHcCCcEEEecC
Q psy8308 133 LNEARPLLVIAEN 145 (311)
Q Consensus 133 l~~s~~~~vi~~~ 145 (311)
++..++.+++.-.
T Consensus 244 i~~~~~t~~~~~p 256 (509)
T 3ivr_A 244 IEAHKVTVMAEFA 256 (509)
T ss_dssp HHHHTCCEEEEET
T ss_pred HHHHCCcEEEecH
Confidence 9999999887643
No 47
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=57.25 E-value=96 Score=28.07 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=53.5
Q ss_pred CcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHH--HHHHHHHhCCeEEeCCCCCcHHHHHHH
Q psy8308 55 TNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQ--VLLAVWKAGAAYLPLDVTAPEQRVKHI 132 (311)
Q Consensus 55 ~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~--~~la~~~~G~v~vp~~~~~~~~el~~~ 132 (311)
..+|.+.+...+..++..+ +..++|+ +...+|-...+-. .+++.+ .|+.++.. +.+.++++...
T Consensus 188 V~~sh~~l~~~~~~~~~~~-----------~~~~~d~-~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~~~~~~~~~~~ 253 (517)
T 3r44_A 188 VVHTHESVHSAASSWASTI-----------DVRYRDR-LLLPLPMFHVAALTTVIFSAM-RGVTLISM-PQFDATKVWSL 253 (517)
T ss_dssp EEEEHHHHHHHHHHHHHHS-----------CCCTTCE-EEECSCTTSHHHHHHHHHHHH-HTCEEEEC-SSCCHHHHHHH
T ss_pred eeeeHHHHHHHHHHHHHhc-----------CCCCCCE-EEEeCchHHHHHHHHHHHHHh-cCeEEEEe-CCCCHHHHHHH
Confidence 3678888887776666544 4455675 6666665544322 245555 88888866 56899999999
Q ss_pred HHHcCCcEEEecC
Q psy8308 133 LNEARPLLVIAEN 145 (311)
Q Consensus 133 l~~s~~~~vi~~~ 145 (311)
+...++.+++...
T Consensus 254 i~~~~~t~~~~~P 266 (517)
T 3r44_A 254 IVEERVCIGGAVP 266 (517)
T ss_dssp HHHTTCCEEEECH
T ss_pred HHHhCCeEEEeHH
Confidence 9999999888743
No 48
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=56.05 E-value=4 Score=38.32 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=24.8
Q ss_pred CCCCeEEEEEccCCC-CCCcceEecchhHHH
Q psy8308 191 QSNDIAIVLYTSGST-GIPKGVRLPHEVILN 220 (311)
Q Consensus 191 ~~~~~a~i~~TSGTT-G~PKgV~~th~~~~~ 220 (311)
.++.+.++.-||||| |.||-+..|...+-.
T Consensus 96 ~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 96 TGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 355678899999999 889999999986643
No 49
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=55.40 E-value=2.8 Score=39.35 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=24.8
Q ss_pred CCCCeEEEEEccCCC-CCCcceEecchhHHH
Q psy8308 191 QSNDIAIVLYTSGST-GIPKGVRLPHEVILN 220 (311)
Q Consensus 191 ~~~~~a~i~~TSGTT-G~PKgV~~th~~~~~ 220 (311)
.++-+.+..-||||| |.||-+..|...+-.
T Consensus 91 ~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 91 SARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 355678999999999 789999999986643
No 50
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=51.62 E-value=63 Score=29.57 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=55.8
Q ss_pred CcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH-HHHHHHHHHhCCeEEeCCCCCcHHHHHHHH
Q psy8308 55 TNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL-IQVLLAVWKAGAAYLPLDVTAPEQRVKHIL 133 (311)
Q Consensus 55 ~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~-~~~~la~~~~G~v~vp~~~~~~~~el~~~l 133 (311)
..+|.+.+...+..++..+ +..++|+ +...+|-...+ +..++..+..|+.++... .+.++.+...+
T Consensus 198 V~~sh~~l~~~~~~~~~~~-----------~~~~~d~-~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i 264 (549)
T 3g7s_A 198 VMLTHFNLAANALQLAVAT-----------GLSHMDT-IVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENI 264 (549)
T ss_dssp EEEEHHHHHHHHHHHHHHH-----------CCCTTCE-EECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHH
T ss_pred EEEcHHHHHHHHHHHHHHc-----------CCCCCCE-EEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHH
Confidence 3678999988887777655 3455675 55555554432 233667778888887664 67899999999
Q ss_pred HHcCCcEEEecC
Q psy8308 134 NEARPLLVIAEN 145 (311)
Q Consensus 134 ~~s~~~~vi~~~ 145 (311)
+..++.+++...
T Consensus 265 ~~~~~t~~~~~P 276 (549)
T 3g7s_A 265 EKYKGTFSWAVP 276 (549)
T ss_dssp HHTTCCEEEECH
T ss_pred HHhCCeEEEeCC
Confidence 999999888743
No 51
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=51.39 E-value=52 Score=30.37 Aligned_cols=98 Identities=9% Similarity=0.057 Sum_probs=63.2
Q ss_pred CCCceEEE-ecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHH--HHHHHHHH
Q psy8308 36 SPDNTALI-FEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLI--QVLLAVWK 112 (311)
Q Consensus 36 ~pd~~Ai~-~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~--~~~la~~~ 112 (311)
.|+.+|++ +-.++.+.-....+|.+.+...+..+...+ +..++|+ +...+|-+..+- ..+++.+.
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----------~~~~~d~-~l~~~p~~h~~g~~~~~~~~l~ 232 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----------HMNDETI-IFSWLPPHHDMGLIGCILTPIY 232 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----------TCCTTCE-EEECSCTTSHHHHHTTTHHHHH
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----------CCCCcCe-EEEecCCCcchhhHHHHHHHHh
Confidence 45666654 322221111124678998887777766544 3455675 666666655433 33688888
Q ss_pred hCCeEEeCCCCC---cHHHHHHHHHHcCCcEEEecC
Q psy8308 113 AGAAYLPLDVTA---PEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 113 ~G~v~vp~~~~~---~~~el~~~l~~s~~~~vi~~~ 145 (311)
.|+.++...+.. .+..+...++..++.++....
T Consensus 233 ~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p 268 (590)
T 3kxw_A 233 GGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPN 268 (590)
T ss_dssp HTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECT
T ss_pred cCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCCh
Confidence 999888776532 678888999999999887643
No 52
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=50.57 E-value=71 Score=29.17 Aligned_cols=60 Identities=8% Similarity=-0.078 Sum_probs=43.3
Q ss_pred CCCCCCcEEEEEeCCChhHH-HHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecC
Q psy8308 85 ENQDGDHIVAVSLAPSSGLI-QVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 85 g~~~gd~~Vai~~~n~~e~~-~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~ 145 (311)
+..++|+ +...+|-...+- ...++.+..|+.++...+.++++++...++..++.+++...
T Consensus 215 ~~~~~d~-~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P 275 (541)
T 1v25_A 215 ALSEKDV-VLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVP 275 (541)
T ss_dssp CCCTTCE-EEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECH
T ss_pred cCCCCCE-EEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecch
Confidence 3455664 566665543332 23567788899988877778999999999999999888743
No 53
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=49.57 E-value=1.6e+02 Score=27.25 Aligned_cols=96 Identities=8% Similarity=0.032 Sum_probs=62.0
Q ss_pred CCceEEE-ecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHH---HHHHHHH
Q psy8308 37 PDNTALI-FEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQ---VLLAVWK 112 (311)
Q Consensus 37 pd~~Ai~-~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~---~~la~~~ 112 (311)
|+.+|++ +-.++.+.-....+|.+.+...+......+ +..++|+ +...+|-+..|-. .+++.+.
T Consensus 183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----------~~~~~~~-~l~~~p~~~~~~~~~~~~~~~l~ 250 (617)
T 3rg2_A 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----------QFTQQTR-YLCAIPAAHNYAMSSPGSLGVFL 250 (617)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----------TCCTTCE-EEECSCTTSHHHHHSSHHHHHHH
T ss_pred CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----------CCCCcce-EEEeccchhhhhhhHHHHHHHHH
Confidence 4666644 432222111224678888887777766555 3455675 6676665544433 3677888
Q ss_pred hCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecC
Q psy8308 113 AGAAYLPLDVTAPEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 113 ~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~ 145 (311)
.|+.++.... ..+..+...++..++.++....
T Consensus 251 ~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P 282 (617)
T 3rg2_A 251 AGGTVVLAAD-PSATLCFPLIEKHQVNVTALVP 282 (617)
T ss_dssp HTCEEEECSS-CCHHHHHHHHHHTTCCEEEECH
T ss_pred cCCEEEEeCC-CCHHHHHHHHHHhCCcEEEcch
Confidence 8888886654 5788888899999999888743
No 54
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=48.04 E-value=68 Score=28.92 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=59.0
Q ss_pred CCCceEEE-ecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCC--CCCCcEEEEEeCCChhH--HHHHHHH
Q psy8308 36 SPDNTALI-FEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNEN--QDGDHIVAVSLAPSSGL--IQVLLAV 110 (311)
Q Consensus 36 ~pd~~Ai~-~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~--~~gd~~Vai~~~n~~e~--~~~~la~ 110 (311)
.|+.+|++ +-.++.+.-....+|.+.+...+..+...+ +. .++|+ +...+|-...+ +..+++.
T Consensus 151 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----------~~~~~~~~~-~l~~~p~~~~~g~~~~~~~~ 218 (504)
T 1t5h_X 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----------GLRHGRHNV-VLGLMPLYHVVGFFAVLVAA 218 (504)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----------CCCSSTTCE-EEECSCTTSHHHHTTTHHHH
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----------CCCCCCCce-EEeecchhhcchHHHHHHHH
Confidence 45666654 322211111123567887776665554322 22 34564 55555554443 2346788
Q ss_pred HHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecC
Q psy8308 111 WKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 111 ~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~ 145 (311)
+..|+.++... .+.++++...++..++.+++...
T Consensus 219 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P 252 (504)
T 1t5h_X 219 LALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATP 252 (504)
T ss_dssp HHTTCEEEECS-SCCHHHHHHHHHHHTCCEEECCH
T ss_pred HHcCceEEeCC-CCCHHHHHHHHHHhCCeEEEeCh
Confidence 88999888765 47889999999999999988743
No 55
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=46.67 E-value=70 Score=29.46 Aligned_cols=78 Identities=8% Similarity=0.029 Sum_probs=51.0
Q ss_pred cccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh-HHHHHHHHHHhCCeEEeCCCC--CcHHHHHHH
Q psy8308 56 NETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG-LIQVLLAVWKAGAAYLPLDVT--APEQRVKHI 132 (311)
Q Consensus 56 ~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e-~~~~~la~~~~G~v~vp~~~~--~~~~el~~~ 132 (311)
.+|.+.+...+..++..+ +..++|+ +...++-+.. .+..++..+..|+.++..... ..+.++...
T Consensus 201 ~~th~~l~~~~~~~~~~~-----------~~~~~d~-~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 268 (563)
T 1amu_A 201 MLEHKGISNLKVFFENSL-----------NVTEKDR-IGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQY 268 (563)
T ss_dssp EEESHHHHHHHHHHHHTS-----------CCCTTCE-EEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHH
T ss_pred EEehHHHHHHHHHHHHhc-----------CCCCCCE-EEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHH
Confidence 568887765554443322 4556675 5555554433 333456778889888766542 578889999
Q ss_pred HHHcCCcEEEecC
Q psy8308 133 LNEARPLLVIAEN 145 (311)
Q Consensus 133 l~~s~~~~vi~~~ 145 (311)
++..++.+++...
T Consensus 269 i~~~~~t~~~~~P 281 (563)
T 1amu_A 269 INQKEITVITLPP 281 (563)
T ss_dssp HHHTTCCEEEECH
T ss_pred HHHcCCcEEEeCH
Confidence 9999998887643
No 56
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=42.91 E-value=1e+02 Score=28.13 Aligned_cols=81 Identities=7% Similarity=-0.043 Sum_probs=51.9
Q ss_pred CcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh-HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHH
Q psy8308 55 TNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG-LIQVLLAVWKAGAAYLPLDVTAPEQRVKHIL 133 (311)
Q Consensus 55 ~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e-~~~~~la~~~~G~v~vp~~~~~~~~el~~~l 133 (311)
..+|.+.+...+......+. ..+..++|+ +...+|-... -+...++.+..|+.++.. +.+.++.+...+
T Consensus 208 V~~th~~~~~~~~~~~~~~~--------~~~~~~~~~-~l~~~p~~~~~g~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i 277 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIF--------GNQIIPDTA-ILSVVPFHHGFGMFTTLGYLICGFRVVLM-YRFEEELFLRSL 277 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTT--------SCCCCTTCE-EEECSCTTSHHHHHHHHHHHHHTCEEEEC-SSCCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhhhhhc--------cccCCCCcE-EEEechHHHHHHHHHHHHHHHcCCEEEEe-CCCCHHHHHHHH
Confidence 35688776654433322110 024455675 5555555433 234456778889988876 457899999999
Q ss_pred HHcCCcEEEecC
Q psy8308 134 NEARPLLVIAEN 145 (311)
Q Consensus 134 ~~s~~~~vi~~~ 145 (311)
+..++.+++...
T Consensus 278 ~~~~~t~~~~~P 289 (550)
T 3rix_A 278 QDYKIQSALLVP 289 (550)
T ss_dssp HHTTCSEEEECH
T ss_pred HHcCCeEEEeCc
Confidence 999999888743
No 57
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=42.13 E-value=1.1e+02 Score=28.01 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=58.7
Q ss_pred CceEEEec-ccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH--HHHHHHHHHhC
Q psy8308 38 DNTALIFE-EQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL--IQVLLAVWKAG 114 (311)
Q Consensus 38 d~~Ai~~~-~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~--~~~~la~~~~G 114 (311)
+.+|++.. .++.+.-....+|.+.+...+......+. ..+..++|+ +...+|-+..+ ...+++.+ .|
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--------~~~~~~~d~-~l~~~p~~h~~g~~~~~~~~l-~G 261 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--------GNQVSPGTA-VLTVVPFHHGFGMFTTLGYLI-CG 261 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--------SCCCCTTCE-EEECSCTTSHHHHHHHHHHHH-TT
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--------ccCCCccce-EEEeccHHHHHHHHHHHHHHh-cC
Confidence 66775532 22111111235788887765544432210 014456675 56666654433 33356777 99
Q ss_pred CeEEeCCCCCcHHHHHHHHHHcCCcEEEecC
Q psy8308 115 AAYLPLDVTAPEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 115 ~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~ 145 (311)
+.++... .+.++++...++..++.+++...
T Consensus 262 ~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P 291 (548)
T 2d1s_A 262 FRVVMLT-KFDEETFLKTLQDYKCTSVILVP 291 (548)
T ss_dssp CEEEECC-CCCHHHHHHHHHHTTEEEEEECH
T ss_pred cEEEEcC-CCCHHHHHHHHHHcCCcEEEecH
Confidence 9888765 57899999999999999888743
No 58
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=41.32 E-value=1.6e+02 Score=26.46 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=58.8
Q ss_pred CCCceEEE-ecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh--HHHHHHHHHH
Q psy8308 36 SPDNTALI-FEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG--LIQVLLAVWK 112 (311)
Q Consensus 36 ~pd~~Ai~-~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e--~~~~~la~~~ 112 (311)
.|+.+|++ +-.++.+.-....+|.+.+...+..+...+ +..++|+ +...+|-... ++..+++.+.
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----------~~~~~d~-~l~~~p~~~~~g~~~~~~~~l~ 220 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----------QWTGEDV-LVQGLPLFHVHGLVLGILGPLR 220 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----------TCCTTCE-EEECCCTTSHHHHTTTTHHHHH
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----------CCCCCcE-EEEeccHHHHHHHHHHHHHHHh
Confidence 35566644 332221111124678999888887777655 3344564 5555554333 2334688888
Q ss_pred hCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecC
Q psy8308 113 AGAAYLPLDVTAPEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 113 ~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~ 145 (311)
.|+.++.. +.+.++.+...+ ..++.+++...
T Consensus 221 ~G~~~~~~-~~~~~~~~~~~i-~~~~t~~~~~P 251 (505)
T 3nyq_A 221 RGGSVRHL-GRFSTEGAAREL-NDGATMLFGVP 251 (505)
T ss_dssp HTCEEEEC-SSCCHHHHHHHH-TTTCCEEEECH
T ss_pred cCCEEEEC-CCCChHHHHHHH-hhCCeEEEehH
Confidence 99988866 457777777777 56777777643
No 59
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=38.88 E-value=87 Score=28.41 Aligned_cols=60 Identities=15% Similarity=0.032 Sum_probs=44.6
Q ss_pred CCCCCCcEEEEEeCCChhHH--HHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecC
Q psy8308 85 ENQDGDHIVAVSLAPSSGLI--QVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 85 g~~~gd~~Vai~~~n~~e~~--~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~ 145 (311)
+..++|+ +...+|-...+- ..++..+..|+.++...+...++++...+...++.+++.-.
T Consensus 221 ~~~~~d~-~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P 282 (529)
T 2v7b_A 221 GIAENDV-VFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVP 282 (529)
T ss_dssp CCCTTCE-EEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECH
T ss_pred CCCCCcE-EEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecH
Confidence 4455664 666666555432 33567788999998887888999999999999999988743
No 60
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=35.11 E-value=78 Score=27.07 Aligned_cols=79 Identities=8% Similarity=0.071 Sum_probs=49.5
Q ss_pred cccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC--ChhHHHHHHHHHHhCCeEEeCCCCCcHH------
Q psy8308 56 NETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP--SSGLIQVLLAVWKAGAAYLPLDVTAPEQ------ 127 (311)
Q Consensus 56 ~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n--~~e~~~~~la~~~~G~v~vp~~~~~~~~------ 127 (311)
.+|.+.+...+..++..+.. .+..++|+ +..++|- ...-+...++++..|+.+++.. +.++
T Consensus 110 ~~t~~~~~~~~~~~~~~~~~--------~~~~~~d~-~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~ 178 (369)
T 3hgu_A 110 VAYDAWIEALISWRMSGYQH--------RPGRPSGN-TLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSL 178 (369)
T ss_dssp EECHHHHHHHHHHHTTTTTT--------STTCCCCE-EEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHH
T ss_pred EECHHHHHHHHHHHHhhHHh--------hCCCCcce-EEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhh
Confidence 56787777666655443321 25566775 6666654 2223344455588999777654 3444
Q ss_pred -----------------HHHHHHHHcCCcEEEecC
Q psy8308 128 -----------------RVKHILNEARPLLVIAEN 145 (311)
Q Consensus 128 -----------------el~~~l~~s~~~~vi~~~ 145 (311)
++...++..++.++++..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P 213 (369)
T 3hgu_A 179 SEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTP 213 (369)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECH
T ss_pred cccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCH
Confidence 777788999999888744
No 61
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=33.38 E-value=1e+02 Score=26.42 Aligned_cols=75 Identities=16% Similarity=0.031 Sum_probs=44.6
Q ss_pred CcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh-HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHH
Q psy8308 55 TNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG-LIQVLLAVWKAGAAYLPLDVTAPEQRVKHIL 133 (311)
Q Consensus 55 ~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e-~~~~~la~~~~G~v~vp~~~~~~~~el~~~l 133 (311)
..+|.+.+...+..++..+ +..++|+ +...+|-+.. -+..++..+..|+..+...+.... ...+
T Consensus 55 V~~th~~l~~~~~~~~~~~-----------~~~~~d~-~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~---~~~i 119 (358)
T 4gs5_A 55 ITVTRAQLAASAAMTGKAL-----------SLGPGTR-ALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP---LAGL 119 (358)
T ss_dssp EEEEHHHHHHHHHHHHHHT-----------TCCTTCE-EEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT---TTTC
T ss_pred EEEeHHHHHHHHHHHHHHh-----------CCCCCCE-EEEECChHHHHHHHHHHHHHHhCcEEEecCccccH---HHHH
Confidence 4679998887776666544 4566775 5565554432 233445556677776666554432 2345
Q ss_pred HHcCCcEEEec
Q psy8308 134 NEARPLLVIAE 144 (311)
Q Consensus 134 ~~s~~~~vi~~ 144 (311)
+..++.+++..
T Consensus 120 ~~~~~t~~~~~ 130 (358)
T 4gs5_A 120 DHADFDFVAMV 130 (358)
T ss_dssp SSCCCSEEEEC
T ss_pred HHhCCeEEEcC
Confidence 56677766653
No 62
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=32.48 E-value=1.1e+02 Score=26.18 Aligned_cols=61 Identities=10% Similarity=0.182 Sum_probs=39.9
Q ss_pred CCCCCCCCcEEEEEeCCCh------hHHHHHHHHH-HhCCeEEeCCCC------------CcHHHHHHHHHHcCCcEEEe
Q psy8308 83 PNENQDGDHIVAVSLAPSS------GLIQVLLAVW-KAGAAYLPLDVT------------APEQRVKHILNEARPLLVIA 143 (311)
Q Consensus 83 ~~g~~~gd~~Vai~~~n~~------e~~~~~la~~-~~G~v~vp~~~~------------~~~~el~~~l~~s~~~~vi~ 143 (311)
....++||+ |+|++|.+. +-+..-...+ ..|.-++.-... -..+++...+.+-+.++|+|
T Consensus 6 P~~L~~GD~-I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~ 84 (327)
T 4h1h_A 6 PAKLKQGDE-IRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILT 84 (327)
T ss_dssp CCCCCTTCE-EEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCCCCCCCE-EEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEE
Confidence 346788996 999999864 2233323333 346666543221 24678888999999999998
Q ss_pred c
Q psy8308 144 E 144 (311)
Q Consensus 144 ~ 144 (311)
.
T Consensus 85 ~ 85 (327)
T 4h1h_A 85 V 85 (327)
T ss_dssp S
T ss_pred c
Confidence 5
No 63
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=32.25 E-value=1.4e+02 Score=27.90 Aligned_cols=60 Identities=8% Similarity=-0.054 Sum_probs=42.5
Q ss_pred CCCCCCcEEEEEeCCChh-HHHHHHHHHHhCCeEEeCC-CCCcHHHHHHHHHHcCCcEEEecC
Q psy8308 85 ENQDGDHIVAVSLAPSSG-LIQVLLAVWKAGAAYLPLD-VTAPEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 85 g~~~gd~~Vai~~~n~~e-~~~~~la~~~~G~v~vp~~-~~~~~~el~~~l~~s~~~~vi~~~ 145 (311)
+..++|+ +...++-+-. .+..+++.+..|+.++... ..+.++.+...++..++..++...
T Consensus 200 ~~~~~d~-~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P 261 (620)
T 4dg8_A 200 AFAPQMR-FLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTA 261 (620)
T ss_dssp TTCTTCE-EEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEH
T ss_pred CCCCCCE-EEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccH
Confidence 4456675 6666665444 3344678888888877663 467899999999999998887643
No 64
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=31.52 E-value=5.1 Score=32.34 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=14.9
Q ss_pred ccCCCCCCcceEecchhHH
Q psy8308 201 TSGSTGIPKGVRLPHEVIL 219 (311)
Q Consensus 201 TSGTTG~PKgV~~th~~~~ 219 (311)
+|+-|| ||||+--++.+-
T Consensus 3 ~~~~tg-pkgvi~d~~~~~ 20 (217)
T 2trc_P 3 QATHTG-PKGVINDWRKFK 20 (217)
T ss_dssp SCCSSH-HHHHHHHHHHHH
T ss_pred CCCCCC-cchHHHHHHHHH
Confidence 577777 899999998875
No 65
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=28.49 E-value=1.2e+02 Score=26.97 Aligned_cols=82 Identities=12% Similarity=0.024 Sum_probs=53.2
Q ss_pred CcccHHHHHHHHHHHHHHHHhhhccCCCCCCC-CCCCcEEEEEeCCChh--HHHHHHHHHHhCCeEEeCCCC---CcHHH
Q psy8308 55 TNETYSELNSASNQLARGLLHFLHTKAVPNEN-QDGDHIVAVSLAPSSG--LIQVLLAVWKAGAAYLPLDVT---APEQR 128 (311)
Q Consensus 55 ~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~-~~gd~~Vai~~~n~~e--~~~~~la~~~~G~v~vp~~~~---~~~~e 128 (311)
..+|.+.+...+..+...+.-. ..+. .++| ++...+|-... ++..+++.+..|+.++...+. ..++.
T Consensus 201 V~~th~~l~~~~~~~~~~~~~~------~~~~~~~~d-~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 273 (480)
T 3t5a_A 201 VVMSHQNVRVNFEQLMSGYFAD------TDGIPPPNS-ALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPAR 273 (480)
T ss_dssp EEEEHHHHHHHHHHHHHHHCTT------TTTCCCTTE-EEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHH
T ss_pred EEEeHHHHHHHHHHHHHHhccc------cccCCCCCC-eEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHH
Confidence 4679999888777777655210 0011 1145 46666665543 345678888899988877654 47788
Q ss_pred HHHHHHHcCCcEEEe
Q psy8308 129 VKHILNEARPLLVIA 143 (311)
Q Consensus 129 l~~~l~~s~~~~vi~ 143 (311)
+...++..++.+..+
T Consensus 274 ~~~~i~~~~~t~~~~ 288 (480)
T 3t5a_A 274 WMHLMASDFHAFSAA 288 (480)
T ss_dssp HHHHTTSSSEEEEEE
T ss_pred HHHHHHhhceeEeeC
Confidence 888888888874443
No 66
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=28.27 E-value=1.8e+02 Score=26.39 Aligned_cols=98 Identities=13% Similarity=0.045 Sum_probs=59.8
Q ss_pred CCceEEEec-ccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh--HHHHHHHHHHh
Q psy8308 37 PDNTALIFE-EQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG--LIQVLLAVWKA 113 (311)
Q Consensus 37 pd~~Ai~~~-~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e--~~~~~la~~~~ 113 (311)
|+.+|++.. .++.+.-....+|.+.+...+..+.... .+..++|+ +...+|-... ++..+++.+..
T Consensus 175 ~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~----------~~~~~~d~-~l~~~p~~h~~g~~~~~~~~l~~ 243 (576)
T 3gqw_A 175 PNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDG----------IKLRPGDR-CVSWLPFYHDMGLVGFLLTPVAT 243 (576)
T ss_dssp TTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTT----------SCCCTTCC-EEECCCTTSHHHHHHHTHHHHHT
T ss_pred CCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcc----------cCCCCcce-EEEcCCccccccHHHHHHHHHhc
Confidence 566665432 2221111123678888876555443311 24566786 5666665544 33456777888
Q ss_pred CCeEEeCCC---CCcHHHHHHHHHHcCCcEEEecC
Q psy8308 114 GAAYLPLDV---TAPEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 114 G~v~vp~~~---~~~~~el~~~l~~s~~~~vi~~~ 145 (311)
|+.++...+ ...+..+...++..++.+++...
T Consensus 244 g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p 278 (576)
T 3gqw_A 244 QLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPP 278 (576)
T ss_dssp TCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECH
T ss_pred CceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCH
Confidence 888776654 25677889999999999887643
No 67
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=27.49 E-value=3e+02 Score=25.16 Aligned_cols=60 Identities=13% Similarity=-0.017 Sum_probs=42.8
Q ss_pred CCCCCCcEEEEEeCCChhHH--HHHHHHHHhCCeEEeCC-CCCcHHHHHHHHHHcCCcEEEecC
Q psy8308 85 ENQDGDHIVAVSLAPSSGLI--QVLLAVWKAGAAYLPLD-VTAPEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 85 g~~~gd~~Vai~~~n~~e~~--~~~la~~~~G~v~vp~~-~~~~~~el~~~l~~s~~~~vi~~~ 145 (311)
+..++|+ +...++-+..+- ..+++.+..|+.++... +.+.++++...++..++.+++...
T Consensus 243 ~~~~~d~-~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P 305 (570)
T 3c5e_A 243 GLQASDI-MWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAP 305 (570)
T ss_dssp SCCTTCE-EEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECH
T ss_pred CCCCCce-EEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccH
Confidence 4556675 666666554432 24577788888777665 478999999999999999888743
No 68
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=27.03 E-value=3e+02 Score=24.55 Aligned_cols=100 Identities=10% Similarity=0.010 Sum_probs=57.4
Q ss_pred CCCceEEE-ecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh-HHHHHHHHHHh
Q psy8308 36 SPDNTALI-FEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG-LIQVLLAVWKA 113 (311)
Q Consensus 36 ~pd~~Ai~-~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e-~~~~~la~~~~ 113 (311)
.|+.+|++ +-.++.+.-....+|.+.+...+..+.... ..+...+|+ +...++-+.. .+..++.++..
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---------~~~~~~~~~-~l~~~~~~~~~~~~~~~~~l~~ 212 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---------AFDVPKQPQ-MLAQPPYSFDLSVMYWAPTLAL 212 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---------TTCCCSSCE-EECCSCTTSGGGHHHHHHHHHT
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---------ccCCCCCCe-EEecCCccHHHHHHHHHHHHhc
Confidence 34666644 322221111123678888876555444321 013344554 5444444433 34456778888
Q ss_pred CCeEEeCCCC--CcHHHHHHHHHHcCCcEEEecC
Q psy8308 114 GAAYLPLDVT--APEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 114 G~v~vp~~~~--~~~~el~~~l~~s~~~~vi~~~ 145 (311)
|+.++..... ...+++...+...++.++....
T Consensus 213 G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P 246 (521)
T 3l8c_A 213 GGTLFALPKELVADFKQLFTTIAQLPVGIWTSTP 246 (521)
T ss_dssp TCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECH
T ss_pred CCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCC
Confidence 9888876543 4788899999999998887643
No 69
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=25.94 E-value=2.3e+02 Score=25.34 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=55.4
Q ss_pred CCCceEEE-ecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh--HHHHHHHHHH
Q psy8308 36 SPDNTALI-FEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG--LIQVLLAVWK 112 (311)
Q Consensus 36 ~pd~~Ai~-~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e--~~~~~la~~~ 112 (311)
.|+.+|++ +-.++.+.-....+|.+.+...+..+...+ +..++|+ +...+|-... ++...+..+.
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----------~~~~~d~-~~~~~p~~~~~g~~~~~~~~l~ 220 (503)
T 4fuq_A 153 GADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----------RFTPDDV-LIHALPIYHTHGLFVASNVTLF 220 (503)
T ss_dssp CTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----------TCCTTCE-EEECSCSSSHCCCCCCHHHHHH
T ss_pred CCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----------CCCCCCE-EEEeCChHHHHHHHHHHHHHHH
Confidence 35666644 332221111123678888887776666544 4455675 5665554332 2334556677
Q ss_pred hCCeEEeCCCCCcHHHHHHHHHHcCCcEEEec
Q psy8308 113 AGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144 (311)
Q Consensus 113 ~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~ 144 (311)
.|+.++.. +.+.++++...++ ++.+++.-
T Consensus 221 ~g~~~~~~-~~~~~~~~~~~i~--~~t~~~~~ 249 (503)
T 4fuq_A 221 ARGSMIFL-PKFDPDKILDLMA--RATVLMGV 249 (503)
T ss_dssp TTCEEEEC-SSCCHHHHHHHHT--TCCEEEEC
T ss_pred hCCEEEEc-CCCCHHHHHHHHh--hcCEEEEH
Confidence 78877765 4678888888887 67777653
No 70
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=25.68 E-value=2.4e+02 Score=25.95 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=42.7
Q ss_pred CCCCCCcEEEEEeCCChh--HHHHHHHHHHhCCeEEeCC-CCCcHHHHHHHHHHcCCcEEEecC
Q psy8308 85 ENQDGDHIVAVSLAPSSG--LIQVLLAVWKAGAAYLPLD-VTAPEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 85 g~~~gd~~Vai~~~n~~e--~~~~~la~~~~G~v~vp~~-~~~~~~el~~~l~~s~~~~vi~~~ 145 (311)
+..++|+ +...++.... .+..+++.+..|+.++..+ ..+.++++...++..++.+++...
T Consensus 262 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P 324 (580)
T 3etc_A 262 NVEDDGL-HYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPP 324 (580)
T ss_dssp CCCTTCE-EEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECH
T ss_pred CCCCCce-EEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccH
Confidence 4455664 4554444433 2234678888999888775 678999999999999999888744
No 71
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=23.83 E-value=1.6e+02 Score=25.65 Aligned_cols=60 Identities=8% Similarity=0.079 Sum_probs=40.1
Q ss_pred CCCCCCCcEEEEEeCCChh------HHHHHHHHHH-hCCeEEeCCCC------------CcHHHHHHHHHHcCCcEEEec
Q psy8308 84 NENQDGDHIVAVSLAPSSG------LIQVLLAVWK-AGAAYLPLDVT------------APEQRVKHILNEARPLLVIAE 144 (311)
Q Consensus 84 ~g~~~gd~~Vai~~~n~~e------~~~~~la~~~-~G~v~vp~~~~------------~~~~el~~~l~~s~~~~vi~~ 144 (311)
...++||+ |+|++|.++- -+..-...++ .|..++.-... -..+++...+.+-++++|+|.
T Consensus 38 ~~Lk~GD~-I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~ 116 (371)
T 3tla_A 38 APLAVGDT-IGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMST 116 (371)
T ss_dssp CCCCTTCE-EEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEES
T ss_pred CCCCCcCE-EEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 46788996 9999999853 2333333343 57766643221 246788888888889999984
No 72
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=23.26 E-value=3.8e+02 Score=25.00 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=41.2
Q ss_pred CCCCCCcEEEEEeCCChhHH--HHHHHHHHhCCeEEeCCC---CCcHHHHHHHHHHcCCcEEEecC
Q psy8308 85 ENQDGDHIVAVSLAPSSGLI--QVLLAVWKAGAAYLPLDV---TAPEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 85 g~~~gd~~Vai~~~n~~e~~--~~~la~~~~G~v~vp~~~---~~~~~el~~~l~~s~~~~vi~~~ 145 (311)
+..++|+ +...++-+..+- ..+++.+..|+.++.... ...++.+...++..++.++++..
T Consensus 294 ~~~~~d~-~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P 358 (652)
T 1pg4_A 294 DYHPGDI-YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358 (652)
T ss_dssp TCCTTCE-EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECH
T ss_pred CCCCCCE-EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCH
Confidence 4456674 555544433322 335788889998887653 25788999999999999988743
No 73
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=22.64 E-value=2.2e+02 Score=24.37 Aligned_cols=60 Identities=8% Similarity=0.102 Sum_probs=40.1
Q ss_pred CCCCCCCcEEEEEeCCChh------HHHHHHHHHH-hCCeEEeCCC------------CCcHHHHHHHHHHcCCcEEEec
Q psy8308 84 NENQDGDHIVAVSLAPSSG------LIQVLLAVWK-AGAAYLPLDV------------TAPEQRVKHILNEARPLLVIAE 144 (311)
Q Consensus 84 ~g~~~gd~~Vai~~~n~~e------~~~~~la~~~-~G~v~vp~~~------------~~~~~el~~~l~~s~~~~vi~~ 144 (311)
...++||+ |+|++|.++- -+..-...++ .|..++.-.. .-..+++...+.+-++++|+|.
T Consensus 8 ~~L~~GD~-I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 86 (336)
T 3sr3_A 8 KSLKYGDT-IGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMST 86 (336)
T ss_dssp CCCCTTCE-EEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCCCE-EEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 45688996 9999999853 2333333343 5776664321 1246788888888899999985
No 74
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=22.00 E-value=1.6e+02 Score=25.02 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=36.4
Q ss_pred CCCCcEEEEEeCCChhHHHHHHHHHHhCCeEEeCCCC-------CcHHHHHHHHHHcCCcEEEecC
Q psy8308 87 QDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVT-------APEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 87 ~~gd~~Vai~~~n~~e~~~~~la~~~~G~v~vp~~~~-------~~~~el~~~l~~s~~~~vi~~~ 145 (311)
++||. |.+..+....+ ..++...|+.++++... ...++++..++..+++++++..
T Consensus 107 ~~gd~-vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 107 SPGDQ-ILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp CTTCE-EEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred CCCCe-EEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 45675 55555554443 33556788887776542 7889999999766788777643
No 75
>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*
Probab=21.82 E-value=1.9e+02 Score=22.23 Aligned_cols=44 Identities=5% Similarity=0.012 Sum_probs=29.5
Q ss_pred cccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHHH
Q psy8308 56 NETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLA 109 (311)
Q Consensus 56 ~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~la 109 (311)
-+|..|+.+++.++|+.+.... ++ ...+.+...++--+++..|+
T Consensus 13 lis~~~I~~~i~rlA~eI~e~~-------~~---~~~vlvgIl~Gg~~fa~~L~ 56 (181)
T 3acd_A 13 QISAEAIKKRVEELGGEIARDY-------QG---KTPHLICVLNGAFIFMADLV 56 (181)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHT-------TT---CCCEEEEEETTTHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHHHHHh-------CC---CCcEEEEEecCcHHHHHHHH
Confidence 3699999999999999997542 21 22355555566666655553
No 76
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=21.16 E-value=1.3e+02 Score=25.27 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=33.8
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHHhCCeEEeCCC--C--CcHHHHHHHHHHcCCcEEEecC
Q psy8308 88 DGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV--T--APEQRVKHILNEARPLLVIAEN 145 (311)
Q Consensus 88 ~gd~~Vai~~~n~~e~~~~~la~~~~G~v~vp~~~--~--~~~~el~~~l~~s~~~~vi~~~ 145 (311)
+||. |.+..+..+.+.....++...|+.++.+.. . ...++++..++. +++++++..
T Consensus 88 ~gd~-vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 147 (384)
T 1eg5_A 88 RKRT-IITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMA 147 (384)
T ss_dssp TCCE-EEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEES
T ss_pred CCCE-EEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEEC
Confidence 4675 666555555555555444567877665543 2 467888877753 567776643
No 77
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=20.40 E-value=2.4e+02 Score=24.10 Aligned_cols=60 Identities=10% Similarity=0.062 Sum_probs=40.2
Q ss_pred CCCCCCCcEEEEEeCCChh------HHHHHHHHHH-hCCeEEeCCCC------------CcHHHHHHHHHHcCCcEEEec
Q psy8308 84 NENQDGDHIVAVSLAPSSG------LIQVLLAVWK-AGAAYLPLDVT------------APEQRVKHILNEARPLLVIAE 144 (311)
Q Consensus 84 ~g~~~gd~~Vai~~~n~~e------~~~~~la~~~-~G~v~vp~~~~------------~~~~el~~~l~~s~~~~vi~~ 144 (311)
...++||+ |+|++|.+.- -+..-...++ .|..++.-... -..+++...+.+-++++|+|.
T Consensus 7 ~~L~~GD~-I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 85 (331)
T 4e5s_A 7 TKLKKGDE-IRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTT 85 (331)
T ss_dssp CCCCTTCE-EEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCcCE-EEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 35678896 8999998763 2333333443 57766643211 246788888888899999984
Done!